Citrus Sinensis ID: 000092
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2267 | 2.2.26 [Sep-21-2011] | |||||||
| Q38970 | 2254 | Acetyl-CoA carboxylase 1 | yes | no | 0.991 | 0.996 | 0.816 | 0.0 | |
| F4I1L3 | 2355 | Acetyl-CoA carboxylase 2 | no | no | 0.995 | 0.957 | 0.793 | 0.0 | |
| Q8S6N5 | 2267 | Acetyl-CoA carboxylase 1 | yes | no | 0.993 | 0.993 | 0.748 | 0.0 | |
| B9FK36 | 2327 | Acetyl-CoA carboxylase 2 | yes | no | 0.982 | 0.957 | 0.693 | 0.0 | |
| P78820 | 2280 | Acetyl-CoA carboxylase OS | yes | no | 0.945 | 0.939 | 0.401 | 0.0 | |
| Q13085 | 2346 | Acetyl-CoA carboxylase 1 | yes | no | 0.936 | 0.904 | 0.400 | 0.0 | |
| O00763 | 2458 | Acetyl-CoA carboxylase 2 | no | no | 0.923 | 0.851 | 0.409 | 0.0 | |
| Q5SWU9 | 2345 | Acetyl-CoA carboxylase 1 | yes | no | 0.936 | 0.905 | 0.401 | 0.0 | |
| Q9TTS3 | 2346 | Acetyl-CoA carboxylase 1 | yes | no | 0.936 | 0.904 | 0.400 | 0.0 | |
| P11029 | 2324 | Acetyl-CoA carboxylase OS | yes | no | 0.938 | 0.915 | 0.401 | 0.0 |
| >sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3851 bits (9986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1843/2257 (81%), Positives = 2038/2257 (90%), Gaps = 10/2257 (0%)
Query: 14 GRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYE 73
G NG+ + P + +S+VDEFC++L GK+PIHSILIANNGMAAVKFIRS+RTWAYE
Sbjct: 3 GSVNGNHSAVGPGINYETVSQVDEFCKALRGKRPIHSILIANNGMAAVKFIRSVRTWAYE 62
Query: 74 TFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVD 133
TFGTEKAILLV MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+TRVD
Sbjct: 63 TFGTEKAILLVGMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVD 122
Query: 134 AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193
AVWPGWGHASE PELPD L KGIIFLGPPA+SMAALGDKIGSSLIAQAA+VPTLPWSGS
Sbjct: 123 AVWPGWGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLPWSGS 182
Query: 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 253
HVKIPP S LVTIP+++YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD
Sbjct: 183 HVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 242
Query: 254 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII 313
EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD++GNV+ALHSRDCSVQRRHQKII
Sbjct: 243 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRHQKII 302
Query: 314 EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHP 373
EEGPITVAP ETVKKLEQAARRLAK VNYVGAATVEYLYSM+TGEYYFLELNPRLQVEHP
Sbjct: 303 EEGPITVAPPETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHP 362
Query: 374 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAE 433
VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG+EHGG YD+WRKTSV+A PFDFD+A+
Sbjct: 363 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGIEHGGGYDSWRKTSVVAFPFDFDKAQ 422
Query: 434 STRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 493
S RPKGHCVAVRVTSEDPDDGFKPTSG+VQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF
Sbjct: 423 SIRPKGHCVAVRVTSEDPDDGFKPTSGRVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 482
Query: 494 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR+NKIHTGWLDSRI
Sbjct: 483 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRDNKIHTGWLDSRI 542
Query: 554 AMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIE 613
AMRVRAERPPWYLSVVGGALYKASA+SAA+VSDY+GYLEKGQIPPKHISLV+SQVSLNIE
Sbjct: 543 AMRVRAERPPWYLSVVGGALYKASATSAAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIE 602
Query: 614 GSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLL 673
GSKY ID+VR G G+Y LRMN+SE+ AEIHTLRDGGLLMQLDG SHV+YAEEEAAGTRLL
Sbjct: 603 GSKYTIDVVRGGSGTYRLRMNKSEVVAEIHTLRDGGLLMQLDGKSHVIYAEEEAAGTRLL 662
Query: 674 IDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG 733
IDGRTCLLQNDHDPSKL+AETPCKL+RYL+SD S+IDADTPYAEVEVMKMCMPLLSPASG
Sbjct: 663 IDGRTCLLQNDHDPSKLMAETPCKLMRYLISDNSNIDADTPYAEVEVMKMCMPLLSPASG 722
Query: 734 VLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASL 793
V+ FKM+EGQAMQAGELIA LDLDDPSAVRKAEPF+GSFP LG PTAISG+VHQRCAA+L
Sbjct: 723 VIHFKMSEGQAMQAGELIANLDLDDPSAVRKAEPFHGSFPRLGLPTAISGRVHQRCAATL 782
Query: 794 NAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKE 853
NAARMILAGYEH ++EVVQ+LLNCLDSPELP LQWQEC AVL+TRLPK+L+N LESK +E
Sbjct: 783 NAARMILAGYEHKVDEVVQDLLNCLDSPELPFLQWQECFAVLATRLPKNLRNMLESKYRE 842
Query: 854 FERIS-SSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912
FE IS +S DFPAKLL+G+LEAHL SC +KERG+ ERLIEPLMSL KSYEGGRESHAR
Sbjct: 843 FESISRNSLTTDFPAKLLKGILEAHLSSCDEKERGALERLIEPLMSLAKSYEGGRESHAR 902
Query: 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRL 972
VIV SLFEEYLSVEELF+D + ADVIER+R YKKDLLK+VDIVLSHQG+K KNKL+LRL
Sbjct: 903 VIVHSLFEEYLSVEELFNDNMLADVIERMRQLYKKDLLKIVDIVLSHQGIKNKNKLVLRL 962
Query: 973 MEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMF 1032
MEQLVYPNPAAYRDKLIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSELEMF
Sbjct: 963 MEQLVYPNPAAYRDKLIRFSTLNHTNYSELALKASQLLEQTKLSELRSNIARSLSELEMF 1022
Query: 1033 TEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1092
TEDGE+MDTPKRKSAI+ER+EDLVSA LAVEDALVGLFDHSDHTLQRRVVETY+RRLYQP
Sbjct: 1023 TEDGENMDTPKRKSAINERIEDLVSASLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQP 1082
Query: 1093 YLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPED-QTPEQPLVEKHSERKWGAMVIIK 1150
Y+VK SVRMQWHR GL+ASWEFLEEH+ERKN G +D T E+ LVEK S+RKWGAMVIIK
Sbjct: 1083 YVVKDSVRMQWHRSGLLASWEFLEEHMERKNIGLDDPDTSEKGLVEKRSKRKWGAMVIIK 1142
Query: 1151 SLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQ 1210
SLQ P I+SAALRET H ND + G+ + GNMMHIA+VG+NNQMSLLQDSGDEDQ
Sbjct: 1143 SLQFLPSIISAALRETKH--NDYETAGAPLS---GNMMHIAIVGINNQMSLLQDSGDEDQ 1197
Query: 1211 AQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPL 1270
AQER+NKLAKILKE+EV S L SAGVGVISCIIQRDEGR PMRHSFHWS EK YY EEPL
Sbjct: 1198 AQERVNKLAKILKEEEVSSSLCSAGVGVISCIIQRDEGRTPMRHSFHWSLEKQYYVEEPL 1257
Query: 1271 LRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSN 1330
LRHLEPPLSIYLELDKLKGY NIQYT SRDRQWHLYTV DKP+PI+RMFLR+LVRQ T N
Sbjct: 1258 LRHLEPPLSIYLELDKLKGYSNIQYTPSRDRQWHLYTVTDKPVPIKRMFLRSLVRQATMN 1317
Query: 1331 DGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILR 1390
DGF+ D ++ +M+FTS+ VLRSLM AMEELELN HNA++K DHA M+LCILR
Sbjct: 1318 DGFILQQGQDKQLSQTLISMAFTSKCVLRSLMDAMEELELNAHNAAMKPDHAHMFLCILR 1377
Query: 1391 EQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAY 1450
EQ+I+DLVP+P+RV+V+A EET +E +LEE AREIH +VGVRMH+LGVCEWEV+LW+
Sbjct: 1378 EQQIDDLVPFPRRVEVNAEDEETTVEMILEEAAREIHRSVGVRMHRLGVCEWEVRLWLVS 1437
Query: 1451 SGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLG 1510
SG A GAWRVVV NVTG TC V+IYRE+E +++++YHS+ +G LH ++ QY+ LG
Sbjct: 1438 SGLACGAWRVVVANVTGRTCTVHIYREVETPGRNSLIYHSITKKGPLHETPISDQYKPLG 1497
Query: 1511 VLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSG 1569
LD++RL ARRSNTTYCYDFPLAF TALE WASQ P + +P L+ V EL F+ G
Sbjct: 1498 YLDRQRLAARRSNTTYCYDFPLAFGTALELLWASQHPGVKKPYKDTLINVKELVFSKPEG 1557
Query: 1570 TWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1629
+ GT L LVER PGLN+ GMVAWC++M TPEFP GR +L++ANDVTFKAGSFGPREDAFF
Sbjct: 1558 SSGTSLDLVERPPGLNDFGMVAWCLDMSTPEFPMGRKLLVIANDVTFKAGSFGPREDAFF 1617
Query: 1630 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYA 1689
LAVT+LACAKKLPLIYLAANSGAR+GVAEEVKACF++GW+DE++P+ GF Y+YL+PED+
Sbjct: 1618 LAVTELACAKKLPLIYLAANSGARLGVAEEVKACFKVGWSDEISPENGFQYIYLSPEDHE 1677
Query: 1690 RIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYV 1749
RIGSSVIAHE+KL SGETRWV+D+IVGKEDG+GVENLTGSGAIAGAYS+AY ETFTLT+V
Sbjct: 1678 RIGSSVIAHEVKLSSGETRWVIDTIVGKEDGIGVENLTGSGAIAGAYSKAYNETFTLTFV 1737
Query: 1750 TGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGV 1809
+GRTVGIGAYLARLGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLGGPKIM TNGV
Sbjct: 1738 SGRTVGIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLGGPKIMGTNGV 1797
Query: 1810 VHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGF 1869
VHLTVSDDLEG+SAIL WLSY+P ++GG LP+++PLDPP+R VEY+PENSCDPRAAI G
Sbjct: 1798 VHLTVSDDLEGVSAILNWLSYIPAYVGGPLPVLAPLDPPERIVEYVPENSCDPRAAIAGV 1857
Query: 1870 LDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929
DN GKW+GGIFDK+SF+ETLEGWARTVVTGRA+LGGIPVG+VAVETQTVMQ+IPADPGQ
Sbjct: 1858 KDNTGKWLGGIFDKNSFIETLEGWARTVVTGRAKLGGIPVGVVAVETQTVMQIIPADPGQ 1917
Query: 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA 1989
LDSHERVVPQAGQVWFPDSA KTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA
Sbjct: 1918 LDSHERVVPQAGQVWFPDSAAKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA 1977
Query: 1990 GSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049
GSTIVENLRTY+QPVFVYIPMM ELRGGAWVVVDS+INSD++EMYAD TA+GNVLEPEG
Sbjct: 1978 GSTIVENLRTYRQPVFVYIPMMGELRGGAWVVVDSQINSDYVEMYADETARGNVLEPEGT 2037
Query: 2050 IEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQ 2109
IEIKFRTKELLECMGRLDQKLI L AKLQ+AK + A +E LQQQIKAREKQLLP Y Q
Sbjct: 2038 IEIKFRTKELLECMGRLDQKLISLKAKLQDAKQSEAYANIELLQQQIKAREKQLLPVYIQ 2097
Query: 2110 VATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLT 2169
+ATKFAELHDTS+RMAAKGVIK VV+W SRSFF ++L RR+AESSLVK + A+GD L
Sbjct: 2098 IATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKKLNRRIAESSLVKNVREASGDNLA 2157
Query: 2170 HKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNI 2229
+KS++ +I+ WF +S+IA+GKE AW DD+ FFTWKD+ NYE K+ EL QK+L QL I
Sbjct: 2158 YKSSMRLIQDWFCNSDIAKGKEEAWTDDQVFFTWKDNVSNYELKLSELRAQKLLNQLAEI 2217
Query: 2230 GNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
GNS SDLQALPQGLA LL+KV+PS RE+L+ I K L
Sbjct: 2218 GNS-SDLQALPQGLANLLNKVEPSKREELVAAIRKVL 2253
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Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Required for very long chain fatty acids elongation. Necessary for embryo and plant development. Plays a central function in embryo morphogenesis, especially in apical meristem development. Involved in cell proliferation and tissue patterning. May act as a repressor of cytokinin response. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 1EC: 4 |
| >sp|F4I1L3|ACC2_ARATH Acetyl-CoA carboxylase 2 OS=Arabidopsis thaliana GN=ACC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 3774 bits (9786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1805/2275 (79%), Positives = 2021/2275 (88%), Gaps = 19/2275 (0%)
Query: 1 MSEAQRR-----SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIAN 55
+SEA+R ++ G G NG+ + VP R+ ++EV+EFC++LGGK+PIHSIL+A
Sbjct: 90 VSEAERTVVLPDGSVNGAGSVNGYHSDVVPGRN---VAEVNEFCKALGGKRPIHSILVAT 146
Query: 56 NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115
NGMAAVKFIRS+RTWAYETFG+EKA+ LVAMATPEDMRINAEHIRIADQFVEVPGGTNNN
Sbjct: 147 NGMAAVKFIRSVRTWAYETFGSEKAVKLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 206
Query: 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIG 175
NYANVQLIVEMAE+TRVDAVWPGWGHASE PELPD L KGIIFLGPPA SM ALGDKIG
Sbjct: 207 NYANVQLIVEMAEVTRVDAVWPGWGHASENPELPDALKEKGIIFLGPPADSMIALGDKIG 266
Query: 176 SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMI 235
SSLIAQAA+VPTLPWSGSHVKIPP LVT+P+++Y++ACVYTTEEAIASCQVVGYPAMI
Sbjct: 267 SSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVYTTEEAIASCQVVGYPAMI 326
Query: 236 KASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNV 295
KASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE QLLCDQYGNV
Sbjct: 327 KASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEAQLLCDQYGNV 386
Query: 296 AALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355
AALHSRDCSVQRRHQKIIEEGPITVAP ET+KKLEQAARRLAK VNYVGAATVEYLYSM+
Sbjct: 387 AALHSRDCSVQRRHQKIIEEGPITVAPQETIKKLEQAARRLAKSVNYVGAATVEYLYSMD 446
Query: 356 TGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYD 415
TGEYYFLELNPRLQVEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGG YD
Sbjct: 447 TGEYYFLELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYD 506
Query: 416 AWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWA 475
+WRKTSV+A+PFDFD+AES RPKGHCVAVRVTSEDPDDGFKPTSG++QELSFKSKPN+W+
Sbjct: 507 SWRKTSVVASPFDFDEAESLRPKGHCVAVRVTSEDPDDGFKPTSGEIQELSFKSKPNMWS 566
Query: 476 YFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLH 535
YFSVKSGGGIHEFSDSQFGHVFAFGESR++AIANMVL LKEIQIRG+IRTNVDYTIDLLH
Sbjct: 567 YFSVKSGGGIHEFSDSQFGHVFAFGESRSVAIANMVLALKEIQIRGDIRTNVDYTIDLLH 626
Query: 536 ASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQ 595
ASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKAS +S+A+VSDY+GYLEKGQ
Sbjct: 627 ASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASTTSSAVVSDYVGYLEKGQ 686
Query: 596 IPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLD 655
IPPKHISLV+SQVSLNIEGSKY ID+VR G G+Y LRM+ SE+ AEIHTLRDGGLLMQLD
Sbjct: 687 IPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLD 746
Query: 656 GNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPY 715
G SHV+YA+EEA GTRLLIDGRTCLLQNDHDPSKL+AETPCKLLRYLVSD S ID DTPY
Sbjct: 747 GKSHVIYAKEEATGTRLLIDGRTCLLQNDHDPSKLMAETPCKLLRYLVSDNSSIDTDTPY 806
Query: 716 AEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPIL 775
AEVEVMKMCMPL+SPASGV+ FK++EGQAMQAGELIA+LDLDDPSAVRKA+PF GSFP L
Sbjct: 807 AEVEVMKMCMPLISPASGVIHFKLSEGQAMQAGELIAKLDLDDPSAVRKAKPFRGSFPRL 866
Query: 776 GPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVL 835
G PTAISGKVHQRCAA+LNAARMILAGY+H ++EV+Q+LLNCLDSPELP LQWQEC AVL
Sbjct: 867 GLPTAISGKVHQRCAATLNAARMILAGYDHKVDEVLQDLLNCLDSPELPFLQWQECFAVL 926
Query: 836 STRLPKDLKNELESKCKEFERIS-SSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIE 894
+TRLPKDL+N LE K KEFE IS +S DFPAKLL+G+LEAHL SC +KERGS ERLIE
Sbjct: 927 ATRLPKDLRNMLELKYKEFEIISKTSLTPDFPAKLLKGILEAHLSSCDEKERGSLERLIE 986
Query: 895 PLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVD 954
PLMSLVKSYEGGRESHAR+IV SLFEEYLSVEELF+D + ADVIER+R QYKKD LK+VD
Sbjct: 987 PLMSLVKSYEGGRESHARLIVHSLFEEYLSVEELFNDNMLADVIERMRQQYKKDRLKIVD 1046
Query: 955 IVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTK 1014
IVLSHQG+ KNKL+LRLMEQLVYPNPAAYR+KLIRFSALNHTNYS+LALKASQLLEQTK
Sbjct: 1047 IVLSHQGIIHKNKLVLRLMEQLVYPNPAAYREKLIRFSALNHTNYSQLALKASQLLEQTK 1106
Query: 1015 LSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSD 1074
SELRS+IARSLSELEMFTE GE+MDTPKRKSAI E ME+LVS+ LAVEDALVGLFDHSD
Sbjct: 1107 RSELRSNIARSLSELEMFTEAGENMDTPKRKSAISETMENLVSSSLAVEDALVGLFDHSD 1166
Query: 1075 HTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPED-QTPEQ 1132
HTLQRRVVETY+ RLYQPY+VK SVRMQWH+ G+IASWEFL EH ERKN GP+D + E+
Sbjct: 1167 HTLQRRVVETYIHRLYQPYVVKESVRMQWHQSGVIASWEFL-EHFERKNTGPDDHEISEK 1225
Query: 1133 PLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL 1192
+V K S+RK G MVIIKSLQ P I++A+LRET HS + A+ GNMMHIA+
Sbjct: 1226 GIVAKSSKRKRGTMVIIKSLQFLPSIINASLRETNHSHCE-----YARAPLSGNMMHIAV 1280
Query: 1193 VGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPM 1252
VG+NNQMSLLQDSGDEDQ QER+NKLAKILKE+EV L SAGVGVISCIIQRDEGR PM
Sbjct: 1281 VGINNQMSLLQDSGDEDQTQERVNKLAKILKEEEVSLTLCSAGVGVISCIIQRDEGRTPM 1340
Query: 1253 RHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKP 1312
RHSFHW EK YY EEPLLRH+EPPLS+YLELDKLKGY NIQY+ SRDRQWH+Y+V D+P
Sbjct: 1341 RHSFHWLMEKQYYVEEPLLRHVEPPLSVYLELDKLKGYSNIQYSPSRDRQWHMYSVTDRP 1400
Query: 1313 LPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNV 1372
+PI+RMFLR+LVRQ T NDGF+ D ++ +M+FTS+ +LRSLM AMEELELN
Sbjct: 1401 VPIKRMFLRSLVRQTTMNDGFLLQQGQDYQLSQTVLSMAFTSKCILRSLMNAMEELELNA 1460
Query: 1373 HNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGV 1432
HNA++K DHA M+LCILREQ+I+DLVPYP+R +V+A EET +E +LEE +EIH +VGV
Sbjct: 1461 HNAAMKPDHAHMFLCILREQQIDDLVPYPRRFEVNAEDEETTVETILEEATQEIHRSVGV 1520
Query: 1433 RMHKLGVCEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVA 1492
RMH LGVCEWEV+LW+ SG ANGAWRVVV NVTG TC V+IYRE+E T +++++YHS+
Sbjct: 1521 RMHALGVCEWEVRLWLVSSGLANGAWRVVVANVTGRTCTVHIYREVEATGRNSLIYHSIT 1580
Query: 1493 VRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMR-P 1551
+G LHG +N QY+ L LD+KRL ARRSNTTYCYDFPLAFETALE +WASQ +R P
Sbjct: 1581 KKGPLHGTLINGQYKPLNNLDRKRLAARRSNTTYCYDFPLAFETALELNWASQHSGVRKP 1640
Query: 1552 KDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVA 1611
L+ V EL F++ G+ GT L+ VER GLN+IGMVAW +EM TPEFP GR +LIVA
Sbjct: 1641 CKNRLINVKELVFSNTEGSLGTSLIPVERPAGLNDIGMVAWILEMSTPEFPMGRKLLIVA 1700
Query: 1612 NDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDE 1671
NDVTFKAGSFGPREDAFFLAVT+LAC KKLPLIYLAANSGAR+GVAEEVKACF++GW+DE
Sbjct: 1701 NDVTFKAGSFGPREDAFFLAVTELACTKKLPLIYLAANSGARLGVAEEVKACFKVGWSDE 1760
Query: 1672 LNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGA 1731
++P F Y+YL+ EDYARIGSSVIAHE+KL SGETRWV+D+IVGKEDGLGVENLTGSGA
Sbjct: 1761 VSPGNDFQYIYLSSEDYARIGSSVIAHEVKLPSGETRWVIDTIVGKEDGLGVENLTGSGA 1820
Query: 1732 IAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV 1791
IAGAYSRAY ETFTLT+V+GR+VGIGAYLARLGMRCIQRLDQPIILTGFS LNKLLGREV
Sbjct: 1821 IAGAYSRAYNETFTLTFVSGRSVGIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREV 1880
Query: 1792 YSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP 1851
YSSHMQLGGPKIM TNGVVHLTVSDDLEG+SAIL WLSY+P ++GG LP+++PLDPP+R
Sbjct: 1881 YSSHMQLGGPKIMGTNGVVHLTVSDDLEGVSAILNWLSYIPAYVGGPLPVLAPLDPPERT 1940
Query: 1852 VEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGI 1911
VEY+PENSCDPRAAI G DN GKW+GGIFDK+SFVETLEGWARTVVTGRA+LGGIP+G+
Sbjct: 1941 VEYIPENSCDPRAAIAGINDNTGKWLGGIFDKNSFVETLEGWARTVVTGRAKLGGIPIGV 2000
Query: 1912 VAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILAN 1971
VAVETQTVM VIPADPGQLDSHERVVPQAGQVWFPDSA KTAQALMDFNRE+LPLFI+AN
Sbjct: 2001 VAVETQTVMHVIPADPGQLDSHERVVPQAGQVWFPDSAAKTAQALMDFNREQLPLFIIAN 2060
Query: 1972 WRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHI 2031
WRGFSGGQRDLFEGILQAGS IVENLRTY+QPVFVYIPMM ELRGGAWVVVDS+INSD+I
Sbjct: 2061 WRGFSGGQRDLFEGILQAGSAIVENLRTYRQPVFVYIPMMGELRGGAWVVVDSQINSDYI 2120
Query: 2032 EMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES 2091
EMYAD TA+GNVLEPEGMIEIKFR KELLECMGRLDQ LI+L A +Q+AK N+ A +E
Sbjct: 2121 EMYADETARGNVLEPEGMIEIKFRRKELLECMGRLDQTLINLKANIQDAKRNKAYANIEL 2180
Query: 2092 LQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRV 2151
LQ+QIK REKQLLP YTQ+ATKFAELHDTS+RMAAKGVIK VV+W SRSFF ++L RR+
Sbjct: 2181 LQKQIKTREKQLLPVYTQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKKLYRRI 2240
Query: 2152 AESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYE 2211
AESSLV+ + A+GD L++KSA+ +I+ WF SEIA+GKE AW DD+ FFTWKD+ NYE
Sbjct: 2241 AESSLVRNIRKASGDILSYKSAMGLIQDWFRKSEIAKGKEEAWTDDQLFFTWKDNVSNYE 2300
Query: 2212 KKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
+K+ EL QK+L QL IGNS SDLQALPQGLA LL+KVD S RE+L+ I K L
Sbjct: 2301 QKLSELRTQKLLNQLAEIGNS-SDLQALPQGLANLLNKVDLSRREELVDAIRKVL 2354
|
Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q8S6N5|ACC1_ORYSJ Acetyl-CoA carboxylase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 3542 bits (9184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1699/2271 (74%), Positives = 1968/2271 (86%), Gaps = 19/2271 (0%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
M G + NG +NG R P++ SEVDEFC++LGG PIHS+L+ANNGMAAVKF+RSIRT
Sbjct: 1 MEGSYQMNGILNGMSNSRHPSSPSEVDEFCKALGGDSPIHSVLVANNGMAAVKFMRSIRT 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WA ETFGTEKAILLVAMATPED++INAEHIRIADQFVEVPGGTNNNNYANVQLIVE+AE
Sbjct: 61 WALETFGTEKAILLVAMATPEDLKINAEHIRIADQFVEVPGGTNNNNYANVQLIVEIAER 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T V AVWPGWGHASE PELPD L KGIIFLGPP+ +MAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 THVSAVWPGWGHASENPELPDALKEKGIIFLGPPSAAMAALGDKIGSSLIAQAAGVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPPESC +IP+++YR ACV TTEEA+ASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPESC-NSIPEEMYRSACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKV 239
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD++GNVAALHSRDCSVQRRH
Sbjct: 240 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRH 299
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP ETVK+LEQAARRLAKCV+YVGAATVEYLYSMETGEYYFLELNPRLQ
Sbjct: 300 QKIIEEGPITVAPSETVKELEQAARRLAKCVHYVGAATVEYLYSMETGEYYFLELNPRLQ 359
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQV VGMG+PL+ IPEIRRFYGMEHGG YDAWRK S +AT FD
Sbjct: 360 VEHPVTEWIAEINLPAAQVVVGMGVPLYNIPEIRRFYGMEHGGGYDAWRKISAVATKFDL 419
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D A+S +PKGHCVAVRVTSEDPDDGFKPTSG+V+EL+FKSKPNVWAYFSVKSGG IHEFS
Sbjct: 420 DNAQSVKPKGHCVAVRVTSEDPDDGFKPTSGRVEELNFKSKPNVWAYFSVKSGGAIHEFS 479
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESR+LAIANMVLGLKEIQIRGEIRTNVDYT+DLL+A++YRENKIHTGWL
Sbjct: 480 DSQFGHVFAFGESRSLAIANMVLGLKEIQIRGEIRTNVDYTVDLLNAAEYRENKIHTGWL 539
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALY+AS+ S+++V+DY+GYL KGQIPPKHISLVN V+
Sbjct: 540 DSRIAMRVRAERPPWYLSVVGGALYEASSRSSSVVTDYVGYLSKGQIPPKHISLVNLTVT 599
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY I+ VRRGP SYTLRMN SEIEAEIH+LRDGGLLMQLDGNSHV+YAE EAAG
Sbjct: 600 LNIEGSKYTIETVRRGPRSYTLRMNGSEIEAEIHSLRDGGLLMQLDGNSHVIYAETEAAG 659
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLI+GRTCLLQ +HDPSKL+A+TPCKLLR+LV+DGSH+DADTPYAEVEVMKMCMPLL
Sbjct: 660 TRLLINGRTCLLQKEHDPSKLLADTPCKLLRFLVADGSHVDADTPYAEVEVMKMCMPLLL 719
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASGV+ F M EGQAMQA +LIARLDLDDPS+VR+AEPF+G+FP LGPPTA+SGKVHQ+
Sbjct: 720 PASGVIHFVMPEGQAMQAADLIARLDLDDPSSVRRAEPFHGTFPKLGPPTAVSGKVHQKF 779
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AAS+N+A MILAGYEHNI EVVQ+LLNCLDSPELP LQWQE M+VL+TRLPKDL+NEL+
Sbjct: 780 AASVNSAHMILAGYEHNINEVVQDLLNCLDSPELPFLQWQELMSVLATRLPKDLRNELDG 839
Query: 850 KCKEFERISS-SQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRE 908
K KE+E S +N DFPAKLLRG++EA+L C++K+R + ERL+EPLMSLVKSYEGGRE
Sbjct: 840 KYKEYELNSDFRKNKDFPAKLLRGIIEANLAYCSEKDRVTNERLVEPLMSLVKSYEGGRE 899
Query: 909 SHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKL 968
SHARV+V+SLFEEYLSVEELFSD IQ+DVIERLRLQ+ KDL KVV IV SHQGV+ KNKL
Sbjct: 900 SHARVVVKSLFEEYLSVEELFSDNIQSDVIERLRLQHAKDLEKVVYIVFSHQGVRTKNKL 959
Query: 969 ILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSE 1028
ILRLME LVYPNP+AYRD+LIRFS LN+T YSELALKASQLLE TKLSELR+SIARSLSE
Sbjct: 960 ILRLMEALVYPNPSAYRDQLIRFSGLNNTVYSELALKASQLLEHTKLSELRTSIARSLSE 1019
Query: 1029 LEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRR 1088
LEMFTE+GE + TP+RK AI+ERMEDLV APLAVEDALV LFDHSD TLQRRVVETY+RR
Sbjct: 1020 LEMFTEEGERVSTPRRKMAINERMEDLVGAPLAVEDALVALFDHSDPTLQRRVVETYIRR 1079
Query: 1089 LYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVI 1148
LYQPYLVKGSVRMQWHR GLIA WEF EEHI+++NG + + +Q VE E++WG MV+
Sbjct: 1080 LYQPYLVKGSVRMQWHRSGLIALWEFSEEHIKQRNGQDAMSLKQQ-VEDPEEKRWGVMVV 1138
Query: 1149 IKSLQSFPDILSAALRETAHSRNDS--ISKGSAQTASYGNMMHIALVGMNNQMSLLQDSG 1206
IKSLQ + AAL+ET+H + + +S G++ ++S+GNM+HIALVG+NNQMS LQDSG
Sbjct: 1139 IKSLQYLSSAIDAALKETSHYKAGAGNVSNGNSASSSHGNMLHIALVGINNQMSTLQDSG 1198
Query: 1207 DEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYE 1266
DEDQAQERINK++KILK+ V S L+ AGV V+SCIIQRDEGR PMRHSF WS +K YYE
Sbjct: 1199 DEDQAQERINKISKILKDSTVTSHLNGAGVRVVSCIIQRDEGRPPMRHSFQWSVDKIYYE 1258
Query: 1267 EEPLLRHLEPPLSIYLELDK--LKGYDNIQYTLSRDRQWHLYTVV----DKPLPIRRMFL 1320
E+P+LRH+EPPLS +LEL+K L GY+ ++YT SRDRQWH+YT++ D+ +R+FL
Sbjct: 1259 EDPMLRHVEPPLSTFLELNKVNLDGYNEVKYTPSRDRQWHIYTLIKNKKDQRSNDQRLFL 1318
Query: 1321 RTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSD 1380
RT+VRQP +GF+S V D RAQ + S+TS +LRSLMAA+EE+EL+ HN +V+S
Sbjct: 1319 RTIVRQPGVTNGFLSGNV-DNEVGRAQASSSYTSSSILRSLMAALEEIELHAHNETVRSS 1377
Query: 1381 HAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVC 1440
++ MYLCILR Q++ DL+P+ + +D + GQ+E LL+ +A I+ VGVRMH+L VC
Sbjct: 1378 YSHMYLCILRVQQLFDLIPFSRTID-NVGQDEATACTLLKNMALNIYEHVGVRMHRLSVC 1436
Query: 1441 EWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLHG 1499
+WEVKLW+ GQA+GAWRVVVTNVTGHTC V IYRE+ED++ H + YHSV G LHG
Sbjct: 1437 QWEVKLWLDCDGQASGAWRVVVTNVTGHTCTVDIYREVEDSNTHKLFYHSVTPSLGPLHG 1496
Query: 1500 VEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFP---NMRPKDKAL 1556
+ ++ Y+ L +D KR AR++ TTYCYDFPLAFETAL++SW S +K+
Sbjct: 1497 IVLDEPYKPLDAIDLKRYSARKNETTYCYDFPLAFETALKRSWKSTLSVVAEANEHNKSY 1556
Query: 1557 LKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTF 1616
KVTEL FAD +G+WGTPLV VERSPG+N+IG+VAW M++ TPEFPSGR I++V+NDVTF
Sbjct: 1557 AKVTELMFADSTGSWGTPLVPVERSPGINDIGIVAWIMKLSTPEFPSGREIIVVSNDVTF 1616
Query: 1617 KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDR 1676
KAGSFGPREDAFF AVT+LAC +KLPLIYL+A +GAR+GVAEE+KACF +GW+D+ +P+R
Sbjct: 1617 KAGSFGPREDAFFDAVTNLACERKLPLIYLSATAGARLGVAEEIKACFNVGWSDDESPER 1676
Query: 1677 GFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAY 1736
GF+Y+YLT +DY+R+ SSVIAHE+KLESGETRWVVD+IVGKEDGLG ENL GSGAIA AY
Sbjct: 1677 GFHYIYLTEQDYSRLSSSVIAHELKLESGETRWVVDTIVGKEDGLGCENLHGSGAIASAY 1736
Query: 1737 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM 1796
S+AYKETFTLT+VTGR VGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM
Sbjct: 1737 SKAYKETFTLTFVTGRAVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM 1796
Query: 1797 QLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLP 1856
QLGGPKIMATNGVVHLTVSDDLEG+SAILKWLSYVPP++GG LPI+ PLDPPDRPV Y P
Sbjct: 1797 QLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSYVPPYVGGPLPIMKPLDPPDRPVTYFP 1856
Query: 1857 ENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVET 1916
ENSCD RAAICG D+ GKW+GG+FD++SFVETLEGWA+TVVTGRA+LGGIPVG++AVET
Sbjct: 1857 ENSCDARAAICGVQDSQGKWMGGMFDRESFVETLEGWAKTVVTGRAKLGGIPVGVIAVET 1916
Query: 1917 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 1976
QT+MQVIPADPGQLDS ERVVPQAGQVWFPDSATKTAQAL+DFNREELPLFILANWRGFS
Sbjct: 1917 QTMMQVIPADPGQLDSAERVVPQAGQVWFPDSATKTAQALLDFNREELPLFILANWRGFS 1976
Query: 1977 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD 2036
GGQRDLFEGILQAGS IVENLRTY QP FVYIPM ELRGGAWVVVDS+IN +HIEMYA+
Sbjct: 1977 GGQRDLFEGILQAGSNIVENLRTYNQPAFVYIPMGGELRGGAWVVVDSKINPEHIEMYAE 2036
Query: 2037 RTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKN-NRTLAMVESLQQQ 2095
RTAKGNVLEPEG++EIKFR KEL ECM RLD +LI L +L+E K N L+ +++ ++
Sbjct: 2037 RTAKGNVLEPEGLVEIKFRPKELEECMLRLDPELIKLSTRLREMKKENAGLSEMDTTRRS 2096
Query: 2096 IKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESS 2155
I AR KQL+P YTQVAT+FAELHDTS RMAAKGVI +VVDW++SRSFF RRLRRRV E +
Sbjct: 2097 IIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEESRSFFYRRLRRRVTEDA 2156
Query: 2156 LVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQ 2215
L K + AAG+ L+ KSA++ IK+W+L S + G W +DE FF WKDD NYE +++
Sbjct: 2157 LAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFAWKDDPTNYENQLE 2216
Query: 2216 ELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
EL ++V L+ + S D++ALP GL+ +L+K++PS REQ+I + + L
Sbjct: 2217 ELKAERVSKWLSRLAES-PDVKALPNGLSIVLNKMNPSKREQVIDGLRQLL 2266
|
Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|B9FK36|ACC2_ORYSJ Acetyl-CoA carboxylase 2 OS=Oryza sativa subsp. japonica GN=ACC2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 3255 bits (8440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1578/2274 (69%), Positives = 1871/2274 (82%), Gaps = 46/2274 (2%)
Query: 2 SEAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAV 61
SE R + G + NG IN R A++S+V EFC +LGGK PIHS+L+ANNGMAA
Sbjct: 90 SEDPRGPTVPGSYQMNGIINETHNGRH-ASVSKVVEFCTALGGKTPIHSVLVANNGMAAA 148
Query: 62 KFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQ 121
KF+RS+RTWA +TFG+EKAI L+AMATPED+RINAEHIRIADQFVEVPGGTNNNNYANVQ
Sbjct: 149 KFMRSVRTWANDTFGSEKAIQLIAMATPEDLRINAEHIRIADQFVEVPGGTNNNNYANVQ 208
Query: 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181
LIVE+AE T V AVWPGWGHASE PELPD L+ KGI+FLGPPA+SM ALGDK+GS+LIAQ
Sbjct: 209 LIVEIAERTGVSAVWPGWGHASENPELPDALTAKGIVFLGPPASSMHALGDKVGSALIAQ 268
Query: 182 AANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG 241
AA VPTL WSGSHV++P E CL +IPD++YR+ACV TTEEA+ASCQVVGYPAMIKASWGG
Sbjct: 269 AAGVPTLAWSGSHVEVPLECCLDSIPDEMYRKACVTTTEEAVASCQVVGYPAMIKASWGG 328
Query: 242 GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSR 301
GGKGIRKVHNDDEVR LFKQVQGEVPGSPIFIM++A+QSRHLEVQLLCDQYGNVAALHSR
Sbjct: 329 GGKGIRKVHNDDEVRTLFKQVQGEVPGSPIFIMRLAAQSRHLEVQLLCDQYGNVAALHSR 388
Query: 302 DCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361
DCSVQRRHQKIIEEGP+TVAP ETVK+LEQAARRLAK V YVGAATVEYLYSMETGEYYF
Sbjct: 389 DCSVQRRHQKIIEEGPVTVAPRETVKELEQAARRLAKAVGYVGAATVEYLYSMETGEYYF 448
Query: 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTS 421
LELNPRLQVEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYGM HGG YD WRKT+
Sbjct: 449 LELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMNHGGGYDLWRKTA 508
Query: 422 VIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKS 481
+ATPF+FD+ +S PKGHCVAVR+TSEDPDDGFKPT GKV+E+SFKSKPNVWAYFSVKS
Sbjct: 509 ALATPFNFDEVDSKWPKGHCVAVRITSEDPDDGFKPTGGKVKEISFKSKPNVWAYFSVKS 568
Query: 482 GGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRE 541
GGGIHEF+DSQFGHVFA+G +R+ AI M L LKE+QIRGEI +NVDYT+DLL+ASD+RE
Sbjct: 569 GGGIHEFADSQFGHVFAYGTTRSAAITTMALALKEVQIRGEIHSNVDYTVDLLNASDFRE 628
Query: 542 NKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHI 601
NKIHTGWLD+RIAMRV+AERPPWY+SVVGGALYK ++ A VSDY+GYL KGQIPPKHI
Sbjct: 629 NKIHTGWLDTRIAMRVQAERPPWYISVVGGALYKTVTANTATVSDYVGYLTKGQIPPKHI 688
Query: 602 SLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVV 661
SLV + V+LNI+G KY ID VR G GSY LRMN S ++A + L DGGLLMQLDGNSHV+
Sbjct: 689 SLVYTTVALNIDGKKYTIDTVRSGHGSYRLRMNGSTVDANVQILCDGGLLMQLDGNSHVI 748
Query: 662 YAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721
YAEEEA+GTRLLIDG+TC+LQNDHDPSKL+AETPCKLLR+LV+DG+H+DAD PYAEVEVM
Sbjct: 749 YAEEEASGTRLLIDGKTCMLQNDHDPSKLLAETPCKLLRFLVADGAHVDADVPYAEVEVM 808
Query: 722 KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAI 781
KMCMPLLSPASGV+ M+EGQAMQAG+LIARLDLDDPSAV++AEPF +FP +G P A
Sbjct: 809 KMCMPLLSPASGVIHVVMSEGQAMQAGDLIARLDLDDPSAVKRAEPFEDTFPQMGLPIAA 868
Query: 782 SGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPK 841
SG+VH+ CAASLNA RMILAGYEH+I++VV L+ CLD+PELP LQW+E M+VL+TRLP+
Sbjct: 869 SGQVHKLCAASLNACRMILAGYEHDIDKVVPELVYCLDTPELPFLQWEELMSVLATRLPR 928
Query: 842 DLKNELESKCKEFE-RISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLV 900
+LK+ELE K +E++ + S DFPA +LR ++E +L ++KE+ + ERL+EPLMSL+
Sbjct: 929 NLKSELEGKYEEYKVKFDSGIINDFPANMLRVIIEENLACGSEKEKATNERLVEPLMSLL 988
Query: 901 KSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQ 960
KSYEGGRESHA +V+SLFEEYL VEELFSD IQ+DVIERLRLQ+ KDL KVVDIVLSHQ
Sbjct: 989 KSYEGGRESHAHFVVKSLFEEYLYVEELFSDGIQSDVIERLRLQHSKDLQKVVDIVLSHQ 1048
Query: 961 GVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1020
V+ K KLIL+LME LVYPNPAAYRD+LIRFS+LNH Y +LALKAS+LLEQTKLSELR+
Sbjct: 1049 SVRNKTKLILKLMESLVYPNPAAYRDQLIRFSSLNHKAYYKLALKASELLEQTKLSELRA 1108
Query: 1021 SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRR 1080
IARSLSELEMFTE+ + + KR+ AI E MEDLV+APL VEDAL+ LFD SD T+Q+R
Sbjct: 1109 RIARSLSELEMFTEESKGLSMHKREIAIKESMEDLVTAPLPVEDALISLFDCSDTTVQQR 1168
Query: 1081 VVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSE 1140
V+ETY+ RLYQP+LVK S++M+W G+IA WEF E H + +NG +
Sbjct: 1169 VIETYIARLYQPHLVKDSIKMKWIESGVIALWEFPEGHFDARNGG----------AVLGD 1218
Query: 1141 RKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMS 1200
++WGAMVI+KSL+S + AL+ET+H T+S GNMMHIAL+G +N+M
Sbjct: 1219 KRWGAMVIVKSLESLSMAIRFALKETSH-----------YTSSEGNMMHIALLGADNKMH 1267
Query: 1201 LLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSP 1260
++Q+SGD+ +RI KL ILK+ + LH++GV IS I+QRDE R MR +F WS
Sbjct: 1268 IIQESGDD---ADRIAKLPLILKDNV--TDLHASGVKTISFIVQRDEARMTMRRTFLWSD 1322
Query: 1261 EKFYYEEEPLLRHLEPPLSIYLELDKL--KGYDNIQYTLSRDRQWHLYTV--VDKPLPIR 1316
EK YEEEP+LRH+EPPLS LELDKL KGY+ ++YT SRDRQWH+YT+ + P +
Sbjct: 1323 EKLSYEEEPILRHVEPPLSALLELDKLKVKGYNEMKYTPSRDRQWHIYTLRNTENPKMLH 1382
Query: 1317 RMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNAS 1376
R+F RTLVRQP+ ++ F S + DM A+ +SFTS +LRSLM A+EELEL+ +
Sbjct: 1383 RVFFRTLVRQPSVSNKFSSGQIGDMEVGSAEEPLSFTSTSILRSLMTAIEELELH----A 1438
Query: 1377 VKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHK 1436
+++ H+ MYL +L+EQK+ DLVP +D GQ+E +LL+E+A +IH VG RMH
Sbjct: 1439 IRTGHSHMYLHVLKEQKLLDLVPVSGNTVLDVGQDEATAYSLLKEMAMKIHELVGARMHH 1498
Query: 1437 LGVCEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYH-SVAVRG 1495
L VC+WEVKL + G A+G WR+V TNVT HTC V IYRE+ED +VYH + G
Sbjct: 1499 LSVCQWEVKLKLDCDGPASGTWRIVTTNVTSHTCTVDIYREMEDKESRKLVYHPATPAAG 1558
Query: 1496 LLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRP---K 1552
LHGV +N YQ L V+D KR AR + TTYCYDFPLAFETA+ +SW+S
Sbjct: 1559 PLHGVALNNPYQPLSVIDLKRCSARNNRTTYCYDFPLAFETAVRKSWSSSTSGASKGVEN 1618
Query: 1553 DKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVAN 1612
+ +K TEL FAD G+WGTPLV ++R GLN+IGMVAW ++M TPEFPSGR I++VAN
Sbjct: 1619 AQCYVKATELVFADKHGSWGTPLVQMDRPAGLNDIGMVAWTLKMSTPEFPSGREIIVVAN 1678
Query: 1613 DVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDEL 1672
D+TF+AGSFGPREDAFF AVT+LAC KKLPLIYLAANSGARIG+A+EVK+CF +GW+D+
Sbjct: 1679 DITFRAGSFGPREDAFFEAVTNLACEKKLPLIYLAANSGARIGIADEVKSCFRVGWSDDG 1738
Query: 1673 NPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAI 1732
+P+RGF Y+YL+ EDYARIG+SVIAH+M+L+SGE RWV+DS+VGKEDGLGVEN+ GS AI
Sbjct: 1739 SPERGFQYIYLSEEDYARIGTSVIAHKMQLDSGEIRWVIDSVVGKEDGLGVENIHGSAAI 1798
Query: 1733 AGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVY 1792
A AYSRAYKETFTLT+VTGRTVGIGAYLARLG+RCIQRLDQPIILTG+SALNKLLGREVY
Sbjct: 1799 ASAYSRAYKETFTLTFVTGRTVGIGAYLARLGIRCIQRLDQPIILTGYSALNKLLGREVY 1858
Query: 1793 SSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPV 1852
SSHMQLGGPKIMATNGVVHLTVSDDLEG+S IL+WLSYVP +IGG LP+ +PLDPPDRPV
Sbjct: 1859 SSHMQLGGPKIMATNGVVHLTVSDDLEGVSNILRWLSYVPAYIGGPLPVTTPLDPPDRPV 1918
Query: 1853 EYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIV 1912
Y+PENSCDPRAAI G D+ GKW+GG+FDKDSFVET EGWA+TVVTGRA+LGGIPVG++
Sbjct: 1919 AYIPENSCDPRAAIRGVDDSQGKWLGGMFDKDSFVETFEGWAKTVVTGRAKLGGIPVGVI 1978
Query: 1913 AVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANW 1972
AVETQT+MQ IPADPGQLDS E+ VP+AGQVWFPDSATKTAQAL+DFNRE LPLFILANW
Sbjct: 1979 AVETQTMMQTIPADPGQLDSREQSVPRAGQVWFPDSATKTAQALLDFNREGLPLFILANW 2038
Query: 1973 RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIE 2032
RGFSGGQRDLFEGILQAGSTIVENLRTY QP FVYIPM AELRGGAWVVVDS+IN D IE
Sbjct: 2039 RGFSGGQRDLFEGILQAGSTIVENLRTYNQPAFVYIPMAAELRGGAWVVVDSKINPDRIE 2098
Query: 2033 MYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESL 2092
YA+RTAKGNVLEP+G+IEIKFR++EL +CM RLD LIDL AKL+ A N + A +SL
Sbjct: 2099 CYAERTAKGNVLEPQGLIEIKFRSEELQDCMSRLDPTLIDLKAKLEVANKNGS-ADTKSL 2157
Query: 2093 QQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVA 2152
Q+ I+AR KQL+P YTQ+A +FAELHDTSLRMAAKGVIK+VVDW++SRSFF +RLRRR++
Sbjct: 2158 QENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWEESRSFFYKRLRRRIS 2217
Query: 2153 ESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEK 2212
E L K + A AG+ +H+ AIE+IK+W+ S A W DD+ F W D+ NY+
Sbjct: 2218 EDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAE-----WDDDDAFVAWMDNPENYKD 2272
Query: 2213 KVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
+Q L Q+V L+++ +S+SDLQALPQGL+ LL K+DPS R QL+ EI K L
Sbjct: 2273 YIQYLKAQRVSQSLSSLSDSSSDLQALPQGLSMLLDKMDPSRRAQLVEEIRKVL 2326
|
Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|P78820|ACAC_SCHPO Acetyl-CoA carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/2322 (40%), Positives = 1359/2322 (58%), Gaps = 179/2322 (7%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
++PA +V ++ S GG I SILIANNG+AAVK IRSIR WAYETF E+AI M
Sbjct: 50 KAPAG--KVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKFTVM 107
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
ATP+D+++NA++IR+ADQ+VEVPGG+NNNNYANV+LIV++AE V AVW GWGHASE P
Sbjct: 108 ATPDDLKVNADYIRMADQYVEVPGGSNNNNYANVELIVDIAERMNVHAVWAGWGHASENP 167
Query: 147 ELPDTLS--TKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS---HVKIPPES 201
+LP+ LS +K I+F+GPP ++M +LGDKI S+++AQ+A VP + WSG+ V+I E+
Sbjct: 168 KLPEMLSASSKKIVFIGPPGSAMRSLGDKISSTIVAQSARVPCMSWSGNELDQVRIDEET 227
Query: 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261
+VT+ DDVY++AC+ + EE IA + +GYP MIKAS GGGGKGIR+V + ++ F+Q
Sbjct: 228 NIVTVDDDVYQKACIRSAEEGIAVAEKIGYPVMIKASEGGGGKGIRQVTSTEKFAQAFQQ 287
Query: 262 VQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVA 321
V E+PGSP+F+MK+A Q+RHLEVQ+L DQYGN +L RDCSVQRRHQKIIEE P+T+A
Sbjct: 288 VLDELPGSPVFVMKLAGQARHLEVQILADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIA 347
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEI 381
P T ++E+AA RL + V Y A T+EYLY E +YFLELNPRLQVEHP TE ++ +
Sbjct: 348 PAATFHEMERAAVRLGELVGYASAGTIEYLYEPENDRFYFLELNPRLQVEHPTTEMVSGV 407
Query: 382 NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441
NLPAAQ+ V MG+PL +IP IR YG+ G + P F + PKGHC
Sbjct: 408 NLPAAQLQVAMGLPLSRIPHIRELYGLPRDGDSEI---DFFFQNPESFKVQKVPTPKGHC 464
Query: 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501
VA R+TSEDP +GFKP+SG +++L+F+S NVW YFSV + GGIHEF+DSQFGH+F+F E
Sbjct: 465 VACRITSEDPGEGFKPSSGMIKDLNFRSSSNVWGYFSVGTAGGIHEFADSQFGHIFSFAE 524
Query: 502 SRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER 561
SR + +MV+ LKE+ IRG+ RT V+Y + LL ++ EN+ TGWLD IA +V + R
Sbjct: 525 SRESSRKSMVVALKELSIRGDFRTTVEYLVRLLETKEFSENEFTTGWLDRLIAQKVTSAR 584
Query: 562 PPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDM 621
P L+VV GAL +A A++ + YLE+GQ+P + + + ++YR
Sbjct: 585 PDKMLAVVCGALVRAHATADTQYRAFKSYLERGQVPSREFLKNVYDIEFIYDNTRYRFTA 644
Query: 622 VRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLL 681
R PGSY L +N S A + +L DGGLL+ L+G+S+ VY +E GTR+ ID +C+L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNLSCML 704
Query: 682 QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAE 741
+ ++DP++L +P KL+R+LV G HI A YAEVEVMKM MPL++ GV+Q
Sbjct: 705 EQENDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQP 764
Query: 742 GQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILA 801
G ++ AG+++ L LDDPS V A PF G P G P K QR A L IL
Sbjct: 765 GASLDAGDILGILTLDDPSRVTHALPFDGQLPNWGEPQIAGNKPCQRYHALLCILLDILK 824
Query: 802 GYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISS 859
GY++ I + L + ELP +W + L R+ L S ++ +
Sbjct: 825 GYDNQIILNSTYNEFVEVLRNHELPYSEWSAHYSALVNRISPVLDKLFVSIIEK----AR 880
Query: 860 SQNVDFPAKLLRGVLEAHLLSCADKERGSQERL---IEPLMSLVKSYEGGRESHARVIVQ 916
S+ +FPAK L ++ + C + + ++L I PL+ ++ Y+ G + H +++
Sbjct: 881 SRKAEFPAKQLEVAIQTY---CDGQNLATTQQLKVQIAPLLKIISDYKDGLKVHEYNVIK 937
Query: 917 SLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLME 974
L EEY +VE+LFS ++ + DVI RLR + K D+ KV+ + LSH + KN L++ +++
Sbjct: 938 GLLEEYYNVEKLFSGINKREEDVILRLRDENKDDVDKVIALALSHSRIGSKNNLLITILD 997
Query: 975 QLVYPNPAA-----YRDKLIRFSALNHTNYSELALKASQLL---EQTKLSE--------L 1018
L+ P+ + D L + + L+ S+++LKA +LL L+E L
Sbjct: 998 -LMKSEPSTFVSLYFNDILRKLTDLDSRVTSKVSLKARELLITCAMPSLNERFSQMEHIL 1056
Query: 1019 RSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQ 1078
+SS+ S F+ S+D +++L+ + V D L F H+D +
Sbjct: 1057 KSSVVESHYGDAKFSHRTPSLDI----------LKELIDSKYTVFDVLPAFFCHTDPWVS 1106
Query: 1079 RRVVETYVRRLYQPYLVKGSVRMQWHR---CGLIASWEFLEEH--------IERKNGPED 1127
+E YVRR Y+ Y V + + +H + +W F + H NG
Sbjct: 1107 LAALEVYVRRAYRAYSV---LEINYHTEAGTPYVLTWRF-QLHSSGAPGLGANSTNGSNF 1162
Query: 1128 QTPEQPLVEKHSER-------------------KWGAMVIIKSLQSFPDILSAALRETAH 1168
P E + R ++G M+ ++ + L+ A+
Sbjct: 1163 PASTTPSYENSNRRLQSVSDLSWYVNKTDSEPFRFGTMIAAETFDELENNLALAIDRLPL 1222
Query: 1169 SRN---------DSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQERINKLA 1219
SRN + S + T N++++AL +GD D + ++KL
Sbjct: 1223 SRNYFNAGLTLDGNSSSANDNTQELTNVVNVALTS----------TGDLDDSA-IVSKLN 1271
Query: 1220 KILKEQEVGSGLHSAGVGVISCIIQR-DEGRAPMRHSFHWSPEK-----FYYEEEPLLRH 1273
+IL + L V ++ + R ++ P +++ S E+ +Y E+ +RH
Sbjct: 1272 QIL--SDFRDDLLEHNVRRVTIVGGRINKSAYPSYYTYRVSAEQKDGNLVHYNEDERIRH 1329
Query: 1274 LEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPI-RRMFLRTLVRQPTSNDG 1332
+EP L+ LEL +L + NI+ + + H+Y K + +R F R LVR D
Sbjct: 1330 IEPALAFQLELGRLSNF-NIEPVFTDNHNIHVYRATAKNMDTDKRFFTRALVRPGRLRDE 1388
Query: 1333 FMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILREQ 1392
+ A++ +S T R ++ ++ A+E + H Q L +
Sbjct: 1389 IPT----------AEYLISETHR-LINDILDALEVI-----------GHEQTDLNHI--- 1423
Query: 1393 KINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAYSG 1452
+ + + Q E A+ LE R R+ +L V E+++ +
Sbjct: 1424 ----FINFTPAFGLAPKQVEAALGGFLERFGR--------RLWRLRVTAAEIRI-ICTDP 1470
Query: 1453 QANGAW--RVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLG 1510
N + RV+++NV+G V IY E++ T ++ ++ S+ G +H ++ Y +
Sbjct: 1471 STNTLFPLRVIISNVSGFVVNVEIYAEVK-TENNSWIFKSIGQPGSMHLRPISTPYPTKE 1529
Query: 1511 VLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELK--FADDS 1568
L +R A+ TT+ YDFP F A SW + PN R K + E K AD+
Sbjct: 1530 WLQPRRYKAQLMGTTFVYDFPELFRRAFTDSW-KKVPNGRSKVTIPQNMFECKELVADEH 1588
Query: 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAF 1628
G L V R PG N+ GMVAWC+ + TPE+P+GR I++VAND+TF+ GSFGP+ED +
Sbjct: 1589 GV----LQEVNREPGTNSCGMVAWCITVKTPEYPNGRKIIVVANDITFQIGSFGPQEDEY 1644
Query: 1629 FLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDY 1688
F VT LA + +P IYLAANSGARIGVA+E+ F I W D +P++GF+Y+YLTPE Y
Sbjct: 1645 FYKVTQLARQRGIPRIYLAANSGARIGVADEIVPLFNIAWVDPDSPEKGFDYIYLTPEAY 1704
Query: 1689 ARIGSS----VIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETF 1744
R+ + E+ E+GE R + +I+G +GLGVE L GSG IAG SRAY + F
Sbjct: 1705 ERLQKENPNILTTEEVVTETGELRHKITTIIGSSEGLGVECLRGSGLIAGVTSRAYNDIF 1764
Query: 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIM 1804
T T VT R VGIGAYL RLG R +Q QPIILTG ALNK+LGREVY+S++QLGG ++M
Sbjct: 1765 TCTLVTCRAVGIGAYLVRLGQRAVQIEGQPIILTGAPALNKVLGREVYTSNLQLGGTQVM 1824
Query: 1805 ATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLP-ENSCDPR 1863
NG+ HLT DD +GIS I+ W+SY+P +PI D DR VE+ P +N DPR
Sbjct: 1825 HRNGISHLTSQDDFDGISKIVNWISYIPDKRNNPVPISPSSDTWDRDVEFYPSQNGYDPR 1884
Query: 1864 AAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVI 1923
I G D + ++ G+FDK SF ETL GWA+TVV GRAR+GGIP G++AVET+T+ +
Sbjct: 1885 WLIAGKEDEDS-FLYGLFDKGSFQETLNGWAKTVVVGRARMGGIPTGVIAVETRTIENTV 1943
Query: 1924 PADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDL 1982
PADP DS E+V+ +AGQVW+P+SA KTAQA+ DFN E+LPLFILANWRGFSGGQRD+
Sbjct: 1944 PADPANPDSTEQVLMEAGQVWYPNSAFKTAQAINDFNHGEQLPLFILANWRGFSGGQRDM 2003
Query: 1983 FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2042
F +L+ GS IV+ L +YKQPVFVYIP +ELRGG+WVVVD IN D +EMYAD ++
Sbjct: 2004 FNEVLKYGSYIVDALASYKQPVFVYIPPFSELRGGSWVVVDPTINEDQMEMYADEESRAG 2063
Query: 2043 VLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQ 2102
VLEPEGM+ IKFR ++LL M R D K L +L+ +++ + + +++ ++ RE++
Sbjct: 2064 VLEPEGMVSIKFRREKLLSLMRRCDHKYASLCNELK--RDDLSADDLSTIKVKLMEREQK 2121
Query: 2103 LLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTA 2162
L+P Y Q++ FA+LHD RM AK V+++ + W ++R FF RLRRR+ E ++ +T
Sbjct: 2122 LMPIYQQISIHFADLHDRVGRMVAKKVVRKPLKWTEARRFFYWRLRRRLNEHYALQKITQ 2181
Query: 2163 AAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTW-KDDSRNYEKKVQELGVQK 2221
LT + + E +++W+ E GK+ D++ W ++ + + K+ QEL
Sbjct: 2182 LIPS-LTIRESREYLQKWY---EEWCGKQDWDESDKSVVCWIEEHNDDLSKRTQELKSTY 2237
Query: 2222 VLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEIS 2263
+L+ + SD + + LA +L+++D + +++L G+++
Sbjct: 2238 YSERLSKL--LRSDRKGMIDSLAQVLTELDENEKKELAGKLA 2277
|
Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q13085|ACACA_HUMAN Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1613 bits (4178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/2307 (40%), Positives = 1345/2307 (58%), Gaps = 184/2307 (7%)
Query: 7 RSAMAGL-----GRGNGHINGA--VPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
RS+M+GL GR I+ + SPA EF GG K I +LIANNG+A
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPA------EFVTRFGGNKVIEKVLIANNGIA 129
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 130 AVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 189
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LI+++A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++
Sbjct: 190 VELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIV 249
Query: 180 AQAANVPTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAM 234
AQ A +PTLPWSGS +++ + ++ +P ++Y + V ++ + + + VGYP M
Sbjct: 250 AQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVM 309
Query: 235 IKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGN 294
IKAS GGGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN
Sbjct: 310 IKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGN 369
Query: 295 VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354
+L RDCSVQRRHQKIIEE P T+A + +EQ A +LAK V YV A TVEYLYS
Sbjct: 370 AISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQ 429
Query: 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVY 414
+ G +YFLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G
Sbjct: 430 D-GSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG-- 486
Query: 415 DAWRKTSVIATPFDF-DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473
+P DF D A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NV
Sbjct: 487 ---------DSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNV 537
Query: 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDL 533
W YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I L
Sbjct: 538 WGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKL 597
Query: 534 LHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEK 593
L ++ N+I TGWLD IA +V+AERP L VV GAL+ A S VS+++ LE+
Sbjct: 598 LETESFQMNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSVSNFLHSLER 657
Query: 594 GQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ 653
GQ+ P H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+
Sbjct: 658 GQVLPAHTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLS 717
Query: 654 LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADT 713
DG+S+ Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A
Sbjct: 718 YDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQ 777
Query: 714 PYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFP 773
YAE+EVMKM M L + SG + + G A+ G ++A++ LD+PS V++AE GS P
Sbjct: 778 CYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVLAKMQLDNPSKVQQAELHTGSLP 837
Query: 774 ILGPPTAISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPL 825
+ TA+ G K+H+ L+ ++ GY +++ V+ L+ L P LPL
Sbjct: 838 RIQ-STALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPL 896
Query: 826 LQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK- 884
L+ Q+ M +S R+P +++ ++ + ++ +S FP++ + +L++H + K
Sbjct: 897 LELQDIMTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKS 956
Query: 885 ERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQ 944
ER + ++ LV+ Y G H + +V L +YL VE F + + LR +
Sbjct: 957 EREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREE 1016
Query: 945 YKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPA---AYRDKLIRFSALNHTNYSE 1001
K D+ V++ + SH V +KN L+ L++QL +P + L + L+ T ++
Sbjct: 1017 NKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAK 1076
Query: 1002 LALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVS 1057
+AL+A Q+L + L ELR + S LS ++M+ E ++ L+
Sbjct: 1077 VALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCIENLQKLIL 1125
Query: 1058 APLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL-- 1115
+ ++ D L F HS+ ++ +E YVRR Y Y + Q + ++F+
Sbjct: 1126 SETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLP 1185
Query: 1116 EEHIERKNGPE--------------------------DQTPEQPLVEKHSERKWGAMVII 1149
H R N P D + P ++ G MV
Sbjct: 1186 TSHPNRGNIPTLNRMSFSSNLNHYGMTHVASVSDVLLDNSFTPPC------QRMGGMVSF 1239
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL-----VGMNNQMSLLQD 1204
++ + F I + S Q+ ++ H +L V + + +L
Sbjct: 1240 RTFEDFVRIFDEVM--------GCFSDSPPQSPTFPEAGHTSLYDEDKVPRDEPIHILNV 1291
Query: 1205 SGDEDQAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHS----FHW 1258
+ D E ++LA + +E Q+ + L G+ ++ ++ + + R + + FH
Sbjct: 1292 AIKTDCDIED-DRLAAMFREFTQQNKATLVDHGIRRLTFLVAQKDFRKQVNYEVDRRFHR 1350
Query: 1259 SPEKFY-------YEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLY----- 1306
KF+ +EE+ + RHLEP L+ LEL++++ +D + + + HLY
Sbjct: 1351 EFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFD-LTAIPCANHKMHLYLGAAK 1409
Query: 1307 TVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366
V + R F+R ++R SD+ T A + + R L+ AM+
Sbjct: 1410 VEVGTEVTDYRFFVRAIIRH------------SDLVTKEA--SFEYLQNEGERLLLEAMD 1455
Query: 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREI 1426
ELE+ +N +V++D ++L + VP V +D + +EE R +
Sbjct: 1456 ELEVAFNNTNVRTDCNHIFL---------NFVP---TVIMDPSK--------IEESVRSM 1495
Query: 1427 HATVGVRMHKLGVCEWEVKLWMAYSGQANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHT 1485
G R+ KL V + E+K+ + + R+ +TN +G+ + +Y+E+ D+
Sbjct: 1496 VMRYGSRLWKLRVLQAELKINIRLTPTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQ 1555
Query: 1486 VVYHSVAVR-GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWAS 1544
+++ + + G LHG+ +N Y + +L KR A+ TTY YD P F +L + W S
Sbjct: 1556 IMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWES 1615
Query: 1545 Q----FPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPE 1600
F P +L TEL DD G LV + R PG N IGMVAW M +PE
Sbjct: 1616 MSTQAFLPSPPLPSDMLTYTELVL-DDQGQ----LVHMNRLPGGNEIGMVAWKMTFKSPE 1670
Query: 1601 FPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
+P GR I+++ ND+T++ GSFGP+ED FL ++LA A+ +P IY++ANSGARIG+AEE+
Sbjct: 1671 YPEGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVSANSGARIGLAEEI 1730
Query: 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLES-GETRWVVDSIVGKED 1719
+ F + W D +P +G+ Y+YLTP+DY R+ + H +E GE+R+ + I+GKE+
Sbjct: 1731 RHMFHVAWVDPEDPYKGYRYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEE 1790
Query: 1720 GLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779
G+G ENL GSG IAG S AY E T++ VT R +GIGAYL RLG R IQ + +ILTG
Sbjct: 1791 GIGPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTG 1850
Query: 1780 FSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGAL 1839
ALNK+LGREVY+S+ QLGG +IM NGV H TV DD EG+ +L WLSY+P + ++
Sbjct: 1851 AGALNKVLGREVYTSNNQLGGIQIMHNNGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSV 1910
Query: 1840 PIISPLDPPDRPVEYLPENS-CDPRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWART 1896
P+++ DP DR +E++P + DPR + G G+W+ G FD SF E ++ WA+T
Sbjct: 1911 PLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1970
Query: 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAL 1956
VV GRARLGGIPVG+VAVET+TV IPADP LDS +++ QAGQVWFPDSA KT QA+
Sbjct: 1971 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2030
Query: 1957 MDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016
DFNRE LPL + ANWRGFSGG +D+++ +L+ G+ IV+ LR QPV VYIP AELRG
Sbjct: 2031 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECCQPVLVYIPPQAELRG 2090
Query: 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAK 2076
G+WVV+DS IN H+EMYADR ++G+VLEPEG +EIKFR K+L++ M R+D I L +
Sbjct: 2091 GSWVVIDSSINPRHMEMYADRESRGSVLEPEGTVEIKFRRKDLVKTMRRVDPVYIHLAER 2150
Query: 2077 LQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136
L + A + L+ ++K RE+ L+P Y QVA +FA+LHDT RM KGVI +++DW
Sbjct: 2151 L--GTPELSTAERKELENKLKEREEFLIPIYHQVAVQFADLHDTPGRMQEKGVISDILDW 2208
Query: 2137 DKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLD 2196
SR+FF RLRR + E LVK A LT M+++WF++ E K W +
Sbjct: 2209 KTSRTFFYWRLRRLLLE-DLVKKKIHNANPELTDGQIQAMLRRWFVEVE-GTVKAYVWDN 2266
Query: 2197 DETFFTWKDDSRNYEKKVQELGVQKVL 2223
++ W + ++ +E GV V+
Sbjct: 2267 NKDLAEWLE-----KQLTEEDGVHSVI 2288
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|O00763|ACACB_HUMAN Acetyl-CoA carboxylase 2 OS=Homo sapiens GN=ACACB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1609 bits (4167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/2270 (40%), Positives = 1332/2270 (58%), Gaps = 176/2270 (7%)
Query: 7 RSAMAGL---GRGNGH----INGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
R +M+GL RG H ++ + SPA EF GG + I +LIANNG+A
Sbjct: 218 RPSMSGLHLVKRGREHKKLDLHRDFTVASPA------EFVTRFGGDRVIEKVLIANNGIA 271
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR WAYE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 272 AVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 331
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LIV++A+ V AVW GWGHASE P+LP+ L G+ FLGPP+ +M ALGDKI S+++
Sbjct: 332 VELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVV 391
Query: 180 AQAANVPTLPWSGSHVKIP------PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPA 233
AQ VPTLPWSGS + + + +++P+DVY + CV +E + + + +G+P
Sbjct: 392 AQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPL 451
Query: 234 MIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYG 293
MIKAS GGGGKGIRK + ++ LF+QVQ E+PGSPIF+MK+A +RHLEVQ+L DQYG
Sbjct: 452 MIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYG 511
Query: 294 NVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353
N +L RDCS+QRRHQKI+EE P T+APL + +EQ A RLAK V YV A TVEYLYS
Sbjct: 512 NAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS 571
Query: 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGV 413
+ G ++FLELNPRLQVEHP TE IA++NLPAAQ+ + MG+PL ++ +IR YG GV
Sbjct: 572 QD-GSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGV 630
Query: 414 YDAWRKTSVIATPFDFDQAESTRP--KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKP 471
TP F + S P +GH +A R+TSE+PD+GFKP+SG VQEL+F+S
Sbjct: 631 -----------TPISF-ETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSK 678
Query: 472 NVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTI 531
NVW YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I
Sbjct: 679 NVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLI 738
Query: 532 DLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYL 591
+LL ++ N I TGWLD IA +V+AE+P L VV GAL A A ++D++ L
Sbjct: 739 NLLETESFQNNDIDTGWLDYLIAEKVQAEKPDIMLGVVCGALNVADAMFRTCMTDFLHSL 798
Query: 592 EKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLL 651
E+GQ+ P L V L G KY + + R+ + L MN IE + H L DGGLL
Sbjct: 799 ERGQVLPADSLLNLVDVELIYGGVKYILKVARQSLTMFVLIMNGCHIEIDAHRLNDGGLL 858
Query: 652 MQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDA 711
+ +GNS+ Y +EE R+ I +TC+ + ++DP+ L + + KL +Y V DG H++A
Sbjct: 859 LSYNGNSYTTYMKEEVDSYRITIGNKTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEA 918
Query: 712 DTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771
+ YAE+EVMKM M L G +++ G ++AG ++ARL+LDDPS V AEPF G
Sbjct: 919 GSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDDPSKVHPAEPFTGE 978
Query: 772 FPILGPPTAISGKVHQRCAASLNAARMILAG-------YEHNIEEVVQNLLNCLDSPELP 824
P + K+HQ + L +++G + ++E VQ L+ L P LP
Sbjct: 979 LPAQQTLPILGEKLHQVFHSVLENLTNVMSGFCLPEPVFSIKLKEWVQKLMMTLRHPSLP 1038
Query: 825 LLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK 884
LL+ QE M ++ R+P ++ + ++ +S FP++ + +L+ H A
Sbjct: 1039 LLELQEIMTSVAGRIPAPVEKSVRRVMAQYASNITSVLCQFPSQQIATILDCH---AATL 1095
Query: 885 ERGSQERLI----EPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIER 940
+R + + + ++ LV+ Y G + + +V L YL VE F +
Sbjct: 1096 QRKADREVFFINTQSIVQLVQRYRSGIRGYMKTVVLDLLRRYLRVEHHFQQAHYDKCVIN 1155
Query: 941 LRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLI----RFSALNH 996
LR Q+K D+ +V+D + SH V +KN+L++ L+++L P+P + D+LI + L+
Sbjct: 1156 LREQFKPDMSQVLDCIFSHAQVAKKNQLVIMLIDELCGPDP-SLSDELISILNELTQLSK 1214
Query: 997 TNYSELALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERM 1052
+ + ++AL+A Q+L + L ELR + S LS ++M+ E +
Sbjct: 1215 SEHCKVALRARQILIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCPENL 1263
Query: 1053 EDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASW 1112
+ L+ + + D L F H++ + +E YVRR Y Y + Q + +
Sbjct: 1264 KKLILSETTIFDVLPTFFYHANKVVCMASLEVYVRRGYIAYELNSLQHRQLPDGTCVVEF 1323
Query: 1113 EFL--EEHIERKNGPEDQTPEQPLVEKHSE------------RKWGAMVIIKSLQSFPDI 1158
+F+ H R P T P + +HS ++ GAMV + + F
Sbjct: 1324 QFMLPSSHPNRMTVPISIT--NPDLLRHSTELFMDSGFSPLCQRMGAMVAFRRFEDFTRN 1381
Query: 1159 LSAALRETAHSRNDSISKGSAQTASYG---------NMMHIALVGMNNQMSLLQDSGDED 1209
+ A+ D+ A+T+ Y +HI V + L ED
Sbjct: 1382 FDEVISCFANVPKDTPLFSEARTSLYSEDDCKSLREEPIHILNVSIQCADHL------ED 1435
Query: 1210 QAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEE 1267
+A L IL+ Q + L G+ I+ +I + E P +F E + E
Sbjct: 1436 EA------LVPILRTFVQSKKNILVDYGLRRITFLIAQ-EKEFPKFFTFRARDE---FAE 1485
Query: 1268 EPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK-----PLPIRRMFLRT 1322
+ + RHLEP L+ LEL++++ +D + + + HLY K + R F+R
Sbjct: 1486 DRIYRHLEPALAFQLELNRMRNFD-LTAVPCANHKMHLYLGAAKVKEGVEVTDHRFFIRA 1544
Query: 1323 LVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHA 1382
++R SD+ T A + + R L+ AM+ELE+ +N SV++D
Sbjct: 1545 IIRH------------SDLITKEA--SFEYLQNEGERLLLEAMDELEVAFNNTSVRTDCN 1590
Query: 1383 QMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEW 1442
++L + VP V +D + +EE R + G R+ KL V +
Sbjct: 1591 HIFL---------NFVP---TVIMDPFK--------IEESVRYMVMRYGSRLWKLRVLQA 1630
Query: 1443 EVKLWMAYSGQANGA-WRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLHGV 1500
EVK+ + + + R+ +TN +G+ + +Y+E+ D+ +++HS + G HG+
Sbjct: 1631 EVKINIRQTTTGSAVPIRLFITNESGYYLDISLYKEVTDSRSGNIMFHSFGNKQGPQHGM 1690
Query: 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVT 1560
+N Y + +L KR A+ TTY YDFP F AL + W S P+ PKD +L T
Sbjct: 1691 LINTPYVTKDLLQAKRFQAQTLGTTYIYDFPEMFRQALFKLWGS--PDKYPKD--ILTYT 1746
Query: 1561 ELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGS 1620
EL D G LV + R PG N +GMVA+ M T E+P GR ++++ ND+TF+ GS
Sbjct: 1747 ELVL-DSQGQ----LVEMNRLPGGNEVGMVAFKMRFKTQEYPEGRDVIVIGNDITFRIGS 1801
Query: 1621 FGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNY 1680
FGP ED +L +++A A+ +P IY+AANSGARIG+AEE+K F + W D +P +GF Y
Sbjct: 1802 FGPGEDLLYLRASEMARAEGIPKIYVAANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKY 1861
Query: 1681 VYLTPEDYARIGSSVIAHEMKL-ESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1739
+YLTP+DY RI S H + E GE+R+++ I+GK+DGLGVENL GSG IAG S A
Sbjct: 1862 LYLTPQDYTRISSLNSVHCKHIEEGGESRYMITDIIGKDDGLGVENLRGSGMIAGESSLA 1921
Query: 1740 YKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLG 1799
Y+E T++ VT R +GIGAYL RLG R IQ + IILTG SALNK+LGREVY+S+ QLG
Sbjct: 1922 YEEIVTISLVTCRAIGIGAYLVRLGQRVIQVENSHIILTGASALNKVLGREVYTSNNQLG 1981
Query: 1800 GPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS 1859
G +IM NGV H+TV DD EG+ IL+WLSY+P +PII+P DP DR +E+LP +
Sbjct: 1982 GVQIMHYNGVSHITVPDDFEGVYTILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRA 2041
Query: 1860 -CDPRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVET 1916
DPR + G G W G FD SF E + WA+TVVTGRARLGGIPVG++AVET
Sbjct: 2042 PYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTGRARLGGIPVGVIAVET 2101
Query: 1917 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 1976
+TV +PADP LDS +++ QAGQVWFPDSA KTAQA+ DFNRE+LPL I ANWRGFS
Sbjct: 2102 RTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAVKDFNREKLPLMIFANWRGFS 2161
Query: 1977 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD 2036
GG +D+++ +L+ G+ IV+ LR YKQP+ +YIP AELRGG+WVV+D+ IN IEMYAD
Sbjct: 2162 GGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIPPYAELRGGSWVVIDATINPLCIEMYAD 2221
Query: 2037 RTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQE---AKNNRTLAMVESLQ 2093
+ ++G VLEPEG +EIKFR K+L++ M R+D LM +L E + +R + L+
Sbjct: 2222 KESRGGVLEPEGTVEIKFRKKDLIKSMRRIDPAYKKLMEQLGEPDLSDKDR-----KDLE 2276
Query: 2094 QQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAE 2153
++KARE LLP Y QVA +FA+ HDT RM KGVI ++++W +R+F RLRR + E
Sbjct: 2277 GRLKAREDLLLPIYHQVAVQFADFHDTPGRMLEKGVISDILEWKTARTFLYWRLRRLLLE 2336
Query: 2154 SSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTW 2203
+ + + A+G+ L+H M+++WF+++E A K W +++ W
Sbjct: 2337 DQVKQEILQASGE-LSHVHIQSMLRRWFVETEGAV-KAYLWDNNQVVVQW 2384
|
ACC-beta may be involved in the provision of malonyl-CoA or in the regulation of fatty acid oxidation, rather than fatty acid biosynthesis. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q5SWU9|ACACA_MOUSE Acetyl-CoA carboxylase 1 OS=Mus musculus GN=Acaca PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1607 bits (4162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/2307 (40%), Positives = 1344/2307 (58%), Gaps = 184/2307 (7%)
Query: 7 RSAMAGL-----GRGNGHINGA--VPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
RS+M+GL GR I+ + SPA EF GG K I +LIANNG+A
Sbjct: 75 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPA------EFVTRFGGNKVIEKVLIANNGIA 128
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 129 AVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 188
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LI+++A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++
Sbjct: 189 VELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIV 248
Query: 180 AQAANVPTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAM 234
AQ A +PTLPWSGS +++ + ++ +P D+Y + V ++ + + + VGYP M
Sbjct: 249 AQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVM 308
Query: 235 IKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGN 294
IKAS GGGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN
Sbjct: 309 IKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGN 368
Query: 295 VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354
+L RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS
Sbjct: 369 AISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQ 428
Query: 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVY 414
+ G +YFLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G
Sbjct: 429 D-GSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWG-- 485
Query: 415 DAWRKTSVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473
DA P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NV
Sbjct: 486 DA---------PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNV 536
Query: 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDL 533
W YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I L
Sbjct: 537 WGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKL 596
Query: 534 LHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEK 593
L ++ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+
Sbjct: 597 LETESFQLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLER 656
Query: 594 GQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ 653
GQ+ P H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+
Sbjct: 657 GQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLS 716
Query: 654 LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADT 713
DG+S+ Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A
Sbjct: 717 YDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQ 776
Query: 714 PYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFP 773
YAE+EVMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P
Sbjct: 777 CYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLP 836
Query: 774 ILGPPTAISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPL 825
+ TA+ G K+H+ L+ ++ GY +++ V+ L+ L P LPL
Sbjct: 837 QI-QSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPL 895
Query: 826 LQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK- 884
L+ Q+ M +S R+P +++ ++ + ++ +S FP++ + +L++H + K
Sbjct: 896 LELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKS 955
Query: 885 ERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQ 944
ER + ++ LV+ Y G H + +V L +YL VE F + + LR +
Sbjct: 956 EREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREE 1015
Query: 945 YKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPA---AYRDKLIRFSALNHTNYSE 1001
K D+ V++ + SH V +KN L+ L++QL +P + L + L+ T ++
Sbjct: 1016 NKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAK 1075
Query: 1002 LALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVS 1057
+AL+A Q+L + L ELR + S LS ++M+ E ++ L+
Sbjct: 1076 VALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCIENLQKLIL 1124
Query: 1058 APLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL-- 1115
+ ++ D L F HS+ ++ +E YVRR Y Y + Q + ++F+
Sbjct: 1125 SETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLP 1184
Query: 1116 EEHIERKNGPE--------------------------DQTPEQPLVEKHSERKWGAMVII 1149
H R N P D P ++ G MV
Sbjct: 1185 TSHPNRGNIPTLNRMSFASNLNHYGMTHVASVSDVLLDNAFTPPC------QRMGGMVSF 1238
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL-----VGMNNQMSLLQD 1204
++ + F I + Q+ ++ H +L V + + +L
Sbjct: 1239 RTFEDFVRIFDEIM--------GCFCDSPPQSPTFPESGHTSLYDEDKVPRDEPIHILNV 1290
Query: 1205 SGDEDQAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMR----HSFHW 1258
+ D E ++LA + +E Q+ + L G+ ++ ++ + + R + FH
Sbjct: 1291 AIKTDGDIED-DRLAAMFREFTQQNKATLVEHGIRRLTFLVAQKDFRKQVNCEVDQRFHR 1349
Query: 1259 SPEKFY-------YEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLY----- 1306
KF+ +EE+ + RHLEP L+ LEL++++ +D + + + HLY
Sbjct: 1350 EFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFD-LTAIPCANHKMHLYLGAAK 1408
Query: 1307 TVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366
V + R F+R ++R SD+ T A + + R L+ AM+
Sbjct: 1409 VEVGTEVTDYRFFVRAIIRH------------SDLVTKEA--SFEYLQNEGERLLLEAMD 1454
Query: 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREI 1426
ELE+ +N +V++D ++L + VP V +D + +EE R +
Sbjct: 1455 ELEVAFNNTNVRTDCNHIFL---------NFVP---TVIMDPSK--------IEESVRSM 1494
Query: 1427 HATVGVRMHKLGVCEWEVKLWMAYSGQANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHT 1485
G R+ KL V + E+K+ + + R+ +TN +G+ + +Y+E+ D+
Sbjct: 1495 VMRYGSRLWKLRVLQAELKINIRLTTTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQ 1554
Query: 1486 VVYHSVAVR-GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWAS 1544
+++ + + G LHG+ +N Y + +L KR A+ TTY YD P F +L + W S
Sbjct: 1555 IMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWES 1614
Query: 1545 Q----FPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPE 1600
F P +L TEL DD G LV + R PG N IGMVAW M + +PE
Sbjct: 1615 MSTQAFLPSPPLPSDILTYTELVL-DDQGQ----LVHMNRLPGGNEIGMVAWKMSLKSPE 1669
Query: 1601 FPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
+P GR I+++ ND+T++ GSFGP+ED FL ++LA A+ +P IY+AANSGARIG+AEE+
Sbjct: 1670 YPDGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEI 1729
Query: 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLES-GETRWVVDSIVGKED 1719
+ F + W D +P +G+ Y+YLTP+DY R+ + H +E GE+R+ + I+GKE+
Sbjct: 1730 RHMFHVAWVDPEDPYKGYKYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEE 1789
Query: 1720 GLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779
GLG ENL GSG IAG S AY E T++ VT R +GIGAYL RLG R IQ + +ILTG
Sbjct: 1790 GLGAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTG 1849
Query: 1780 FSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGAL 1839
ALNK+LGREVY+S+ QLGG +IM NGV H TV DD EG+ +L WLSY+P + ++
Sbjct: 1850 AGALNKVLGREVYTSNNQLGGIQIMHNNGVTHSTVCDDFEGVFTVLHWLSYMPKSVHSSV 1909
Query: 1840 PIISPLDPPDRPVEYLPENS-CDPRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWART 1896
P+++ DP DR +E++P + DPR + G G+W+ G FD SF E ++ WA+T
Sbjct: 1910 PLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1969
Query: 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAL 1956
VV GRARLGGIPVG+VAVET+TV IPADP LDS +++ QAGQVWFPDSA KT QA+
Sbjct: 1970 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2029
Query: 1957 MDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016
DFNRE LPL + ANWRGFSGG +D+++ +L+ G+ IV+ LR QPV VYIP AELRG
Sbjct: 2030 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRG 2089
Query: 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAK 2076
G+WVV+D IN H+EMYADR ++G+VLEPEG +EIKFR K+L++ M R+D I L +
Sbjct: 2090 GSWVVIDPTINPRHMEMYADRESRGSVLEPEGTVEIKFRKKDLVKTMRRVDPVYIRLAER 2149
Query: 2077 LQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136
L + + T + L+ ++K RE+ L+P Y QVA +FA+LHDT RM KGVI +++DW
Sbjct: 2150 LGTPELSPTER--KELESKLKEREEFLIPIYHQVAVQFADLHDTPGRMQEKGVINDILDW 2207
Query: 2137 DKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLD 2196
SR+FF RLRR + E LVK A LT M+++WF++ E K W +
Sbjct: 2208 KTSRTFFYWRLRRLLLE-DLVKKKIHNANPELTDGQIQAMLRRWFVEVE-GTVKAYVWDN 2265
Query: 2197 DETFFTWKDDSRNYEKKVQELGVQKVL 2223
++ W + ++ +E GV+ V+
Sbjct: 2266 NKDLVEWLE-----KQLTEEDGVRSVI 2287
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|Q9TTS3|ACACA_BOVIN Acetyl-CoA carboxylase 1 OS=Bos taurus GN=ACACA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1598 bits (4138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/2307 (40%), Positives = 1338/2307 (57%), Gaps = 184/2307 (7%)
Query: 7 RSAMAGL-----GRGNGHINGA--VPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
RS+M+GL GR I+ + SPA EF GG K I +LIANNG+A
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPA------EFVTRFGGNKVIEKVLIANNGIA 129
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVK +RSIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYAN
Sbjct: 130 AVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYAN 189
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
V+LI+++A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++
Sbjct: 190 VELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIV 249
Query: 180 AQAANVPTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAM 234
AQ A +PTLPWSGS + + ++ +P ++Y + V ++ + + + VGYP M
Sbjct: 250 AQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVM 309
Query: 235 IKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGN 294
IKAS GGGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN
Sbjct: 310 IKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGN 369
Query: 295 VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354
+L RDCSVQRRHQKIIEE P +A + +EQ A +LA+ V YV A TVEYLYS
Sbjct: 370 AISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYSQ 429
Query: 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVY 414
+ G +YFLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G
Sbjct: 430 D-GSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG-- 486
Query: 415 DAWRKTSVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473
DA P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NV
Sbjct: 487 DA---------PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNV 537
Query: 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDL 533
W YFSV + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I L
Sbjct: 538 WGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKL 597
Query: 534 LHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEK 593
L ++ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+
Sbjct: 598 LETESFQLNRIGTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLER 657
Query: 594 GQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ 653
GQ+ H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+
Sbjct: 658 GQVLTAHTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLS 717
Query: 654 LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADT 713
D +S+ Y +EE R+ I +TC+ + ++DPS L + + KL++Y+V DG H+ A
Sbjct: 718 YDVSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVLRSPSAGKLIQYIVEDGGHVFAGQ 777
Query: 714 PYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFP 773
YAE+EVMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P
Sbjct: 778 CYAEIEVMKMVMTLTAAESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLP 837
Query: 774 ILGPPTAISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPL 825
+ TA+ G K+H+ L+ ++ GY +++ V+ L+ L P LPL
Sbjct: 838 RI-QSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPL 896
Query: 826 LQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK- 884
L+ Q+ M +S R+P +++ ++ + ++ +S FP++ + +L++H + K
Sbjct: 897 LELQDIMTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKS 956
Query: 885 ERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQ 944
ER + ++ LV+ Y G H + +V L +YL VE F + + LR +
Sbjct: 957 EREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREE 1016
Query: 945 YKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPNPA---AYRDKLIRFSALNHTNYSE 1001
K D+ V++ + SH V RKN L+ L++QL P + L + L+ T ++
Sbjct: 1017 NKSDMNTVLNYIFSHAQVTRKNLLVTMLIDQLCGRGPTLTDELLNILTELTQLSKTTNAK 1076
Query: 1002 LALKASQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVS 1057
+AL+A Q+L + L ELR + S LS ++M+ E ++ L+
Sbjct: 1077 VALRARQVLIASHLPSYELRLNQVESIFLSAIDMYGH-----------QFCIENLQKLIL 1125
Query: 1058 APLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL-- 1115
+ ++ D L F HS+ ++ +E YVRR Y Y + Q + ++F+
Sbjct: 1126 SETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLP 1185
Query: 1116 EEHIERKNGPE--------------------------DQTPEQPLVEKHSERKWGAMVII 1149
H R N P D P ++ G MV
Sbjct: 1186 TSHPNRGNIPTLNRMSFSSNLNHYGMTHVASVSDVLLDNAFTPPC------QRMGGMVSF 1239
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIAL-----VGMNNQMSLLQD 1204
++ + F I + Q+ ++ H +L V + + +L
Sbjct: 1240 RTFEDFVRIFDEVM--------GCFCDSPPQSPTFPEAGHTSLYDEDKVPRDEPIHILNV 1291
Query: 1205 SGDEDQAQERINKLAKILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHS----FHW 1258
+ D E + LA + +E Q+ + L G+ ++ ++ + + R + + FH
Sbjct: 1292 AIKTDCDIED-DSLAAMFREFTQQNKATLVEHGIRRLTFLVAQKDFRKQVNYEVDQRFHR 1350
Query: 1259 SPEKFY-------YEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLY----- 1306
KF+ +EE+ + RHLEP L+ LEL++++ +D + + + HLY
Sbjct: 1351 EFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFD-LTAIPCANHKMHLYLGAAK 1409
Query: 1307 TVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366
V + R F+R ++R SD+ T A + + R L+ AM+
Sbjct: 1410 VEVGTEVTDYRFFVRAIIRH------------SDLVTKEA--SFEYLQNEGERLLLEAMD 1455
Query: 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREI 1426
ELE+ +N +V++D ++L + VP V +D + +EE R +
Sbjct: 1456 ELEVAFNNTNVRTDCNHIFL---------NFVP---TVIMDPSK--------IEESVRSM 1495
Query: 1427 HATVGVRMHKLGVCEWEVKLWMAYSGQANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHT 1485
G R+ KL V + E+K+ + + R+ +TN +G+ + +Y+E+ D+
Sbjct: 1496 VMRYGSRLWKLRVLQAELKINIRLTPTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQ 1555
Query: 1486 VVYHSVAVR-GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWAS 1544
+++ + + G LHG+ +N Y + L KR A+ TTY YD P F +L + W S
Sbjct: 1556 IMFQAYGDKQGPLHGMLINTPYVTKDQLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWES 1615
Query: 1545 Q----FPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPE 1600
F P +L TEL DD G LV + R PG N IGMVAW M + +PE
Sbjct: 1616 MSSQAFLPPPPLPSDILTYTELVL-DDQGQ----LVHMNRLPGGNEIGMVAWKMTLKSPE 1670
Query: 1601 FPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
+P GR I+++ ND+T++ GSFGP+ED FL ++LA A+ +P IY+AANSGARIG+AEE+
Sbjct: 1671 YPDGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEI 1730
Query: 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLES-GETRWVVDSIVGKED 1719
+ F + W D +P +G+ Y+YLTP+DY R+ + H +E GE+R+ + I+GKE+
Sbjct: 1731 RHMFHVAWVDPEDPYKGYKYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEE 1790
Query: 1720 GLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG 1779
GLG ENL GSG IAG S AY E T++ VT R +GIGAYL RLG R IQ + +ILTG
Sbjct: 1791 GLGAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTG 1850
Query: 1780 FSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGAL 1839
ALNK+LGREVY+S+ QLGG +IM NGV H TV DD EG+ +L WLSY+P + ++
Sbjct: 1851 AGALNKVLGREVYTSNNQLGGIQIMHNNGVTHSTVCDDFEGVFTVLHWLSYMPKSVYSSV 1910
Query: 1840 PIISPLDPPDRPVEYLPENS-CDPRAAICG--FLDNNGKWIGGIFDKDSFVETLEGWART 1896
P+++ DP DR +E++P + DPR + G G+W+ G FD SF E ++ WA+T
Sbjct: 1911 PLLNSKDPIDRVIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQT 1970
Query: 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAL 1956
VV GRARLGGIPVG+VAVET+TV IPADP LDS +++ QAGQVWFPDSA KT QA+
Sbjct: 1971 VVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKIIQQAGQVWFPDSAFKTYQAI 2030
Query: 1957 MDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016
DFNRE LPL + ANWRGFSGG +D+++ +L+ G+ IV+ LR QPV VYIP AELRG
Sbjct: 2031 KDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGLRECSQPVMVYIPPQAELRG 2090
Query: 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAK 2076
G+WVV+D IN H+EMYADR ++G+VLEPEG +EIKFR K+L++ M R+D I L +
Sbjct: 2091 GSWVVIDPTINPRHMEMYADRESRGSVLEPEGTVEIKFRRKDLVKTMRRVDPVYIHLAER 2150
Query: 2077 LQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136
L ++A + L+ ++K RE+ LLP Y QVA +FA+LHDT RM KGVI +++DW
Sbjct: 2151 L--GTPELSVAERKELESKLKEREEFLLPIYHQVAVQFADLHDTPGRMQEKGVINDILDW 2208
Query: 2137 DKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLD 2196
SR+FF RLRR + E LVK A LT M+++WF++ E K W +
Sbjct: 2209 KTSRTFFYWRLRRLLLE-DLVKKKIHNANPELTDGQIQAMLRRWFVEVE-GTVKAYVWDN 2266
Query: 2197 DETFFTWKDDSRNYEKKVQELGVQKVL 2223
++ W + ++ +E GV+ V+
Sbjct: 2267 NKDLVEWLE-----KQLTEEDGVRSVI 2288
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
| >sp|P11029|ACAC_CHICK Acetyl-CoA carboxylase OS=Gallus gallus GN=ACAC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1597 bits (4136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/2280 (40%), Positives = 1336/2280 (58%), Gaps = 153/2280 (6%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
R +M+GL G V ++ ++ EF GG + I +LIANNG+AAVK +R
Sbjct: 76 RPSMSGLHLVKQGRDRKKVDVQRDFTVASPAEFVTRFGGNRVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 136 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLHKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIP-----PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPW+GS +++ + ++ +P ++Y + V ++ + + + VGYP MIKAS G
Sbjct: 256 PTLPWNGSGLRVDWQENDLQKRILNVPQELYEKGYVKDADDGLRAAEEVGYPVMIKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P ++A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPASIATSVVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL +I +IR YG+ W
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLHRIKDIRVMYGVS------PWGDG 488
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
S+ DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 SI-----DFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
++N+I TGWLD IA +V+AERP L VV GAL+ A S VS+++ LE+GQ+ P
Sbjct: 604 QQNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSFRNSVSNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 664 HTLLNTVDVELIYEGRKYVLKVTRQSPNSYVVIMNSSCVEVDVHRLSDGGLLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS L + + KL++Y+V DG H+ A +AE+E
Sbjct: 724 TTYMKEEVDRYRITIGNKTCVFEKENDPSILRSPSAGKLIQYVVEDGGHVFAGQCFAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G + G +IA+L LDDPS V++AE G+ P + T
Sbjct: 784 VMKMVMTLTAGESGCIHYVKRPGAVLDPGCVIAKLQLDDPSRVQQAELHTGTLPQI-QST 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY ++ V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRIFHYVLDNLVNVMNGYCLPEPYFSSKVKGWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + LR + K D+
Sbjct: 963 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLKVETQFQHGHYDKCVFALREENKSDMN 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIR----FSALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+LI + L+ T +++AL+A
Sbjct: 1023 AVLNYIFSHAQVTKKNLLVTMLIDQLCGRDP-TLTDELINILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMYGH-----------QFCIENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1190
Query: 1121 RKNGPED---------QTPEQPLVEKHSE---RKWGAMVIIKSLQSFPDILSAALRETAH 1168
R + + + L++ ++ G MV ++ + F I +
Sbjct: 1191 RMSFSSNLNHYGMVHVASVSDVLLDNSFTPPCQRMGGMVSFRTFEDFVRIFDEVMSCFCD 1250
Query: 1169 SRNDSISKGSAQTASYGNM--------MHIALVGMNNQMSLLQDSGDEDQAQERINKLAK 1220
S S + A AS + +HI V ++ GD D + LA
Sbjct: 1251 SPPQSPTFPEAGHASLYDEDKAAREEPIHILNVA-------IKTDGDVDD-----DGLAA 1298
Query: 1221 ILKE--QEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPL 1278
+ +E Q S L G+ ++ ++ + P +F + +KF EE+ + RHLEP L
Sbjct: 1299 MFREFTQSKKSVLIEHGIRRLTFLVAQKR-EFPKFFTFR-ARDKF--EEDRIYRHLEPAL 1354
Query: 1279 SIYLELDKLKGYDNIQYTLSRDRQWHLY-----TVVDKPLPIRRMFLRTLVRQPTSNDGF 1333
+ LEL++++ +D + + + HLY V + R F+R ++R
Sbjct: 1355 AFQLELNRMRNFD-LTAIPCANHKMHLYLGAAKVEVGTEVTDYRFFVRAIIRH------- 1406
Query: 1334 MSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILREQK 1393
SD+ T A + + R L+ AM+ELE+ +N +V++D ++L
Sbjct: 1407 -----SDLVTKEA--SFEYLQNEGERLLLEAMDELEVAFNNTNVRTDCNHIFL------- 1452
Query: 1394 INDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAYSGQ 1453
+ VP V +D + +EE R + G R+ KL V + E+K+ + +
Sbjct: 1453 --NFVP---TVIMDPSK--------IEESVRSMVMRYGSRLWKLRVLQAELKINIRLTPT 1499
Query: 1454 ANG-AWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLHGVEVNAQYQSLGV 1511
R+ +TN +G+ + +Y+E+ D+ +++ + + G LHG+ +N Y + +
Sbjct: 1500 GKAIPIRLFLTNESGYYLDISLYKEVTDSRTGQIMFQAYGDKQGPLHGMLINTPYVTKDL 1559
Query: 1512 LDQKRLLARRSNTTYCYDFPLAFETALEQSWASQ----FPNMRPKDKALLKVTELKFADD 1567
L KR A+ T+Y YD P F +L + W S F P +L TEL DD
Sbjct: 1560 LQSKRFQAQSLGTSYVYDIPEMFRQSLIKLWDSMNEHAFLPTPPLPSDILTYTELVL-DD 1618
Query: 1568 SGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDA 1627
G LV + R PG N IGMVAW M + TPE+P GR I+++ ND+T++ GSFGP+ED
Sbjct: 1619 QGQ----LVHMNRLPGGNEIGMVAWKMTLKTPEYPEGRDIIVIGNDITYRIGSFGPQEDV 1674
Query: 1628 FFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPED 1687
FL ++LA +P IY+AANSGARIG+AEE++ F + W D +P +G+ Y+YLTP+D
Sbjct: 1675 LFLRASELARTHGIPRIYVAANSGARIGLAEEIRHMFHVAWEDPDDPYKGYKYLYLTPQD 1734
Query: 1688 YARIGSSVIAHEMKLE-SGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746
Y ++ + H +E +GE+R+ + I+GKEDGLG+ENL GSG IAG S AY+ T+
Sbjct: 1735 YKKVSALNSVHCEHVEDNGESRYKITDIIGKEDGLGIENLRGSGMIAGESSLAYESIITI 1794
Query: 1747 TYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMAT 1806
VT R +GIGAYL RLG R IQ + IILTG ALNK+LGREVY+S+ QLGG +IM
Sbjct: 1795 NLVTCRAIGIGAYLVRLGQRTIQVENSHIILTGCGALNKVLGREVYTSNNQLGGIQIMHN 1854
Query: 1807 NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS-CDPRAA 1865
NGV H TV DD EG+ IL WLSY+P + +PI+ DP DR ++++P + DPR
Sbjct: 1855 NGVTHGTVCDDFEGVYTILLWLSYMPKSVYSPVPILKVKDPIDRTIDFVPTKTPYDPRWM 1914
Query: 1866 ICGFLD--NNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVI 1923
+ G + G+W G FD SF+E ++ WA+TVV GRARLGGIPVG+VAVET+TV I
Sbjct: 1915 LAGRPNPSQKGQWQSGFFDNGSFLEIMQPWAQTVVVGRARLGGIPVGVVAVETRTVELSI 1974
Query: 1924 PADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF 1983
PADP LDS +++ QAGQVWFPDSA KTAQA+ DFNRE LPL + ANWRGFSGG +D++
Sbjct: 1975 PADPANLDSEAKIIQQAGQVWFPDSAFKTAQAINDFNREGLPLMVFANWRGFSGGMKDMY 2034
Query: 1984 EGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043
+ +L+ G+ IV+ LR Y+QPV +YIP AELRGG+W V+D IN H+EMYADR ++G +
Sbjct: 2035 DQVLKFGAYIVDGLREYRQPVLIYIPPQAELRGGSWAVIDPTINPRHMEMYADRESRGGI 2094
Query: 2044 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQL 2103
LEPEG +EIKFR K+L++ M R+D + L +L + A + L+ ++K RE+ L
Sbjct: 2095 LEPEGTVEIKFRRKDLVKTMRRVDPVYMRLAERL--GTPELSAADRKDLESKLKEREEFL 2152
Query: 2104 LPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAA 2163
+P Y QVA +FA+LHDT RM KG I +++DW SR+FF RLRR + E +VK
Sbjct: 2153 IPIYHQVAMQFADLHDTPGRMQEKGAITDILDWKTSRTFFYWRLRRLLLE-DVVKKKIHD 2211
Query: 2164 AGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVL 2223
A LT M+++WF++ E K W ++ W + ++ ++E GV+ V+
Sbjct: 2212 ANPELTDGQIQAMLRRWFVEVE-GTVKAYLWDSNKDLVEWLE-----KQLMEEEGVRSVV 2265
|
Catalyzes the rate-limiting reaction in the biogenesis of long-chain fatty acids. Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2267 | ||||||
| 255545642 | 2259 | Homomeric Acetyl-CoA Carboxylase (Hom-AC | 0.993 | 0.997 | 0.866 | 0.0 | |
| 225459364 | 2257 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.994 | 0.999 | 0.865 | 0.0 | |
| 224066915 | 2276 | predicted protein [Populus trichocarpa] | 0.999 | 0.995 | 0.857 | 0.0 | |
| 157427568 | 2271 | acetyl-CoA carboxylase [Jatropha curcas] | 0.996 | 0.994 | 0.860 | 0.0 | |
| 449445226 | 2323 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.997 | 0.973 | 0.851 | 0.0 | |
| 356508126 | 2260 | PREDICTED: acetyl-CoA carboxylase 1-like | 0.995 | 0.998 | 0.846 | 0.0 | |
| 449479913 | 2323 | PREDICTED: LOW QUALITY PROTEIN: acetyl-C | 0.997 | 0.973 | 0.850 | 0.0 | |
| 224082168 | 2264 | predicted protein [Populus trichocarpa] | 0.992 | 0.993 | 0.848 | 0.0 | |
| 226425253 | 2260 | acetyl-CoA carboxylase 3 [Arachis hypoga | 0.995 | 0.998 | 0.843 | 0.0 | |
| 269852582 | 2260 | homomeric acetyl-CoA carboxylase [Arachi | 0.995 | 0.998 | 0.843 | 0.0 |
| >gi|255545642|ref|XP_002513881.1| Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis] gi|223546967|gb|EEF48464.1| Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 4097 bits (10626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1955/2255 (86%), Positives = 2110/2255 (93%), Gaps = 2/2255 (0%)
Query: 13 LGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAY 72
+ RGNG++NG VP RSPA +SEVDEFC +LGGKKPIHSILIANNGMAAVKFIRS+RTWAY
Sbjct: 5 VARGNGYVNGVVPTRSPATISEVDEFCYALGGKKPIHSILIANNGMAAVKFIRSVRTWAY 64
Query: 73 ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRV 132
ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+T V
Sbjct: 65 ETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEITHV 124
Query: 133 DAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192
DAVWPGWGHASE PELPD L+ KGI+FLGPPA SMAALGDKIGSSLIAQAA+VPTLPWSG
Sbjct: 125 DAVWPGWGHASENPELPDALNAKGIVFLGPPAVSMAALGDKIGSSLIAQAADVPTLPWSG 184
Query: 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252
SHVKIPPESCL+TIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND
Sbjct: 185 SHVKIPPESCLITIPDEMYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 244
Query: 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI 312
DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI
Sbjct: 245 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI 304
Query: 313 IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372
IEEGP+TVAPL TVKKLEQAARRLAKCVNYVGAATVEYLYSM+TGEYYFLELNPRLQVEH
Sbjct: 305 IEEGPVTVAPLVTVKKLEQAARRLAKCVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH 364
Query: 373 PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQA 432
PVTEWIAEINLPAAQVAVGMGIPLW+IPEIRRFYGMEHGG Y+AWRKTSV ATPFDFD+A
Sbjct: 365 PVTEWIAEINLPAAQVAVGMGIPLWKIPEIRRFYGMEHGGGYNAWRKTSV-ATPFDFDEA 423
Query: 433 ESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ 492
ESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ
Sbjct: 424 ESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQ 483
Query: 493 FGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
FGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDY+IDLLHASDY++NKIHTGWLDSR
Sbjct: 484 FGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYSIDLLHASDYKDNKIHTGWLDSR 543
Query: 553 IAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNI 612
IAMRVRAERPPWYLSVVGGALYKASASSAAMVSDY+GYLEKGQIPPKHISLVNSQVSLNI
Sbjct: 544 IAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYVGYLEKGQIPPKHISLVNSQVSLNI 603
Query: 613 EGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRL 672
EGSKY IDMVR GPGSY LRMNESEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEAAGTRL
Sbjct: 604 EGSKYMIDMVRGGPGSYRLRMNESEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAGTRL 663
Query: 673 LIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPAS 732
LIDGRTCLLQNDHDPSKL+AETPCKLLRYLVSDGSHI+ADTPYAEVEVMKMCMPLLSPAS
Sbjct: 664 LIDGRTCLLQNDHDPSKLIAETPCKLLRYLVSDGSHIEADTPYAEVEVMKMCMPLLSPAS 723
Query: 733 GVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAAS 792
GV+QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GSFP+LGPPTA+SGKVHQRCAAS
Sbjct: 724 GVIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPLLGPPTAVSGKVHQRCAAS 783
Query: 793 LNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCK 852
LNAARMILAGY+HN +EVVQNLLNCLDSPELP LQWQEC++VL+TRLPKDL+NELESK K
Sbjct: 784 LNAARMILAGYDHNFDEVVQNLLNCLDSPELPFLQWQECLSVLATRLPKDLRNELESKYK 843
Query: 853 EFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912
EFE +SSSQN+DFPAKLLRGVLEAHL SC +KE G+QERL+EPLMSLVKSYEGGRESHAR
Sbjct: 844 EFEGMSSSQNIDFPAKLLRGVLEAHLSSCPEKEIGAQERLVEPLMSLVKSYEGGRESHAR 903
Query: 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRL 972
+IVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLKVVDIVLSHQGV+ KNKLILRL
Sbjct: 904 IIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQGVRSKNKLILRL 963
Query: 973 MEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMF 1032
MEQLVYPNPAAYRDKLIRFS LNHT+YSELALKASQLLEQTKLSELRS+IARSLSELEMF
Sbjct: 964 MEQLVYPNPAAYRDKLIRFSQLNHTSYSELALKASQLLEQTKLSELRSTIARSLSELEMF 1023
Query: 1033 TEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1092
TEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP
Sbjct: 1024 TEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1083
Query: 1093 YLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVIIKSL 1152
YLVKGSVRMQWHR GLIASWEFLEEHI RKNG EDQ ++P+VEK+SERKWGAMVIIKSL
Sbjct: 1084 YLVKGSVRMQWHRSGLIASWEFLEEHIGRKNGSEDQMSDEPVVEKYSERKWGAMVIIKSL 1143
Query: 1153 QSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQ 1212
Q P I++AALRETAH+ +++I GS Q+A++GNMMHIALVG+NNQMSLLQDSGDEDQAQ
Sbjct: 1144 QFLPAIINAALRETAHNLHEAIPNGSMQSANFGNMMHIALVGINNQMSLLQDSGDEDQAQ 1203
Query: 1213 ERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLR 1272
ERINKLAKILKEQEVGS L +AGVGVISCIIQRDEGRAPMRHSFHWS EK YYEEEPLLR
Sbjct: 1204 ERINKLAKILKEQEVGSCLRTAGVGVISCIIQRDEGRAPMRHSFHWSAEKLYYEEEPLLR 1263
Query: 1273 HLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSNDG 1332
HLEPPLSIYLELDKLKGY NI+YT SRDRQWHLYTVVDKP+PI+RMFLRTL+RQPT+N+G
Sbjct: 1264 HLEPPLSIYLELDKLKGYGNIKYTPSRDRQWHLYTVVDKPVPIKRMFLRTLLRQPTTNEG 1323
Query: 1333 FMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILREQ 1392
F ++ + R Q+ MSFTSR +LRSL+AAMEELELNVHNA+V SDHA MYLCILREQ
Sbjct: 1324 FTAHQGLGVEVPRTQFDMSFTSRSILRSLVAAMEELELNVHNATVSSDHAHMYLCILREQ 1383
Query: 1393 KINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMAYSG 1452
+I+DLVPYPKRVDVDA QEE A+E +LEELAREIHA+ GVRMH+L VCEWEVK W+ SG
Sbjct: 1384 QIDDLVPYPKRVDVDAAQEEAAVERILEELAREIHASAGVRMHRLNVCEWEVKFWITSSG 1443
Query: 1453 QANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVL 1512
QANGAWRVV+TNVTGHTCAV+IYRELED+SKH VVYHS++++G LHGV VNA YQ LGVL
Sbjct: 1444 QANGAWRVVITNVTGHTCAVHIYRELEDSSKHGVVYHSISIQGPLHGVLVNAIYQPLGVL 1503
Query: 1513 DQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDSGTW 1571
D+KRLLARRS+TTYCYDFPLAFETALEQ WASQ P +PKD +LLKVTEL FAD G+W
Sbjct: 1504 DRKRLLARRSSTTYCYDFPLAFETALEQIWASQLPGTEKPKDNSLLKVTELVFADQKGSW 1563
Query: 1572 GTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLA 1631
GTPLV +ER G+N++GMVAWCMEM TPEFPSGRT+LIVANDVTFKAGSFGPREDAFF A
Sbjct: 1564 GTPLVPMERPAGINDVGMVAWCMEMSTPEFPSGRTVLIVANDVTFKAGSFGPREDAFFFA 1623
Query: 1632 VTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARI 1691
VTDLAC KKLPLIYLAANSGARIGVAEEVK+CF + W+DE +P+RGF YVYL+ EDY I
Sbjct: 1624 VTDLACTKKLPLIYLAANSGARIGVAEEVKSCFRVCWSDESSPERGFQYVYLSSEDYNDI 1683
Query: 1692 GSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTG 1751
GSSVIAHE+ L SGETRWV+D+IVGKEDGLGVENL+GSGAIA AYSRAYKETFTLTYVTG
Sbjct: 1684 GSSVIAHELNLPSGETRWVIDAIVGKEDGLGVENLSGSGAIASAYSRAYKETFTLTYVTG 1743
Query: 1752 RTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVH 1811
RTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVH
Sbjct: 1744 RTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVH 1803
Query: 1812 LTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGFLD 1871
LTV+DDLEG+SAILKWLS PP++GG LP++ P+DP +RPVEY PENSCDPRAAI G LD
Sbjct: 1804 LTVADDLEGVSAILKWLSCTPPYVGGTLPVLCPVDPTERPVEYFPENSCDPRAAISGVLD 1863
Query: 1872 NNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1931
NGKW+GGIFDKDSFVE LEGWARTVVTGRA+LGGIPVG++AVETQTVMQVIPADPGQLD
Sbjct: 1864 GNGKWLGGIFDKDSFVEILEGWARTVVTGRAKLGGIPVGVIAVETQTVMQVIPADPGQLD 1923
Query: 1932 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGS 1991
SHERVVPQAGQVWFPDSATKTAQA++DFNREELPLFILANWRGFSGGQRDLFEGILQAGS
Sbjct: 1924 SHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGS 1983
Query: 1992 TIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIE 2051
TIVENLRTYKQPVFVYIPMM ELRGGAWVVVDS+INSDHIEMYADRTAKGNVLEPEGMIE
Sbjct: 1984 TIVENLRTYKQPVFVYIPMMGELRGGAWVVVDSQINSDHIEMYADRTAKGNVLEPEGMIE 2043
Query: 2052 IKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVA 2111
IKFRTKELLECMGRLDQ+LI AKLQEA+N+ T + ES+QQQIK+RE+QLLP YTQ+A
Sbjct: 2044 IKFRTKELLECMGRLDQQLIAWKAKLQEARNSGTYGVFESIQQQIKSRERQLLPVYTQIA 2103
Query: 2112 TKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHK 2171
T+FAELHD+SLRMAAKGVI+EVVDW +SR++F +RL RR+AE ++KT+ AAG L+HK
Sbjct: 2104 TRFAELHDSSLRMAAKGVIREVVDWGRSRTYFYKRLCRRIAEGEMIKTVKDAAGHQLSHK 2163
Query: 2172 SAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGN 2231
SAI++IK WFL+S+IA GK AW DDE FF WKD NYE+K+QEL +QKVLLQLTNIG
Sbjct: 2164 SAIDLIKNWFLESDIASGKADAWEDDEAFFAWKDVPGNYEEKLQELRIQKVLLQLTNIGE 2223
Query: 2232 STSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
S DL+ALPQGLA LL KV+PS R LI E+ K L
Sbjct: 2224 SMLDLKALPQGLAALLEKVEPSSRGLLIDELRKVL 2258
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459364|ref|XP_002285808.1| PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4082 bits (10586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1955/2258 (86%), Positives = 2105/2258 (93%), Gaps = 3/2258 (0%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MAGLGRGNG I+G V +R+P+ S++DEFCR+LGG +PIHSILI+NNGMAAVKFIRS+RT
Sbjct: 1 MAGLGRGNGLIDG-VTLRTPSTSSQIDEFCRALGGTRPIHSILISNNGMAAVKFIRSVRT 59
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFGTEKAI LVAMATPEDMRINAEHIR+ADQFVEVPGGTNNNNYANVQLIVEMAE+
Sbjct: 60 WAYETFGTEKAISLVAMATPEDMRINAEHIRMADQFVEVPGGTNNNNYANVQLIVEMAEI 119
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T VDAVWPGWGHASE PELPD L+ KGI+FLGPPATSM ALGDKIGSSLIAQAA+VPTLP
Sbjct: 120 THVDAVWPGWGHASENPELPDALNAKGIVFLGPPATSMGALGDKIGSSLIAQAADVPTLP 179
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHV+IP ESCLVTIPD+VYR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 180 WSGSHVRIPSESCLVTIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 239
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEV+ALFKQVQGEVPGSPIF MKVASQSRHLEVQLLCDQ+GNVAALHSRDCSVQRRH
Sbjct: 240 HNDDEVKALFKQVQGEVPGSPIFTMKVASQSRHLEVQLLCDQHGNVAALHSRDCSVQRRH 299
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ
Sbjct: 300 QKIIEEGPITVAPHETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 359
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGG YDAWR+TSV+ATPFDF
Sbjct: 360 VEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGYDAWRRTSVVATPFDF 419
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+AES RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 420 DKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 479
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIA MVLGLKEIQIRGEIR+NVDYTIDLLHASDYRENKIHTGWL
Sbjct: 480 DSQFGHVFAFGESRALAIATMVLGLKEIQIRGEIRSNVDYTIDLLHASDYRENKIHTGWL 539
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDY+GYLEKGQIPPKHISLVNSQVS
Sbjct: 540 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYVGYLEKGQIPPKHISLVNSQVS 599
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDMVR GPGSY LRMNESEIE+EIHTLRDGGLLMQLDGNSH++YAEEEAAG
Sbjct: 600 LNIEGSKYTIDMVRGGPGSYRLRMNESEIESEIHTLRDGGLLMQLDGNSHIIYAEEEAAG 659
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLI GRTCLLQNDHDPSKLVAETPCKLLRYL+SD SH+DADTPYAEVEVMKMCMPLLS
Sbjct: 660 TRLLIGGRTCLLQNDHDPSKLVAETPCKLLRYLISDNSHVDADTPYAEVEVMKMCMPLLS 719
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASG++QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GSFPILGPPT ISGKVHQRC
Sbjct: 720 PASGIIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPILGPPTVISGKVHQRC 779
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AAS+NAARMILAGY+HNI+EVVQNLL+CLDSPELP LQWQEC+AVL+TRLPKDL+NELES
Sbjct: 780 AASINAARMILAGYDHNIDEVVQNLLSCLDSPELPFLQWQECLAVLATRLPKDLRNELES 839
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KEFE ISSSQNV+FPAKLLRGVL+AHL SC DKE+G+QERL+EPLMSLVKSYEGGRES
Sbjct: 840 KYKEFEGISSSQNVEFPAKLLRGVLDAHLCSCPDKEKGAQERLVEPLMSLVKSYEGGRES 899
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HAR+IVQSLFEEYLS+EELFSD IQADVIERLRLQYKKDLLK+VDIVLSHQGV+ KNKLI
Sbjct: 900 HARIIVQSLFEEYLSIEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGVRSKNKLI 959
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
LRLMEQLVYPNPAAYRDKLIRFSALNHT+YSELALKASQLLEQTKLSELRSSIARSLSEL
Sbjct: 960 LRLMEQLVYPNPAAYRDKLIRFSALNHTSYSELALKASQLLEQTKLSELRSSIARSLSEL 1019
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTE+GE+MDTP+RKSAI+ERME LVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL
Sbjct: 1020 EMFTEEGENMDTPRRKSAINERMEALVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1079
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIASWEFLEEH+ERKN EDQ ++ L+EKH+E+KWGAMVII
Sbjct: 1080 YQPYLVKGSVRMQWHRSGLIASWEFLEEHLERKNASEDQISDKSLIEKHNEKKWGAMVII 1139
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSLQ P ++SAALRET H +SI GS + S+GNMMHIALVG+NNQMSLLQDSGDED
Sbjct: 1140 KSLQFLPTVISAALRETTHHFEESIPSGSIEQDSHGNMMHIALVGINNQMSLLQDSGDED 1199
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLA+ILKEQEV S L +AGVGVISCIIQRDEGRAPMRHSFHWS EK YYEEEP
Sbjct: 1200 QAQERINKLARILKEQEVSSSLRAAGVGVISCIIQRDEGRAPMRHSFHWSVEKLYYEEEP 1259
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTS 1329
LLRHLEPPLSIYLELDKLKGY+NI+YT SRDRQWHLYTVVDK LPI+RMFLRTLVRQPTS
Sbjct: 1260 LLRHLEPPLSIYLELDKLKGYENIKYTPSRDRQWHLYTVVDKQLPIQRMFLRTLVRQPTS 1319
Query: 1330 NDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCIL 1389
+G Y D+GT + Q TMSFTS+ +LRSLM AMEELEL+ HNA+VKSDH+ MYL IL
Sbjct: 1320 -EGLTLYQGLDVGTTQTQSTMSFTSKSILRSLMTAMEELELHGHNATVKSDHSHMYLYIL 1378
Query: 1390 REQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMA 1449
+EQ+I+DLVPYPKRV + AGQEE +E +LEELA EIHA+VGVRMH+LGVCEWEVKL +A
Sbjct: 1379 QEQQIDDLVPYPKRVVIGAGQEEAGVERILEELAHEIHASVGVRMHRLGVCEWEVKLCIA 1438
Query: 1450 YSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSL 1509
+GQA G+WRVVV NVTGHTC V+IYRELED SKH VVYHS + +G L GV VNA YQ L
Sbjct: 1439 SAGQAYGSWRVVVANVTGHTCTVHIYRELEDASKHRVVYHSKSAQGHLQGVPVNAHYQHL 1498
Query: 1510 GVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFADDS 1568
GVLD+KRLLARRSNTTYCYDFPLAFETAL+Q WASQ + RP DK L KVTEL FAD
Sbjct: 1499 GVLDRKRLLARRSNTTYCYDFPLAFETALQQLWASQSQGINRPNDKVLFKVTELAFADKR 1558
Query: 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAF 1628
G+WGT LV VER+PG N++GMVAW MEM TPEFP+GRTILIVANDVTFKAGSFGPREDAF
Sbjct: 1559 GSWGTHLVPVERTPGENDVGMVAWRMEMSTPEFPNGRTILIVANDVTFKAGSFGPREDAF 1618
Query: 1629 FLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDY 1688
FLAVTDLAC++KLPLIYLAANSGARIGVAEEVKACF+IGW+DE +P+RGF YVYLTPEDY
Sbjct: 1619 FLAVTDLACSEKLPLIYLAANSGARIGVAEEVKACFKIGWSDESSPERGFQYVYLTPEDY 1678
Query: 1689 ARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTY 1748
ARIGSSVIAHE+ +ESGETRWV+D+IVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTY
Sbjct: 1679 ARIGSSVIAHELSMESGETRWVIDTIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTY 1738
Query: 1749 VTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNG 1808
VTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNG
Sbjct: 1739 VTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNG 1798
Query: 1809 VVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICG 1868
VVHLTVSDDLEG+SAILKWLSYVP H+GGALPI+ P DPP+RPVEY PENSCDPRAAICG
Sbjct: 1799 VVHLTVSDDLEGVSAILKWLSYVPSHVGGALPILKPSDPPERPVEYFPENSCDPRAAICG 1858
Query: 1869 FLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPG 1928
+++GKW+GG+FDKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQTVMQVIPADPG
Sbjct: 1859 APNSSGKWLGGLFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQVIPADPG 1918
Query: 1929 QLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ 1988
QLDSHERVVPQAGQVWFPDSATKT+QAL+DFNREELPLFILANWRGFSGGQRDLFEGILQ
Sbjct: 1919 QLDSHERVVPQAGQVWFPDSATKTSQALLDFNREELPLFILANWRGFSGGQRDLFEGILQ 1978
Query: 1989 AGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048
AGSTIVENLRTYKQPVFVYIPMM ELRGGAWVVVDSRINSDHIEMYA+RTAKGNVLEPEG
Sbjct: 1979 AGSTIVENLRTYKQPVFVYIPMMGELRGGAWVVVDSRINSDHIEMYAERTAKGNVLEPEG 2038
Query: 2049 MIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYT 2108
MIEIKFRTKELLECMGRLDQ+LI+L AKLQEAK++R VESLQQQIKAREKQLLP YT
Sbjct: 2039 MIEIKFRTKELLECMGRLDQQLINLKAKLQEAKSSRVHGTVESLQQQIKAREKQLLPVYT 2098
Query: 2109 QVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYL 2168
Q+AT+FAELHDTSLRMAAKGVIKEVVDW SRSFF RRL RRV E SL+K + AAGD +
Sbjct: 2099 QIATRFAELHDTSLRMAAKGVIKEVVDWGNSRSFFYRRLHRRVIEGSLIKVVRDAAGDQM 2158
Query: 2169 THKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTN 2228
+HK A+++IK+WFLDSEIA G + AW DD+ FFTWK+D NYE+K+QEL QKVLL L+
Sbjct: 2159 SHKCAMDLIKKWFLDSEIASGSKDAWADDQAFFTWKNDPANYEEKLQELRAQKVLLHLSK 2218
Query: 2229 IGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
IG+S SDLQ+LPQGLA LL KV+PS R QLIGE+ K L
Sbjct: 2219 IGDSASDLQSLPQGLAALLQKVEPSSRAQLIGELRKVL 2256
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066915|ref|XP_002302277.1| predicted protein [Populus trichocarpa] gi|222844003|gb|EEE81550.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 4073 bits (10562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1950/2275 (85%), Positives = 2099/2275 (92%), Gaps = 9/2275 (0%)
Query: 1 MSEAQRRSAMA-GLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
MSEAQRR + +GRGNG+ING IRSPA +S VD FCRSLGGKKPIHSIL+ANNGMA
Sbjct: 1 MSEAQRRPPITLAVGRGNGYINGIASIRSPATISLVDHFCRSLGGKKPIHSILVANNGMA 60
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVKF+RSIRTWAYETFGT+KAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN
Sbjct: 61 AVKFMRSIRTWAYETFGTDKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 120
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
VQLIVEMAE+T VDAVWPGWGHASE PELPD L+ KGI+FLGPPATSMAALGDKIGSSLI
Sbjct: 121 VQLIVEMAEITHVDAVWPGWGHASENPELPDALNAKGIVFLGPPATSMAALGDKIGSSLI 180
Query: 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239
AQAA+VPTLPWSGSHVK+ P+SCLVTIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASW
Sbjct: 181 AQAADVPTLPWSGSHVKLSPQSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASW 240
Query: 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 299
GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD YGNVAALH
Sbjct: 241 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDHYGNVAALH 300
Query: 300 SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359
SRDCS+QRRHQKIIEEGPITVAP++TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY
Sbjct: 301 SRDCSIQRRHQKIIEEGPITVAPVDTVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 360
Query: 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419
YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI EIRRFYGMEHGG YDAWRK
Sbjct: 361 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIAEIRRFYGMEHGGGYDAWRK 420
Query: 420 TSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
TS++ATPFDFD+AES RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV
Sbjct: 421 TSLVATPFDFDKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 480
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY
Sbjct: 481 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 540
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
R+NKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAA+VSDYIGYLEKGQIPPK
Sbjct: 541 RDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAVVSDYIGYLEKGQIPPK 600
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQ------ 653
HISLVNSQVSLNIEGSKY IDMVR GPGSY LRMN+SE+E EIHTLRDGGLLMQ
Sbjct: 601 HISLVNSQVSLNIEGSKYTIDMVREGPGSYKLRMNKSELEVEIHTLRDGGLLMQASIHFH 660
Query: 654 --LDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDA 711
LDGNSHV+YAEEEAAGTRLLIDGRTCLLQNDHDPSKL+AETPCKLLRYLV DGSHIDA
Sbjct: 661 GLLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLMAETPCKLLRYLVLDGSHIDA 720
Query: 712 DTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGS 771
D PY EVEVMKMCMPLLSPASG++QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GS
Sbjct: 721 DMPYVEVEVMKMCMPLLSPASGLIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGS 780
Query: 772 FPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQEC 831
FP+LGPPTAISGKVHQRCAASLNAARMILAGY+HNI+E +QNLL CLDSPELP LQWQEC
Sbjct: 781 FPVLGPPTAISGKVHQRCAASLNAARMILAGYDHNIDEAMQNLLICLDSPELPFLQWQEC 840
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQER 891
+AVL+ RLPKDL+ ELE+ +EFE +SSS N+DFPAKLL+GVLEAHL SC +KE+G+QER
Sbjct: 841 LAVLANRLPKDLRTELEATYREFEGVSSSLNIDFPAKLLKGVLEAHLSSCPEKEKGAQER 900
Query: 892 LIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLK 951
L+EPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLK
Sbjct: 901 LVEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLK 960
Query: 952 VVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLE 1011
VVDIVLSHQGV+ KNKLIL LMEQLVYPNPAAYRDKLIRFS LNHTNYSELALKASQLLE
Sbjct: 961 VVDIVLSHQGVRSKNKLILCLMEQLVYPNPAAYRDKLIRFSQLNHTNYSELALKASQLLE 1020
Query: 1012 QTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFD 1071
QTKLSELRS+IARSLSELEMFTEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFD
Sbjct: 1021 QTKLSELRSTIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFD 1080
Query: 1072 HSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPE 1131
H DHTLQRRVVETYVRRLYQPYLVKGSVRMQWHR GLIASWEFLEEHIER NG DQT +
Sbjct: 1081 HGDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRSGLIASWEFLEEHIERNNGSGDQTSD 1140
Query: 1132 QPLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIA 1191
+PLVEKH E+KWGAMVIIKSLQ P I+SAALRET H +++IS GS + S+GNMMHIA
Sbjct: 1141 KPLVEKHCEQKWGAMVIIKSLQFLPAIISAALRETVHDPHETISNGSLEPTSFGNMMHIA 1200
Query: 1192 LVGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAP 1251
LVG+NN MSLLQDSGDEDQAQERINKLAKILKEQEVGS LHSAGVGVISCIIQRDEGRAP
Sbjct: 1201 LVGINNPMSLLQDSGDEDQAQERINKLAKILKEQEVGSSLHSAGVGVISCIIQRDEGRAP 1260
Query: 1252 MRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK 1311
MRHSFHWS EK YY EEPLLRHLEPPLSIYLELDKLKGY+NIQYT SRDRQWHLYTVVDK
Sbjct: 1261 MRHSFHWSAEKLYYAEEPLLRHLEPPLSIYLELDKLKGYENIQYTPSRDRQWHLYTVVDK 1320
Query: 1312 PLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELN 1371
P+PIRRMFLRTLVRQ T N+GF +Y M T R W +SFTS+ +LRSL+AAMEELELN
Sbjct: 1321 PVPIRRMFLRTLVRQTTMNEGFTAYQGLGMETARTHWAVSFTSKSILRSLVAAMEELELN 1380
Query: 1372 VHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVG 1431
HN +VKSDHA MYLCILREQ+I+DLVPYPK+V++DA QEE A+EA+LE LAREIHA VG
Sbjct: 1381 AHNTTVKSDHAHMYLCILREQQIDDLVPYPKKVEIDAEQEEVAVEAILEGLAREIHAFVG 1440
Query: 1432 VRMHKLGVCEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSV 1491
VRMH+LGVCEWEVKLWMA SGQANGAWRVVV NVTGHTCAV+IYRELEDTSKH VVYHS+
Sbjct: 1441 VRMHRLGVCEWEVKLWMASSGQANGAWRVVVANVTGHTCAVHIYRELEDTSKHRVVYHSI 1500
Query: 1492 AVRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRP 1551
+V+G LH V VNA YQ LG LD+KRL+AR+S+TTYCYDFPLAFET LEQ WASQFP M
Sbjct: 1501 SVQGPLHLVPVNAHYQPLGALDRKRLMARKSSTTYCYDFPLAFETVLEQIWASQFPGMEK 1560
Query: 1552 KDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVA 1611
+ +LKVTEL FA+++G+WGTPL+ +R GLN+ GMVAWCME+ TPEFP GRTIL+VA
Sbjct: 1561 PEGKVLKVTELIFANENGSWGTPLISTQRPAGLNDFGMVAWCMEILTPEFPLGRTILVVA 1620
Query: 1612 NDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDE 1671
NDVTFKAGSFG REDAFFLAVTDLAC KK+PLIYLAANSGARIGVA+EVK+CF++GW+DE
Sbjct: 1621 NDVTFKAGSFGQREDAFFLAVTDLACNKKIPLIYLAANSGARIGVADEVKSCFKVGWSDE 1680
Query: 1672 LNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGA 1731
L PDRGF YVYL+P D+ARI SSVIAHE+KLE+GETRWV+D+IVGKEDGLGVENL+GSGA
Sbjct: 1681 LFPDRGFQYVYLSPLDHARIRSSVIAHELKLENGETRWVIDAIVGKEDGLGVENLSGSGA 1740
Query: 1732 IAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV 1791
IA AYSRAYKETFTLTYVTGRTVGIGAYL RLGMRCIQRLDQPIILTGFSALNKLLGREV
Sbjct: 1741 IASAYSRAYKETFTLTYVTGRTVGIGAYLTRLGMRCIQRLDQPIILTGFSALNKLLGREV 1800
Query: 1792 YSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP 1851
YSSHMQLGGPKIMATNGVVHLTVSDDLEG+SAI KWLS VP +GGALPI SPLD P+RP
Sbjct: 1801 YSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAIFKWLSCVPHRVGGALPISSPLDSPERP 1860
Query: 1852 VEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGI 1911
V+Y PENSCDPRAAICG D +GKW+GGIFDKDSFVETLEGWARTVVTGRA+LGGIPVGI
Sbjct: 1861 VDYFPENSCDPRAAICGIFDGSGKWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGI 1920
Query: 1912 VAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILAN 1971
VAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA+ DFNREELPLFILAN
Sbjct: 1921 VAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAIFDFNREELPLFILAN 1980
Query: 1972 WRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHI 2031
WRGFSGGQRDLFEGILQAG+TIVENLR YKQPVFVYIPMM ELRGGAW V+DS+INSDHI
Sbjct: 1981 WRGFSGGQRDLFEGILQAGATIVENLRNYKQPVFVYIPMMGELRGGAWAVLDSKINSDHI 2040
Query: 2032 EMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES 2091
EMYADRTAKGNVLEPEGMIEIKFRTK+LLECMGRLDQ+LI+L KLQEA+++ M +S
Sbjct: 2041 EMYADRTAKGNVLEPEGMIEIKFRTKDLLECMGRLDQQLINLKLKLQEARSSAPYGMADS 2100
Query: 2092 LQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRV 2151
LQQQIK REKQLLP YTQ+ATKFAELHD+SLRM AKGVI+EVVDW +SR FFC RLRRR+
Sbjct: 2101 LQQQIKTREKQLLPVYTQIATKFAELHDSSLRMEAKGVIREVVDWARSRHFFCGRLRRRI 2160
Query: 2152 AESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYE 2211
AE L+K + AAG LTHKSA++MIK WFL+S+ ARG+E AW+DDE FF WKDDS NYE
Sbjct: 2161 AECLLIKDVIDAAGQQLTHKSAMDMIKIWFLNSDTARGREDAWVDDEAFFAWKDDSGNYE 2220
Query: 2212 KKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
K+QEL VQKVLLQLT++G S SDL+ALPQGLA LLSKV+PS RE L+ E+ K L
Sbjct: 2221 AKLQELRVQKVLLQLTSVGESMSDLKALPQGLAALLSKVEPSSREHLVDELRKVL 2275
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157427568|gb|ABP02014.1| acetyl-CoA carboxylase [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 4049 bits (10502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1945/2260 (86%), Positives = 2095/2260 (92%), Gaps = 1/2260 (0%)
Query: 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSI 67
+ G NG+ING V +RSPA +SEVDEFC +LGG PIHSILIANNGMAAVKF+RSI
Sbjct: 11 TGTGGCCSCNGYINGVVSMRSPATISEVDEFCHALGGNSPIHSILIANNGMAAVKFMRSI 70
Query: 68 RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127
RTWAYETFG EKAILLVAMATPEDM+INAEHIRIADQFVEVPGGTNNNNYANVQLI+EMA
Sbjct: 71 RTWAYETFGNEKAILLVAMATPEDMKINAEHIRIADQFVEVPGGTNNNNYANVQLILEMA 130
Query: 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPT 187
E TRVDAVWPGWGHASE PELPD LS KGI+FLGPPATSMAALGDKIGSSLIAQAA+VPT
Sbjct: 131 EGTRVDAVWPGWGHASENPELPDALSAKGIVFLGPPATSMAALGDKIGSSLIAQAADVPT 190
Query: 188 LPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR 247
LPWSGSHVKIPPESCL+ IPD+VYR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR
Sbjct: 191 LPWSGSHVKIPPESCLIAIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR 250
Query: 248 KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR 307
KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ+GNVAALHSRDCSVQR
Sbjct: 251 KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQHGNVAALHSRDCSVQR 310
Query: 308 RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
RHQKIIEEGPITVAPLETVKKLEQAARRLAK VNYVGAATVEYLYSMETGEYYFLELNPR
Sbjct: 311 RHQKIIEEGPITVAPLETVKKLEQAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPR 370
Query: 368 LQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPF 427
LQVEHPVTEWIAE+NLPAAQVAVGMGIPLWQIPEIRRFYG+E+GG YDAWRKTSV+ATPF
Sbjct: 371 LQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGVENGGGYDAWRKTSVVATPF 430
Query: 428 DFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE 487
DFD+AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE
Sbjct: 431 DFDKAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE 490
Query: 488 FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTG 547
FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDY+IDLLHASDYR+NKIHTG
Sbjct: 491 FSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYSIDLLHASDYRDNKIHTG 550
Query: 548 WLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQ 607
WLDSRIAMRVRA+RPPWYLSVVGGALYKASASSAAMVSDY+GYLEKGQIPPKHISLVNSQ
Sbjct: 551 WLDSRIAMRVRAKRPPWYLSVVGGALYKASASSAAMVSDYVGYLEKGQIPPKHISLVNSQ 610
Query: 608 VSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEA 667
VSLNIEGSKY I+MVR GPGSY LRMNESEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEA
Sbjct: 611 VSLNIEGSKYVINMVRGGPGSYRLRMNESEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEA 670
Query: 668 AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPL 727
AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLR+LV DGSHI+ADTPYAEVEVMKMCMPL
Sbjct: 671 AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRFLVLDGSHIEADTPYAEVEVMKMCMPL 730
Query: 728 LSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQ 787
LSPASGVLQFKM+EGQAMQAGELIARL+LDDPSAVRK E F+GSFPILGPPTAISGKVHQ
Sbjct: 731 LSPASGVLQFKMSEGQAMQAGELIARLELDDPSAVRKPELFHGSFPILGPPTAISGKVHQ 790
Query: 788 RCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNEL 847
RCAASLNAA MILAGYEHNI+EVVQNLLNCLDSPELP LQWQEC++VL+TRLPKDL+NEL
Sbjct: 791 RCAASLNAACMILAGYEHNIDEVVQNLLNCLDSPELPFLQWQECLSVLATRLPKDLRNEL 850
Query: 848 ESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGR 907
ESK + FE ISSSQNVDFPAKLLRGVLEAHL SC +KE+G+QERL+EPLMSLVKSYEGGR
Sbjct: 851 ESKYRGFEGISSSQNVDFPAKLLRGVLEAHLSSCPEKEKGAQERLVEPLMSLVKSYEGGR 910
Query: 908 ESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNK 967
ESHARVIVQSLF+EYLSVEELF D IQADVIERLRLQYKKDLLKVVDIVLSHQGV+ KNK
Sbjct: 911 ESHARVIVQSLFDEYLSVEELFRDNIQADVIERLRLQYKKDLLKVVDIVLSHQGVRSKNK 970
Query: 968 LILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLS 1027
LILRLMEQLVYPNPAAYRDKLIRFS LNHT+YSELALKASQLLEQTKLSELRS IARSLS
Sbjct: 971 LILRLMEQLVYPNPAAYRDKLIRFSQLNHTSYSELALKASQLLEQTKLSELRSIIARSLS 1030
Query: 1028 ELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVR 1087
ELEMFTEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVR
Sbjct: 1031 ELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVR 1090
Query: 1088 RLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMV 1147
RLYQPYLVK SVRMQWHR GLIASWEFLEEHI RKNG EDQ ++P++EKH +RKWGAMV
Sbjct: 1091 RLYQPYLVKESVRMQWHRSGLIASWEFLEEHIGRKNGYEDQMSDEPVMEKHCDRKWGAMV 1150
Query: 1148 IIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGD 1207
IIKSLQ P I+SAALRET H+ +++I S + +YGNMMHIALVG+NNQMSLLQDSGD
Sbjct: 1151 IIKSLQFLPAIISAALRETTHNLHEAIPNRSTELDNYGNMMHIALVGINNQMSLLQDSGD 1210
Query: 1208 EDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEE 1267
EDQAQERI KLAKILKEQEVGS L +AGV VISCIIQRDEGRAPMRHSFHWS EK YYEE
Sbjct: 1211 EDQAQERIKKLAKILKEQEVGSSLRTAGVEVISCIIQRDEGRAPMRHSFHWSEEKLYYEE 1270
Query: 1268 EPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQP 1327
EPLLRHLEPPLSIYLELDKLK Y NIQYT SRDRQWHLYTVVDKP+ I+RMFLRTLVRQP
Sbjct: 1271 EPLLRHLEPPLSIYLELDKLKSYGNIQYTPSRDRQWHLYTVVDKPVSIQRMFLRTLVRQP 1330
Query: 1328 TSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLC 1387
T+N+ F + M +AQWTMSFTSR +LRSL+AAMEELELN+HNA+VKSDHA MYLC
Sbjct: 1331 TTNEVFTACQGLGMEAPQAQWTMSFTSRSILRSLVAAMEELELNMHNATVKSDHAHMYLC 1390
Query: 1388 ILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLW 1447
ILREQ+I+DLVPYPKRVD++AGQEE AI +LEELAREIHA+VGV+MH+L VCEWEVKLW
Sbjct: 1391 ILREQQIDDLVPYPKRVDIEAGQEEVAIGRILEELAREIHASVGVKMHRLNVCEWEVKLW 1450
Query: 1448 MAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQ 1507
M GQANGAWRVV+TNVTGHTCAV+ YRELED SKH VVYHSV+V+G LHGV VNA YQ
Sbjct: 1451 MTSCGQANGAWRVVITNVTGHTCAVHTYRELEDASKHGVVYHSVSVQGPLHGVLVNAVYQ 1510
Query: 1508 SLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFAD 1566
SLGVLD+KRLLARRSNTTYCYDFPLAFETALEQ WASQF + K L+K TEL F+D
Sbjct: 1511 SLGVLDRKRLLARRSNTTYCYDFPLAFETALEQIWASQFTGTGKLKCNVLVKATELVFSD 1570
Query: 1567 DSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPRED 1626
G+WGTPLV V+R GLN+IGM+AW ME+ TPEFPSGRTILIVANDVTFKAGSFGPRED
Sbjct: 1571 QKGSWGTPLVPVDRPAGLNDIGMIAWTMELSTPEFPSGRTILIVANDVTFKAGSFGPRED 1630
Query: 1627 AFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPE 1686
AFF AVTDLAC KKLPLIYLAANSGARIGVAEEVK+CF++GW+DE +P+ GF YVYL+PE
Sbjct: 1631 AFFYAVTDLACTKKLPLIYLAANSGARIGVAEEVKSCFKVGWSDETSPEGGFQYVYLSPE 1690
Query: 1687 DYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746
DY I SSVIAHE+KL +GETRWV+D+IVGKEDGLGVENL+GSGAIA AYSRAYKETFTL
Sbjct: 1691 DYTHIASSVIAHELKLSNGETRWVIDAIVGKEDGLGVENLSGSGAIASAYSRAYKETFTL 1750
Query: 1747 TYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMAT 1806
TYVTGRTVGIGAYLARLGMRC+QR+DQPIILTGFSALNKLLGREVYSSH+QLGGPK+MAT
Sbjct: 1751 TYVTGRTVGIGAYLARLGMRCMQRVDQPIILTGFSALNKLLGREVYSSHIQLGGPKVMAT 1810
Query: 1807 NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAI 1866
NGVVHLTVSDDLEG+SAIL WLS +PP IGG LPI+ P DP +RPVEY PENSCDPRAAI
Sbjct: 1811 NGVVHLTVSDDLEGVSAILNWLSCIPPCIGGTLPILGPSDPTERPVEYFPENSCDPRAAI 1870
Query: 1867 CGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926
G LD NGKW+GGIFDK+SFVETLEGWARTVVTGRA+LGGIPVG++AVETQTVMQVIPAD
Sbjct: 1871 SGSLDGNGKWLGGIFDKNSFVETLEGWARTVVTGRAKLGGIPVGVIAVETQTVMQVIPAD 1930
Query: 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI 1986
PGQLDSHERVVPQAGQVWFPDSATKTAQA++DFNREELPLFILA WRGFSGGQRDLFEGI
Sbjct: 1931 PGQLDSHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFILAYWRGFSGGQRDLFEGI 1990
Query: 1987 LQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046
LQAGSTIVENLRTY QPVFVYIPMM ELRGGAWVVVDS+INSDHIEMYADRTAKGNVLEP
Sbjct: 1991 LQAGSTIVENLRTYNQPVFVYIPMMGELRGGAWVVVDSQINSDHIEMYADRTAKGNVLEP 2050
Query: 2047 EGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPT 2106
EG+IEIKFRTKELLE MGRLD++LI L AKLQEA+N+ MVE LQQQIK+REKQLLP
Sbjct: 2051 EGIIEIKFRTKELLESMGRLDKQLITLKAKLQEARNSWNFGMVEDLQQQIKSREKQLLPI 2110
Query: 2107 YTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGD 2166
YTQ+AT+FAELHD+SLRMAAKGVI+E+VDWDKSR++F +RLRRR+AE SL+KT+ AAGD
Sbjct: 2111 YTQIATRFAELHDSSLRMAAKGVIREIVDWDKSRAYFYKRLRRRIAEGSLIKTVKDAAGD 2170
Query: 2167 YLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQL 2226
L+HKSA+++IK WFLDS+IARGKE AW +DE FF WKDD YE+K+QEL VQKVL+QL
Sbjct: 2171 QLSHKSAMDLIKNWFLDSDIARGKEDAWGNDEAFFAWKDDQGKYEEKLQELRVQKVLVQL 2230
Query: 2227 TNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
TNIG+S SDL+ALPQGLA LL KV+PS R Q+I E+ K +
Sbjct: 2231 TNIGDSMSDLKALPQGLAALLRKVEPSSRGQIIEELRKVI 2270
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445226|ref|XP_004140374.1| PREDICTED: acetyl-CoA carboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4039 bits (10475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1931/2267 (85%), Positives = 2089/2267 (92%), Gaps = 5/2267 (0%)
Query: 1 MSEAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAA 60
MSEA R+S + GRGNG++NGA+PIR+ A+ EVDEFC+SLGGKKPIHSILIANNGMAA
Sbjct: 60 MSEALRKSNVINFGRGNGYLNGAIPIRNATAVPEVDEFCQSLGGKKPIHSILIANNGMAA 119
Query: 61 VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120
VKFIRS+RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV
Sbjct: 120 VKFIRSVRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 179
Query: 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA 180
QLIVEMAE+T VDAVWPGWGHASE PELPD L+ KGIIFLGPP+ SMAALGDKIGSSLIA
Sbjct: 180 QLIVEMAEITHVDAVWPGWGHASENPELPDALNAKGIIFLGPPSISMAALGDKIGSSLIA 239
Query: 181 QAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
QAA VPTLPWSGSHVKIPP+SCLVTIPDDVYR+ACVYTTEEAIASCQVVGYPAMIKASWG
Sbjct: 240 QAAEVPTLPWSGSHVKIPPDSCLVTIPDDVYREACVYTTEEAIASCQVVGYPAMIKASWG 299
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA+QSRHLEVQLLCDQYGNVAALHS
Sbjct: 300 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAAQSRHLEVQLLCDQYGNVAALHS 359
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY
Sbjct: 360 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 419
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHPVTEWIAEINLPAAQV+VGMGIPLWQIPEIRRFYG+EHGG YDAWRKT
Sbjct: 420 FLELNPRLQVEHPVTEWIAEINLPAAQVSVGMGIPLWQIPEIRRFYGVEHGGGYDAWRKT 479
Query: 421 SVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK 480
SV ATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL+FKSKPNVWAYFSVK
Sbjct: 480 SVAATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELNFKSKPNVWAYFSVK 539
Query: 481 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR 540
SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYT+DLL+A DYR
Sbjct: 540 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTVDLLNALDYR 599
Query: 541 ENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKH 600
ENKIHTGWLDSRIAMRVRAERPPWY+SVVGGAL+KAS SSAAMVSDYIGYLEKGQIPPKH
Sbjct: 600 ENKIHTGWLDSRIAMRVRAERPPWYISVVGGALFKASTSSAAMVSDYIGYLEKGQIPPKH 659
Query: 601 ISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHV 660
ISLV+SQVSLNIEGSKY IDMVR GPGSY LRMN SEIEAEIHTLRDGGLLMQLDGNSHV
Sbjct: 660 ISLVHSQVSLNIEGSKYTIDMVRGGPGSYRLRMNGSEIEAEIHTLRDGGLLMQLDGNSHV 719
Query: 661 VYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720
+YAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSD SHIDAD PYAEVEV
Sbjct: 720 IYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDDSHIDADAPYAEVEV 779
Query: 721 MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTA 780
MKMCMPLLSPASGV+ F+M+EGQAMQAGELIA+LDLDDPSAVRKAEPF+GSFPILGPPTA
Sbjct: 780 MKMCMPLLSPASGVVHFEMSEGQAMQAGELIAKLDLDDPSAVRKAEPFHGSFPILGPPTA 839
Query: 781 ISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLP 840
ISGKVHQRCAA+LNAARMILAGYEHNIEEVVQNLLNCLDSPELP LQWQECM+VL+TRLP
Sbjct: 840 ISGKVHQRCAANLNAARMILAGYEHNIEEVVQNLLNCLDSPELPFLQWQECMSVLATRLP 899
Query: 841 KDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLV 900
K+LK ELE+K +EFE ISSSQNVDFPAKLLR +LEAHL SC +KE+G+QERL+EPL+S+V
Sbjct: 900 KELKFELEAKYREFEGISSSQNVDFPAKLLRSILEAHLSSCPEKEKGAQERLLEPLVSVV 959
Query: 901 KSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQ 960
KSY+GGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLKVVDIVLSHQ
Sbjct: 960 KSYDGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQ 1019
Query: 961 GVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1020
G++ KNKLIL+LMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS
Sbjct: 1020 GIRSKNKLILQLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1079
Query: 1021 SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRR 1080
+IARSLSELEMFTEDGE+MDTPKRKSAIDERME LVS PLAVEDALVGLFDHSDHTLQRR
Sbjct: 1080 NIARSLSELEMFTEDGENMDTPKRKSAIDERMEALVSVPLAVEDALVGLFDHSDHTLQRR 1139
Query: 1081 VVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSE 1140
VVETYVRRLYQPYLVKGSVRMQWHR GLI SWEFLEEHIERKNG +DQ Q VEKHSE
Sbjct: 1140 VVETYVRRLYQPYLVKGSVRMQWHRSGLIGSWEFLEEHIERKNGIDDQEYSQS-VEKHSE 1198
Query: 1141 RKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMS 1200
RKWGAM+I+KSLQ P LSAAL+ET H+ N++ S + ++GNM+HIALVG+NNQMS
Sbjct: 1199 RKWGAMIILKSLQLLPTTLSAALKETTHNGNEATRDKSPEAMNFGNMVHIALVGINNQMS 1258
Query: 1201 LLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSP 1260
LLQDSGDEDQAQERINKLAKILKEQE+GS L SAGV VISCIIQRDEGRAPMRHSFHWS
Sbjct: 1259 LLQDSGDEDQAQERINKLAKILKEQEIGSSLRSAGVAVISCIIQRDEGRAPMRHSFHWSA 1318
Query: 1261 EKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFL 1320
EK +YEEEPLLRHLEPPLSIYLELDKLKGY NI+YT SRDRQWHLYTV DKP I+RMFL
Sbjct: 1319 EKLHYEEEPLLRHLEPPLSIYLELDKLKGYGNIRYTPSRDRQWHLYTVQDKPGLIQRMFL 1378
Query: 1321 RTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSD 1380
RTLVRQP SN+G ++YP D+ + + +SFTSR +LRSLM AMEELELN HN+++K D
Sbjct: 1379 RTLVRQPVSNEGLVAYPGLDVESRKP---LSFTSRSILRSLMTAMEELELNSHNSAIKPD 1435
Query: 1381 HAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVC 1440
HA MYL ILREQ+I DLVPY KR D ++E A+E +L ELAREI + VGVRMHKLGVC
Sbjct: 1436 HAHMYLYILREQQIGDLVPYHKRAIFDTEEKEAAVETILGELAREIQSFVGVRMHKLGVC 1495
Query: 1441 EWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGV 1500
EWEVKLW+ SGQANGAWRVVVTNVTGHTC V+IYRE+EDT++H V+YHSV + LHGV
Sbjct: 1496 EWEVKLWLDSSGQANGAWRVVVTNVTGHTCTVHIYREVEDTNQHRVLYHSVTKQAPLHGV 1555
Query: 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKV 1559
V+AQ+Q LGVLD KRL ARRSNTTYCYDFPLAFETALE+SW SQFPN+ +P++K LL V
Sbjct: 1556 PVSAQHQPLGVLDLKRLSARRSNTTYCYDFPLAFETALEKSWESQFPNIGKPEEKVLLNV 1615
Query: 1560 TELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAG 1619
TEL F+D G+WGTPL+ V+R PG N+IGM+AW MEM TPEFPSGR IL+VANDVTF+AG
Sbjct: 1616 TELSFSDQKGSWGTPLIPVQRQPGQNDIGMIAWLMEMSTPEFPSGRQILVVANDVTFRAG 1675
Query: 1620 SFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFN 1679
SFGPREDAFFLAVTDLAC++KLPLIYLAANSGARIGVA+EVK+CF +GW+DE +P+RGF
Sbjct: 1676 SFGPREDAFFLAVTDLACSRKLPLIYLAANSGARIGVADEVKSCFRVGWSDESSPERGFQ 1735
Query: 1680 YVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1739
YVYLTPEDYARI SSVIAHE+++ +GE RWV+D+IVGKEDGLGVENLTGSGAIAGAYSRA
Sbjct: 1736 YVYLTPEDYARIKSSVIAHEVQMPNGEARWVIDTIVGKEDGLGVENLTGSGAIAGAYSRA 1795
Query: 1740 YKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLG 1799
Y ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLG
Sbjct: 1796 YNETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLG 1855
Query: 1800 GPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS 1859
GPKIMATNGVVHLTVSDDLEGIS+ILKWLSYVP H+GG LPI PLDPPDR VEY PENS
Sbjct: 1856 GPKIMATNGVVHLTVSDDLEGISSILKWLSYVPSHMGGELPISKPLDPPDREVEYSPENS 1915
Query: 1860 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTV 1919
CDPRAAICG LD +GKW+GGIFDKDSF+ETLEGWARTVVTGRA+LGGIPVGI+AVETQTV
Sbjct: 1916 CDPRAAICGALDTSGKWMGGIFDKDSFIETLEGWARTVVTGRAKLGGIPVGIIAVETQTV 1975
Query: 1920 MQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 1979
MQVIPADPGQLDSHERVVPQAGQVWFPDSA+KTAQAL+DFNREELPLFILANWRGFSGGQ
Sbjct: 1976 MQVIPADPGQLDSHERVVPQAGQVWFPDSASKTAQALLDFNREELPLFILANWRGFSGGQ 2035
Query: 1980 RDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTA 2039
RDLFEGILQAGSTIVENLRTYKQPVFVYIPMM ELRGGAWVVVDSRINS HIEMYA+ TA
Sbjct: 2036 RDLFEGILQAGSTIVENLRTYKQPVFVYIPMMGELRGGAWVVVDSRINSQHIEMYAETTA 2095
Query: 2040 KGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR 2099
+GNVLEPEGMIEIKFRT+ELLECMGRLDQ+LI L AKLQEAK NR + ESLQQQIKAR
Sbjct: 2096 RGNVLEPEGMIEIKFRTRELLECMGRLDQQLISLKAKLQEAKGNRIHNLTESLQQQIKAR 2155
Query: 2100 EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKT 2159
EK+LLP Y Q+AT+FAELHDTSLRMA KGVIK+V++W SRSFF +RLRRR++E SL+KT
Sbjct: 2156 EKELLPVYVQIATRFAELHDTSLRMAEKGVIKKVINWSDSRSFFYKRLRRRISEESLIKT 2215
Query: 2160 LTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGV 2219
+ AAG+ L+H +A+++IK+WF +S I E AW+DD TFF+WKDD YE K++EL V
Sbjct: 2216 VREAAGEQLSHGAALDLIKEWFSNSGIETAGEDAWMDDATFFSWKDDPVKYEDKLKELRV 2275
Query: 2220 QKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
QKVLLQLTN+G+S SDLQALPQGLA LLSKVD S R QLI ++ K L
Sbjct: 2276 QKVLLQLTNLGSSRSDLQALPQGLAALLSKVDQSSRVQLIDDLRKVL 2322
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508126|ref|XP_003522811.1| PREDICTED: acetyl-CoA carboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 4034 bits (10462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1912/2259 (84%), Positives = 2090/2259 (92%), Gaps = 2/2259 (0%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MA +G NG++N +P R PAA+SEVD+FC +L G +PIHSILIANNGMAAVKFIRS+R+
Sbjct: 1 MADIGHRNGYVNSVLPNRPPAAISEVDDFCNALCGNRPIHSILIANNGMAAVKFIRSVRS 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFG+EKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI+EMAE+
Sbjct: 61 WAYETFGSEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLILEMAEI 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
T VDAVWPGWGHASE PELPD L KGI+FLGPPA SMAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 THVDAVWPGWGHASENPELPDALKAKGIVFLGPPAISMAALGDKIGSSLIAQAAEVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPPES L+TIPD++YR+ACVYTTEEA+ASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPESSLITIPDEIYREACVYTTEEAVASCQVVGYPAMIKASWGGGGKGIRKV 240
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS+QRRH
Sbjct: 241 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSIQRRH 300
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP+ETVK+LEQAARRLAK VNYVGAATVEYL+SMETGEYYFLELNPRLQ
Sbjct: 301 QKIIEEGPITVAPIETVKQLEQAARRLAKSVNYVGAATVEYLFSMETGEYYFLELNPRLQ 360
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQVA+GMGIPLWQIPEIRRFYG+EHGG YDAWRKTSV+ATPFDF
Sbjct: 361 VEHPVTEWIAEINLPAAQVAIGMGIPLWQIPEIRRFYGVEHGGGYDAWRKTSVLATPFDF 420
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+A+STRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 421 DKAQSTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 480
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLL+ASDYRENKIHTGWL
Sbjct: 481 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRENKIHTGWL 540
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKAS SSAA+VSDY+GYLEKGQIPPKHISLV+SQVS
Sbjct: 541 DSRIAMRVRAERPPWYLSVVGGALYKASTSSAALVSDYVGYLEKGQIPPKHISLVHSQVS 600
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDM+R G GSY LRMN+SEIEAEIHTLRDGGLLMQLDGNSHV+YAEEEAAG
Sbjct: 601 LNIEGSKYTIDMIRGGSGSYRLRMNQSEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAG 660
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLV+D SH+DADTPYAEVEVMKMCMPLLS
Sbjct: 661 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVADDSHVDADTPYAEVEVMKMCMPLLS 720
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASG++ FKM+EGQAMQAGELIARLDLDDPSAVRKAEPF GSFP+LGPPTAISGKVHQ+C
Sbjct: 721 PASGIIHFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFTGSFPVLGPPTAISGKVHQKC 780
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AASLNAARMILAGYEHNI+EVVQ+LLNCLDSPELP LQWQEC+AVL+TRLPKDLKNELES
Sbjct: 781 AASLNAARMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECLAVLATRLPKDLKNELES 840
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KEFE ISSSQ VDFPAKLL+G+LEAHL SC DKE+G+QERL+EPL+SLVKSYEGGRES
Sbjct: 841 KYKEFEGISSSQIVDFPAKLLKGILEAHLSSCPDKEKGAQERLVEPLLSLVKSYEGGRES 900
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HA +IVQSLFEEYLSVEELFSD IQADVIERLRLQY+KDLLK+VDIVLSHQG+K KNKLI
Sbjct: 901 HAHIIVQSLFEEYLSVEELFSDNIQADVIERLRLQYQKDLLKIVDIVLSHQGIKSKNKLI 960
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
L LM++LVYPNPAAYRD+LIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSEL
Sbjct: 961 LLLMDKLVYPNPAAYRDQLIRFSLLNHTNYSELALKASQLLEQTKLSELRSNIARSLSEL 1020
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTEDGE++DTPKRKSAI++RMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETY+RRL
Sbjct: 1021 EMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRL 1080
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIA+WEF +E+IERKNG EDQT + + EKH E+KWG MVII
Sbjct: 1081 YQPYLVKGSVRMQWHRSGLIATWEFYDEYIERKNGVEDQTLNKMVEEKHGEKKWGVMVII 1140
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSLQ P I+SAALRE ++ +++++ GS + +YGNMMHI LVG+NNQMSLLQDSGDED
Sbjct: 1141 KSLQFLPAIISAALREATNNLHEALTSGSVEPVNYGNMMHIGLVGINNQMSLLQDSGDED 1200
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLAKILKE EVGS + +AGV VISCIIQRDEGRAPMRHSFHWS EK YY EEP
Sbjct: 1201 QAQERINKLAKILKEHEVGSTIRAAGVRVISCIIQRDEGRAPMRHSFHWSEEKLYYAEEP 1260
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVD-KPLPIRRMFLRTLVRQPT 1328
LLRHLEPPLSIYLELDKLK Y+NI+YT SRDRQWHLYTVVD KP PI+RMFLRTL+RQPT
Sbjct: 1261 LLRHLEPPLSIYLELDKLKAYENIRYTPSRDRQWHLYTVVDHKPQPIQRMFLRTLLRQPT 1320
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+N+GF SY D T+R Q MSFT+R + RSLMAAMEELELN HNA++KS+HA MYL I
Sbjct: 1321 TNEGFSSYQRLDAETSRTQLAMSFTTRSIFRSLMAAMEELELNAHNANIKSEHAHMYLYI 1380
Query: 1389 LREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWM 1448
+REQ+I+DLVPYPKR+++DAG+EET +EA+LEELAREIH++VGVRMH+LGV WEVKLWM
Sbjct: 1381 IREQQIDDLVPYPKRINIDAGKEETTVEAILEELAREIHSSVGVRMHRLGVVVWEVKLWM 1440
Query: 1449 AYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQS 1508
A GQANGAWRV+V NVTGHTC V+IYRE EDT H VVY SV+++G LHGV VN YQ
Sbjct: 1441 AACGQANGAWRVIVNNVTGHTCTVHIYREKEDTVTHKVVYRSVSIKGPLHGVPVNENYQP 1500
Query: 1509 LGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFADD 1567
LGV+D+KRL AR+++TTYCYDFPLAFETALEQSWA Q P R KDK LLKVTELKFAD
Sbjct: 1501 LGVIDRKRLSARKNSTTYCYDFPLAFETALEQSWAIQQPGFQRAKDKNLLKVTELKFADK 1560
Query: 1568 SGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDA 1627
G+WG PLV VER PGLN++GMVAW MEM TPEFPSGRTIL+VANDVTFKAGSFGPREDA
Sbjct: 1561 EGSWGAPLVPVERYPGLNDVGMVAWFMEMCTPEFPSGRTILVVANDVTFKAGSFGPREDA 1620
Query: 1628 FFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPED 1687
FF AVTDLAC KKLPLIYLAANSGAR+GVAEEVK+CF +GW++E NP+ GF YVYLTPED
Sbjct: 1621 FFRAVTDLACTKKLPLIYLAANSGARLGVAEEVKSCFRVGWSEESNPEHGFQYVYLTPED 1680
Query: 1688 YARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLT 1747
YARIGSSVIAHE+KLESGETRWV+D+IVGKEDGLGVENL+GSGAIAGAYSRAYKETFTLT
Sbjct: 1681 YARIGSSVIAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLT 1740
Query: 1748 YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807
YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN
Sbjct: 1741 YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1800
Query: 1808 GVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAIC 1867
GVVHLTVSDDLEGIS+ILKWLSY+P H+GGALPI+ PLDPP+RPVEY PENSCDPRAAI
Sbjct: 1801 GVVHLTVSDDLEGISSILKWLSYIPSHVGGALPIVKPLDPPERPVEYFPENSCDPRAAIS 1860
Query: 1868 GFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADP 1927
G LD NG+W+GGIFDKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQTVMQ+IPADP
Sbjct: 1861 GTLDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADP 1920
Query: 1928 GQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL 1987
GQLDSHERVVPQAGQVWFPDSATKTAQA++DFNREELPLFILANWRGFSGGQRDLFEGIL
Sbjct: 1921 GQLDSHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFILANWRGFSGGQRDLFEGIL 1980
Query: 1988 QAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047
QAGSTIVENLRTYKQP+FVYIPMM ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE
Sbjct: 1981 QAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2040
Query: 2048 GMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTY 2107
GMIEIKFRT+ELLE MGRLDQ+LI L KLQEAK+NR +A ESLQQQIK+RE+QLLP Y
Sbjct: 2041 GMIEIKFRTRELLESMGRLDQQLITLKVKLQEAKSNRDIAAFESLQQQIKSRERQLLPVY 2100
Query: 2108 TQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDY 2167
TQ+ATKFAELHDTSLRMAAKGV++EV+DW SR+ F +RL RR+ E SL+ ++ AAGD
Sbjct: 2101 TQIATKFAELHDTSLRMAAKGVVREVLDWCNSRAVFYQRLHRRIGEQSLINSVRDAAGDQ 2160
Query: 2168 LTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLT 2227
L+H SA+ ++K+W+L S+IA+G+ AWLDD+ FF WKD+ NYE K++EL QKVLLQLT
Sbjct: 2161 LSHASALNLLKEWYLHSDIAKGRADAWLDDKAFFRWKDNPANYENKLKELRAQKVLLQLT 2220
Query: 2228 NIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
NIG+S DLQALPQGLA LLSK++PS R +L E+ K L
Sbjct: 2221 NIGDSALDLQALPQGLAALLSKLEPSGRVKLTDELRKVL 2259
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449479913|ref|XP_004155744.1| PREDICTED: LOW QUALITY PROTEIN: acetyl-CoA carboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4033 bits (10459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1929/2267 (85%), Positives = 2086/2267 (92%), Gaps = 5/2267 (0%)
Query: 1 MSEAQRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAA 60
MSEA R+S + GRGNG++NGA+PIR+ A+ EVDEFC+SLGGKKPIHSILIANNGMAA
Sbjct: 60 MSEALRKSNVINFGRGNGYLNGAIPIRNATAVPEVDEFCQSLGGKKPIHSILIANNGMAA 119
Query: 61 VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120
VKFIRS+RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV
Sbjct: 120 VKFIRSVRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 179
Query: 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA 180
QLIVEMAE+T VDAVWPGWGHASE PELPD L+ KGIIFLGPP+ SMAALGDKIGSSLIA
Sbjct: 180 QLIVEMAEITHVDAVWPGWGHASENPELPDALNAKGIIFLGPPSISMAALGDKIGSSLIA 239
Query: 181 QAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
QAA VPTLPWSGSHVKIPP+SCLVTIPDDVYR+ACVYTTEEAIASCQVVGYPAMIKASWG
Sbjct: 240 QAAEVPTLPWSGSHVKIPPDSCLVTIPDDVYREACVYTTEEAIASCQVVGYPAMIKASWG 299
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA+QSRHLEVQLLCDQYGNVAALHS
Sbjct: 300 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAAQSRHLEVQLLCDQYGNVAALHS 359
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEEGPITVA LETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY
Sbjct: 360 RDCSVQRRHQKIIEEGPITVAQLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 419
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHPVTEWIAEINLPAAQV+VGMGIPLWQIPEIRRFYG+EHGG YDAWRKT
Sbjct: 420 FLELNPRLQVEHPVTEWIAEINLPAAQVSVGMGIPLWQIPEIRRFYGVEHGGGYDAWRKT 479
Query: 421 SVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK 480
SV ATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL+FKSKPNVWAYFSVK
Sbjct: 480 SVAATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELNFKSKPNVWAYFSVK 539
Query: 481 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR 540
SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYT+DLL+A DYR
Sbjct: 540 SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTVDLLNALDYR 599
Query: 541 ENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKH 600
ENKIHTGWLDSRIAMRVRAERPPWY+SVVGGAL+KAS SSAAMVSDYIGYLEKGQIPPKH
Sbjct: 600 ENKIHTGWLDSRIAMRVRAERPPWYISVVGGALFKASTSSAAMVSDYIGYLEKGQIPPKH 659
Query: 601 ISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHV 660
ISLV+SQVSLNIEGSKY IDMVR GPGSY LRMN SEIEAEIHTLRDGGLLMQLDGNSHV
Sbjct: 660 ISLVHSQVSLNIEGSKYTIDMVRGGPGSYRLRMNGSEIEAEIHTLRDGGLLMQLDGNSHV 719
Query: 661 VYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720
+YAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSD SHIDAD PYAEVEV
Sbjct: 720 IYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDDSHIDADAPYAEVEV 779
Query: 721 MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTA 780
MKMCMPLLSPASGV+ F+M+EGQAMQAGELIA+LDLDDPSAVRKAEPF+GSFPILGPPTA
Sbjct: 780 MKMCMPLLSPASGVVHFEMSEGQAMQAGELIAKLDLDDPSAVRKAEPFHGSFPILGPPTA 839
Query: 781 ISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLP 840
ISGKVHQRCAA+LNAARMILAGYEHNIEEVVQNLLNCLDSPELP LQWQECM+VL+TRLP
Sbjct: 840 ISGKVHQRCAANLNAARMILAGYEHNIEEVVQNLLNCLDSPELPFLQWQECMSVLATRLP 899
Query: 841 KDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLV 900
K+LK ELE+K +EFE ISSSQNVDFPAKLLR +LEAHL SC +KE+G+QERL+EPL+S+V
Sbjct: 900 KELKFELEAKYREFEGISSSQNVDFPAKLLRSILEAHLSSCPEKEKGAQERLLEPLVSVV 959
Query: 901 KSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQ 960
KSY+GGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLLKVVDIVLSHQ
Sbjct: 960 KSYDGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQ 1019
Query: 961 GVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1020
G++ KNKLIL+LMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS
Sbjct: 1020 GIRSKNKLILQLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS 1079
Query: 1021 SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRR 1080
+IARSLSELEMFTEDGE+MDTPKRKSAIDERME LVS PLAVEDALVGLFDHSDHTLQRR
Sbjct: 1080 NIARSLSELEMFTEDGENMDTPKRKSAIDERMEALVSVPLAVEDALVGLFDHSDHTLQRR 1139
Query: 1081 VVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSE 1140
VVETYVRRLYQPYLVKGSVRMQWHR GLI SWEFLEEHIERKNG +DQ Q VEKHSE
Sbjct: 1140 VVETYVRRLYQPYLVKGSVRMQWHRSGLIGSWEFLEEHIERKNGIDDQKYSQS-VEKHSE 1198
Query: 1141 RKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMS 1200
RKWGAM+I+KSLQ P LSAAL+ET H+ N++ S + ++GNM+HIALVG+NNQMS
Sbjct: 1199 RKWGAMIILKSLQLLPTTLSAALKETTHNGNEATRDKSPEAMNFGNMVHIALVGINNQMS 1258
Query: 1201 LLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSP 1260
LLQDSGDEDQAQERINKLAKILKEQE+GS L SAGV VISCIIQRDEGRAPMRHSFHWS
Sbjct: 1259 LLQDSGDEDQAQERINKLAKILKEQEIGSSLRSAGVAVISCIIQRDEGRAPMRHSFHWSA 1318
Query: 1261 EKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFL 1320
EK +YEEEPLLRHLEPPLSIYLELDKLKGY NI+YT SRDRQWHLYTV DKP I+RMFL
Sbjct: 1319 EKLHYEEEPLLRHLEPPLSIYLELDKLKGYGNIRYTPSRDRQWHLYTVQDKPGLIQRMFL 1378
Query: 1321 RTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSD 1380
RTLVRQP SN+G ++YP D+ + + +SFTSR +LRSLM AMEELELN HN+++K D
Sbjct: 1379 RTLVRQPVSNEGLVAYPGLDVESRKP---LSFTSRSILRSLMTAMEELELNSHNSAIKPD 1435
Query: 1381 HAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVC 1440
HA MYL ILREQ+I DLVPY KR D ++E A+E +L ELAREI + VGVRMHKLGVC
Sbjct: 1436 HAHMYLYILREQQIGDLVPYHKRAIFDTEEKEAAVETILGELAREIQSFVGVRMHKLGVC 1495
Query: 1441 EWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGV 1500
EWEVKLW+ SGQANGAWRVVVTNVTGHTC V+IYRE+EDT++H V+YHSV + LHGV
Sbjct: 1496 EWEVKLWLDSSGQANGAWRVVVTNVTGHTCTVHIYREVEDTNQHRVLYHSVTKQAPLHGV 1555
Query: 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKV 1559
V+AQ+Q LGVLD KRL ARRSNTTYCYDFPLAFETALE+SW SQFPN+ +P++K LL V
Sbjct: 1556 PVSAQHQPLGVLDLKRLSARRSNTTYCYDFPLAFETALEKSWESQFPNIGKPEEKVLLNV 1615
Query: 1560 TELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAG 1619
TEL F+D G+WGTPL+ V+R PG N+IGM+AW MEM TPEFPSGR IL+VANDVTF+AG
Sbjct: 1616 TELSFSDQKGSWGTPLIPVQRQPGQNDIGMIAWLMEMSTPEFPSGRQILVVANDVTFRAG 1675
Query: 1620 SFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFN 1679
SFGPREDAFFLAVTDLAC++KLPLIYLAANSGARIGVA+EVK+CF +GW+DE +P+RGF
Sbjct: 1676 SFGPREDAFFLAVTDLACSRKLPLIYLAANSGARIGVADEVKSCFRVGWSDESSPERGFQ 1735
Query: 1680 YVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1739
YVYLTPEDYARI SSVIAHE+++ +GE RWV+D+IVGKEDGLGVENLTGSGAIAGAYSRA
Sbjct: 1736 YVYLTPEDYARIKSSVIAHEVQMPNGEARWVIDTIVGKEDGLGVENLTGSGAIAGAYSRA 1795
Query: 1740 YKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLG 1799
Y ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLG
Sbjct: 1796 YNETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLG 1855
Query: 1800 GPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENS 1859
GPKIMATNGVVHLTVSDDLEGIS+ILKWLSYVP H+GG LPI PLDPPDR VEY PENS
Sbjct: 1856 GPKIMATNGVVHLTVSDDLEGISSILKWLSYVPSHMGGELPISKPLDPPDREVEYSPENS 1915
Query: 1860 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTV 1919
CDPRAAICG LD +GKW+GGIFDKDSF+ETLEGWARTVVTGRA+LGGIPVGI+AVETQTV
Sbjct: 1916 CDPRAAICGALDTSGKWMGGIFDKDSFIETLEGWARTVVTGRAKLGGIPVGIIAVETQTV 1975
Query: 1920 MQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 1979
MQVIPADPGQLDSHERVVPQAGQVWFPDSA+KTAQAL+DFNREELPLFILANWRGFSGGQ
Sbjct: 1976 MQVIPADPGQLDSHERVVPQAGQVWFPDSASKTAQALLDFNREELPLFILANWRGFSGGQ 2035
Query: 1980 RDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTA 2039
RDLFEGILQAGSTIVENLRTYKQP FVYIPMM ELRGGAWVVVDSRINS HIEMYA+ TA
Sbjct: 2036 RDLFEGILQAGSTIVENLRTYKQPXFVYIPMMGELRGGAWVVVDSRINSQHIEMYAETTA 2095
Query: 2040 KGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR 2099
+GNVLEPEGMIEIKFRT+ELLECMGRLDQ+LI L AKLQEAK NR + ESLQQQIKAR
Sbjct: 2096 RGNVLEPEGMIEIKFRTRELLECMGRLDQQLISLKAKLQEAKGNRIHNLTESLQQQIKAR 2155
Query: 2100 EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKT 2159
EK+LLP Y Q+AT+FAELHDTSLRMA KGVIK V++W SRSFF +RLRRR++E SL+KT
Sbjct: 2156 EKELLPVYVQIATRFAELHDTSLRMAEKGVIKXVINWSDSRSFFYKRLRRRISEESLIKT 2215
Query: 2160 LTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGV 2219
+ AAG+ L+H +A+++IK+WF +S I E AW+DD TFF+WKDD YE K++EL V
Sbjct: 2216 VREAAGEQLSHGAALDLIKEWFSNSGIETAGEDAWMDDATFFSWKDDPVKYEDKLKELRV 2275
Query: 2220 QKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
QKVLLQLTN+G+S SDLQALPQGLA LLSKVD S R QLI ++ K L
Sbjct: 2276 QKVLLQLTNLGSSRSDLQALPQGLAALLSKVDQSSRVQLIDDLRKVL 2322
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082168|ref|XP_002306591.1| predicted protein [Populus trichocarpa] gi|222856040|gb|EEE93587.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 4027 bits (10443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1933/2279 (84%), Positives = 2080/2279 (91%), Gaps = 29/2279 (1%)
Query: 1 MSEAQRRSAMA-GLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMA 59
MSE+ RR + G+GRGNG+ING IRSPA +S VD+FC +LGGKKPIHSILIANNGMA
Sbjct: 1 MSESLRRPPITLGVGRGNGYINGVASIRSPATISLVDQFCHALGGKKPIHSILIANNGMA 60
Query: 60 AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 119
AVKFIRSIRTWAYETFGT+KA+LLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN
Sbjct: 61 AVKFIRSIRTWAYETFGTDKALLLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYAN 120
Query: 120 VQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLI 179
VQLIVEMAE+T VDAVWPGWGHASE PELPD L KGI+FLGPP+TSMAALGDKIGSSLI
Sbjct: 121 VQLIVEMAEITHVDAVWPGWGHASENPELPDALDAKGIVFLGPPSTSMAALGDKIGSSLI 180
Query: 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239
AQAA+VPTLPWSGSHVKI ESCLV IPD++YR+ACVYTTEEAIASCQVVGYPAMIKASW
Sbjct: 181 AQAADVPTLPWSGSHVKISSESCLVIIPDEIYREACVYTTEEAIASCQVVGYPAMIKASW 240
Query: 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 299
GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH
Sbjct: 241 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 300
Query: 300 SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359
SRDCS+QRRHQKIIEEGPITVAP ETVKKLEQAARRLAKCVNYVGAATVEYLYSM+TGEY
Sbjct: 301 SRDCSIQRRHQKIIEEGPITVAPPETVKKLEQAARRLAKCVNYVGAATVEYLYSMDTGEY 360
Query: 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419
YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI EIRRFYGME+GG YDAWRK
Sbjct: 361 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQISEIRRFYGMEYGGGYDAWRK 420
Query: 420 TSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
TS++ATPFDFD+AES RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV
Sbjct: 421 TSLVATPFDFDKAESIRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 480
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTI+LLHASDY
Sbjct: 481 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTINLLHASDY 540
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
R+NKIHTGWLDSRIAMRVRAER PWYLSVVGG+LYKA ASSAA+VSDYIGYLEKGQIPPK
Sbjct: 541 RDNKIHTGWLDSRIAMRVRAERLPWYLSVVGGSLYKACASSAALVSDYIGYLEKGQIPPK 600
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
HISLVNSQVSLNIEGSKY IDMVR GPGSY LRMNES+IE EIHTLRDG
Sbjct: 601 HISLVNSQVSLNIEGSKYTIDMVREGPGSYRLRMNESQIEVEIHTLRDG----------- 649
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
EEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSH+DAD PYAEVE
Sbjct: 650 ----EEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHVDADMPYAEVE 705
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKMCMPLLSPASGV+QFKM+EGQAMQAGELIARLDLDDPSAVRKAEPF+GSFP+L PPT
Sbjct: 706 VMKMCMPLLSPASGVIQFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFHGSFPVLAPPT 765
Query: 780 AISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRL 839
AISGKVHQRCAASLNAARMILAGY+HNI+EVVQNLL CLDSPELP LQWQEC+AVL+TRL
Sbjct: 766 AISGKVHQRCAASLNAARMILAGYDHNIDEVVQNLLVCLDSPELPFLQWQECLAVLATRL 825
Query: 840 PKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSL 899
PKDL+ LE+K +EFE ISSS N+DFPAKLL+GVLE HL SC +KE+G+ ERL+EPLMSL
Sbjct: 826 PKDLRTALEAKFREFEGISSSLNIDFPAKLLKGVLEVHLSSCPEKEKGAHERLVEPLMSL 885
Query: 900 VKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSH 959
VKSYEGGRESHARVIVQSLFEEYLSVEELFSD IQADVIERLRLQYKKDLL+VVDIVLSH
Sbjct: 886 VKSYEGGRESHARVIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLRVVDIVLSH 945
Query: 960 QGVKRKNKLILRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELR 1019
QGV+ KNKLILRLMEQLVYP+PAAYRDKLIRFS LNHTNYSELALKASQLLE TKLSELR
Sbjct: 946 QGVRSKNKLILRLMEQLVYPSPAAYRDKLIRFSQLNHTNYSELALKASQLLEHTKLSELR 1005
Query: 1020 SSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQR 1079
S+IARSLSELEMFTEDGE+MDTPKRKSAI+ERMEDLVSAPLAVEDALVGLFDHSDHTLQR
Sbjct: 1006 STIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQR 1065
Query: 1080 RVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHS 1139
RVVETYVRRLYQPYLVKGSVRMQWHR GLIASWEFLEEHIERKNG EDQ P++PLVEKH
Sbjct: 1066 RVVETYVRRLYQPYLVKGSVRMQWHRSGLIASWEFLEEHIERKNGFEDQMPDKPLVEKHR 1125
Query: 1140 ERKWGAMVIIKSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQM 1199
E+KWGAMVIIKSLQ P I+SAAL ET H + + GS + +GNMMHIALVG+NN M
Sbjct: 1126 EQKWGAMVIIKSLQFLPAIISAALLETTHDPREVVLNGSVEPTGFGNMMHIALVGINNPM 1185
Query: 1200 SLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWS 1259
SLLQDSGDEDQAQERI KLAKILKEQEV S LHSAGV VISCIIQRDEGRAPMRHSFHWS
Sbjct: 1186 SLLQDSGDEDQAQERIKKLAKILKEQEVSSSLHSAGVRVISCIIQRDEGRAPMRHSFHWS 1245
Query: 1260 PEKFYYEEEPLLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMF 1319
EK YY EEPLLRHLEPPLSIYLELDKLKGY++I YTLSRDRQWHLYTVVDKP PIRRMF
Sbjct: 1246 VEKLYYAEEPLLRHLEPPLSIYLELDKLKGYEDIHYTLSRDRQWHLYTVVDKPGPIRRMF 1305
Query: 1320 LRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKS 1379
LRTLVRQPT N+GF +Y + T QWT+S TSR +LRSL+ A+EELELNVHNA+VK
Sbjct: 1306 LRTLVRQPTMNEGFTAYQGLGIETTGTQWTVSLTSRSILRSLVTALEELELNVHNATVKP 1365
Query: 1380 DHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGV 1439
DHA MYLCILREQ+I+DLVPYPK++D+DA QEE A+EA+LE LAREIHA VGVRMH+LG
Sbjct: 1366 DHAHMYLCILREQQIDDLVPYPKKLDIDAEQEEVAVEAILEGLAREIHAAVGVRMHRLGA 1425
Query: 1440 CEWEVKLWMAYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHG 1499
CEWEVKLWMA SGQANGAWR+VVTNVTGHTCAV+IYRELE TSK VVYHS++V G LH
Sbjct: 1426 CEWEVKLWMASSGQANGAWRIVVTNVTGHTCAVHIYRELEHTSKQKVVYHSISVHGPLHL 1485
Query: 1500 VEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLK 1558
V VNA YQ LG LD+KRLLARRS+TTYCYDFPLAFET LEQ WASQF M +PKDK ++K
Sbjct: 1486 VPVNAHYQPLGSLDRKRLLARRSSTTYCYDFPLAFETVLEQIWASQFSGMKKPKDK-VIK 1544
Query: 1559 VTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKA 1618
VTEL FAD+ G+WGTPLV +ER GLN+ GMVAWCME+ TPEFP GRTIL+VANDVTFKA
Sbjct: 1545 VTELVFADEKGSWGTPLVSLERPAGLNDFGMVAWCMEILTPEFPLGRTILVVANDVTFKA 1604
Query: 1619 GSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGF 1678
GSFG REDAFFLAVTDLAC KK+PLIYLAANSGARIG A+EVK+CF++GW+DE+ PDRGF
Sbjct: 1605 GSFGQREDAFFLAVTDLACNKKIPLIYLAANSGARIGAADEVKSCFKVGWSDEVFPDRGF 1664
Query: 1679 NYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSR 1738
YVYL+PED+ARIGSSVIAHE+KLE+GETRWV+++IVGKEDGLGVENL+GSGAIA AYSR
Sbjct: 1665 QYVYLSPEDHARIGSSVIAHELKLENGETRWVIEAIVGKEDGLGVENLSGSGAIASAYSR 1724
Query: 1739 AYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQL 1798
AY ETFTLTYVTGRTVGIGAYL RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQL
Sbjct: 1725 AYNETFTLTYVTGRTVGIGAYLTRLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQL 1784
Query: 1799 GGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPEN 1858
GGPKIMATNGVVHLTVSDDLEG+SAILKWLS +PP +GGALPI+SP D P+RPVEY PEN
Sbjct: 1785 GGPKIMATNGVVHLTVSDDLEGVSAILKWLSCIPPCVGGALPILSPSDSPERPVEYFPEN 1844
Query: 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQT 1918
SCDPRAAICG D NGKW+GGIFDKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQT
Sbjct: 1845 SCDPRAAICGIFDGNGKWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQT 1904
Query: 1919 VMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGG 1978
VM+VIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA+ DFNREELPLFILANWRGFSGG
Sbjct: 1905 VMKVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAIFDFNREELPLFILANWRGFSGG 1964
Query: 1979 QRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT 2038
QRDLFEGILQAG+TIVENLRTYKQPVFVYIPMM ELRGGAW V+DS+INSDHIEMYADRT
Sbjct: 1965 QRDLFEGILQAGATIVENLRTYKQPVFVYIPMMGELRGGAWAVLDSKINSDHIEMYADRT 2024
Query: 2039 AKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKA 2098
AKGNVLEPEGMIEIKFRTK+LLECMGRLDQ+LI+L AKLQE +++ MV+SLQQQIK
Sbjct: 2025 AKGNVLEPEGMIEIKFRTKDLLECMGRLDQQLINLKAKLQETRSSAPYGMVDSLQQQIKT 2084
Query: 2099 REKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVK 2158
REKQLLP YTQVATKFAELHD+SLRM AKGVI+EVVDW +SR FFCRRL RR+AE SL+K
Sbjct: 2085 REKQLLPVYTQVATKFAELHDSSLRMEAKGVIREVVDWARSRLFFCRRLCRRIAECSLIK 2144
Query: 2159 TLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELG 2218
+ AAG+ L HKSA++MIK WFL+S+IA+G+E AW+DDE FF WKDDS NYE K+QEL
Sbjct: 2145 DVIDAAGEQLLHKSAMDMIKTWFLNSDIAKGREDAWMDDEAFFAWKDDSGNYEAKLQELR 2204
Query: 2219 VQKVLLQLTNIGNSTSDLQALPQGLATLLSK-----------VDPSCREQLIGEISKAL 2266
KVLLQLTNIG S SDL+ALPQGLA LLSK V+PS RE+L+ E+ K L
Sbjct: 2205 AHKVLLQLTNIGESQSDLKALPQGLAALLSKSRGDALLYLMQVEPSSRERLVDELRKVL 2263
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226425253|gb|ACO53626.1| acetyl-CoA carboxylase 3 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 4016 bits (10415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1906/2259 (84%), Positives = 2087/2259 (92%), Gaps = 2/2259 (0%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MAG+GRGNG+ NG VP R PA +SEVDE+C +LGG +PIHSILIANNGMAAVKFIRS+R+
Sbjct: 1 MAGVGRGNGYTNGVVPNRHPATISEVDEYCNALGGTRPIHSILIANNGMAAVKFIRSVRS 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+
Sbjct: 61 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEI 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
TRVDAVWPGWGHASE PELPD L KGI+FLGPPA SMAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 TRVDAVWPGWGHASENPELPDALKAKGIVFLGPPAVSMAALGDKIGSSLIAQAAEVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPP+SCLVTIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 240
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH
Sbjct: 241 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 300
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP +TVK+LEQAARRLAK VNYVGAATVEYL+SMETGEYYFLELNPRLQ
Sbjct: 301 QKIIEEGPITVAPPQTVKQLEQAARRLAKSVNYVGAATVEYLFSMETGEYYFLELNPRLQ 360
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQVA+GMGIPLWQ+PEIRRFYG+EHGG DAWRKTS +ATPFDF
Sbjct: 361 VEHPVTEWIAEINLPAAQVAIGMGIPLWQLPEIRRFYGVEHGGGNDAWRKTSALATPFDF 420
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+A+ST+PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 421 DKAQSTKPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 480
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLL+ASDYR+NKIHTGWL
Sbjct: 481 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRDNKIHTGWL 540
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKASASSAA+VSDY+GYLEKGQIPPKHISLV+SQVS
Sbjct: 541 DSRIAMRVRAERPPWYLSVVGGALYKASASSAALVSDYVGYLEKGQIPPKHISLVHSQVS 600
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDMVR G GSY LRMN+SE+EAEIHTLRDGGLLMQLDGNSHV+YAE+EAAG
Sbjct: 601 LNIEGSKYTIDMVRGGSGSYRLRMNQSEVEAEIHTLRDGGLLMQLDGNSHVIYAEKEAAG 660
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLIDGRTCLLQNDHDPSKLVAETPC+L+RYLV D SHIDADTPYAEVEVMKMCMPLLS
Sbjct: 661 TRLLIDGRTCLLQNDHDPSKLVAETPCRLMRYLVVDDSHIDADTPYAEVEVMKMCMPLLS 720
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASGV+ FKM+EGQ MQAGELIARLDLDDPSAVRKAEPF G FP+LGPPTA S KVHQ+C
Sbjct: 721 PASGVIHFKMSEGQPMQAGELIARLDLDDPSAVRKAEPFNGKFPVLGPPTATSDKVHQKC 780
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AASL+AA+MILAGYEHNI+EVVQ+LLNCLDSPELP LQWQEC AVL+ RLPKDLKNELES
Sbjct: 781 AASLSAAQMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECFAVLANRLPKDLKNELES 840
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KE+ERISS Q VDFPAKLL+G+LEAHL SC +KE+G+QERLIEPL+SLVKSYEGGRES
Sbjct: 841 KYKEYERISSFQVVDFPAKLLKGILEAHLSSCPNKEKGAQERLIEPLLSLVKSYEGGRES 900
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HAR IVQSLFEEYL VEELFSD IQADVIERLRLQYKKDLLK+VDIVLSHQG+K KNKLI
Sbjct: 901 HARKIVQSLFEEYLFVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGIKSKNKLI 960
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
LRLM++LVYPNPAAYRD+LIRFS LNHTNYS+LALKA QLLEQTKLSELRS+IARSLSEL
Sbjct: 961 LRLMDKLVYPNPAAYRDQLIRFSQLNHTNYSQLALKAGQLLEQTKLSELRSNIARSLSEL 1020
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTEDGE++DTPKRKSAI++RMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETY+RRL
Sbjct: 1021 EMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRL 1080
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIASWEFLEE+IERK+G EDQ ++ LVEKH+E+KWG MV+I
Sbjct: 1081 YQPYLVKGSVRMQWHRSGLIASWEFLEEYIERKSGVEDQMSDKTLVEKHTEKKWGVMVVI 1140
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSL P I++AAL+E ++ ++++S + + +GNMMH+ALVG+NNQMSLLQDSGDED
Sbjct: 1141 KSLHFLPAIITAALKEATNNLHEAVSSAAGEPVKHGNMMHVALVGINNQMSLLQDSGDED 1200
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLAKILKE+EVGS + GVGVISCIIQRDEGR PMRHSFHWS EK YY+EEP
Sbjct: 1201 QAQERINKLAKILKEEEVGSTIRGTGVGVISCIIQRDEGRTPMRHSFHWSAEKLYYQEEP 1260
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVD-KPLPIRRMFLRTLVRQPT 1328
LLRHLEPPLSIYLELDKLKGY+NI+YT SRDRQWHLYTV+D KP P++RMFLRTL+RQPT
Sbjct: 1261 LLRHLEPPLSIYLELDKLKGYENIRYTPSRDRQWHLYTVMDQKPQPVQRMFLRTLLRQPT 1320
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+N+GF SY +D T + MSFTSR + RSLMAAMEELELN HNA+++ +HA MYL I
Sbjct: 1321 TNEGFSSYQRTDAETPSTELAMSFTSRSIFRSLMAAMEELELNSHNATIRPEHAHMYLYI 1380
Query: 1389 LREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWM 1448
+REQ+INDLVPYPKRVD+DAGQEET +EA LEELA EIH++VGVRMH+LGV WEVKLWM
Sbjct: 1381 IREQEINDLVPYPKRVDIDAGQEETTVEATLEELAHEIHSSVGVRMHRLGVVVWEVKLWM 1440
Query: 1449 AYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQS 1508
A QANGAWR+VV NVTGHTC V+IYRE+EDT+ H VVY S+ V+G LHGV VN YQ
Sbjct: 1441 AACAQANGAWRIVVNNVTGHTCTVHIYREMEDTNTHRVVYSSITVKGPLHGVPVNETYQP 1500
Query: 1509 LGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFADD 1567
LGV+D+KRL ARR++TT+CYDFPLAFETALEQSWA Q P RPKDK LLKVTEL+FAD
Sbjct: 1501 LGVIDRKRLSARRNSTTFCYDFPLAFETALEQSWAIQQPGFRRPKDKNLLKVTELRFADK 1560
Query: 1568 SGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDA 1627
G+WGTPLV VE S GLN++GMVAW M+M TPEFPSGRTIL+VANDVTFKAGSFGPREDA
Sbjct: 1561 EGSWGTPLVPVEHSAGLNDVGMVAWFMDMCTPEFPSGRTILVVANDVTFKAGSFGPREDA 1620
Query: 1628 FFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPED 1687
FF AVTDLACAKKLPLIYLAANSGAR+GVAEEVKACF++GW++E NP+ GF YVYLTPED
Sbjct: 1621 FFRAVTDLACAKKLPLIYLAANSGARLGVAEEVKACFKVGWSEESNPEHGFQYVYLTPED 1680
Query: 1688 YARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLT 1747
+ARIGSSVIAHE+KLESGETRW++D+IVGKEDGLGVENL+GSGAIAG+YSRAYKETFTLT
Sbjct: 1681 FARIGSSVIAHELKLESGETRWIIDTIVGKEDGLGVENLSGSGAIAGSYSRAYKETFTLT 1740
Query: 1748 YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807
YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN
Sbjct: 1741 YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1800
Query: 1808 GVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAIC 1867
GVVHLTVSDDLEG+SAILKWLSY+P H+GG LPI+ PLDPP+RPVEYLPENSCDPRAAI
Sbjct: 1801 GVVHLTVSDDLEGVSAILKWLSYIPSHVGGPLPIVKPLDPPERPVEYLPENSCDPRAAIS 1860
Query: 1868 GFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADP 1927
G LD NG+W+GGIFDKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQTVMQ+IPADP
Sbjct: 1861 GTLDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADP 1920
Query: 1928 GQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL 1987
GQLDSHERVVPQAGQVWFPDSATKTAQA+MDFNREELPLFILANWRGFSGGQRDLFEGIL
Sbjct: 1921 GQLDSHERVVPQAGQVWFPDSATKTAQAIMDFNREELPLFILANWRGFSGGQRDLFEGIL 1980
Query: 1988 QAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047
QAGSTIVENLRTYKQP+FVYIPMM ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE
Sbjct: 1981 QAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2040
Query: 2048 GMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTY 2107
GMIEIKFRT+ELLECMGRLDQKLI L AKLQEAK+ R ESLQQQIK+REKQLLP Y
Sbjct: 2041 GMIEIKFRTRELLECMGRLDQKLITLKAKLQEAKDKRDTESFESLQQQIKSREKQLLPLY 2100
Query: 2108 TQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDY 2167
TQ+ATKFAELHDTSLRMAAKGVI++V+DW SR+ F RRL RR+ E SL+ + AAGD+
Sbjct: 2101 TQIATKFAELHDTSLRMAAKGVIRQVLDWGNSRAVFYRRLYRRIGEQSLINNVREAAGDH 2160
Query: 2168 LTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLT 2227
L+H SA++++K W+L S IA+G++ AWLDDETFF+WK++ NYE K++EL QKVLLQLT
Sbjct: 2161 LSHISAMDLVKNWYLSSNIAKGRKDAWLDDETFFSWKENPSNYEDKLKELRAQKVLLQLT 2220
Query: 2228 NIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
NIG+S DLQALPQGLA LLSK++PS R +L E+ K L
Sbjct: 2221 NIGDSVLDLQALPQGLAALLSKLEPSSRVKLAEELRKVL 2259
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|269852582|gb|ACZ50637.1| homomeric acetyl-CoA carboxylase [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 4015 bits (10412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1905/2259 (84%), Positives = 2086/2259 (92%), Gaps = 2/2259 (0%)
Query: 10 MAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRT 69
MAG+GRGNG+ NG VP R PA +SEVDE+C +LGG +PIHSILIANNGMAAVKFIRS+R+
Sbjct: 1 MAGVGRGNGYTNGVVPNRHPATISEVDEYCNALGGTRPIHSILIANNGMAAVKFIRSVRS 60
Query: 70 WAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129
WAYETFGTE+AILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+
Sbjct: 61 WAYETFGTERAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEI 120
Query: 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189
TRVDAVWPGWGHASE PELPD L KGI+FLGPPA SMAALGDKIGSSLIAQAA VPTLP
Sbjct: 121 TRVDAVWPGWGHASENPELPDALKAKGIVFLGPPAVSMAALGDKIGSSLIAQAAEVPTLP 180
Query: 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249
WSGSHVKIPP+SCLVTIPD++YR+ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV
Sbjct: 181 WSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 240
Query: 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 309
HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH
Sbjct: 241 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH 300
Query: 310 QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQ 369
QKIIEEGPITVAP +TVK+LEQAARRLAK VNYVGAATVEYL+SMETGEYYFLELNPRLQ
Sbjct: 301 QKIIEEGPITVAPPQTVKQLEQAARRLAKSVNYVGAATVEYLFSMETGEYYFLELNPRLQ 360
Query: 370 VEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
VEHPVTEWIAEINLPAAQVA+GMGIPLWQ+PEIRRFYG+EHGG DAWRKTS +ATPFDF
Sbjct: 361 VEHPVTEWIAEINLPAAQVAIGMGIPLWQLPEIRRFYGVEHGGGNDAWRKTSALATPFDF 420
Query: 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 489
D+A+ST+PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS
Sbjct: 421 DKAQSTKPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFS 480
Query: 490 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWL 549
DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLL+ASDYR+NKIHTGWL
Sbjct: 481 DSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRDNKIHTGWL 540
Query: 550 DSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVS 609
DSRIAMRVRAERPPWYLSVVGGALYKASASSAA+VSDY+GYLEKGQIPPKHISLV+SQVS
Sbjct: 541 DSRIAMRVRAERPPWYLSVVGGALYKASASSAALVSDYVGYLEKGQIPPKHISLVHSQVS 600
Query: 610 LNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAG 669
LNIEGSKY IDMVR G GSY LRMN+SE+EAEIHTLRDGGLLMQLDGNSHV+YAEEEAAG
Sbjct: 601 LNIEGSKYTIDMVRGGSGSYRLRMNQSEVEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAG 660
Query: 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729
TRLLIDGRTCLLQNDHDPSKLVAETPCKL+RYLV D SHIDADTPYAEVEVMKMCMPLLS
Sbjct: 661 TRLLIDGRTCLLQNDHDPSKLVAETPCKLMRYLVVDDSHIDADTPYAEVEVMKMCMPLLS 720
Query: 730 PASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRC 789
PASGV+ FKM+EGQ MQAGELIARLDLDDPSAVRKAEPF G FP+LGPPTA S KVHQ+C
Sbjct: 721 PASGVIHFKMSEGQPMQAGELIARLDLDDPSAVRKAEPFNGKFPVLGPPTATSDKVHQKC 780
Query: 790 AASLNAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELES 849
AASL+AA+MILAGYEHNI+EVVQ+LLNCLDSPELP LQWQEC AVL+ RLPKDLKNELES
Sbjct: 781 AASLSAAQMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECFAVLANRLPKDLKNELES 840
Query: 850 KCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRES 909
K KE+ERISS Q VDFPAKLL+G+LEAHL SC +KE+G+QERLIEPL+SLVKSYEGGRES
Sbjct: 841 KYKEYERISSFQVVDFPAKLLKGILEAHLSSCPNKEKGAQERLIEPLLSLVKSYEGGRES 900
Query: 910 HARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLI 969
HAR IVQSLFEEYL VEELFSD IQADVIERLRLQYKKDLLK+VDIVLSHQG+K KNKLI
Sbjct: 901 HARKIVQSLFEEYLFVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGIKSKNKLI 960
Query: 970 LRLMEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL 1029
LRLM++LVYPNPAAYRD+LIRFS LNHTNYS+LALKASQLLEQTKLSELRS+IARSLSEL
Sbjct: 961 LRLMDKLVYPNPAAYRDQLIRFSQLNHTNYSQLALKASQLLEQTKLSELRSNIARSLSEL 1020
Query: 1030 EMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRL 1089
EMFTEDGE++DTPKRKSAI++RMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETY+RRL
Sbjct: 1021 EMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRL 1080
Query: 1090 YQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVII 1149
YQPYLVKGSVRMQWHR GLIASWEFLEE+IERK+G EDQ ++ LVEKH+E+KWG MV+I
Sbjct: 1081 YQPYLVKGSVRMQWHRSGLIASWEFLEEYIERKSGVEDQMSDKTLVEKHTEKKWGVMVVI 1140
Query: 1150 KSLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209
KSL P I++AAL+E ++ ++++S + + +GNMMH+ALVG+NNQMSLLQDSGDED
Sbjct: 1141 KSLHFLPAIITAALKEATNNLHEAVSSAAGEPVKHGNMMHVALVGINNQMSLLQDSGDED 1200
Query: 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEP 1269
QAQERINKLAKILKE+EVGS + GVGVISCIIQRDEGR PMRHSFHWS EK YY+EEP
Sbjct: 1201 QAQERINKLAKILKEEEVGSTIRGTGVGVISCIIQRDEGRTPMRHSFHWSAEKLYYQEEP 1260
Query: 1270 LLRHLEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVD-KPLPIRRMFLRTLVRQPT 1328
LLRHLEPPLSIYLELDKLKGY+NI+YT SRDRQWHLYTV+D KP P +RMFLRTL+RQPT
Sbjct: 1261 LLRHLEPPLSIYLELDKLKGYENIRYTPSRDRQWHLYTVMDQKPQPAQRMFLRTLLRQPT 1320
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+N+GF SY +D T + MSFTSR + RSLMAAMEELELN HNA+++ +HA MYL I
Sbjct: 1321 TNEGFSSYQRTDAETPSTELAMSFTSRSIFRSLMAAMEELELNSHNATIRPEHAHMYLYI 1380
Query: 1389 LREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWM 1448
+REQ+INDLVPYPKRVD+DAGQEET +EA LEELA EIH++VGVRMH+LGV WEVKLWM
Sbjct: 1381 IREQEINDLVPYPKRVDIDAGQEETTVEATLEELAHEIHSSVGVRMHRLGVVVWEVKLWM 1440
Query: 1449 AYSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQS 1508
A QANGAWR+VV NVTGHTC V+IYRE+EDT+ H VVY S+ V+G LHGV VN YQ
Sbjct: 1441 AACAQANGAWRIVVNNVTGHTCTVHIYREMEDTNTHRVVYSSITVKGPLHGVPVNETYQP 1500
Query: 1509 LGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNM-RPKDKALLKVTELKFADD 1567
LGV+D+KRL AR+++TT+CYDFPLAFETALEQSWA Q P RPKDK LLKVTEL+FAD
Sbjct: 1501 LGVIDRKRLSARKNSTTFCYDFPLAFETALEQSWAIQQPGFRRPKDKNLLKVTELRFADK 1560
Query: 1568 SGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDA 1627
G+WGTPLV VE S GLN++GMVAW M+M TPEFPSGRTIL+VANDVTFKAGSFGPREDA
Sbjct: 1561 EGSWGTPLVPVEHSAGLNDVGMVAWFMDMCTPEFPSGRTILVVANDVTFKAGSFGPREDA 1620
Query: 1628 FFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPED 1687
FF AVTDLACAKKLPLIYLAANSGAR+G AEEVKACF++GW++E NP+ GF YVYLTPED
Sbjct: 1621 FFRAVTDLACAKKLPLIYLAANSGARLGAAEEVKACFKVGWSEESNPEHGFQYVYLTPED 1680
Query: 1688 YARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLT 1747
+ARIGSSVIAHE+KLESGETRW++D+IVGKEDGLGVENL+GSGAIAG+YSRAYKETFTLT
Sbjct: 1681 FARIGSSVIAHELKLESGETRWIIDTIVGKEDGLGVENLSGSGAIAGSYSRAYKETFTLT 1740
Query: 1748 YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807
YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN
Sbjct: 1741 YVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1800
Query: 1808 GVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAIC 1867
GVVHLTVSDDLEG+SAILKWLSY+P H+GG+LPI+ PLDPP+RPVEYLPENSCDPRAAI
Sbjct: 1801 GVVHLTVSDDLEGVSAILKWLSYIPSHVGGSLPIVKPLDPPERPVEYLPENSCDPRAAIS 1860
Query: 1868 GFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADP 1927
G LD NG+W+GGIFDKDSFVETLEGWARTVVTGRA+LGGIPVGIVAVETQTVMQ+IPADP
Sbjct: 1861 GTLDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADP 1920
Query: 1928 GQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL 1987
GQLDSHERVVPQAGQVWFPDSATKTAQA+MDFNREELPLFILANWRGFSGGQRDLFEGIL
Sbjct: 1921 GQLDSHERVVPQAGQVWFPDSATKTAQAIMDFNREELPLFILANWRGFSGGQRDLFEGIL 1980
Query: 1988 QAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047
QAGSTIVENLRTYKQP+FVYIPMM ELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE
Sbjct: 1981 QAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2040
Query: 2048 GMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTY 2107
GMIEIKFRT+ELLECMGRLDQKLI L AKLQEAK+ R ESLQQQIK+REKQLLP Y
Sbjct: 2041 GMIEIKFRTRELLECMGRLDQKLITLKAKLQEAKDKRDTESFESLQQQIKSREKQLLPLY 2100
Query: 2108 TQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDY 2167
TQ+ATKFAELHDTSLRMAAKGVI++V+DW SR+ F RRL RR+ E SL+ + AAGD+
Sbjct: 2101 TQIATKFAELHDTSLRMAAKGVIRQVLDWGNSRAVFYRRLYRRIGEQSLINNVREAAGDH 2160
Query: 2168 LTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLT 2227
L+H SA++++K W+L S IA+G++ AWLDDE FF+WK++ NYE K++EL QKVLLQLT
Sbjct: 2161 LSHVSAMDLVKNWYLSSNIAKGRKDAWLDDEAFFSWKENPSNYEDKLKELRAQKVLLQLT 2220
Query: 2228 NIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
NIG+S DLQALPQGLA LLSK++PS R +L E+ K L
Sbjct: 2221 NIGDSVLDLQALPQGLAALLSKLEPSSRVKLAEELRKVL 2259
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2267 | ||||||
| TAIR|locus:2034310 | 2254 | ACC1 "acetyl-CoA carboxylase 1 | 0.991 | 0.996 | 0.803 | 0.0 | |
| CGD|CAL0005630 | 2271 | ACC1 [Candida albicans (taxid: | 0.558 | 0.557 | 0.412 | 0.0 | |
| POMBASE|SPAC56E4.04c | 2280 | cut6 "acetyl-CoA/biotin carbox | 0.471 | 0.469 | 0.437 | 0.0 | |
| ASPGD|ASPL0000003091 | 2288 | accA [Emericella nidulans (tax | 0.472 | 0.468 | 0.433 | 0.0 | |
| SGD|S000005299 | 2233 | ACC1 "Acetyl-CoA carboxylase, | 0.562 | 0.570 | 0.391 | 0.0 | |
| UNIPROTKB|Q13085 | 2346 | ACACA "Acetyl-CoA carboxylase | 0.482 | 0.466 | 0.426 | 0.0 | |
| MGI|MGI:108451 | 2345 | Acaca "acetyl-Coenzyme A carbo | 0.482 | 0.466 | 0.426 | 0.0 | |
| ZFIN|ZDB-GENE-060526-74 | 2383 | acaca "acetyl-Coenzyme A carbo | 0.482 | 0.459 | 0.420 | 0.0 | |
| RGD|621248 | 2345 | Acaca "acetyl-CoA carboxylase | 0.484 | 0.468 | 0.424 | 0.0 | |
| UNIPROTKB|E2RL01 | 2346 | ACACA "Uncharacterized protein | 0.482 | 0.466 | 0.426 | 0.0 |
| TAIR|locus:2034310 ACC1 "acetyl-CoA carboxylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 9448 (3330.9 bits), Expect = 0., P = 0.
Identities = 1813/2257 (80%), Positives = 2004/2257 (88%)
Query: 14 GRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYE 73
G NG+ + P + +S+VDEFC++L GK+PIHSILIANNGMAAVKFIRS+RTWAYE
Sbjct: 3 GSVNGNHSAVGPGINYETVSQVDEFCKALRGKRPIHSILIANNGMAAVKFIRSVRTWAYE 62
Query: 74 TFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVD 133
TFGTEKAILLV MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE+TRVD
Sbjct: 63 TFGTEKAILLVGMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVD 122
Query: 134 AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193
AVWPGWGHASE PELPD L KGIIFLGPPA+SMAALGDKIGSSLIAQAA+VPTLPWSGS
Sbjct: 123 AVWPGWGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLPWSGS 182
Query: 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 253
HVKIPP S LVTIP+++YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD
Sbjct: 183 HVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDD 242
Query: 254 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKII 313
EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD++GNV+ALHSRDCSVQRRHQKII
Sbjct: 243 EVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRHQKII 302
Query: 314 EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHP 373
EEGPITVAP ETVKKLEQAARRLAK VNYVGAATVEYLYSM+TGEYYFLELNPRLQVEHP
Sbjct: 303 EEGPITVAPPETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEHP 362
Query: 374 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAE 433
VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG+EHGG YD+WRKTSV+A PFDFD+A+
Sbjct: 363 VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGIEHGGGYDSWRKTSVVAFPFDFDKAQ 422
Query: 434 STRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 493
S RPKGHCVAVRVTSEDPDDGFKPTSG+VQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF
Sbjct: 423 SIRPKGHCVAVRVTSEDPDDGFKPTSGRVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQF 482
Query: 494 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYR+NKIHTGWLDSRI
Sbjct: 483 GHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRDNKIHTGWLDSRI 542
Query: 554 AMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIE 613
AMRVRAERPPWYLSVVGGALYKASA+SAA+VSDY+GYLEKGQIPPKHISLV+SQVSLNIE
Sbjct: 543 AMRVRAERPPWYLSVVGGALYKASATSAAVVSDYVGYLEKGQIPPKHISLVHSQVSLNIE 602
Query: 614 GSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLL 673
GSKY ID+VR G G+Y LRMN+SE+ AEIHTLRDGGLLMQLDG SHV+YAEEEAAGTRLL
Sbjct: 603 GSKYTIDVVRGGSGTYRLRMNKSEVVAEIHTLRDGGLLMQLDGKSHVIYAEEEAAGTRLL 662
Query: 674 IDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG 733
IDGRTCLLQNDHDPSKL+AETPCKL+RYL+SD S+IDADTPYAEVEVMKMCMPLLSPASG
Sbjct: 663 IDGRTCLLQNDHDPSKLMAETPCKLMRYLISDNSNIDADTPYAEVEVMKMCMPLLSPASG 722
Query: 734 VLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASL 793
V+ FKM+EGQAMQAGELIA LDLDDPSAVRKAEPF+GSFP LG PTAISG+VHQRCAA+L
Sbjct: 723 VIHFKMSEGQAMQAGELIANLDLDDPSAVRKAEPFHGSFPRLGLPTAISGRVHQRCAATL 782
Query: 794 NAARMILAGYEHNIEEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKE 853
NAARMILAGYEH ++EVVQ+LLNCLDSPELP LQWQEC AVL+TRLPK+L+N LESK +E
Sbjct: 783 NAARMILAGYEHKVDEVVQDLLNCLDSPELPFLQWQECFAVLATRLPKNLRNMLESKYRE 842
Query: 854 FERIS-SSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912
FE IS +S DFPAKLL+G+LEAHL SC +KERG+ ERLIEPLMSL KSYEGGRESHAR
Sbjct: 843 FESISRNSLTTDFPAKLLKGILEAHLSSCDEKERGALERLIEPLMSLAKSYEGGRESHAR 902
Query: 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRL 972
VIV SLFEEYLSVEELF+D + ADVIER+R YKKDLLK+VDIVLSHQG+K KNKL+LRL
Sbjct: 903 VIVHSLFEEYLSVEELFNDNMLADVIERMRQLYKKDLLKIVDIVLSHQGIKNKNKLVLRL 962
Query: 973 MEQLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSELEMF 1032
MEQLVYPNPAAYRDKLIRFS LNHTNYSELALKASQLLEQTKLSELRS+IARSLSELEMF
Sbjct: 963 MEQLVYPNPAAYRDKLIRFSTLNHTNYSELALKASQLLEQTKLSELRSNIARSLSELEMF 1022
Query: 1033 TEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQP 1092
TEDGE+MDTPKRKSAI+ER+EDLVSA LAVEDALVGLFDHSDHTLQRRVVETY+RRLYQP
Sbjct: 1023 TEDGENMDTPKRKSAINERIEDLVSASLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQP 1082
Query: 1093 YLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPED-QTPEQPLVEKHSERKWGAMVIIK 1150
Y+VK SVRMQWHR GL+ASWEFLEEH+ERKN G +D T E+ LVEK S+RKWGAMVIIK
Sbjct: 1083 YVVKDSVRMQWHRSGLLASWEFLEEHMERKNIGLDDPDTSEKGLVEKRSKRKWGAMVIIK 1142
Query: 1151 SLQSFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQ 1210
SLQ P I+SAALRET H ND + G+ + GNMMHIA+VG+NNQMSLLQDSGDEDQ
Sbjct: 1143 SLQFLPSIISAALRETKH--NDYETAGAPLS---GNMMHIAIVGINNQMSLLQDSGDEDQ 1197
Query: 1211 AQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYXXXXX 1270
AQER+NKLAKILKE+EV S L SAGVGVISCIIQRDEGR PMRHSFHWS EK YY
Sbjct: 1198 AQERVNKLAKILKEEEVSSSLCSAGVGVISCIIQRDEGRTPMRHSFHWSLEKQYYVEEPL 1257
Query: 1271 XXXXXXXXSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSN 1330
SIYLELDKLKGY NIQYT SRDRQWHLYTV DKP+PI+RMFLR+LVRQ T N
Sbjct: 1258 LRHLEPPLSIYLELDKLKGYSNIQYTPSRDRQWHLYTVTDKPVPIKRMFLRSLVRQATMN 1317
Query: 1331 DGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCILR 1390
DGF+ D ++ +M+FTS+ VLRSLM AMEELELN HNA++K DHA M+LCILR
Sbjct: 1318 DGFILQQGQDKQLSQTLISMAFTSKCVLRSLMDAMEELELNAHNAAMKPDHAHMFLCILR 1377
Query: 1391 EQKINDLVPYPKRVDVDAGQXXXXXXXXXXXXXXXIHATVGVRMHKLGVCEWEVKLWMAY 1450
EQ+I+DLVP+P+RV+V+A IH +VGVRMH+LGVCEWEV+LW+
Sbjct: 1378 EQQIDDLVPFPRRVEVNAEDEETTVEMILEEAAREIHRSVGVRMHRLGVCEWEVRLWLVS 1437
Query: 1451 SGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLG 1510
SG A GAWRVVV NVTG TC V+IYRE+E +++++YHS+ +G LH ++ QY+ LG
Sbjct: 1438 SGLACGAWRVVVANVTGRTCTVHIYREVETPGRNSLIYHSITKKGPLHETPISDQYKPLG 1497
Query: 1511 VLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMR-PKDKALLKVTELKFADDSG 1569
LD++RL ARRSNTTYCYDFPLAF TALE WASQ P ++ P L+ V EL F+ G
Sbjct: 1498 YLDRQRLAARRSNTTYCYDFPLAFGTALELLWASQHPGVKKPYKDTLINVKELVFSKPEG 1557
Query: 1570 TWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFF 1629
+ GT L LVER PGLN+ GMVAWC++M TPEFP GR +L++ANDVTFKAGSFGPREDAFF
Sbjct: 1558 SSGTSLDLVERPPGLNDFGMVAWCLDMSTPEFPMGRKLLVIANDVTFKAGSFGPREDAFF 1617
Query: 1630 LAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYA 1689
LAVT+LACAKKLPLIYLAANSGAR+GVAEEVKACF++GW+DE++P+ GF Y+YL+PED+
Sbjct: 1618 LAVTELACAKKLPLIYLAANSGARLGVAEEVKACFKVGWSDEISPENGFQYIYLSPEDHE 1677
Query: 1690 RIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYV 1749
RIGSSVIAHE+KL SGETRWV+D+IVGKEDG+GVENLTGSGAIAGAYS+AY ETFTLT+V
Sbjct: 1678 RIGSSVIAHEVKLSSGETRWVIDTIVGKEDGIGVENLTGSGAIAGAYSKAYNETFTLTFV 1737
Query: 1750 TGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGV 1809
+GRTVGIGAYLARLGMRCIQRLDQPIILTGFS LNKLLGREVYSSHMQLGGPKIM TNGV
Sbjct: 1738 SGRTVGIGAYLARLGMRCIQRLDQPIILTGFSTLNKLLGREVYSSHMQLGGPKIMGTNGV 1797
Query: 1810 VHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPENSCDPRAAICGF 1869
VHLTVSDDLEG+SAIL WLSY+P ++GG LP+++PLDPP+R VEY+PENSCDPRAAI G
Sbjct: 1798 VHLTVSDDLEGVSAILNWLSYIPAYVGGPLPVLAPLDPPERIVEYVPENSCDPRAAIAGV 1857
Query: 1870 LDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929
DN GKW+GGIFDK+SF+ETLEGWARTVVTGRA+LGGIPVG+VAVETQTVMQ+IPADPGQ
Sbjct: 1858 KDNTGKWLGGIFDKNSFIETLEGWARTVVTGRAKLGGIPVGVVAVETQTVMQIIPADPGQ 1917
Query: 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA 1989
LDSHERVVPQAGQVWFPDSA KTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA
Sbjct: 1918 LDSHERVVPQAGQVWFPDSAAKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA 1977
Query: 1990 GSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049
GSTIVENLRTY+QPVFVYIPMM ELRGGAWVVVDS+INSD++EMYAD TA+GNVLEPEG
Sbjct: 1978 GSTIVENLRTYRQPVFVYIPMMGELRGGAWVVVDSQINSDYVEMYADETARGNVLEPEGT 2037
Query: 2050 IEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQ 2109
IEIKFRTKELLECMGRLDQKLI L AKLQ+AK + A +E LQQQIKAREKQLLP Y Q
Sbjct: 2038 IEIKFRTKELLECMGRLDQKLISLKAKLQDAKQSEAYANIELLQQQIKAREKQLLPVYIQ 2097
Query: 2110 VATKFAELHDTSLRMAAKGVIKEVVDWDKXXXXXXXXXXXXVAESSLVKTLTAAAGDYLT 2169
+ATKFAELHDTS+RMAAKGVIK VV+W +AESSLVK + A+GD L
Sbjct: 2098 IATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKKLNRRIAESSLVKNVREASGDNLA 2157
Query: 2170 HKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNI 2229
+KS++ +I+ WF +S+IA+GKE AW DD+ FFTWKD+ NYE K+ EL QK+L QL I
Sbjct: 2158 YKSSMRLIQDWFCNSDIAKGKEEAWTDDQVFFTWKDNVSNYELKLSELRAQKLLNQLAEI 2217
Query: 2230 GNSTSDLQALPQGLATLLSKVDPSCREQLIGEISKAL 2266
GNS SDLQALPQGLA LL+KV+PS RE+L+ I K L
Sbjct: 2218 GNS-SDLQALPQGLANLLNKVEPSKREELVAAIRKVL 2253
|
|
| CGD|CAL0005630 ACC1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 2357 (834.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 551/1335 (41%), Positives = 768/1335 (57%)
Query: 30 AAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATP 89
A S+V +F R+ G I ILIANNG+AAVK IRS+R WAYETFG EKAI MATP
Sbjct: 81 AEPSKVRDFVRAHQGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDEKAIQFTVMATP 140
Query: 90 EDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP 149
ED+ NAE+IR+ADQF+EVPGGTNNNNYANV LIVE+AE T AVW GWGHASE P LP
Sbjct: 141 EDLEANAEYIRMADQFIEVPGGTNNNNYANVDLIVEIAESTNAHAVWAGWGHASENPLLP 200
Query: 150 DTL--STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS---HVKIPPESCLV 204
+ L S K IIF+GPP ++M +LGDKI S+++AQ A VP +PWSG+ VKI P++ LV
Sbjct: 201 EKLAASPKKIIFIGPPGSAMRSLGDKISSTIVAQHAQVPCIPWSGTGVDEVKIDPQTNLV 260
Query: 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG 264
++ DD+Y + C + E+ + + +G+P MIKAS GGGGKGIRKV ++ L+ Q
Sbjct: 261 SVADDIYAKGCCTSPEDGLEKAKKIGFPVMIKASEGGGGKGIRKVDDEKNFITLYNQAAN 320
Query: 265 EVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLE 324
E+PGSPIFIMK+A +RHLEVQLL DQYG +L RDCSVQRRHQKIIEE P+T+A E
Sbjct: 321 EIPGSPIFIMKLAGDARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIARKE 380
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384
T ++E AA RL K V YV A TVEYLYS ++YFLELNPRLQVEHP TE + +NLP
Sbjct: 381 TFHEMENAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPRLQVEHPTTEMVTGVNLP 440
Query: 385 AAQVAVGMGIPLWQIPEIRRFYGME-HGGV---YDAWRKTSVIATPFDFDQAESTRPKGH 440
AAQ+ + MGIP+ +I +IR YG + H ++ +TS+++ Q T PKGH
Sbjct: 441 AAQLQIAMGIPMHRIRDIRTLYGADPHTTTDIDFEFKSETSLVS------QRRPT-PKGH 493
Query: 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFG 500
C A R+TSEDP +GFKP+ G + EL+F+S NVW YFSV + IH FSDSQFGH+FAFG
Sbjct: 494 CTACRITSEDPGEGFKPSGGSLHELNFRSSSNVWGYFSVGNQSSIHSFSDSQFGHIFAFG 553
Query: 501 ESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAE 560
E+R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I TGWLD I ++ AE
Sbjct: 554 ENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETPDFEDNTITTGWLDELITKKLTAE 613
Query: 561 RPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRID 620
RP ++VV GA+ K + +YI LEKGQ+P +++ V EG +Y+
Sbjct: 614 RPDPIVAVVCGAVTKVHIQAEEEKKEYIQSLEKGQVPHRNLLKTIFPVEFIYEGERYKFT 673
Query: 621 MVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCL 680
+ YTL +N S +L DGGLL LDG SH VY +EEA+ TRL +DG+TCL
Sbjct: 674 ATKSSEDKYTLFLNGSRCVVGARSLSDGGLLCALDGKSHSVYWKEEASATRLSVDGKTCL 733
Query: 681 LQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMA 740
L+ ++DP++L +P KL++YLV G H+DA PYAEVEVMKMCMPL++ +GV+Q
Sbjct: 734 LEVENDPTQLRTPSPGKLVKYLVDSGEHVDAGQPYAEVEVMKMCMPLIAQENGVVQLIKQ 793
Query: 741 EGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGK-VHQ--RCAASLNAAR 797
G + AG+++A L LDDPS V+ A+PF G+ P +G P K H+ CA L +
Sbjct: 794 PGSTVNAGDILAILALDDPSKVKHAKPFEGTLPSMGEPNVTGTKPAHKFNHCAGIL---K 850
Query: 798 MILAGYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFE 855
ILAGY++ + +++L L ELP +WQ+ ++ L +RLP L + L + E
Sbjct: 851 NILAGYDNQVILNSTLKSLGEVLKDNELPYSEWQQQISALHSRLPPKLDDGLTALV---E 907
Query: 856 RISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHARVIV 915
R + S+ +FPA R +L+ S A+ E ++ PL+S+ SY+ G H
Sbjct: 908 R-TQSRGAEFPA---RQILKLITKSIAENGNDMLEDVVAPLVSIATSYQNGLVEHEYDYF 963
Query: 916 QSLFEEYLSVEELFS-DQIQAD-VIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLM 973
SL EY VE LFS + ++ D VI +LR + K DL KV+ I LSH V KN LIL ++
Sbjct: 964 ASLINEYYDVESLFSGENVREDNVILKLRDENKSDLKKVIGIGLSHSRVSAKNNLILAIL 1023
Query: 974 ---EQLVYPNP---AAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRS---SIAR 1024
E L+ N A+ R+ L + L+ +++ALKA ++L Q L ++ +
Sbjct: 1024 DIYEPLLQSNSSVAASIREALKKLVQLDSRACAKVALKAREILIQCSLPSIKERSDQLEH 1083
Query: 1025 SLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVET 1084
L + T GE K + E + ++V + V D L + D + E
Sbjct: 1084 ILRSSVVQTSYGEIF--AKHREPNLEIIREVVDSKHIVFDVLAQFLINPDPWVAIAAAEV 1141
Query: 1085 YVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWG 1144
YVRR Y+ Y + G + + I W+F ++ + Q + + K
Sbjct: 1142 YVRRSYRAYDL-GKIEYHVNDRLPIVEWKFKLANMGAAGVNDAQQAAAAGGDDSTSMKHA 1200
Query: 1145 AMV-----IIKSLQSFPD---ILSAA-----LRETAHSRNDSISKGSAQTASYGNMMHIA 1191
A V ++ S +L+ A + ET + + A +
Sbjct: 1201 ASVSDLTFVVDSKTEHSTRTGVLAPARHLDDVDETLTAALEQFQPADAISFKAKGETPEL 1260
Query: 1192 LVGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAP 1251
L +N ++ + DE++ RIN++ KE+ L SAGV ++ + G+ P
Sbjct: 1261 LNVLNIVITSIDGYSDENEYLSRINEILCEYKEE-----LISAGVRRVTFVFAHQIGQYP 1315
Query: 1252 MRHSFHWSPEKFYYXXXXXXXXXXXXXSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK 1311
++F P+ Y + LEL +L +D I+ + +R H+Y + K
Sbjct: 1316 KYYTFT-GPD---YEENKVIRHIEPALAFQLELGRLANFD-IKPIFTNNRNIHVYDAIGK 1370
Query: 1312 PLPI-RRMFLRTLVR 1325
P +R F R ++R
Sbjct: 1371 NAPSDKRFFTRGIIR 1385
|
|
| POMBASE|SPAC56E4.04c cut6 "acetyl-CoA/biotin carboxylase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 2300 (814.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 486/1111 (43%), Positives = 696/1111 (62%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
++PA +V ++ S GG I SILIANNG+AAVK IRSIR WAYETF E+AI M
Sbjct: 50 KAPAG--KVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKFTVM 107
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
ATP+D+++NA++IR+ADQ+VEVPGG+NNNNYANV+LIV++AE V AVW GWGHASE P
Sbjct: 108 ATPDDLKVNADYIRMADQYVEVPGGSNNNNYANVELIVDIAERMNVHAVWAGWGHASENP 167
Query: 147 ELPDTLS--TKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH---VKIPPES 201
+LP+ LS +K I+F+GPP ++M +LGDKI S+++AQ+A VP + WSG+ V+I E+
Sbjct: 168 KLPEMLSASSKKIVFIGPPGSAMRSLGDKISSTIVAQSARVPCMSWSGNELDQVRIDEET 227
Query: 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261
+VT+ DDVY++AC+ + EE IA + +GYP MIKAS GGGGKGIR+V + ++ F+Q
Sbjct: 228 NIVTVDDDVYQKACIRSAEEGIAVAEKIGYPVMIKASEGGGGKGIRQVTSTEKFAQAFQQ 287
Query: 262 VQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVA 321
V E+PGSP+F+MK+A Q+RHLEVQ+L DQYGN +L RDCSVQRRHQKIIEE P+T+A
Sbjct: 288 VLDELPGSPVFVMKLAGQARHLEVQILADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIA 347
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEI 381
P T ++E+AA RL + V Y A T+EYLY E +YFLELNPRLQVEHP TE ++ +
Sbjct: 348 PAATFHEMERAAVRLGELVGYASAGTIEYLYEPENDRFYFLELNPRLQVEHPTTEMVSGV 407
Query: 382 NLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441
NLPAAQ+ V MG+PL +IP IR YG+ G D+ P F + PKGHC
Sbjct: 408 NLPAAQLQVAMGLPLSRIPHIRELYGLPRDG--DS-EIDFFFQNPESFKVQKVPTPKGHC 464
Query: 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501
VA R+TSEDP +GFKP+SG +++L+F+S NVW YFSV + GGIHEF+DSQFGH+F+F E
Sbjct: 465 VACRITSEDPGEGFKPSSGMIKDLNFRSSSNVWGYFSVGTAGGIHEFADSQFGHIFSFAE 524
Query: 502 SRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER 561
SR + +MV+ LKE+ IRG+ RT V+Y + LL ++ EN+ TGWLD IA +V + R
Sbjct: 525 SRESSRKSMVVALKELSIRGDFRTTVEYLVRLLETKEFSENEFTTGWLDRLIAQKVTSAR 584
Query: 562 PPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDM 621
P L+VV GAL +A A++ + YLE+GQ+P + + + ++YR
Sbjct: 585 PDKMLAVVCGALVRAHATADTQYRAFKSYLERGQVPSREFLKNVYDIEFIYDNTRYRFTA 644
Query: 622 VRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLL 681
R PGSY L +N S A + +L DGGLL+ L+G+S+ VY +E GTR+ ID +C+L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNLSCML 704
Query: 682 QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAE 741
+ ++DP++L +P KL+R+LV G HI A YAEVEVMKM MPL++ GV+Q
Sbjct: 705 EQENDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQP 764
Query: 742 GQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILA 801
G ++ AG+++ L LDDPS V A PF G P G P K QR A L IL
Sbjct: 765 GASLDAGDILGILTLDDPSRVTHALPFDGQLPNWGEPQIAGNKPCQRYHALLCILLDILK 824
Query: 802 GYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISS 859
GY++ I + L + ELP +W + L R+ L S ++ +
Sbjct: 825 GYDNQIILNSTYNEFVEVLRNHELPYSEWSAHYSALVNRISPVLDKLFVSIIEK----AR 880
Query: 860 SQNVDFPAKLLRGVLEAHLLSCADKERGSQERL---IEPLMSLVKSYEGGRESHARVIVQ 916
S+ +FPAK L ++ + C + + ++L I PL+ ++ Y+ G + H +++
Sbjct: 881 SRKAEFPAKQLEVAIQTY---CDGQNLATTQQLKVQIAPLLKIISDYKDGLKVHEYNVIK 937
Query: 917 SLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLME 974
L EEY +VE+LFS ++ + DVI RLR + K D+ KV+ + LSH + KN L++ +++
Sbjct: 938 GLLEEYYNVEKLFSGINKREEDVILRLRDENKDDVDKVIALALSHSRIGSKNNLLITILD 997
Query: 975 QLVYPNPAAY-----RDKLIRFSALNHTNYSELALKASQLL---EQTKLSELRSSIARSL 1026
L+ P+ + D L + + L+ S+++LKA +LL L+E S + L
Sbjct: 998 -LMKSEPSTFVSLYFNDILRKLTDLDSRVTSKVSLKARELLITCAMPSLNERFSQMEHIL 1056
Query: 1027 SELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYV 1086
+ + G++ + R ++D +++L+ + V D L F H+D + +E YV
Sbjct: 1057 KSSVVESHYGDAKFS-HRTPSLDI-LKELIDSKYTVFDVLPAFFCHTDPWVSLAALEVYV 1114
Query: 1087 RRLYQPYLVKGSVRMQWH-RCGL--IASWEF 1114
RR Y+ Y V + + +H G + +W F
Sbjct: 1115 RRAYRAYSV---LEINYHTEAGTPYVLTWRF 1142
|
|
| ASPGD|ASPL0000003091 accA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 2277 (806.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 489/1128 (43%), Positives = 697/1128 (61%)
Query: 16 GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETF 75
G H++ A P S V +F + G I S+LIANNG+AAVK IRS+R WAYETF
Sbjct: 27 GGNHLDAAAP-------SSVKDFVANHEGHSVITSVLIANNGIAAVKEIRSVRKWAYETF 79
Query: 76 GTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAV 135
G E+AI MATPED+ NA++IR+ADQ+VEVPGGTNNNNYANV+LIV++AE V AV
Sbjct: 80 GNERAIQFTVMATPEDLAANADYIRMADQYVEVPGGTNNNNYANVELIVDVAERMDVHAV 139
Query: 136 WPGWGHASEIPELPDTL--STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193
W GWGHASE P LP++L S K IIF+GPPA++M +LGDKI S+++AQ A VP +PWSG+
Sbjct: 140 WAGWGHASENPRLPESLAASPKKIIFIGPPASAMRSLGDKISSTIVAQHAQVPCIPWSGT 199
Query: 194 ---HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH 250
VK+ E+ +VT+ ++VY + C ++ EE + + +G+P MIKAS GGGGKGIRKV
Sbjct: 200 GVDEVKVD-ENGIVTVEEEVYNKGCTFSPEEGLEKAKQIGFPVMIKASEGGGGKGIRKVE 258
Query: 251 NDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ 310
+++ L+ E+PGSPIFIMK+A +RHLEVQLL DQYGN +L RDCSVQRRHQ
Sbjct: 259 KEEDFINLYNAAANEIPGSPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQRRHQ 318
Query: 311 KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQV 370
KIIEE P+T+A T + +E+AA L K V YV A TVEYLYS ++YFLELNPRLQV
Sbjct: 319 KIIEEAPVTIANPTTFQAMERAAVSLGKLVGYVSAGTVEYLYSHADDKFYFLELNPRLQV 378
Query: 371 EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430
EHP TE + +NLPAAQ+ + MGIPL +I +IR YG++ TS FDF
Sbjct: 379 EHPTTEMVTGVNLPAAQLQIAMGIPLHRIRDIRLLYGVDPN--------TSA-EIDFDFS 429
Query: 431 QAESTR------PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGG 484
ES + PKGH A R+TSEDP +GFKP+SG + EL+F+S NVW YFSV + GG
Sbjct: 430 SEESFKTQRRPQPKGHTTACRITSEDPGEGFKPSSGTMHELNFRSSSNVWGYFSVGTAGG 489
Query: 485 IHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKI 544
IH FSDSQFGH+FA+GE+R+ + +MV+ LKE+ IRG+ RT ++Y I LL + ENKI
Sbjct: 490 IHSFSDSQFGHIFAYGENRSASRKHMVIALKELSIRGDFRTTIEYLIKLLETPAFEENKI 549
Query: 545 HTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLV 604
TGWLD I+ ++ AERP ++V+ GA+ KA +S A + +Y ++KGQ+P K +
Sbjct: 550 TTGWLDQLISNKLTAERPDTTIAVLCGAVTKAHQASEARLEEYRNGIQKGQVPSKDVLKT 609
Query: 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAE 664
V EG +Y+ R G SY L +N S+ + L DGGLL+ L+G SH VY +
Sbjct: 610 VFPVDFIYEGKRYKFTATRAGLDSYHLFINGSKCSIGVRALADGGLLVLLNGRSHNVYWK 669
Query: 665 EEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC 724
EEAA TR+ +DG+TCLL+ ++DP++L +P KL+++ V +G H+ A P+AEVEVMKM
Sbjct: 670 EEAAATRISVDGKTCLLEQENDPTQLRTPSPGKLVKFTVENGEHVRAGQPFAEVEVMKMY 729
Query: 725 MPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGK 784
MPL++ G++Q G ++AG+++ L LDDPS V+ A+PF P +GPP + K
Sbjct: 730 MPLIAQEDGIVQLIKQPGATLEAGDILGILALDDPSRVKHAQPFTEQLPPIGPPQVVGNK 789
Query: 785 VHQRCAASLNAARMILAGYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKD 842
QR + IL G+++ + ++ L+ L PELP +W + L +R+P+
Sbjct: 790 PAQRFFLLHSILENILKGFDNQVIMNSTLKELIEVLRDPELPYSEWNAQSSALHSRMPQK 849
Query: 843 LKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHL---LSCADKERGSQERLIEPLMSL 899
L +L++ +R + S+ +FPA+ L+ + + ++ AD E + + PL+ +
Sbjct: 850 LDAQLQNIV---DR-ARSRKAEFPARQLQKTMVRFIEENVNPADAE--ILKTTLLPLVQV 903
Query: 900 VKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQA--DVIERLRLQYKKDLLKVVDIVL 957
+ +Y G ++H + L E+Y +VE+LFS D I LR ++K D+ +V I L
Sbjct: 904 INNYIEGLKAHEYKVFVGLLEQYYAVEKLFSGSKARYEDGILALREEHKDDVATIVQIAL 963
Query: 958 SHQGVKRKNKLILRLMEQLVY-PN-PAA------YRDKLIRFSALNHTNYSELALKASQL 1009
SH + KN LIL ++ +Y PN P ++ L + + + +++ LKA ++
Sbjct: 964 SHSRIGAKNDLILAILS--IYRPNQPGMANVGQYFKSILKKLTEIESRAAAKVTLKAREV 1021
Query: 1010 LEQTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAID-ERMEDLVSAPLAVEDALVG 1068
L Q L L +++ L + + +T D ++++V + V D L
Sbjct: 1022 LIQCALPSLEERLSQMELILRSSVAESQYGETGWAHREPDLGALKEVVDSKYTVFDVLPR 1081
Query: 1069 LFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIA--SWEF 1114
F H D + +E YVRR Y+ Y ++G +Q+H G A SW+F
Sbjct: 1082 FFVHKDAWVTLAALEVYVRRAYRAYSIQG---IQYHHEGEPAFLSWDF 1126
|
|
| SGD|S000005299 ACC1 "Acetyl-CoA carboxylase, biotin containing enzyme" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 2276 (806.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 528/1347 (39%), Positives = 769/1347 (57%)
Query: 18 GHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGT 77
GH G + S + +F +S GG I ILIANNG+AAVK IRS+R WAYETFG
Sbjct: 30 GHFIGLNTV-DKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGD 88
Query: 78 EKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP 137
++ + VAMATPED+ NAE+IR+ADQ++EVPGGTNNNNYANV LIV++AE VDAVW
Sbjct: 89 DRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWA 148
Query: 138 GWGHASEIPELPDTLST--KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195
GWGHASE P LP+ LS + +IF+GPP +M +LGDKI S+++AQ+A VP +PWSG+ V
Sbjct: 149 GWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGV 208
Query: 196 K---IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252
+ ++ LV++ DD+Y++ C + E+ + + +G+P MIKAS GGGGKGIR+V +
Sbjct: 209 DTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVERE 268
Query: 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI 312
++ AL+ Q E+PGSPIFIMK+A ++RHLEVQLL DQYG +L RDCSVQRRHQKI
Sbjct: 269 EDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKI 328
Query: 313 IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372
IEE P+T+A ET ++E+AA RL K V YV A TVEYLYS + G++YFLELNPRLQVEH
Sbjct: 329 IEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEH 388
Query: 373 PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQA 432
P TE ++ +NLPAAQ+ + MGIP+ +I +IR YGM S I F+F
Sbjct: 389 PTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNP-------HSASEI--DFEFKTQ 439
Query: 433 ESTR------PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIH 486
++T+ PKGHC A R+TSEDP+DGFKP+ G + EL+F+S NVW YFSV + G IH
Sbjct: 440 DATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIH 499
Query: 487 EFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHT 546
FSDSQFGH+FAFGE+R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I T
Sbjct: 500 SFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITT 559
Query: 547 GWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNS 606
GWLD I ++ AE+P L+V+ GA KA +S YI L+KGQ+ K +
Sbjct: 560 GWLDDLITHKMTAEKPDPTLAVICGAATKAFLASEEARHKYIESLQKGQVLSKDLLQTMF 619
Query: 607 QVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE 666
V EG +Y+ + + G YTL +N S+ + + L DGGLL+ + G SH +Y +EE
Sbjct: 620 PVDFIHEGKRYKFTVAKSGNDRYTLFINGSKCDIILRQLSDGGLLIAIGGKSHTIYWKEE 679
Query: 667 AAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP 726
A TRL +D T LL+ ++DP++L +P KL+++LV +G HI PYAE+EVMKM MP
Sbjct: 680 VAATRLSVDSMTTLLEVENDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMP 739
Query: 727 LLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVH 786
L+S +G++Q G + AG+++A + LDDPS V+ A PF G P G P K
Sbjct: 740 LVSQENGIVQLLKQPGSTIVAGDIMAIMTLDDPSKVKHALPFEGMLPDFGSPVIEGTKPA 799
Query: 787 QRCAASLNAARMILAGYEHNI--EEVVQNLLNCLDSPELPLLQWQECMAVLSTRLPKDLK 844
+ + ++ IL GY++ + +Q L+ L +P+LP +W+ ++ L +RLP L
Sbjct: 800 YKFKSLVSTLENILKGYDNQVIMNASLQQLIEVLRNPKLPYSEWKLHISALHSRLPAKLD 859
Query: 845 NELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCA---DKERGSQERLIEPLMSLVK 901
++E E S + FPA+ L +++ + + DK G+ ++EPL +
Sbjct: 860 EQME----ELVARSLRRGAVFPARQLSKLIDMAVKNPEYNPDKLLGA---VVEPLADIAH 912
Query: 902 SYEGGRESHARVIVQSLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSH 959
Y G E+H I EEY VE+LF+ + + ++I +LR + KDL KV VLSH
Sbjct: 913 KYSNGLEAHEHSIFVHFLEEYYEVEKLFNGPNVREENIILKLRDENPKDLDKVALTVLSH 972
Query: 960 QGVKRKNKLILRLME------QLVYPNPAAYRDKLIRFSALNHTNYSELALKASQLLEQT 1013
V KN LIL +++ +L A + L L +++AL+A ++L Q
Sbjct: 973 SKVSAKNNLILAILKHYQPLCKLSSKVSAIFSTPLQHIVELESKATAKVALQAREILIQG 1032
Query: 1014 KLSELRS---SIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLF 1070
L ++ I L + G S PKR ++DL+ + V D L+
Sbjct: 1033 ALPSVKERTEQIEHILKSSVVKVAYGSS--NPKRSEPDLNILKDLIDSNYVVFDVLLQFL 1090
Query: 1071 DHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEF-LEEH-------IERK 1122
H D + + Y+RR Y+ Y + G +R+ I W+F L ++ K
Sbjct: 1091 THQDPVVTAAAAQVYIRRAYRAYTI-GDIRVHEGVTVPIVEWKFQLPSAAFSTFPTVKSK 1149
Query: 1123 NGPEDQTPEQPL-VEKHSERKWGAMVIIKSLQSFPDILSAALRETAH--SRNDSISKGSA 1179
G L +S+ I+ ++ D+ L ++ R+ S S G A
Sbjct: 1150 MGMNRAVSVSDLSYVANSQSSPLREGILMAVDHLDDV-DEILSQSLEVIPRHQSSSNGPA 1208
Query: 1180 QTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVI 1239
S G+ ++ V N ++ + E++ R+ ++ + K++ L +A + I
Sbjct: 1209 PDRS-GSSASLSNVA-NVCVASTEGFESEEEILVRLREILDLNKQE-----LINASIRRI 1261
Query: 1240 SCIIQRDEGRAPMRHSFHWSPEKFYYXXXXXXXXXXXXXSIYLELDKLKGYDNIQYTLSR 1299
+ + +G P ++F+ P Y + LEL +L + NI+ +
Sbjct: 1262 TFMFGFKDGSYPKYYTFN-GPN---YNENETIRHIEPALAFQLELGRLSNF-NIKPIFTD 1316
Query: 1300 DRQWHLYTVVDKPLPI-RRMFLRTLVR 1325
+R H+Y V K P+ +R F R ++R
Sbjct: 1317 NRNIHVYEAVSKTSPLDKRFFTRGIIR 1343
|
|
| UNIPROTKB|Q13085 ACACA "Acetyl-CoA carboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2269 (803.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 488/1145 (42%), Positives = 703/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 136 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ + ++ +P ++Y + V ++ + + + VGYP MIKAS G
Sbjct: 256 PTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P T+A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G D+
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG--DS---- 488
Query: 421 SVIATPFDF-DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF D A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 -----PIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A S VS+++ LE+GQ+ P
Sbjct: 604 QMNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSVSNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 664 HTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A YAE+E
Sbjct: 724 TTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G ++A++ LD+PS V++AE GS P + T
Sbjct: 784 VMKMVMTLTAVESGCIHYVKRPGAALDPGCVLAKMQLDNPSKVQQAELHTGSLPRI-QST 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 963 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1023 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1190
Query: 1121 RKNGP 1125
R N P
Sbjct: 1191 RGNIP 1195
|
|
| MGI|MGI:108451 Acaca "acetyl-Coenzyme A carboxylase alpha" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2265 (802.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 488/1145 (42%), Positives = 702/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 75 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 134
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 135 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 194
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 195 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 254
Query: 186 PTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ + ++ +P D+Y + V ++ + + + VGYP MIKAS G
Sbjct: 255 PTLPWSGSGLRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEG 314
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 315 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 374
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 375 RDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 433
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G DA
Sbjct: 434 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWG--DA---- 487
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 488 -----PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 542
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 543 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 602
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+GQ+ P
Sbjct: 603 QLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPA 662
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 663 HTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 722
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A YAE+E
Sbjct: 723 TTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 782
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P + T
Sbjct: 783 VMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQI-QST 841
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 842 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDI 901
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 902 MTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 961
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 962 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1021
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1022 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1080
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1081 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1129
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1130 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1189
Query: 1121 RKNGP 1125
R N P
Sbjct: 1190 RGNIP 1194
|
|
| ZFIN|ZDB-GENE-060526-74 acaca "acetyl-Coenzyme A carboxylase alpha" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2264 (802.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 482/1145 (42%), Positives = 702/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
R +M+GL G + ++ ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 76 RPSMSGLHLVKQGRDRRRIDLQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR WAYE F E+AI V M TPED++ NAE+I++AD +V VPGGTNNNNYANV+LI++
Sbjct: 136 SIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGTNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLHKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIP-----PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSG+ + + + ++ +P ++Y Q CV+ E + + + VG+P M+KAS G
Sbjct: 256 PTLPWSGTGLTVEWTENDQKKGIINVPTELYEQGCVHDVEAGLKAAEQVGFPVMVKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+ ++ L++QVQ EVPGSPIF+M++A +RHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNCAEDFPNLYRQVQAEVPGSPIFVMQLAKHARHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P T+A + + +E+ A +LAK V YV A TVEYLYS ++ +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPATIATSDVFEDMEKCAVKLAKMVGYVSAGTVEYLYSQDSS-FY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL +I +IR YGM+ G D+
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLHRIKDIRVLYGMQPWG--DS---- 488
Query: 421 SVIATPFDFDQAESTR-PKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DFD +T P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 -----PIDFDGLSTTPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N I TGWLD I+ +++AERP L VV GAL+ A + VS+++ LE+GQ+ P
Sbjct: 604 QHNSIDTGWLDRLISEKMQAERPDTMLGVVSGALHVADVNFRNSVSNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG+KY + + R+ P SY + MN S +E ++H L DGG+L+ DG+S+
Sbjct: 664 HTLLNTVDVELIYEGTKYVLKVTRQSPNSYVVIMNCSSVEVDVHRLSDGGMLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R++I +TC+ + ++DPS L + + KL++Y V DG H+ A YAE+E
Sbjct: 724 TTYMKEEVDRYRIIIGNKTCVFEKENDPSVLRSPSAGKLIQYTVEDGGHVFAGQCYAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G ++ G +I +L LDDPS V++AE + G+ P +
Sbjct: 784 VMKMVMTLTASESGCIHYVKRAGAVLEPGCIIGKLQLDDPSRVQQAELYTGTLPSI-QSV 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ ++L I+ GY ++E V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRVFHSTLGHLVHIMNGYCLPEPFFSAKLKEWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P ++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPAVEKAIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + LR + K D+
Sbjct: 963 MNTQSIVQLVQKYRSGIRGHMKAVVMDLLRQYLRVEVQFQHGHYDKCVFALREENKVDMA 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLI----RFSALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1023 NVLNYIFSHAQVTKKNCLVTMLIDQLCGRDPTL-TDELMAILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q I ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCIVEFQFMLPTSHPN 1190
Query: 1121 RKNGP 1125
R N P
Sbjct: 1191 RGNIP 1195
|
|
| RGD|621248 Acaca "acetyl-CoA carboxylase alpha" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2258 (799.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 484/1141 (42%), Positives = 698/1141 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 75 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 134
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 135 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGANNNNYANVELILD 194
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 195 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 254
Query: 186 PTLPWSGSHVKIPPESC-----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ + ++ +P D+Y + V ++ + + + VGYP MIKAS G
Sbjct: 255 PTLPWSGSGLRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEG 314
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 315 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 374
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 375 RDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 433
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G DA
Sbjct: 434 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWG--DA---- 487
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 488 -----PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 542
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 543 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 602
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A + +S+++ LE+GQ+ P
Sbjct: 603 QLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVNLRNSISNFLHSLERGQVLPA 662
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L EG KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 663 HTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 722
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS + + + KL++Y+V DG H+ A YAE+E
Sbjct: 723 TTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 782
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P + T
Sbjct: 783 VMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQI-QST 841
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 842 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPLLELQDI 901
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 902 MTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 961
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 962 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1021
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1022 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1080
Query: 1007 SQLLEQTKLSELRSSIARSLSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDAL 1066
Q+L S L S R +F ++D + I E ++ L+ + ++ D L
Sbjct: 1081 RQVLIA---SHLPSYDVRHNQVESIFLS---AIDMYGHQFCI-ENLQKLILSETSIFDVL 1133
Query: 1067 VGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIERKNG 1124
F HS+ ++ +E YVRR Y Y + Q + ++F+ H R N
Sbjct: 1134 PNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPNRGNI 1193
Query: 1125 P 1125
P
Sbjct: 1194 P 1194
|
|
| UNIPROTKB|E2RL01 ACACA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2258 (799.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 488/1145 (42%), Positives = 702/1145 (61%)
Query: 7 RSAMAGLGR-GNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
RS+M+GL G + + ++ EF GG K I +LIANNG+AAVK +R
Sbjct: 76 RSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMR 135
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR W+YE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LI++
Sbjct: 136 SIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILD 195
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L GI F+GPP+ +M ALGDKI SS++AQ A +
Sbjct: 196 IAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGI 255
Query: 186 PTLPWSGSHVKIP-PESC----LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG 240
PTLPWSGS +++ E+ ++ +P ++Y + V ++ + + + VGYP MIKAS G
Sbjct: 256 PTLPWSGSGLRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEG 315
Query: 241 GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS 300
GGGKGIRKV+N D+ LF+QVQ EVPGSPIF+M++A QSRHLEVQ+L DQYGN +L
Sbjct: 316 GGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFG 375
Query: 301 RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360
RDCSVQRRHQKIIEE P +A + +EQ A +LAK V YV A TVEYLYS + G +Y
Sbjct: 376 RDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQD-GSFY 434
Query: 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420
FLELNPRLQVEHP TE +A++NLPAAQ+ + MGIPL++I +IR YG+ G DA
Sbjct: 435 FLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWG--DA---- 488
Query: 421 SVIATPFDFDQ-AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479
P DF+ A P+GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV
Sbjct: 489 -----PIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSV 543
Query: 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDY 539
+ GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I LL +
Sbjct: 544 AAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESF 603
Query: 540 RENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPK 599
+ N+I TGWLD IA +V+AERP L VV GAL+ A S +S+++ LE+GQ+ P
Sbjct: 604 QLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPA 663
Query: 600 HISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSH 659
H L V L G KY + + R+ P SY + MN S +E ++H L DGGLL+ DG+S+
Sbjct: 664 HTLLNTVDVELIYGGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSY 723
Query: 660 VVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719
Y +EE R+ I +TC+ + ++DPS L + + KL++Y+V DG H+ A YAE+E
Sbjct: 724 TTYMKEEVDRYRITIGNKTCVFEKENDPSVLRSPSAGKLIQYIVEDGGHVFAGQCYAEIE 783
Query: 720 VMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPT 779
VMKM M L + SG + + G A+ G +IA++ LD+PS V++AE GS P + T
Sbjct: 784 VMKMVMTLTAAESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPRI-QST 842
Query: 780 AISG-KVHQRCAASLNAARMILAGY-------EHNIEEVVQNLLNCLDSPELPLLQWQEC 831
A+ G K+H+ L+ ++ GY +++ V+ L+ L P LPLL+ Q+
Sbjct: 843 ALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDI 902
Query: 832 MAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADK-ERGSQE 890
M +S R+P +++ ++ + ++ +S FP++ + +L++H + K ER
Sbjct: 903 MTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFF 962
Query: 891 RLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLL 950
+ ++ LV+ Y G H + +V L +YL VE F + + LR + K D+
Sbjct: 963 MNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMN 1022
Query: 951 KVVDIVLSHQGVKRKNKLILRLMEQLVYPNPAAYRDKLIRF----SALNHTNYSELALKA 1006
V++ + SH V +KN L+ L++QL +P D+L+ + L+ T +++AL+A
Sbjct: 1023 TVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTL-TDELLNILTELTQLSKTTNAKVALRA 1081
Query: 1007 SQLLEQTKLS--ELRSSIARS--LSELEMFTEDGESMDTPKRKSAIDERMEDLVSAPLAV 1062
Q+L + L ELR + S LS ++M+ G I E ++ L+ + ++
Sbjct: 1082 RQVLIASHLPSYELRHNQVESIFLSAIDMY---GHQF-------CI-ENLQKLILSETSI 1130
Query: 1063 EDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFL--EEHIE 1120
D L F HS+ ++ +E YVRR Y Y + Q + ++F+ H
Sbjct: 1131 FDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPN 1190
Query: 1121 RKNGP 1125
R N P
Sbjct: 1191 RGNIP 1195
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5SWU9 | ACACA_MOUSE | 6, ., 3, ., 4, ., 1, 4 | 0.4013 | 0.9364 | 0.9053 | yes | no |
| Q13085 | ACACA_HUMAN | 6, ., 3, ., 4, ., 1, 4 | 0.4009 | 0.9364 | 0.9049 | yes | no |
| Q9TTS3 | ACACA_BOVIN | 6, ., 3, ., 4, ., 1, 4 | 0.4009 | 0.9364 | 0.9049 | yes | no |
| Q8S6N5 | ACC1_ORYSJ | 6, ., 3, ., 4, ., 1, 4 | 0.7481 | 0.9933 | 0.9933 | yes | no |
| F4I1L3 | ACC2_ARATH | 6, ., 3, ., 4, ., 1, 4 | 0.7934 | 0.9951 | 0.9579 | no | no |
| P78820 | ACAC_SCHPO | 6, ., 3, ., 4, ., 1, 4 | 0.4018 | 0.9453 | 0.9399 | yes | no |
| Q00955 | ACAC_YEAST | 6, ., 3, ., 4, ., 1, 4 | 0.4051 | 0.9373 | 0.9516 | yes | no |
| B9FK36 | ACC2_ORYSJ | 6, ., 3, ., 4, ., 1, 4 | 0.6939 | 0.9827 | 0.9574 | yes | no |
| P11497 | ACACA_RAT | 6, ., 3, ., 4, ., 1, 4 | 0.3992 | 0.9364 | 0.9053 | yes | no |
| Q38970 | ACC1_ARATH | 6, ., 3, ., 4, ., 1, 4 | 0.8165 | 0.9911 | 0.9968 | yes | no |
| P11029 | ACAC_CHICK | 6, ., 3, ., 4, ., 1, 4 | 0.4017 | 0.9382 | 0.9152 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.4 | 0.921 |
| 4th Layer | 6.4.1.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.4.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2267 | |||
| pfam08326 | 707 | pfam08326, ACC_central, Acetyl-CoA carboxylase, ce | 0.0 | |
| pfam01039 | 487 | pfam01039, Carboxyl_trans, Carboxyl transferase do | 1e-178 | |
| COG0439 | 449 | COG0439, AccC, Biotin carboxylase [Lipid metabolis | 1e-120 | |
| COG4770 | 645 | COG4770, COG4770, Acetyl/propionyl-CoA carboxylase | 6e-95 | |
| COG4799 | 526 | COG4799, COG4799, Acetyl-CoA carboxylase, carboxyl | 3e-94 | |
| PRK08591 | 451 | PRK08591, PRK08591, acetyl-CoA carboxylase biotin | 2e-90 | |
| PRK06111 | 450 | PRK06111, PRK06111, acetyl-CoA carboxylase biotin | 4e-88 | |
| PRK05586 | 447 | PRK05586, PRK05586, biotin carboxylase; Validated | 7e-87 | |
| PRK12999 | 1146 | PRK12999, PRK12999, pyruvate carboxylase; Reviewed | 1e-85 | |
| PRK08654 | 499 | PRK08654, PRK08654, pyruvate carboxylase subunit A | 2e-85 | |
| TIGR00514 | 449 | TIGR00514, accC, acetyl-CoA carboxylase, biotin ca | 5e-85 | |
| PRK12833 | 467 | PRK12833, PRK12833, acetyl-CoA carboxylase biotin | 8e-80 | |
| TIGR02712 | 1201 | TIGR02712, urea_carbox, urea carboxylase | 4e-79 | |
| COG1038 | 1149 | COG1038, PycA, Pyruvate carboxylase [Energy produc | 9e-78 | |
| PRK08462 | 445 | PRK08462, PRK08462, biotin carboxylase; Validated | 8e-77 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 1e-74 | |
| PRK07178 | 472 | PRK07178, PRK07178, pyruvate carboxylase subunit A | 5e-70 | |
| PRK08463 | 478 | PRK08463, PRK08463, acetyl-CoA carboxylase subunit | 2e-63 | |
| pfam02786 | 211 | pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha | 2e-50 | |
| pfam00289 | 108 | pfam00289, CPSase_L_chain, Carbamoyl-phosphate syn | 5e-31 | |
| pfam02785 | 107 | pfam02785, Biotin_carb_C, Biotin carboxylase C-ter | 2e-29 | |
| smart00878 | 107 | smart00878, Biotin_carb_C, Biotin carboxylase C-te | 8e-27 | |
| cd06850 | 67 | cd06850, biotinyl_domain, The biotinyl-domain or b | 1e-12 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 2e-12 | |
| PLN02735 | 1102 | PLN02735, PLN02735, carbamoyl-phosphate synthase | 6e-11 | |
| TIGR01117 | 512 | TIGR01117, mmdA, methylmalonyl-CoA decarboxylase a | 1e-10 | |
| pfam13535 | 183 | pfam13535, ATP-grasp_4, ATP-grasp domain | 1e-10 | |
| COG0458 | 400 | COG0458, CarB, Carbamoylphosphate synthase large s | 2e-10 | |
| pfam00364 | 73 | pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | 3e-10 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 9e-09 | |
| COG0511 | 140 | COG0511, AccB, Biotin carboxyl carrier protein [Li | 1e-08 | |
| PRK12767 | 326 | PRK12767, PRK12767, carbamoyl phosphate synthase-l | 1e-08 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 1e-06 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 7e-06 | |
| PRK05294 | 1066 | PRK05294, carB, carbamoyl phosphate synthase large | 3e-05 | |
| cd06849 | 74 | cd06849, lipoyl_domain, Lipoyl domain of the dihyd | 1e-04 | |
| pfam02655 | 159 | pfam02655, ATP-grasp_3, ATP-grasp domain | 2e-04 | |
| pfam02222 | 171 | pfam02222, ATP-grasp, ATP-grasp domain | 4e-04 | |
| PLN02820 | 569 | PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxyla | 4e-04 | |
| COG1181 | 317 | COG1181, DdlA, D-alanine-D-alanine ligase and rela | 7e-04 | |
| TIGR01205 | 315 | TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l | 0.002 | |
| PRK05889 | 71 | PRK05889, PRK05889, putative acetyl-CoA carboxylas | 0.002 | |
| COG2232 | 389 | COG2232, COG2232, Predicted ATP-dependent carbolig | 0.002 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 0.003 | |
| COG0508 | 404 | COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena | 0.004 |
| >gnl|CDD|219797 pfam08326, ACC_central, Acetyl-CoA carboxylase, central region | Back alignment and domain information |
|---|
Score = 764 bits (1974), Expect = 0.0
Identities = 280/771 (36%), Positives = 397/771 (51%), Gaps = 91/771 (11%)
Query: 755 DLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGY-EHNIEEVVQN 813
LDDPS V+KAEPF G P +GPP K HQR A LNA R ILAGY E ++ +Q
Sbjct: 1 TLDDPSKVKKAEPFTGELPRMGPPVIEGNKPHQRFRALLNALRNILAGYNEVDMNSTLQE 60
Query: 814 LLNCLDSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGV 873
L+ L PELP L+WQE M+ L++RLP L+ ELES + +E FPAK LR +
Sbjct: 61 LIEVLRDPELPYLEWQEQMSALASRLPPKLEEELESLVERYESR----IASFPAKQLRKL 116
Query: 874 LEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEELFSDQI 933
+E +L R ERL+ PL+SL + YEGG +SH +V+SL EEYLSVEELFS+
Sbjct: 117 IEKYLALDP---RELLERLVAPLVSLAERYEGGLKSHEHNVVKSLLEEYLSVEELFSNGR 173
Query: 934 QADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYP-----NPAAYRDKL 988
+ DVI +LR + K DL KVVDIVLSH VK KNKL+L L++QLVYP PA+ RD L
Sbjct: 174 EEDVILKLRDENKDDLSKVVDIVLSHSRVKAKNKLVLALLDQLVYPLLPSTVPASLRDAL 233
Query: 989 IRFSALNHTNYSELALKASQLLEQTKLSELR---SSIARSLSELEMFTEDGESMDTPKRK 1045
R S+LN Y+++ALKA ++L Q L L+ + + L TE K +
Sbjct: 234 SRLSSLNSRAYAKVALKAREILIQCSLPSLKERKAQLEAILR--SSVTESSYGESFSKHR 291
Query: 1046 SAIDERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHR 1105
E ++DLV + AV D L FDHSD + +E YVRR Y+ Y +K +Q+H
Sbjct: 292 EPSLESLKDLVDSSYAVFDVLPSFFDHSDPWVSLAALEVYVRRAYRAYSIKE---LQYHE 348
Query: 1106 CG---LIASWEFL--EEHIERKNGPEDQTPEQPLV-------EKHSERKWGAMVIIKSLQ 1153
IASWEF H R NG ++ EK SE + G MV + L+
Sbjct: 349 SDGGPPIASWEFQLPSSHSSRLNGIPSESTRAASDSDLSAVVEKRSEERTGVMVALDDLE 408
Query: 1154 SFPDILSAALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDEDQAQE 1213
+ L+AAL S GS ++ N++++A + D+ +E
Sbjct: 409 DLEETLAAALERLPDFTGAE-SAGSGSSSEPINVLNVA----------ISDTRGFGSDEE 457
Query: 1214 RINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRH 1273
I +L ILKE + L +AGV ++ I+ RDEGR P +F S E YEE+P++RH
Sbjct: 458 LIARLEAILKENK--EELRAAGVRRVTFIVGRDEGRYPKYFTFRASDE---YEEDPIIRH 512
Query: 1274 LEPPLSIYLELDKLKGYDNIQYTLSRDRQWHLYTVVDK---PLPIRRMFLRTLVRQPTSN 1330
+EP L+ LEL +L +D I+ +R+R H+Y V K +R FLR ++R
Sbjct: 513 IEPALAFQLELGRLSNFD-IKPLPTRNRNIHVYEAVGKEAQSPADKRFFLRAIIRPGDLR 571
Query: 1331 DGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVK-SDHAQMYLCIL 1389
D S D R L+ ++ELE+ N++VK +D ++L +
Sbjct: 572 DDISSAEYLDSEAE--------------RLLLDILDELEVADSNSTVKRTDLNHIFLNFV 617
Query: 1390 REQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKLWMA 1449
E + + +EE G R+ +L V + EV++ +
Sbjct: 618 PELNL--------------------DPSSVEEALAGFLERFGRRLWRLRVTQAEVRIRLR 657
Query: 1450 -YSGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVR-GLLH 1498
S A RV++TNV+G+ V +YRE++D K +++HS+ + G LH
Sbjct: 658 DPSTGAPVPLRVIITNVSGYVVKVELYREVKDP-KGKLIFHSIGSKQGSLH 707
|
The region featured in this family is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (pfam01039). This enzyme (EC:6.4.1.2) is involved in the synthesis of long-chain fatty acids, as it catalyzes the rate-limiting step in this process. Length = 707 |
| >gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain | Back alignment and domain information |
|---|
Score = 551 bits (1423), Expect = e-178
Identities = 191/558 (34%), Positives = 248/558 (44%), Gaps = 81/558 (14%)
Query: 1599 PEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAE 1658
PE P G+ D+ GSFG ED FF VT+ K+LP + SGA G A
Sbjct: 1 PEHPRGKLTARERIDLLLDPGSFGELEDLFFHRVTEFGR-KRLPGDGVVTGSGAIDGRAV 59
Query: 1659 EVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKE 1718
EV A W L P GF +T I + GE ++ G
Sbjct: 60 EVVAQDFTVWGGSLGPAHGFK---ITRAMELAI-----------KEGEPLIGINDSGGAR 105
Query: 1719 DGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIIL 1777
GVENL G G I GA SRA ++ VTG G GAY LG I P+ L
Sbjct: 106 IQEGVENLRGYGLIFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIMVKGTSPMFL 165
Query: 1778 TGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGG 1837
TG + K+ G E +S G + M +GV HLT SDD + ++ I K LSY+P
Sbjct: 166 TGPDVVKKVTG-EEVTSEELGGADQHMTKSGVAHLTASDDEDALALIRKLLSYLPKASNN 224
Query: 1838 --ALPIISPLDPPDRP----VEYLPENS---CDPRAAICGFLDNNGKWIGGIFDKDSFVE 1888
+PI+ DPPDR V +P++ D R I G I D+ SF E
Sbjct: 225 MEPVPIVPTGDPPDRDVEELVSIVPDDPKRPYDVREVIAG-----------IVDEGSFFE 273
Query: 1889 TLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDS 1948
T G+A+TVVTG ARLGGIPVG+VA + + AG V F DS
Sbjct: 274 TKAGYAKTVVTGFARLGGIPVGVVANQPR--------------------VLAG-VLFIDS 312
Query: 1949 ATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYI 2008
A K A+ + D + +PL IL + GF G + GIL+ G+ ++ L P I
Sbjct: 313 ADKAARFIRDCDAFNIPLVILVDVPGFLPGTDQEYGGILKHGAKLLYALAEATVPKITVI 372
Query: 2009 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2068
P + GGA+VV+DS+IN ++A TA+ V+ PEG +EIKFR + M
Sbjct: 373 PR--KAYGGAYVVMDSKINGADA-VFAWPTARIAVMGPEGAVEIKFRKELAAATMR---- 425
Query: 2069 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2128
DL A Q+I E+QL P Y A FA+L R AK
Sbjct: 426 -YKDLEAL---------------RAQKIAEYEEQLSPPYVAAARGFADLVIDPGRTRAKL 469
Query: 2129 VIKEVVDWDKSRSFFCRR 2146
VI + W K R F R+
Sbjct: 470 VIALALLWHKPRFFPWRK 487
|
All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule. Length = 487 |
| >gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 389 bits (1001), Expect = e-120
Identities = 172/510 (33%), Positives = 255/510 (50%), Gaps = 70/510 (13%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G AV+ IR+ R ET VA+ + D +A H+ +AD+ V +
Sbjct: 5 ILIANRGEIAVRIIRACRELGIET---------VAVYSEADA--DALHVALADEAVCIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+ ++Y N+ I+ AE T DA+ PG+G SE + + G+ F+GP A ++ +
Sbjct: 54 APSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
GDKI + + A VP +P S V EEA+A + +G
Sbjct: 114 GDKITARRLMAKAGVPVVPGS---------------------DGAVADNEEALAIAEEIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP ++KA+ GGGG+G+R V N++E+ A F+ +GE G+P +++ K RH+EVQ
Sbjct: 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D +GNV L RDCS+QRRHQK+IEE P + E +K+ +AA R AK + Y GA
Sbjct: 213 VLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
TVE+LY GE+YF+E+N RLQVEHPVTE + I+L Q+ + G
Sbjct: 273 TVEFLYDS-NGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAG------------- 318
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
P Q E + +GH + R+ +EDP F P+ GK+ +
Sbjct: 319 ------------------EPLSLKQ-EDIKFRGHAIECRINAEDPLGNFLPSPGKITRYA 359
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
P V V G + + DS G V G +R AIA M L E+ I G I+TN
Sbjct: 360 PPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDG-IKTN 418
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSRIAMR 556
+ ++L D+ + T +L++ +
Sbjct: 419 IPLLQEILRDPDFLAGDLDTHFLETHLEPL 448
|
Length = 449 |
| >gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = 6e-95
Identities = 204/721 (28%), Positives = 309/721 (42%), Gaps = 91/721 (12%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
ILIAN G A + IR+ R T VA+ + D +A H+R+AD+ V
Sbjct: 2 FSKILIANRGEIACRVIRTARDLGIRT---------VAVYSDADA--DALHVRMADEAVH 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ +Y ++ I++ A T A+ PG+G SE + + G++F+GP A ++
Sbjct: 51 IGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
A+GDKI + +A A VPT+P G H I + LV I +++
Sbjct: 111 RAMGDKIAAKKLAAEAGVPTVP--GYHGPIQDAAELVAIAEEI----------------- 151
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRHL 283
GYP +IKAS GGGGKG+R V +E + + E S +FI K + RH+
Sbjct: 152 --GYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPL---ETVKKLEQAARRLAKCV 340
E+Q+ DQ+GNV L RDCS+QRRHQK+IEE P AP ET + + +AA AK V
Sbjct: 210 EIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAP---APFLTEETREAMGEAAVAAAKAV 266
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
YVGA TVE++ G +YFLE+N RLQVEHPVTE I I+L Q+ V G L
Sbjct: 267 GYVGAGTVEFIVD-ADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEKL---- 321
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
F Q + GH + R+ +EDP GF P++G
Sbjct: 322 ---------------------------PFTQDDIPL-NGHAIEARIYAEDPARGFLPSTG 353
Query: 461 KVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520
++ + P V V+ G I F D + G R A+ + L E ++
Sbjct: 354 RLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVE 413
Query: 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIA-MRVRAERPPWYLSVVGGALYKASAS 579
G I TN+ + L+ +R + TG++ I + A L+ A
Sbjct: 414 G-IATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAPAPASADALAAAALLAQPALER 472
Query: 580 SA--AMVSDYIGY-LEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTL-RMNE 635
A + G+ + + + +V + + + R L
Sbjct: 473 RAESDPWASLSGWVVTGDAAELRVLIDGEERVEVRLPAREGRERFYVDSDWDPELASAAL 532
Query: 636 SEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETP 695
S + + R GG L G AE + G + +L+A P
Sbjct: 533 SGRKRAVRVARAGGGLTLFWGGGSPRIAELDKLGGAKVAAA---------SSGELLAPMP 583
Query: 696 CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARL 754
++ V +G + A +E MKM L +P GV+ + +AEG + G ++
Sbjct: 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEF 643
Query: 755 D 755
+
Sbjct: 644 E 644
|
Length = 645 |
| >gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 315 bits (810), Expect = 3e-94
Identities = 137/563 (24%), Positives = 213/563 (37%), Gaps = 55/563 (9%)
Query: 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLI 1644
N GMVA M E R I + G + V L +
Sbjct: 2 NAFGMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGSF--L 59
Query: 1645 YLAANSGAR-IGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG-----SSVIAH 1698
L A +G R G A E+ + +N + F + +G + A
Sbjct: 60 ELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQ 119
Query: 1699 EMKLESGETR-WVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIG 1757
E+ +E+G + DS G GV +L G G I +RA ++ V G G G
Sbjct: 120 ELAIENGLPVIGLNDSG-GARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGG 178
Query: 1758 AYLARLGMRCIQ-RLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN-GVVHLTVS 1815
AY L I R + LTG + + G EV + +LGG ++ A GV L
Sbjct: 179 AYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAE--ELGGAQVHARKSGVADLLAE 236
Query: 1816 DDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNNG 1874
DD + I + + LSY+P + P++ D PDR E L DPR +
Sbjct: 237 DDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPY------DV 290
Query: 1875 KW-IGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSH 1933
+ I + D F+E G+A+ +VTG AR+ G PVGI+A + +
Sbjct: 291 REVIARLVDDGEFLEFKAGYAKNIVTGFARIDGRPVGIIANQPR---------------- 334
Query: 1934 ERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTI 1993
G V DSA K A+ + + +PL L + GF G + GI++ G+ +
Sbjct: 335 -----HLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKL 389
Query: 1994 VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIK 2053
+ + P I + GGA+ V+ + YA TA+ V+ PEG + I
Sbjct: 390 LYAVAEATVPKITVI--TRKAYGGAYYVMGGKALGPD-FNYAWPTAEIAVMGPEGAVSIL 446
Query: 2054 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATK 2113
+R + L R +++ L +L + A E+ + A
Sbjct: 447 YRKE--LAAAERPEEREALLRKQLIAEYEEQ-------FSNPYYAAERGYIDAVIDPADT 497
Query: 2114 FAELHDTSLRMAAKGVIKEVVDW 2136
A L +A K V++ +
Sbjct: 498 RAVLGRALSALANKPVVETPLKK 520
|
Length = 526 |
| >gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 2e-90
Identities = 162/516 (31%), Positives = 254/516 (49%), Gaps = 70/516 (13%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
ILIAN G A++ IR+ + E I VA+ + D +A H+++AD+ V
Sbjct: 2 FDKILIANRGEIALRIIRACK---------ELGIKTVAVHSTADR--DALHVQLADEAVC 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ + +Y N+ I+ AE+T DA+ PG+G SE + + G F+GP A ++
Sbjct: 51 IGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK+ + + A VP +P GS V EEA+A +
Sbjct: 111 RLMGDKVTAKATMKKAGVPVVP--GS-------------------DGPVDDEEEALAIAK 149
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP +IKA+ GGGG+G+R V + E+ F + E G+P +++ K RH+
Sbjct: 150 EIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q+L D +GN L RDCS+QRRHQK++EE P E +K+ +AA + AK + Y
Sbjct: 210 EIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYR 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
GA T+E+LY + GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 270 GAGTIEFLYE-KNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLS------ 322
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q + +GH + R+ +EDP F P+ GK+
Sbjct: 323 -------------------------IKQEDIVF-RGHAIECRINAEDPAKNFMPSPGKIT 356
Query: 464 ELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
P V +V +G I + DS G + GE+R AIA M L E I G I
Sbjct: 357 RYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDG-I 415
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA 559
+T + + LL+ +++ + +L+ ++A++
Sbjct: 416 KTTIPLHLRLLNDPNFQAGDYNIHYLEKKLALQEEK 451
|
Length = 451 |
| >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = 4e-88
Identities = 163/507 (32%), Positives = 251/507 (49%), Gaps = 79/507 (15%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
+LIAN G AV+ IR+ + T VA+ + D +A H+++AD+ + G
Sbjct: 5 VLIANRGEIAVRIIRTCQKLGIRT---------VAIYSEADR--DALHVKMADEAYLIGG 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+Y N++ I+E+A+ T +A+ PG+G SE + +GI+F+GP A +A +
Sbjct: 54 PRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
G KI + QAA VP +P + L EEAIA + +G
Sbjct: 114 GSKIEARRAMQAAGVPVVP--------GITTNLEDA-------------EEAIAIARQIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP M+KAS GGGG G++ V + E+ F+ + G+ ++I K RH+E+Q
Sbjct: 153 YPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPL---ETVKKLEQAARRLAKCVNYV 343
LL D +GN L R+CSVQRRHQK+IEE P +P ET K + + A + AK + Y
Sbjct: 213 LLADTHGNTVYLWERECSVQRRHQKVIEEAP---SPFLDEETRKAMGERAVQAAKAIGYT 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL-WQIPEI 402
A T+E+L E +YFLE+N RLQVEHPVTE I I+L Q+ + G L + +I
Sbjct: 270 NAGTIEFLVD-EQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSFTQDDI 328
Query: 403 RRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKV 462
+R GH + VR+ +EDP F P+ GK+
Sbjct: 329 KR---------------------------------SGHAIEVRIYAEDPKT-FFPSPGKI 354
Query: 463 QELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522
+L+ V +V++G + F D + A GE+R AI+ + L+E+++ G
Sbjct: 355 TDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG- 413
Query: 523 IRTNVDYTIDLLHASDYRENKIHTGWL 549
I+TN+ + +L ++ TG+L
Sbjct: 414 IKTNIPLLLQVLEDPVFKAGGYTTGFL 440
|
Length = 450 |
| >gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 7e-87
Identities = 158/507 (31%), Positives = 248/507 (48%), Gaps = 70/507 (13%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G AV+ IR+ R E I VA+ + D +A H+++AD+ V +
Sbjct: 5 ILIANRGEIAVRIIRACR---------EMGIETVAVYSEADK--DALHVQLADEAVCIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
++ ++Y N+Q I+ +T A+ PG+G SE + I+F+GP + ++ +
Sbjct: 54 ASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
G+K + I A VP +P S ++ EEA+ + +G
Sbjct: 114 GNKSNAREIMIKAGVPVVPGSEGEIE---------------------NEEEALEIAKEIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRHLEVQ 286
YP M+KAS GGGG+GIR V +++E+ F + E + ++I K +H+E Q
Sbjct: 153 YPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D YGNV L RDCS+QRR+QK++EE P V E KK+ + A + AK VNY A
Sbjct: 213 ILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
T+E+L + G +YF+E+N R+QVEHP+TE I ++L Q+ + G L
Sbjct: 273 TIEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKL---------- 321
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
Q E + GH + R+ +EDP +GF P GK++EL
Sbjct: 322 ---------------------SIKQ-EDIKINGHSIECRINAEDPKNGFMPCPGKIEELY 359
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
V +V SG I + DS G + +G+ R AI M L E I G + TN
Sbjct: 360 IPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEG-VNTN 418
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSRI 553
+D+ +L ++ + T +++ ++
Sbjct: 419 IDFQFIILEDEEFIKGTYDTSFIEKKL 445
|
Length = 447 |
| >gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = 1e-85
Identities = 167/530 (31%), Positives = 261/530 (49%), Gaps = 100/530 (18%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
K I +L+AN G A++ R+ TE I VA+ + ED + H AD+
Sbjct: 3 KKIKKVLVANRGEIAIRIFRAA---------TELGIRTVAIYSEEDK--LSLHRFKADEA 51
Query: 106 VEVPGGTNNNN---YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGP 162
+ G + Y ++ I+ +A+ VDA+ PG+G SE PE + GI F+GP
Sbjct: 52 YLI--GEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGP 109
Query: 163 PATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEA 222
A + LGDK+ + A A VP +P S P DD+ EEA
Sbjct: 110 TAEVLRLLGDKVAARNAAIKAGVPVIPGSE-----GP-------IDDI---------EEA 148
Query: 223 IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVAS 278
+ + +GYP M+KAS GGGG+G+R V +++E+ F++ + E G+ +++ K
Sbjct: 149 LEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE 208
Query: 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP---LETVKKLEQAARR 335
RH+EVQ+L D++GNV L+ RDCSVQRRHQK++E I AP E +++ +AA +
Sbjct: 209 NPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVE---IAPAPGLSEELRERICEAAVK 265
Query: 336 LAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395
LA+ V YV A TVE+L + G +YF+E+NPR+QVEH VTE + I++ +Q+ + G
Sbjct: 266 LARAVGYVNAGTVEFLVDAD-GNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGAT 324
Query: 396 LWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGF 455
L G+ E R +G+ + R+T+EDP + F
Sbjct: 325 L----------HDLEIGIP----------------SQEDIRLRGYAIQCRITTEDPANNF 358
Query: 456 KPTSGKVQELSFKSKPNVWAYFSVKSGGGIH----------EFS---DSQFGHVFAFGES 502
P +G++ AY S G G+ E + DS + A+G +
Sbjct: 359 MPDTGRIT-----------AYRS-PGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRT 406
Query: 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
A+A M L+E +IRG ++TN+ + ++L D+R T ++D
Sbjct: 407 FEQAVARMRRALREFRIRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDET 455
|
Length = 1146 |
| >gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 2e-85
Identities = 169/557 (30%), Positives = 270/557 (48%), Gaps = 80/557 (14%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G A++ +R+ R E I VA+ + D NA ++ AD+ +
Sbjct: 5 ILIANRGEIAIRVMRACR---------ELGIKTVAVYSEADK--NALFVKYADEAYPIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+ +Y N++ I+++A+ DA+ PG+G +E PE GI+F+GP + + A+
Sbjct: 54 APPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
G KI + + + A VP LP + + +D+ EEA + +G
Sbjct: 114 GSKINAKKLMKKAGVPVLPGTEEGI------------EDI---------EEAKEIAEEIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDE-VRAL--FKQVQGEVPGSP-IFIMKVASQSRHLEVQ 286
YP +IKAS GGGG G+R V++++E A+ + + G +FI K + RH+E+Q
Sbjct: 153 YPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D++GNV L R+CS+QRRHQK+IEE P + E +++ +AA + AK +NY A
Sbjct: 213 ILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
TVE+LYS G +YFLE+N RLQVEHP+TE + I++ Q+ + G L
Sbjct: 273 TVEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEEL---------- 320
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
F Q + T +GH + R+ +EDP + F P+ GK++
Sbjct: 321 ---------------------SFKQEDITI-RGHAIECRINAEDPLNDFAPSPGKIKRYR 358
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
P V V G I + DS + +G +R AIA M L E I G ++TN
Sbjct: 359 SPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG-VKTN 417
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSR--IAMRVR------AERPPWYLSVVGGALYKASA 578
+ + ++ ++ +HT +++ I ++ ER K +A
Sbjct: 418 IPFHKAVMENENFVRGNLHTHFIEEETTILEEMKRYALEEEEREKTLSEKFFPGNKKVAA 477
Query: 579 SSAAMVSDYIGYLEKGQ 595
+AA V+ YI +K
Sbjct: 478 IAAA-VNAYISSAKKDN 493
|
Length = 499 |
| >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Score = 286 bits (733), Expect = 5e-85
Identities = 156/509 (30%), Positives = 246/509 (48%), Gaps = 70/509 (13%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G A++ +R+ + E I VA+ + D +A H+ +AD+ V +
Sbjct: 5 ILIANRGEIALRILRACK---------ELGIKTVAVHSTADR--DALHVLLADEAVCIGP 53
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
+ +Y N+ I+ AE+T DA+ PG+G SE + G F+GP A S+ +
Sbjct: 54 APSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLM 113
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
GDK+ + + A VP +P S V EE + + +G
Sbjct: 114 GDKVSAIETMKKAGVPCVPGS---------------------DGLVEDEEENVRIAKRIG 152
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP +IKA+ GGGG+G+R V DE+ + E G+ ++I K RH+E+Q
Sbjct: 153 YPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQ 212
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
+L D+YGN L RDCS+QRRHQK++EE P E +K+ AA + A + Y GA
Sbjct: 213 VLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAG 272
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
TVE+L + GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 273 TVEFLLD-KNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPL---------- 321
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
+ ++ V+ +GH + R+ +EDP F P+ G++
Sbjct: 322 ---------SLKQEDVVV-------------RGHAIECRINAEDPIKTFLPSPGRITRYL 359
Query: 467 FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTN 526
P V V SG + + DS G + +G++R +AIA M L E I G I+T
Sbjct: 360 PPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDG-IKTT 418
Query: 527 VDYTIDLLHASDYRENKIHTGWLDSRIAM 555
+ + +L +++ + +L+ ++ M
Sbjct: 419 IPFHQRILEDENFQHGGTNIHYLEKKLGM 447
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 449 |
| >gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 8e-80
Identities = 162/532 (30%), Positives = 243/532 (45%), Gaps = 71/532 (13%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
I +L+AN G AV+ IR+ R + + +A D ++ R+AD+
Sbjct: 3 SRIRKVLVANRGEIAVRIIRAAR-----------ELGMRTVAACSDADRDSLAARMADEA 51
Query: 106 VEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPAT 165
V + +Y N I+ A DA+ PG+G SE + + G+IF+GP A
Sbjct: 52 VHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQ 111
Query: 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIAS 225
++ +GDK + A+ A VPT+P S D V V + + A+
Sbjct: 112 TIRTMGDKARARRTARRAGVPTVPGS----------------DGV-----VASLDAALEV 150
Query: 226 CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSR 281
+GYP MIKA+ GGGG+GIR H+ ++ A Q E G +++ + +++R
Sbjct: 151 AARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARAR 210
Query: 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341
H+EVQ+L D V L R+CS+QRR QKI+EE P L +A RLA+ V
Sbjct: 211 HIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVG 269
Query: 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPE 401
Y GA T+EYL+ GE+YF+E+N R+QVEHPVTE I I+L + + G PL
Sbjct: 270 YRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPL----- 324
Query: 402 IRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK 461
F Q +G + R+ +EDP F P G+
Sbjct: 325 --------------------------RFAQ-GDIALRGAALECRINAEDPLRDFFPNPGR 357
Query: 462 VQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521
+ L + P V + G + F DS + GE RA A+A L+E++I G
Sbjct: 358 IDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDG 417
Query: 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGAL 573
++T LL +D R + HT +L++ +A RA + VG A
Sbjct: 418 -MKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW-RAALDAAASAAVGEAA 467
|
Length = 467 |
| >gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 4e-79
Identities = 154/508 (30%), Positives = 243/508 (47%), Gaps = 74/508 (14%)
Query: 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVP 109
++LIAN G AV+ IR++R I VA+ + D ++H+ AD+ V +
Sbjct: 3 TVLIANRGEIAVRIIRTLR---------RMGIRSVAVYSDADA--ASQHVLDADEAVCLG 51
Query: 110 GGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAA 169
G +Y ++ I+ A+ T A+ PG+G SE + GI+F+GP +
Sbjct: 52 GAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRK 111
Query: 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV 229
G K + +A+AA VP LP +G L++ + +EA+ + + +
Sbjct: 112 FGLKHTARELAEAAGVPLLPGTG----------LLS------------SLDEALEAAKEI 149
Query: 230 GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQ--GE--VPGSPIFIMKVASQSRHLEV 285
GYP M+K++ GGGG G++K + E+ F+ V+ GE + +F+ + +RH+EV
Sbjct: 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEV 209
Query: 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGA 345
Q+ D G V AL RDCS+QRR+QK++EE P P ET + L AA RL + VNY A
Sbjct: 210 QIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSA 269
Query: 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRF 405
TVE++Y E+YFLE+N RLQVEHPVTE + ++L + + G
Sbjct: 270 GTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELP--------- 320
Query: 406 YGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQEL 465
F S P+G + RV +E+P F+P+ G + ++
Sbjct: 321 --------------------DFA-SLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDV 359
Query: 466 SFKSKPNV--WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
F V W V++G + D + G R AI + L E ++ G I
Sbjct: 360 QFPDDVRVDTW----VETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLDS 551
TN+DY +L + +R ++ T L+S
Sbjct: 415 ETNLDYLRSILSSETFRSAQVSTRTLNS 442
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201 |
| >gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 9e-78
Identities = 160/529 (30%), Positives = 258/529 (48%), Gaps = 89/529 (16%)
Query: 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR 100
SL G+K I +L+AN G A++ R+ E I VA+ + ED + H
Sbjct: 1 SLLGEK-IKKVLVANRGEIAIRVFRA---------ANELGIKTVAIYSEEDR--LSLHRF 48
Query: 101 IADQFVEV-PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIF 159
AD+ + G Y ++ I+ +A+ + DA+ PG+G SE PE + GI F
Sbjct: 49 KADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITF 108
Query: 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTT 219
+GP + LGDK+ + A A VP +P + P + +
Sbjct: 109 IGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD-----GP-------IETI--------- 147
Query: 220 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMK 275
EEA+ + GYP MIKA+ GGGG+G+R V ++ ++ F++ + E + +++ K
Sbjct: 148 EEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEK 207
Query: 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARR 335
+ +H+EVQ+L D +GNV L RDCSVQRRHQK++E P E ++ A +
Sbjct: 208 LVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVK 267
Query: 336 LAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395
LA+ + Y+ A TVE+L E G++YF+E+NPR+QVEH +TE I I++ AQ+ + G
Sbjct: 268 LARNIGYINAGTVEFLVD-EDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGAT 326
Query: 396 LWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGF 455
L T + P Q + R G+ + R+T+EDP++GF
Sbjct: 327 L----------------------HTPELGLP----QQKDIRTHGYAIQCRITTEDPENGF 360
Query: 456 KPTSGKVQELSFKSKPNVWAY-----FSVK-------SGGGIHEFSDSQFGHVFAFGESR 503
P +G++ AY F V+ +G I + DS V +G +
Sbjct: 361 IPDTGRIT-----------AYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTF 409
Query: 504 ALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
AI M+ L+E +IRG ++TN+ + +L+ D+R + T ++D+
Sbjct: 410 EEAIRKMIRALREFRIRG-VKTNIPFLEAVLNHPDFRSGRYTTSFIDTT 457
|
Length = 1149 |
| >gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 8e-77
Identities = 155/510 (30%), Positives = 255/510 (50%), Gaps = 72/510 (14%)
Query: 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQ 104
KK I ILIAN G A++ IR+I+ ++AI + + A + A +++ AD
Sbjct: 1 KKEIKRILIANRGEIALRAIRTIQEMG------KEAIAIYSTADKD-----ALYLKYADA 49
Query: 105 FVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPA 164
+ + G ++ +Y N+ I+ AE+ DA++PG+G SE + S I F+GP
Sbjct: 50 KICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSV 109
Query: 165 TSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIA 224
MA + DK + + + A VP +P S +K + EEA
Sbjct: 110 EVMALMSDKSKAKEVMKRAGVPVIPGSDGALK---------------------SYEEAKK 148
Query: 225 SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQS 280
+ +GYP ++KA+ GGGG+G+R V ++ ++ L+ + E + +++ K +
Sbjct: 149 IAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNP 208
Query: 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV 340
RH+EVQ+L D++GNV + RDCS+QRRHQK+IEE P V +T ++L + A + AK +
Sbjct: 209 RHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAI 268
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
Y GA T E+L ++YF+E+N RLQVEH V+E ++ ++L + + G L
Sbjct: 269 GYEGAGTFEFLLD-SNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEEL---- 323
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
Q ES + KGH + R+T+EDP F P+ G
Sbjct: 324 ----------------------------PSQ-ESIKLKGHAIECRITAEDPKK-FYPSPG 353
Query: 461 KVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520
K+ + NV +G + + DS G + +GE R AIA M LKE ++
Sbjct: 354 KITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVE 413
Query: 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
G I+T + + ++++ +D+ NK T +L+
Sbjct: 414 G-IKTTIPFHLEMMENADFINNKYDTKYLE 442
|
Length = 445 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 1e-74
Identities = 171/518 (33%), Positives = 263/518 (50%), Gaps = 84/518 (16%)
Query: 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD---QFV 106
IL+AN G A++ R+ E I VA+ + ED + H + AD Q
Sbjct: 1 KILVANRGEIAIRVFRA---------ANELGIRTVAIYSEEDKL--SLHRQKADESYQVG 49
Query: 107 EVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166
E P Y ++ I+ +A++ VDA+ PG+G SE E D + GIIF+GP A
Sbjct: 50 EGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEV 109
Query: 167 MAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC 226
M LGDK+ + +A A VP +P + PPE T EE +
Sbjct: 110 MDQLGDKVAARNLAIKAGVPVVPGTDG----PPE-----------------TMEEVLDFA 148
Query: 227 QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRH 282
+GYP +IKASWGGGG+G+R V ++ +V F++ + E + +++ K+ + RH
Sbjct: 149 AAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRH 208
Query: 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342
+EVQLL D++GNV L RDCSVQRRHQK++E P E ++ + A +LAK VNY
Sbjct: 209 IEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNY 268
Query: 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQ--VAVGMGIPLWQIP 400
+ A TVE+L G++YF+E+NPR+QVEH VTE I I++ AQ +A G +P Q+
Sbjct: 269 INAGTVEFLVD-NDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTPQL- 326
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
GV +Q E R G+ + RVT+EDP + F+P +G
Sbjct: 327 -----------GV---------------PNQ-EDIRTNGYAIQCRVTTEDPANNFQPDTG 359
Query: 461 KVQELSFKSKPNVWAYFSVKSGGG-------IHEFSDSQFGHVFAFGESRALAIANMVLG 513
+++ +++S F ++ GG I + DS V A+ + A A M
Sbjct: 360 RIE--AYRSAGG----FGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRA 413
Query: 514 LKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDS 551
L+E +IRG ++TN+ + ++L + + T ++D+
Sbjct: 414 LREFRIRG-VKTNIPFLENVLGHPKFLDGSYDTRFIDT 450
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 5e-70
Identities = 158/539 (29%), Positives = 254/539 (47%), Gaps = 78/539 (14%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
I ILIAN G AV+ +R+ E I VA+ + D +A H++ AD+
Sbjct: 2 IKKILIANRGEIAVRIVRACA---------EMGIRSVAIYSEADR--HALHVKRADEAYS 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G Y N + +V +A T DA+ PG+G SE EL + + +GI F+GP A +
Sbjct: 51 I-GADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK + A VP P S ++ +EA+A +
Sbjct: 110 RRMGDKTEARRAMIKAGVPVTPGSEGNLA---------------------DLDEALAEAE 148
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP M+KA+ GGGG+GIR+ ++ +E+ F +V E GS +F+ K +H+
Sbjct: 149 RIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHI 208
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP---ITVAPLETVKKLEQAARRLAKCV 340
EVQ+L D +GNV L RDCS+QRR+QK+IE P +T + L A R AK V
Sbjct: 209 EVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDL---AVRAAKAV 265
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
Y A TVE+L + GE YF+E+N R+QVEH +TE I I++ Q+ + G+PL
Sbjct: 266 GYENAGTVEFLLDAD-GEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPL---- 320
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
+ Q E + +G + R+ +EDP + F P+ G
Sbjct: 321 ---------------------------SYKQ-EDIQHRGFALQFRINAEDPKNDFLPSFG 352
Query: 461 KVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520
K+ P V ++ +G I + DS + + + A+ L +++++
Sbjct: 353 KITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQ 412
Query: 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM-RVRAERPPWYLSVVGGALYKASA 578
G ++T + Y ++L ++R + +T +++S + +R P L+ A A A
Sbjct: 413 G-VKTTIPYYQEILRNPEFRSGQFNTSFVESHPELTNYSIKRKPEELAAAIAAAIAAHA 470
|
Length = 472 |
| >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 2e-63
Identities = 153/510 (30%), Positives = 240/510 (47%), Gaps = 70/510 (13%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
IH ILIAN G AV+ IR+ R ++ VA+ T D H++IAD+
Sbjct: 2 IHKILIANRGEIAVRVIRACRDLHIKS---------VAIYTEPDR--ECLHVKIADEAYR 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G Y +V+ IVE+A+ DA+ PG+G SE E + GIIF+GP + +
Sbjct: 51 I-GTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+G+K + + + +P +P G+ K+ ES +++ A +
Sbjct: 110 RKMGNKNIARYLMKKNGIPIVP--GTE-KLNSESM-----EEIKIFA------------R 149
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG----SPIFIMKVASQSRHL 283
+GYP ++KAS GGGG+GIR VH ++++ F+ + E +F+ K RH+
Sbjct: 150 KIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E Q+L D YGN+ L RDCS+QRRHQK+IE P K + A AK V Y
Sbjct: 210 EFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYT 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A T+E+L + +YF+E+N R+QVEH VTE I I+L Q+ + G EI
Sbjct: 270 NAGTIEFLLD-DYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG-------EI- 320
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
D +Q++ +P+G + R+T+E+ F P+ GK+
Sbjct: 321 -----------------------LDLEQSD-IKPRGFAIEARITAENVWKNFIPSPGKIT 356
Query: 464 ELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
E P+V + I + DS + S LA+ + LKE I G I
Sbjct: 357 EYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG-I 415
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
RT + + I + ++R T ++++ +
Sbjct: 416 RTTIPFLIAITKTREFRRGYFDTSYIETHM 445
|
Length = 478 |
| >gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-50
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK+ + A VPT+P + V+ T EEA+A+ + +GY
Sbjct: 1 DKVLFKAAMKEAGVPTVPGTAGPVE---------------------TEEEALAAAKEIGY 39
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSP----IFIMKVASQSRHLEVQL 287
P +IKA++GGGG G+ N++E+ LF E P + + + K +H+E Q+
Sbjct: 40 PVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQV 99
Query: 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347
L D +GN + +R+CS QRR QK IE P E + L +AA ++A+ + YVGA T
Sbjct: 100 LRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGT 159
Query: 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
VE+ +GEYYF+E+N RLQVEH + E +L + +G PL
Sbjct: 160 VEFALDPFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPL 208
|
Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Length = 211 |
| >gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-31
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
I +L+AN G AV+ IR++R ET VA+ + D + H+R+AD+
Sbjct: 1 IKKVLVANRGEIAVRIIRALRELGIET---------VAVNSNPDT--VSTHVRLADEAYF 49
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166
+ G + +Y N++ I+++AE DA+ PG+G SE E + GI F+GP +
Sbjct: 50 LGPGPASESYLNIERILDIAEKEGADAIHPGYGFLSENAEFAEACEEAGITFIGPSPEA 108
|
Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. Length = 108 |
| >gnl|CDD|202395 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESR 503
R+ +EDP +GF P+ GK+ F P V V G + + DS + G R
Sbjct: 2 ARIYAEDPANGFLPSPGKITRYRFPGGPGVRVDSGVYEGDEVSPYYDSMIAKLIVHGPDR 61
Query: 504 ALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
AIA + L E +I G ++TN+ + +L D+R ++ TG+L+
Sbjct: 62 EEAIARLRRALAETRIEG-VKTNIPFLRAILEHPDFRAGEVDTGFLE 107
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyzes the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 |
| >gnl|CDD|214878 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-27
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHE--FSDSQFGHVFAFGE 501
R+ +EDP +GF P+ G++ F P V G + DS + +GE
Sbjct: 2 CRINAEDPANGFLPSPGRITRYRFPGGPGV--RVDSGVYEGYEVPPYYDSMIAKLIVWGE 59
Query: 502 SRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
R AIA + L E +IRG ++TN+ + LL D+R + TG+L+
Sbjct: 60 DREEAIARLRRALDEFRIRG-VKTNIPFLRALLRHPDFRAGDVDTGFLE 107
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 |
| >gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-12
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAG 748
+ A P +++ LV +G ++A P A +E MKM + +P +GV+ + + EG ++AG
Sbjct: 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAG 61
Query: 749 ELIARL 754
+L+ +
Sbjct: 62 QLLVVI 67
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-12
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
+ EEA+ +GYP +++ S+ GG+ + V+N++E+R ++ P P+ I K
Sbjct: 690 ATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDK 749
Query: 276 VASQSRHLEVQLLCDQYGNV-----------AALHSRDCSVQRRHQKIIEEGPITVAPLE 324
+ ++V + D V A +HS D + Q + E
Sbjct: 750 YLEDAVEVDVDAVSDG-EEVLIPGIMEHIEEAGVHSGDSTCVLPPQTL---------SAE 799
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384
V +++ R++AK +N G +++ GE Y +E+NPR P + L
Sbjct: 800 IVDRIKDIVRKIAKELNVKGLMNIQFAVK--DGEVYVIEVNPRASRTVPFVSKATGVPLI 857
Query: 385 AAQVAVGMGIPLWQIPEIRRF 405
V +G L ++ +
Sbjct: 858 KLATRVMLGKKLEELGVGKEK 878
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-11
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 218 TTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE-VRALFKQVQGEVPGSPIFIMKV 276
+ +A+A + +GYP +++ S+ GG+ + V++DD+ L V+ + P P+ + K
Sbjct: 725 SEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVD-PERPVLVDKY 783
Query: 277 ASQSRHLEVQLLCDQYGNV-----------AALHSRD--CSVQRRHQKIIEEGPITVAPL 323
S + ++V L D GNV A +HS D CS+ P P
Sbjct: 784 LSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSL-----------PTQTIPS 832
Query: 324 ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
+ + +LAK +N G +Y + GE Y +E NPR
Sbjct: 833 SCLATIRDWTTKLAKRLNVCGLMNCQYAITPS-GEVYIIEANPR 875
|
Length = 1102 |
| >gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-10
Identities = 87/372 (23%), Positives = 148/372 (39%), Gaps = 80/372 (21%)
Query: 1775 IILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAILKWLSYVPP 1833
+ +TG + + G EV + QLGG +GV H DD + I I + LS++P
Sbjct: 188 MFITGPQVIKTVTGEEV--TAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245
Query: 1834 HIGGALPIISPLDPPDRPVE----YLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1889
+ P++ D P R LP+N P + I I D ++E
Sbjct: 246 NNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPY--------DMRDVITAIVDNGDYLEV 297
Query: 1890 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSA 1949
+A ++T AR+ G VGI+A + + + G LD DS+
Sbjct: 298 QPYYAPNIITCFARINGQSVGIIANQPKVM-------AGCLDI--------------DSS 336
Query: 1950 TKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP 2009
K A+ + + +P+ + GF G + GI++ G+ ++ P I
Sbjct: 337 DKIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIIT 396
Query: 2010 MMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2068
A GGA++ + S+ + +D + YA TA+ V+ P G I FR K+
Sbjct: 397 RKA--YGGAYLAMCSKHLGADQV--YAWPTAEIAVMGPAGAANIIFR-KD---------- 441
Query: 2069 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2128
++EAK+ A KQ + Y +FA + AA+G
Sbjct: 442 --------IKEAKDP-------------AATRKQKIAEYR---EEFA----NPYKAAARG 473
Query: 2129 VIKEVVDWDKSR 2140
+ +V++ ++R
Sbjct: 474 YVDDVIEPKQTR 485
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds]. Length = 512 |
| >gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268
V V E+ A+ + +G+P ++K G G G+ +V + E+ A + EV
Sbjct: 18 PVPPFFLVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSAAELEAALAALAAEVED 77
Query: 269 SPIFIMKVASQSR------HLEVQLLCDQYGNVAAL----HSRDCSVQRRHQKIIEEGPI 318
+ +++ + H++ L+ D G + L + + +E G +
Sbjct: 78 TREYLV----EEYIDGDEYHVDG-LVDD--GELVFLGVSRYLGPPPP--DFSEGVELGSV 128
Query: 319 TVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGEYYFLELNPRL 368
+ + L + A R+ K + G +E+ + G LE+NPR
Sbjct: 129 SPGEDPLPEALRELAERVLKALGLRNGVFHLEFFLT-PDGRPVLLEINPRP 178
|
This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183 |
| >gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-10
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
++ EEA +GYP ++K S+G GG G +N++E+ + ++ P + I +
Sbjct: 136 AHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEE 195
Query: 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEG-PITVAPLETVKKLEQAAR 334
+ E +++ D N C+++ + G ITVAP +T+ E
Sbjct: 196 SIIGWKEFEYEVVRDGKDNCIV----VCNMENLDPMGVHTGDSITVAPAQTLTDKEYQML 251
Query: 335 RLAKC-----VNYVGAATVEYLYSMETGEYYFLELNPR 367
R A + G +++ GE Y +E+NPR
Sbjct: 252 RDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPR 289
|
Length = 400 |
| >gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQA 744
+ V E +LV G + A EVE MKM M + +P +GV+ + + EG
Sbjct: 7 MIGESVKEGT---AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63
Query: 745 MQAGELIARL 754
++ G+ +A++
Sbjct: 64 VEVGDPLAKI 73
|
This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-09
Identities = 39/171 (22%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW--GGGGKGIRKVHNDDEVRALFKQVQ 263
I + V ++ EEA+A+ + +GYP +++ ++ GG G GI +N +E++ + ++
Sbjct: 138 IGEPVPESEIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGI--AYNREELKEIAERAL 195
Query: 264 GEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEG-PITVAP 322
P + + + K + + +E +++ D N + C+++ + G I VAP
Sbjct: 196 SASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGVHTGDSIVVAP 251
Query: 323 LETV-----KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368
+T+ + L A+ ++ + + G V++ + ++G YY +E+NPR+
Sbjct: 252 SQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRV 302
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 9/130 (6%)
Query: 628 SYTLRMNESEIEAEIHT--LRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDH 685
+ +++ E E+ T ++D ++ +S A + AA
Sbjct: 15 EFEVKVEEGEVRLSRKTPVVQDVPAPAPIEASSPSAAAAQPAASAPAPAPAAAA------ 68
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ-FKMAEGQA 744
+++ + + + V G + A A +E MKM + +PA GV++ + G
Sbjct: 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP 128
Query: 745 MQAGELIARL 754
++ G+ +A +
Sbjct: 129 VEYGDPLAVI 138
|
Length = 140 |
| >gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 64/287 (22%), Positives = 111/287 (38%), Gaps = 59/287 (20%)
Query: 91 DMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP- 149
D+ A + AD+F VP T+ N Y + ++++ + ++D + P + PELP
Sbjct: 32 DISELAPALYFADKFYVVPKVTDPN-YIDR--LLDICKKEKIDLLIPL----ID-PELPL 83
Query: 150 -----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204
D G+ L + DK + + +PT P+S L
Sbjct: 84 LAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPT-----------PKSYLP 132
Query: 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG 264
+D + A+A ++ +P +K G G+ KV++ +E+ L + V
Sbjct: 133 ESLEDF---------KAALAKGEL-QFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPN 182
Query: 265 EVPGSPIFIMKVASQSRHLE--VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP 322
+ I + E V +LCD G V V R+ ++
Sbjct: 183 ------LIIQEFIEGQ---EYTVDVLCDLNGEVI------SIVPRKRIEVRAGETSKG-- 225
Query: 323 LETVK--KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
TVK +L + A RLA+ + G ++ + GE Y E+NPR
Sbjct: 226 -VTVKDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLFEINPR 269
|
Length = 326 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-06
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 26/162 (16%)
Query: 217 YTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276
EEA A + +GYP +I+ S+ GG+G+ V+++ + A + PI I +
Sbjct: 692 TDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLA--ENASQLYPILIDQF 749
Query: 277 ASQSRHLEVQLLCDQYGNV-----------AALHSRDCSVQRRHQKIIEEGPITVAPLET 325
+ EV + D +V A +HS D I P +++ E
Sbjct: 750 ID-GKEYEVDAISDGE-DVTIPGIIEHIEQAGVHSGD--------SIAVLPPQSLSE-EQ 798
Query: 326 VKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
+K+ A ++AK + + G ++++ + E Y LE+NPR
Sbjct: 799 QEKIRDYAIKIAKKLGFRGIMNIQFV--LANDEIYVLEVNPR 838
|
Length = 1068 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-06
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 30/169 (17%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
V + EEA+A + +G+P +++ ++ GG G N +E+ LFKQ P + +
Sbjct: 149 VTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEE 208
Query: 276 VASQSRHLEVQLLCDQYGNVA-----------ALHSRDCSVQRRHQKIIEEGPITVAPLE 324
+ + +E +++ D+ GN +H+ D I VAP +
Sbjct: 209 SIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGD--------------SIVVAPSQ 254
Query: 325 T-----VKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368
T + L A+ ++ + VG +++ ++ +YY +E+NPR+
Sbjct: 255 TLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRV 303
|
Length = 1068 |
| >gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-05
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 25/164 (15%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
+ EEA+ + +GYP +++ S+ GG+ + V++++E+ ++ P P+ I K
Sbjct: 690 ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDK 749
Query: 276 VASQSRHLEVQLLCD----QYGNV------AALHSRD--CSVQRRHQKIIEEGPITVAPL 323
+ ++V +CD G + A +HS D CS+ P T++
Sbjct: 750 FLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSL----------PPQTLSE- 798
Query: 324 ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
E ++++ + ++LA +N VG V++ E Y +E+NPR
Sbjct: 799 EIIEEIREYTKKLALELNVVGLMNVQFAVK--DDEVYVIEVNPR 840
|
Length = 1066 |
| >gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
T ++ +LV +G ++ AEVE K + + +PA+GVL + + EG + G++IA
Sbjct: 13 TEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIA 72
Query: 753 RL 754
+
Sbjct: 73 VI 74
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74 |
| >gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 224 ASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ--VQGEVPGSPIFIMKVASQSR 281
++K G GG+G+R V N E + +Q + G P+ + ++ +
Sbjct: 24 EEPTEEEKKYIVKPRDGCGGEGVRFVENGREDEEFIENVIIQEFIEGEPLSVSVLSDGEK 83
Query: 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341
L + + Q + + G +T + E ++LE+ A + + +
Sbjct: 84 VLPL-SVNRQL------------IDNAGSGFVYAGNVTPSRTELKEELEELAEEVVEALP 130
Query: 342 ----YVGAATVEYLYSMETGEYYFLELNPRLQ 369
YVG V+ + + G Y +E+NPR+
Sbjct: 131 GLNGYVG---VDLVLT--DGGPYVIEVNPRIT 157
|
No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman). Length = 159 |
| >gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Query: 220 EEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278
EE I + Q +GYP ++KA GG GKG V ++ ++ ++++ G P+ + +
Sbjct: 18 EELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQAWEELGGG----PVIVEEFVP 73
Query: 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK--IIEEGPITVAPLETVKKLEQAA--- 333
+ L V ++ G A Q+ I E +VAP + A
Sbjct: 74 FDKELSVLVVRSVDGETAF-----YPPVETIQEDGICRE---SVAPARVPDSQQAKAQEI 125
Query: 334 -RRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
+++ + VG VE L+ + G+ EL PR
Sbjct: 126 AKKIVDELGGVGIFGVE-LFVLPDGDLLVNELAPR 159
|
This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171 |
| >gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-04
Identities = 70/270 (25%), Positives = 102/270 (37%), Gaps = 55/270 (20%)
Query: 1749 VTGRTVGIGAYLARLGMRC-IQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKI-MAT 1806
V G GAY+ + I + + I L G + G EV S LGG +
Sbjct: 212 VLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEV--SAEDLGGADVHCKV 269
Query: 1807 NGVVHLTVSDDLEGIS---AILKWLSYVPPHIGGALPIISPLDP---PDRPVEYL----- 1855
+GV D+L ++ I+K L ++ G + S P V+ L
Sbjct: 270 SGVSDHFAQDELHALAIGRNIVKNL-HLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVP 328
Query: 1856 --PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVA 1913
+ S D R+ I +D G FD E + + T+VTG AR+ G PVGI+
Sbjct: 329 ADHKQSFDVRSVIARIVD------GSEFD-----EFKKNYGTTLVTGFARIYGQPVGII- 376
Query: 1914 VETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWR 1973
+ G L F +SA K A + + +PL L N
Sbjct: 377 -----------GNNGIL--------------FTESALKGAHFIELCAQRGIPLLFLQNIT 411
Query: 1974 GFSGGQRDLFEGILQAGSTIVENLRTYKQP 2003
GF G R GI +AG+ +V + K P
Sbjct: 412 GFMVGSRSEASGIAKAGAKMVMAVACAKVP 441
|
Length = 569 |
| >gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 39/225 (17%)
Query: 156 GIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQAC 215
GI ++G + A DKI + + +A +P P+ V + D Y
Sbjct: 87 GIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPY-------------VALTRDEYSSVI 133
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE----VRALFKQVQGEVPGSPI 271
V EE +G+P +K + G G V+ + + + FK +
Sbjct: 134 VEEVEEG------LGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDV 181
Query: 272 FIMKVASQSRHLEVQLLCDQYGNVAA-LHSRDCSVQR---RHQKIIEEGPIT---VAPL- 323
+ R +EV +L + Y A L + K + G A L
Sbjct: 182 LREQ-GITGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLT 240
Query: 324 -ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
E +++++ A R K + +G A V++ + GE+ LE+N
Sbjct: 241 DEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTN 285
|
Length = 317 |
| >gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 40/223 (17%)
Query: 156 GIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQAC 215
GI + G + A DK+ + L+ +A +PT + D++ +
Sbjct: 89 GIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-------ASADELECEQV 141
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE----VRALFKQVQGEVPGSPI 271
+ +G+P ++K + G G+ KV +++E + F+ EV
Sbjct: 142 A----------EPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-YDEEV----- 185
Query: 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR----HQKIIEEGPITV--APL-- 323
+++ + R LEV +L + A K ++ V APL
Sbjct: 186 -LVEQFIKGRELEVSILGN---EEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDE 241
Query: 324 ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366
E +K+++ A + K + G A V++ E GE Y E+N
Sbjct: 242 ELEEKIKELALKAYKALGCRGLARVDFFLD-EEGEIYLNEINT 283
|
This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315 |
| >gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAGEL 750
AE +L +V++G I +E MKM +P+L+ +G V + ++ G +QAG+L
Sbjct: 7 AEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDL 66
Query: 751 IA 752
IA
Sbjct: 67 IA 68
|
Length = 71 |
| >gnl|CDD|225141 COG2232, COG2232, Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 218 TTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA 277
+E+ I + ++K G GG + V D+E Q + G P+ + ++
Sbjct: 137 PSEKKIEPLEEGEKTLILKPVSGAGGL-VELVKFDEEDPPPGFIFQEFIEGRPVSVSFIS 195
Query: 278 SQSRHLEV----QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAA 333
+ S L + Q++ G + + +G +T P E V++ E+ A
Sbjct: 196 NGSDALTLAVNDQIIDGLRGEYSQF--------------VYKGNLTPFPYEEVEEAERLA 241
Query: 334 RRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393
L + + VG+ V+++ + Y +E+NPR+Q E + INL + G
Sbjct: 242 EELVEELGLVGSNGVDFV--LNDKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDG 299
Query: 394 IPLWQIPEIRRFY 406
L + P+ R +
Sbjct: 300 -ELPERPKPRGYA 311
|
Length = 389 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.003
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQ 743
+P+ + A P ++ VS G ++ P +E MKM + +P G + + + G+
Sbjct: 1072 GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE 1131
Query: 744 AMQAGELIARLD 755
+ A +L+ L+
Sbjct: 1132 QIDAKDLLLVLE 1143
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ-FKMAEGQAMQAGELIARLD 755
++ +L G + EVE K M + +P +GVL + EG + G +IAR++
Sbjct: 18 TIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77
Query: 756 LDDPSAVRKAEP 767
+ A AE
Sbjct: 78 EEGADAPAAAEA 89
|
Length = 404 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2267 | |||
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 100.0 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 100.0 | |
| PF08326 | 708 | ACC_central: Acetyl-CoA carboxylase, central regio | 100.0 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 100.0 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 100.0 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 100.0 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 100.0 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 100.0 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 100.0 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 100.0 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 100.0 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 100.0 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 100.0 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 100.0 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 100.0 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 100.0 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 100.0 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 100.0 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 100.0 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 100.0 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 100.0 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 100.0 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 99.98 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 99.98 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 99.98 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 99.97 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 99.97 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 99.97 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 99.96 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.96 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 99.96 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 99.96 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 99.96 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.95 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 99.95 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 99.94 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 99.94 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.94 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 99.94 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 99.94 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.94 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 99.94 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 99.93 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 99.93 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 99.93 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 99.93 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 99.93 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 99.92 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 99.92 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.92 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 99.92 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 99.92 | |
| PF02785 | 107 | Biotin_carb_C: Biotin carboxylase C-terminal domai | 99.92 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 99.92 | |
| smart00878 | 107 | Biotin_carb_C Biotin carboxylase C-terminal domain | 99.91 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 99.9 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 99.9 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 99.89 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.89 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 99.89 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 99.89 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 99.87 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.86 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.86 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.85 | |
| KOG0237 | 788 | consensus Glycinamide ribonucleotide synthetase (G | 99.84 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.84 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 99.84 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.83 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.82 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 99.82 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 99.8 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.79 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 99.79 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 99.79 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 99.79 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.77 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 99.75 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 99.73 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 99.66 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.65 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 99.65 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 99.65 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.64 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 99.64 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.61 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 99.61 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 99.61 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 99.61 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 99.6 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 99.6 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 99.59 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 99.58 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.57 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.56 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.55 | |
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.52 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 99.52 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 99.47 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.44 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 99.43 | |
| PRK06748 | 83 | hypothetical protein; Validated | 99.42 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 99.42 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.41 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.37 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 99.36 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.35 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 99.34 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 99.34 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 99.32 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 99.29 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.29 | |
| PRK07051 | 80 | hypothetical protein; Validated | 99.28 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 99.26 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 99.24 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.22 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.21 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 99.21 | |
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.14 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 99.11 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.09 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 99.01 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 98.93 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 98.91 | |
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 98.89 | |
| PTZ00144 | 418 | dihydrolipoamide succinyltransferase; Provisional | 98.89 | |
| PRK05704 | 407 | dihydrolipoamide succinyltransferase; Validated | 98.83 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 98.83 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 98.81 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 98.74 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 98.73 | |
| TIGR01347 | 403 | sucB 2-oxoglutarate dehydrogenase complex dihydrol | 98.69 | |
| COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex | 98.68 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 98.67 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 98.66 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.6 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 98.57 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 98.57 | |
| PLN02528 | 416 | 2-oxoisovalerate dehydrogenase E2 component | 98.48 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 98.46 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 98.44 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 98.41 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.35 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 98.33 | |
| cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl a | 98.29 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 98.19 | |
| PRK11856 | 411 | branched-chain alpha-keto acid dehydrogenase subun | 98.16 | |
| TIGR01349 | 435 | PDHac_trf_mito pyruvate dehydrogenase complex dihy | 98.14 | |
| KOG0559 | 457 | consensus Dihydrolipoamide succinyltransferase (2- | 98.11 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 98.1 | |
| PLN02744 | 539 | dihydrolipoyllysine-residue acetyltransferase comp | 98.05 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 97.96 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 97.84 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 97.83 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 97.79 | |
| KOG0557 | 470 | consensus Dihydrolipoamide acetyltransferase [Ener | 97.69 | |
| PRK13380 | 144 | glycine cleavage system protein H; Provisional | 97.69 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 97.68 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 97.68 | |
| PF03255 | 145 | ACCA: Acetyl co-enzyme A carboxylase carboxyltrans | 97.63 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 97.58 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 97.56 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 97.55 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 97.44 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 97.39 | |
| cd06848 | 96 | GCS_H Glycine cleavage H-protein. Glycine cleavage | 97.37 | |
| TIGR00998 | 334 | 8a0101 efflux pump membrane protein (multidrug res | 97.36 | |
| PRK01202 | 127 | glycine cleavage system protein H; Provisional | 97.32 | |
| PRK09783 | 409 | copper/silver efflux system membrane fusion protei | 97.3 | |
| TIGR03077 | 110 | not_gcvH glycine cleavage protein H-like protein, | 97.26 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 97.25 | |
| PRK10476 | 346 | multidrug resistance protein MdtN; Provisional | 97.23 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 97.21 | |
| TIGR03309 | 256 | matur_yqeB selenium-dependent molybdenum hydroxyla | 97.19 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 97.18 | |
| TIGR01730 | 322 | RND_mfp RND family efflux transporter, MFP subunit | 97.17 | |
| PF03255 | 145 | ACCA: Acetyl co-enzyme A carboxylase carboxyltrans | 97.14 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 97.11 | |
| PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisi | 97.09 | |
| KOG0558 | 474 | consensus Dihydrolipoamide transacylase (alpha-ket | 97.02 | |
| PRK03598 | 331 | putative efflux pump membrane fusion protein; Prov | 96.98 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 96.96 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 96.92 | |
| PRK15136 | 390 | multidrug efflux system protein EmrA; Provisional | 96.9 | |
| PRK00624 | 114 | glycine cleavage system protein H; Provisional | 96.89 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 96.88 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 96.86 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 96.81 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 96.8 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 96.8 | |
| TIGR00527 | 127 | gcvH glycine cleavage system H protein. The genome | 96.79 | |
| PRK15030 | 397 | multidrug efflux system transporter AcrA; Provisio | 96.69 | |
| PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor | 96.64 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 96.56 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 96.45 | |
| PRK11578 | 370 | macrolide transporter subunit MacA; Provisional | 96.43 | |
| PRK12784 | 84 | hypothetical protein; Provisional | 96.39 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 96.38 | |
| PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 96.37 | |
| PRK09859 | 385 | multidrug efflux system protein MdtE; Provisional | 96.35 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 96.32 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 96.16 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 96.16 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 96.13 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 96.05 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 96.04 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 96.0 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 95.96 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 95.88 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 95.78 | |
| PF12700 | 328 | HlyD_2: HlyD family secretion protein; PDB: 3LNN_B | 95.63 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 95.59 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 95.53 | |
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 95.5 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 95.49 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 95.49 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 95.43 | |
| TIGR02971 | 327 | heterocyst_DevB ABC exporter membrane fusion prote | 95.38 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 95.32 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 95.14 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 94.97 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 94.88 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 94.74 | |
| PRK07051 | 80 | hypothetical protein; Validated | 94.72 | |
| PF01597 | 122 | GCV_H: Glycine cleavage H-protein; InterPro: IPR00 | 94.49 | |
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 94.4 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 94.32 | |
| PF11379 | 355 | DUF3182: Protein of unknown function (DUF3182); In | 94.27 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 94.26 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 94.22 | |
| PF13375 | 101 | RnfC_N: RnfC Barrel sandwich hybrid domain | 94.09 | |
| cd06252 | 316 | M14_ASTE_ASPA_like_2 A functionally uncharacterize | 93.92 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 93.88 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 93.79 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 93.78 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 93.66 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.65 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 93.51 | |
| COG3608 | 331 | Predicted deacylase [General function prediction o | 93.51 | |
| COG0509 | 131 | GcvH Glycine cleavage system H protein (lipoate-bi | 93.43 | |
| TIGR02994 | 325 | ectoine_eutE ectoine utilization protein EutE. Mem | 92.98 | |
| cd06253 | 298 | M14_ASTE_ASPA_like_3 A functionally uncharacterize | 92.97 | |
| cd06251 | 287 | M14_ASTE_ASPA_like_1 A functionally uncharacterize | 92.94 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 92.43 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 92.29 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 92.29 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 92.29 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 92.28 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 92.23 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 92.1 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 91.98 | |
| PRK06748 | 83 | hypothetical protein; Validated | 91.93 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 91.87 | |
| cd06254 | 288 | M14_ASTE_ASPA_like_4 A functionally uncharacterize | 91.72 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 91.7 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 91.64 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 91.6 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 91.57 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 90.81 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 90.8 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 90.79 | |
| cd06250 | 359 | M14_PaAOTO_like An uncharacterized subgroup of the | 90.76 | |
| PF13437 | 105 | HlyD_3: HlyD family secretion protein | 90.69 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 90.59 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 90.44 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 90.38 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 90.36 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 90.3 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 90.2 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 90.09 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 89.95 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 89.9 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 89.78 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 89.72 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 89.68 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 89.66 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 89.65 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 89.64 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 89.6 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 89.49 | |
| PLN02921 | 327 | naphthoate synthase | 89.49 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 89.49 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 89.48 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 89.46 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 89.45 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 89.39 | |
| PF06973 | 188 | DUF1297: Domain of unknown function (DUF1297); Int | 89.34 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 89.18 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 89.16 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 89.06 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 88.93 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 88.92 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 88.87 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 88.77 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 88.72 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 88.72 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 88.68 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 88.55 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 88.52 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 88.37 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 88.37 | |
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 88.29 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 88.28 | |
| cd00210 | 124 | PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s | 88.24 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 88.22 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 88.21 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 88.19 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 88.18 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 88.17 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 88.13 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 88.08 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 88.01 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 87.99 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 87.94 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 87.82 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 87.81 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 87.81 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 87.69 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 87.69 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 87.57 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 87.53 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 87.51 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 87.48 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 87.46 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 87.41 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 87.31 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 87.26 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 87.25 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 87.13 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 87.12 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 87.07 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 87.03 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 86.98 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 86.97 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 86.82 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 86.77 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 86.74 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 86.74 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 86.71 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 86.69 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 86.68 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 86.57 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 86.57 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 86.48 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 86.4 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 86.33 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 86.3 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 86.28 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 85.95 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 85.94 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 85.93 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 85.9 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 85.81 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 85.78 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 85.71 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 85.69 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 85.54 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 85.47 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 85.44 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 85.4 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 85.4 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 85.28 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 85.23 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 85.17 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 85.13 | |
| PF13437 | 105 | HlyD_3: HlyD family secretion protein | 84.91 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 84.85 | |
| PF00529 | 305 | HlyD: HlyD family secretion protein the correspond | 84.82 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 84.41 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 84.26 | |
| cd06255 | 293 | M14_ASTE_ASPA_like_5 A functionally uncharacterize | 84.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 83.93 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 83.77 | |
| PRK09439 | 169 | PTS system glucose-specific transporter subunit; P | 83.67 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 83.64 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 83.53 | |
| TIGR01936 | 447 | nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo | 83.49 | |
| TIGR03794 | 421 | NHPM_micro_HlyD NHPM bacteriocin system secretion | 83.45 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 83.24 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 83.12 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 82.95 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 82.84 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 82.75 | |
| TIGR00830 | 121 | PTBA PTS system, glucose subfamily, IIA component. | 82.73 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 82.62 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 82.61 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 82.4 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 82.38 | |
| PRK05352 | 448 | Na(+)-translocating NADH-quinone reductase subunit | 82.33 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 82.27 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 82.21 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 81.92 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 81.83 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 81.6 | |
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 81.47 | |
| PF05896 | 257 | NQRA: Na(+)-translocating NADH-quinone reductase s | 81.21 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 81.2 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 81.16 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 80.82 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 80.48 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 80.04 |
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=4501.47 Aligned_cols=2146 Identities=52% Similarity=0.846 Sum_probs=2040.4
Q ss_pred CCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhh
Q 000092 22 GAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRI 101 (2267)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ 101 (2267)
.+.+...++..+.+.|||+++||+++|+||||||||++|++||||+|+|.|++|++|++|+||+|+||+|+.+|++|+||
T Consensus 28 ~~~~~~~~~~~s~v~efvk~~gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrm 107 (2196)
T KOG0368|consen 28 LGGNSSDDFTVSKVAEFVKRLGGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRM 107 (2196)
T ss_pred ccCCcccccccccHHHHHHHhcCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhh
Confidence 46777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHH
Q 000092 102 ADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181 (2267)
Q Consensus 102 ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq 181 (2267)
||+++.+|+|+|+|||+|+|.|+++|++..+||||+||||+||||++|++|.+.||.|+|||..+|+.+|||+.+.++||
T Consensus 108 ADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQ 187 (2196)
T KOG0368|consen 108 ADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQ 187 (2196)
T ss_pred hhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCCCCCccC---CCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHH
Q 000092 182 AANVPTLPWSGSHVKI---PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 258 (2267)
Q Consensus 182 ~aGVPtpp~~~~~~~~---~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a 258 (2267)
.+||||.||+++|+++ +.+.++++||+|+|.+||+.+++|++++|++||||+|||+++||||||||+|++.+|+...
T Consensus 188 sa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~l 267 (2196)
T KOG0368|consen 188 SAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKAL 267 (2196)
T ss_pred hcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHH
Confidence 9999999999999994 4455789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 000092 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2267)
Q Consensus 259 ~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~ 338 (2267)
|++++.|.||+|||+|+.+.++||+|||+++|+||+++++++||||+||||||||||+|+++.+++++++|+++|+||++
T Consensus 268 f~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak 347 (2196)
T KOG0368|consen 268 FKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAK 347 (2196)
T ss_pred HHHHHhhCCCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccc
Q 000092 339 CVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWR 418 (2267)
Q Consensus 339 aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~ 418 (2267)
.+||+++|||||+|.|++|+|||||+|||||||||+|||++|||||++|||+|||+||++|||||+|||.+|+|
T Consensus 348 ~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~G------ 421 (2196)
T KOG0368|consen 348 LVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTG------ 421 (2196)
T ss_pred hhcceecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEE
Q 000092 419 KTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFA 498 (2267)
Q Consensus 419 ~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via 498 (2267)
+++|+|+ .+..|.|+||||+||||+|||+++|+|++|+|++|+|+|+++||+||+|+.|+.||+|.||||||||+
T Consensus 422 ---dS~idfe--~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYFSV~~~g~iHeFadSQFGHiFa 496 (2196)
T KOG0368|consen 422 ---DSPIDFE--NAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYFSVGNGGGIHEFADSQFGHIFA 496 (2196)
T ss_pred ---CCCCChh--hccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEEEecCCCceeeccccccceeee
Confidence 9999998 47789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHH
Q 000092 499 FGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASA 578 (2267)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 578 (2267)
+|+||++|+++|+.|||+++|||+|+|+++||++||++++|++|+|+|+|||.+|++++++++|+++++++|||+.+++.
T Consensus 497 ~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~kv~~~~p~~~l~VvcgAa~~g~~ 576 (2196)
T KOG0368|consen 497 FGESRQEAIANMVVALKELSIRGDFRTTVEYLIDLLETEDFESNKIDTGWLDKRIAMKVRAERPDIMLAVVCGAAVKGSS 576 (2196)
T ss_pred ecCcHHHHHHHHHHHHHheeeccccCchHHHHHHHHHhhhhhhccCcchhHHHHHHHHhhccCCCcceeeehhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCce
Q 000092 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS 658 (2267)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s 658 (2267)
.....+..|.++|++||+||++.+.+.++++|+++|.+|.++|++.++++|++.+||+.++|.++.++||++++.+||++
T Consensus 577 ~~~~~~~~y~~~LerGQV~p~~~L~~~~~vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks 656 (2196)
T KOG0368|consen 577 TSRTVFEKYEHSLERGQVPPKDFLLNTFDVDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKS 656 (2196)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHhhhcceeEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 659 HVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 659 ~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
|++|++++.+++++.+|+.+|.|++++||++|+||.|||+++|+|++|+||++||+||+||+|||.|+|.|+++|+|+.+
T Consensus 657 ~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i 736 (2196)
T KOG0368|consen 657 YTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI 736 (2196)
T ss_pred EEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCCCCEEEEEecCCCCccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhhc
Q 000092 739 MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCL 818 (2267)
Q Consensus 739 ~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~iL~GYd~~~~~~l~~l~~~L 818 (2267)
++||+.+++|++||.+++|+||+|+++.||+|+||.++.|...|+|+|++|+..++.|.|||+|||+.+++++++|+++|
T Consensus 737 ~~~G~~i~aG~vlakL~lDdpSkv~~a~pf~G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~L 816 (2196)
T KOG0368|consen 737 KQEGDAIEAGSVLAKLTLDDPSKVQHALPFHGSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVL 816 (2196)
T ss_pred cCCCCccCccceeEEeecCChhhhcccCCccccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHH
Q 000092 819 DSPELPLLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMS 898 (2267)
Q Consensus 819 ~dp~LP~~e~~~~ls~Ls~RiP~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 898 (2267)
+||+|||+||++++|+|++|||+.|++.+..++++|+++. .+||+++|.++++.|+++++..+|..++..++||++
T Consensus 817 r~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~----t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~ 892 (2196)
T KOG0368|consen 817 RDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRI----TQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLK 892 (2196)
T ss_pred cCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhc----ccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHH
Confidence 9999999999999999999999999999999999988875 499999999999999999988999999999999999
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHHHhhhcccC--CCcHHHHHHHHHHhchhhHHHHHHHHHhcccccchHHHHHHHHHhh
Q 000092 899 LVKSYEGGRESHARVIVQSLFEEYLSVEELFS--DQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQL 976 (2267)
Q Consensus 899 ~~~~~~~G~~~~~~~~~~~ll~~y~~ve~~f~--~~~~~~~i~~lr~~~k~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~ 976 (2267)
|+++|++|+++|++.++++||++|++||++|+ +..+|+||..||++||+|+.+|+++++||+++.+||+||++||+++
T Consensus 893 l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l 972 (2196)
T KOG0368|consen 893 LVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQL 972 (2196)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999 6689999999999999999999999999999999999999999998
Q ss_pred cCCCC---hhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-hhccccCCCCCCccCccchHHHH
Q 000092 977 VYPNP---AAYRDKLIRFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-EMFTEDGESMDTPKRKSAIDERM 1052 (2267)
Q Consensus 977 ~~~~~---~~~~~~L~~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 1052 (2267)
+...+ ..|+++|.+|++|+++.+++||++|||+|+++ ||++.|++|+++|+ +.+. ++|... +.+|.+.|
T Consensus 973 ~~~s~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~--ps~~~R~n~~e~i~~s~i~-~~g~~~----~~~~~~~l 1045 (2196)
T KOG0368|consen 973 KPPSSKVSDEFRDILRKLTELNHTNTSEVALKARQILIQS--PSYELRHNQIESILKSSIV-MTGYQF----KKPCLEIL 1045 (2196)
T ss_pred cCCCCCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhhhh-cccCcc----cccchhHH
Confidence 77333 46999999999999999999999999999999 99999999999999 5554 455522 24799999
Q ss_pred HHhhcCCchhHHhhhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecceEEEEEEecccccccC-CCCCCCC-
Q 000092 1053 EDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCGLIASWEFLEEHIERKN-GPEDQTP- 1130 (2267)
Q Consensus 1053 ~~l~~s~~~~~d~L~~~f~~~~~~~~~~alevyvrr~Y~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~- 1130 (2267)
++|++|++++||+|+.||+|+|++++.+||||||||+|++|.++++...++....++++|+|.+|+ |.+ +.++...
T Consensus 1046 ~~lidS~~~v~dvL~~fF~H~d~~v~~~alevYv~ray~ay~v~si~~~~~~~~~~v~~~~F~l~~--~~n~~~~~~~~n 1123 (2196)
T KOG0368|consen 1046 KELIDSNLSVFDVLPGFFYHSDPTVSSAALEVYVRRAYIAYVVKSIKHHQGAPSPCVVSWHFSLPS--RKNISLSPSELN 1123 (2196)
T ss_pred HhhccchhhHHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCceEEEEEEeccc--cccCCCCccccc
Confidence 999999999999999999999999999999999999999999993333333345589999999976 211 1111111
Q ss_pred ---CCcccccccccceeEEEEccCcCcHHHHHHHHHhhccc----CCCCccccCCCCcCCCCcEEEEEEecccccccccC
Q 000092 1131 ---EQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRETAH----SRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQ 1203 (2267)
Q Consensus 1131 ---~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 1203 (2267)
.... ..+.+.|.|.|+.+++|+++...+++++++... ...+.. +.+. .+..+|++||.+.. ..
T Consensus 1124 ~~~~v~~-~~s~~~r~G~mv~~~tf~d~~~~~~~~l~~~~~~~~~~~~~~a-~~~~-~s~~~~~~nv~~~~-------t~ 1193 (2196)
T KOG0368|consen 1124 ELSVVDS-GKSSPQRFGTMVAFRTFEDLVRILDEVLDCLKHSPREYPNPEA-DTSL-SSADINNVNVLLQS-------TG 1193 (2196)
T ss_pred chhhhhc-cCCchhhcchhhhHHHHHHHHHHHHHHHHhhccCccccCCccc-cccc-ccchhhheeeeecc-------cC
Confidence 1111 223458999999999999999999999999221 111111 1111 12338888988874 34
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEeccCCccCCCccccccccCCCCcchhhh
Q 000092 1204 DSGDEDQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLE 1283 (2267)
Q Consensus 1204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~p~~ftfr~~~~~~~~~Ed~~~R~~~p~~a~~Le 1283 (2267)
+. +++++..+|.+++++++. .|..++||||||++.+..+++|+||||. ++.|.||+.+||++|+++||||
T Consensus 1194 d~-e~~~~~~~L~~~l~e~~~-----~l~~~~v~rit~~~~~~~~~~pk~~tf~----~~~y~ed~~~rhlepal~~~LE 1263 (2196)
T KOG0368|consen 1194 DL-EDEELVSKLREILQEEER-----SLADHGVRRITFIIGREEGRYPKFYTFN----GDYYNEDRILRHLEPALAFQLE 1263 (2196)
T ss_pred ch-hhhHHHHHHHHHHHHHHH-----HHHhcccceEEEEeeeccccCcceeecc----ccccccccccccCChhHHHHHH
Confidence 44 466899999999999999 8999999999999998878999999994 2689999999999999999999
Q ss_pred hccccCCCCceeeccCCCcceEEEeecCCCCceeEEEEEeecCCCCCCCCcccccccCCccccccccccchHHHHHHHHH
Q 000092 1284 LDKLKGYDNIQYTLSRDRQWHLYTVVDKPLPIRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMA 1363 (2267)
Q Consensus 1284 l~rl~nf~~~~~~p~~~~~~hly~~~~k~~~d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~ld 1363 (2267)
|+||+||+ |+++||.|++||+|.+++|..+|+|||+|++||+++++++.+++ || ++++++|++.++||
T Consensus 1264 L~rl~n~~-i~~~p~~n~~~h~y~~~sk~~pdkrfF~R~ivR~~~~~d~~~~~---E~--------l~se~~r~l~~ald 1331 (2196)
T KOG0368|consen 1264 LDRLSNYN-ITSVPTDNHKIHLYSVTSKVSPDKRFFVRAIVRQGDLNDDKATA---EY--------LQSEANRLLLDALD 1331 (2196)
T ss_pred HhhhhcCC-cccccccCcceEEEeeecccCchHHHHHHHHhhhhccccchhhH---HH--------HHHHHHHHHHHHHH
Confidence 99999998 99999999999999999999999999999999999999999999 88 89999999999999
Q ss_pred HHHHHHhcccccCCCCCccEEEEEEeccccccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccceeEEE
Q 000092 1364 AMEELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWE 1443 (2267)
Q Consensus 1364 ~le~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~v~~~e 1443 (2267)
+||++. + ....++||||||+|| .|.+.++| .+++++++.|++|||+|||+|||++||
T Consensus 1332 ~leva~-~--~~~~~td~nhiFl~f---~~~~~i~p-----------------~~~ee~v~~~~~~~g~Rl~~lrv~~ae 1388 (2196)
T KOG0368|consen 1332 ELEVAN-N--TDASKTDLNHIFLNF---VPVVIIDP-----------------SKLEEAVRGILKRIGKRLWRLRVTEAE 1388 (2196)
T ss_pred Hhhhhh-h--cccccccccceeeec---ceeeccCH-----------------HHHHHHHHHHHHHHHHHHHHhhhceee
Confidence 999983 3 234579999999999 99999999 899999999999999999999999999
Q ss_pred EEEEEeecc-CCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEeecccccCCCcccccccCcchhhHHHHHhhcC
Q 000092 1444 VKLWMAYSG-QANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVLDQKRLLARRS 1522 (2267)
Q Consensus 1444 ~~~~~~~~~-~~~~~~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g~~g~~~~~~~~~py~~~~~~~~kr~~a~~~ 1522 (2267)
+|++++... ...+|+|++++|.|||++++++|+|+++.+|.++ |+++|++||+||+||++||++||+||.||++||++
T Consensus 1389 i~i~~~~~~t~~~~p~R~~i~NesGyv~~~e~y~Ev~~~~~~~i-~~s~gk~g~~h~~~istpY~~kd~lq~KR~~A~~~ 1467 (2196)
T KOG0368|consen 1389 IRIIIRDPGTGAPGPLRLVISNESGYVVTTEVYTEVKERNGSLI-FHSIGKQGPLHGRPISTPYPPKDWLQPKRLAARRM 1467 (2196)
T ss_pred EEEEEecCCCCCCcceEEEEEcccccEEEEEEEEeecccCccee-eeccCCCCcccccccCCCCCCchhhcHHHHHHHhc
Confidence 997666653 2355999999999999999999999999777777 99999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCC-CCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEEEEecCccc
Q 000092 1523 NTTYCYDFPLAFETALEQSWASQFP-NMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEF 1601 (2267)
Q Consensus 1523 ~t~y~yd~~~~~~~al~~~w~~~~~-~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~ 1601 (2267)
||||+||||+||++|+.+.|++..+ .+...|.+++++.||++|+ +| .|.+++|.||.|.||||||.++++||||
T Consensus 1468 gTTYiYDFP~~F~~a~~~~Wks~~~~~k~~~~~~~f~~~ELV~de-~g----~L~~vnR~pG~N~~GMVAw~~~~~TpEy 1542 (2196)
T KOG0368|consen 1468 GTTYIYDFPEMFRQAASKLWKSPSSGVKVKLWDDFFQVKELVLDE-NG----ELTEVNREPGLNSCGMVAWKLTVKTPEY 1542 (2196)
T ss_pred CCeEEeecHHHHHHHHHHhhcCCCcccCCCcchhhheeeeeeecC-CC----cEEEeccCCCCCcceeEEEEEEecCCCC
Confidence 9999999999999999999998754 2346778999999999998 88 8999999999999999999999999999
Q ss_pred cCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccccccCCCCCCCCcccc
Q 000092 1602 PSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYV 1681 (2267)
Q Consensus 1602 ~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~l 1681 (2267)
|+||+++||+||+||+.|||||.||+.|.++++|||+.|||+||+++|||||||+||++.++|+|+|+|+.+|++||.||
T Consensus 1543 P~Gr~~iVIgNDiTfqiGSFGp~ED~lF~~aselAR~~~iPrIylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~Yl 1622 (2196)
T KOG0368|consen 1543 PEGRDLIVIGNDVTFQIGSFGPREDLLFLAASELAREKGIPRIYLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYL 1622 (2196)
T ss_pred CCCceEEEEeccceEeccCCCChHHHHHHHHHHHHHhcCCCeEEEeccCccccccHHHHHHHheeeccCCCCcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHhhccce-eeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEEEcCcccchhhhh
Q 000092 1682 YLTPEDYARIGSSV-IAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL 1760 (2267)
Q Consensus 1682 y~~~~~~~~l~~~~-~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~vtg~~~G~gAyl 1760 (2267)
|+++++|+++.+.+ .+++++ +.||.||+|++|||+++|||||||+|||+||||||+||++|||||+||||++|||||+
T Consensus 1623 Ylt~ed~~ri~~~~v~~e~~~-~~GE~R~~I~~IiGkeeglGVEnL~GSGlIAGetSrAY~ei~T~t~VT~RsVGIGAYl 1701 (2196)
T KOG0368|consen 1623 YLTPEDYERIGSSVVHCEVVE-ESGEERLKIKAIIGKEEGIGVENLRGSGLIAGETSRAYNEIFTITLVTGRSVGIGAYL 1701 (2196)
T ss_pred EECHHHHHHhhcccceeEEEe-ecCcceEEEEEEecccccccceeccccccccchhhhhhhccceEEEEecceeeHHHHH
Confidence 99999999997664 445445 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCC
Q 000092 1761 ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALP 1840 (2267)
Q Consensus 1761 ~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p 1840 (2267)
+|||+|+||+++++|||||++||||+||++|||||.||||+|||+.|||+|++|.||++|+++|+.||||+|..+++++|
T Consensus 1702 vRLgqR~IQve~~~iILTGa~ALNklLGreVYTSN~QLGG~qIM~~NGVsHlTv~dDleGV~ki~~WlSY~Pa~~~~~~P 1781 (2196)
T KOG0368|consen 1702 ARLGQRIIQVEDQHIILTGASALNKLLGREVYTSNNQLGGPQIMHRNGVSHLTVSDDLEGVAKILNWLSYLPAKRNSPVP 1781 (2196)
T ss_pred HHHHHHHHHhcCCceEEeCHHHHHHHhcccccccccccCCeEEeccCCceEEEecccHHHHHHHHHHHHhCCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccCCC--CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEEEEEEEeccc
Q 000092 1841 IISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQT 1918 (2267)
Q Consensus 1841 ~~~~~d~~~r~~~~~P~--~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~ 1918 (2267)
+.++.|||+|+++++|. .+|||||+|+++.++++ |++||||+|||+|++.+||++||||||||||+||||||+|+++
T Consensus 1782 ~l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~-~~~GlFDk~SF~Eil~~WAktVV~GRArLgGIPvGVIavEtrt 1860 (2196)
T KOG0368|consen 1782 FLEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTG-WLSGLFDKGSFDEILSGWAKTVVTGRARLGGIPVGVIAVETRT 1860 (2196)
T ss_pred ccCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCc-cccccccCccHHHHHhHHhhHheecceecCCcceEEEEEEeee
Confidence 99999999999999999 99999999999999988 9999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHh
Q 000092 1919 VMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLR 1998 (2267)
Q Consensus 1919 ~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~ 1998 (2267)
++.++||||||+||+|++++++||+|||+||+||||||++||+++|||++|+||+||+||++||++++||+||.|+++|+
T Consensus 1861 ve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDaL~ 1940 (2196)
T KOG0368|consen 1861 VENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDALR 1940 (2196)
T ss_pred eeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHH
Q 000092 1999 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQ 2078 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~ 2078 (2267)
.|++|+++||||.|+++||+|+|+||+||++.|||||+..||+||++|+|.|+||||+++++++|.|+||.|+.|+.++.
T Consensus 1941 ~YkQPv~vYIPp~gELRGGsWvVvD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre~Lle~MrR~D~~y~~L~~~l~ 2020 (2196)
T KOG0368|consen 1941 QYKQPVLVYIPPMGELRGGSWVVVDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRREMLLEMMRRLDPTYIKLKSSLS 2020 (2196)
T ss_pred HhCCceEEEcCcchhhcCceEEEEcCccCHHHHHHHhhhhhccccccCCceEEEEeeHHHHHHHHHhcchhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHHHHHhHHHHHH
Q 000092 2079 EAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAESSLVK 2158 (2267)
Q Consensus 2079 ~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~l~e~~~~~ 2158 (2267)
++ ++++++++.++++|++||++|+|+|+|++++|||+||+++||++||+|..+++|.++|+||||+|||||+|+.+++
T Consensus 2021 ~~--~ls~~~~~~l~kqLk~Re~~L~piY~QisvqFAdlHDr~~RM~~kgVI~~~lew~~sRrffywrLrr~l~e~~~~~ 2098 (2196)
T KOG0368|consen 2021 EA--KLSPEDRKDLQKQLKEREEQLLPIYNQISVQFADLHDRSGRMKAKGVISKVLEWTESRRFFYWRLRRRLAEDQLLK 2098 (2196)
T ss_pred cc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 87 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhcCchHHHHHHHHHhHHHHHHHHHHhcccCCcccc
Q 000092 2159 TLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQA 2238 (2267)
Q Consensus 2159 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2238 (2267)
+|..+.+. +|+.+.+++|++||.++. ++. .|+||+.|++|+|++.+|+++|++|+.+++.++|+.+++++ ++.+
T Consensus 2099 ~i~~~~p~-lt~~~~~~~l~~w~~~~~-~~~---~~~~d~~v~~w~e~~~~~~~~i~~l~~~~~~~~l~~~~~sd-~~~~ 2172 (2196)
T KOG0368|consen 2099 EILSASPD-LTYKEKQAMLQKWFEESE-GAV---KWEDDQQVVTWIEEQSTIEKNIEELKETYLLDQLAKLINSD-RKGA 2172 (2196)
T ss_pred HHHHhCcc-cchHHHHHHHHHHHHHhc-ccc---ccccchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhC-hhhH
Confidence 99999995 899999999999998755 333 39999999999998888999999999999999999999997 8888
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 000092 2239 LPQGLATLLSKVDPSCREQLIGEIS 2263 (2267)
Q Consensus 2239 ~~~~~~~~~~~~~~~~~~~~~~~l~ 2263 (2267)
++ ||.++++++|+.+|++++.+|+
T Consensus 2173 ~~-~l~~~~~~is~~~r~el~~~l~ 2196 (2196)
T KOG0368|consen 2173 ID-GLAELLNKISPKRREELVGALS 2196 (2196)
T ss_pred HH-HHHHHHHhcChHHHHHHHHhhC
Confidence 88 9999999999999999999874
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-122 Score=1113.07 Aligned_cols=626 Identities=31% Similarity=0.500 Sum_probs=529.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
||+||||||||++|||+||+||++|+.++ ++|+|.|+++.|+++||+.|.+++.+..++|++.+.|+++
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tV-----------AVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~A 69 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTV-----------AVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDA 69 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceE-----------EEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHH
Confidence 78999999999999999999999988875 6677999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|||||||||+|||++|+++|++.|+.|||||+++++.+|||+.+|.++.++|||+.|.+.
T Consensus 70 a~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~-------------- 135 (645)
T COG4770 70 ARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYH-------------- 135 (645)
T ss_pred HHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999665
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rh 282 (2267)
+.+.+.+++...+++|||||+||++.||||||||+|++++|+.++|+.+++|+. .+.+|||+|++.+||
T Consensus 136 -------g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRH 208 (645)
T COG4770 136 -------GPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRH 208 (645)
T ss_pred -------CcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCce
Confidence 348899999999999999999999999999999999999999999999998864 468999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+|+|+|+|+|||++++++||||+||||||+|||+|+|.++++++++|.++|+++++++||.|++||||+++. ++.||||
T Consensus 209 IEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~-~~~f~Fl 287 (645)
T COG4770 209 IEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFL 287 (645)
T ss_pred EEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcC-CCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 7789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||+|||+|||+||++||+||+++||++|.|++|+. .|.+.+.+||+|
T Consensus 288 EMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~~--------------------------------~Q~di~l~GhAi 335 (645)
T COG4770 288 EMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLPF--------------------------------TQDDIPLNGHAI 335 (645)
T ss_pred EeecceeccccchhhhhhhHHHHHHHHHhcCCcCCc--------------------------------ccccccccceeE
Confidence 999999999999999999999999999999999974 345566779999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++|||+|||..+|+|++|+|..+.+|..++||++.+|..|+.|++|||||++|+|+||.||++|+++|.+||+++.|.|
T Consensus 336 E~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~G- 414 (645)
T COG4770 336 EARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEG- 414 (645)
T ss_pred EEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchhHHHhhHHHHHHHhhhhh--hhccccccccCCCCCCc
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAM--VSDYIGYLEKGQIPPKH 600 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~g~~~~~~ 600 (2267)
+.||++||+.++++|.|+.|+.+|+||++.+++.+ ...|....+..++++.. ....+.. .+.|.+.. |...
T Consensus 415 i~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~-~~~~~~~~~~aa~~~~~-~~~~~~~~~~~pw~~~~--~w~~--- 487 (645)
T COG4770 415 IATNIPFLRALMADPRFRGGDLDTGFIAREIEDLF-APAPASADALAAAALLA-QPALERRAESDPWASLS--GWVV--- 487 (645)
T ss_pred ccccHHHHHHHhcCcccccCCCcceeeeecccccc-cCCCchhhhHHHHHhhh-chhhhcccccCcccccC--Ccee---
Confidence 99999999999999999999999999999998877 23333333333322221 1111110 01111100 0000
Q ss_pred ccccceeeeEeecCe-EEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCcee
Q 000092 601 ISLVNSQVSLNIEGS-KYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTC 679 (2267)
Q Consensus 601 ~~~~~~~vel~~~g~-~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~ 679 (2267)
......+.+..++. .+.+.+... ++.. ...+... .......+.++|......+.....++++...|...
T Consensus 488 -~~~~~~~~~~~~~~~~~~v~l~~~-~g~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 557 (645)
T COG4770 488 -TGDAAELRVLIDGEERVEVRLPAR-EGRE-------RFYVDSD-WDPELASAALSGRKRAVRVARAGGGLTLFWGGGSP 557 (645)
T ss_pred -ecceeeeeEEecCCcceEEEEecc-CCcc-------eeeeecc-CCccceeEEecCccccceeeecCCceEEecCCcCc
Confidence 00011111222222 233322211 1110 1111110 01122445556666655555555666666655554
Q ss_pred ecc----------cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCC
Q 000092 680 LLQ----------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAG 748 (2267)
Q Consensus 680 ~~~----------~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G 748 (2267)
.+. ....++.|+|||||+|+++.|++|+.|.+||+|++|||||||++|+||.+|+|+.+ +++|++|..|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g 637 (645)
T COG4770 558 RIAELDKLGGAKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVG 637 (645)
T ss_pred ccccccccccccccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccC
Confidence 443 12345679999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CEEEEEe
Q 000092 749 ELIARLD 755 (2267)
Q Consensus 749 ~~La~l~ 755 (2267)
++|++++
T Consensus 638 ~vLve~~ 644 (645)
T COG4770 638 TVLVEFE 644 (645)
T ss_pred ceEEEec
Confidence 9999986
|
|
| >PF08326 ACC_central: Acetyl-CoA carboxylase, central region; InterPro: IPR013537 This region is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (IPR000022 from INTERPRO) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-126 Score=1244.83 Aligned_cols=678 Identities=36% Similarity=0.534 Sum_probs=3.5
Q ss_pred ecCCCCccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHhhcCCCCCchhHHHHHH
Q 000092 755 DLDDPSAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHN--IEEVVQNLLNCLDSPELPLLQWQECM 832 (2267)
Q Consensus 755 ~~~~~~~v~~~~~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l~~iL~GYd~~--~~~~l~~l~~~L~dp~LP~~e~~~~l 832 (2267)
++||||+|++++||+|+||.++.|...|.|+|++|+.+++.|+|||+||++. ++++|++|+++|+||+|||+||+++|
T Consensus 1 ~LDDPS~V~~a~pF~G~lp~~~~~~~~g~k~~~~~~~~~~~l~niL~GY~~~~~~~~~v~~L~~~L~dp~LP~~E~~e~l 80 (708)
T PF08326_consen 1 ELDDPSKVKKAQPFEGTLPEMGPPQIEGEKPHQRFRAALEILHNILAGYDNQNIMNETVKELFEVLRDPELPYLEWQEVL 80 (708)
T ss_dssp E-S-S----S----------------------------------------------------------------------
T ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999654 99999999999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHhhhhhhhccccCCCCchhhHHHHHHHHHhhccccccchhhHhhhhHHHHHHhhcCChhhHHH
Q 000092 833 AVLSTRLPKDLKNELESKCKEFERISSSQNVDFPAKLLRGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHAR 912 (2267)
Q Consensus 833 s~Ls~RiP~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~G~~~~~~ 912 (2267)
|+|++|||++|+++|++.+++|+.+. .+||+++|+++++.|++ +.+ |+.|+++++||.+++++|++|+++|++
T Consensus 81 s~l~~RiP~~l~~~i~~~~~~~~~~~----~~FPa~~l~~~i~~~~~-~~~--r~~~~~~~~pL~~l~~~y~~G~~~h~~ 153 (708)
T PF08326_consen 81 SALSGRIPAKLEAQIRQLLERYKSRI----TSFPAKQLRKIIDSYLA-LEP--RAAFFATVAPLVDLVQRYRGGLKGHAK 153 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccCCHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHhhhc-cCc--HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999998877764 44999999999999999 633 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhchhhHHHHHHHHHhcccccchHHHHHHHHHhhcCCC---ChhHHHHHH
Q 000092 913 VIVQSLFEEYLSVEELFSDQIQADVIERLRLQYKKDLLKVVDIVLSHQGVKRKNKLILRLMEQLVYPN---PAAYRDKLI 989 (2267)
Q Consensus 913 ~~~~~ll~~y~~ve~~f~~~~~~~~i~~lr~~~k~~~~~v~~~~~sh~~~~~k~~lv~~ll~~~~~~~---~~~~~~~L~ 989 (2267)
+++.+||++|++||++|+++++|+||..||++||+|+++|+++++||++++.||+||++||+++...+ ...++++|+
T Consensus 154 ~v~~~LL~~Yl~VE~~F~~~~~d~vI~~LR~~~k~dl~~Vv~~~~SH~~v~~Kn~Lil~lL~~l~~~~~~~~~~~~~~L~ 233 (708)
T PF08326_consen 154 SVVADLLEEYLSVEKLFQGKRYDDVILSLREENKDDLDKVVDIILSHSQVKSKNKLILALLDQLSEPNMPLTASLRDILK 233 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999986663 357999999
Q ss_pred HHHhccCCCchHHHHHHHHHHHHhccchhHHHHHHHHHHh-h--h-ccccCCCCCCccCccchHHHHHHhhcCCchhHHh
Q 000092 990 RFSALNHTNYSELALKASQLLEQTKLSELRSSIARSLSEL-E--M-FTEDGESMDTPKRKSAIDERMEDLVSAPLAVEDA 1065 (2267)
Q Consensus 990 ~l~~l~~~~~~~val~Ar~~l~~~~~ps~~~r~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~l~~l~~s~~~~~d~ 1065 (2267)
+|++|++++|++|||+|||||++|++||+++|++||+++| + . .++.||+..+.++ +++.++|++||+|++++||+
T Consensus 234 ~La~L~~~~~~~VAL~AR~iLi~~~lPS~e~R~~q~e~iL~s~~~v~~~~~g~~~~~~~-~~~~~~l~~Li~s~~~vfDv 312 (708)
T PF08326_consen 234 RLAELESRSYSKVALKAREILIQCQLPSYEERRNQMEHILRSLISVVESSYGEDFAKHR-EPSPEVLKELIDSPTTVFDV 312 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhCCChhHHHHHHHHHHhcchhhhhhhccccccccc-cccHHHHHHHHcCCCcchhh
Confidence 9999999999999999999999999999999999999999 3 2 3455787665555 89999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhhcccccccccccceeeeecc---eEEEEEEecccc--c----------ccCCCCCCCC
Q 000092 1066 LVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWHRCG---LIASWEFLEEHI--E----------RKNGPEDQTP 1130 (2267)
Q Consensus 1066 L~~~f~~~~~~~~~~alevyvrr~Y~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~--~----------~~~~~~~~~~ 1130 (2267)
|+.||+|+|++|+.+||||||||+|++|.|+ +++|+..+ ++++|+|.+|+. + +..+.+++++
T Consensus 313 L~~fF~h~d~~v~~aAlEvYVRRaYraY~l~---~i~~~~~~~~~~~~~w~F~L~~~~~~~~~~~~~~~~r~~s~s~~~~ 389 (708)
T PF08326_consen 313 LPSFFDHSDPWVARAALEVYVRRAYRAYSLK---SIQHHELDDGPPIVSWQFMLPSSHPSRFNSSPSSSSRFASVSDLSY 389 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHhcCCChHHHHHHHHHHHHHhccceeee---eEEEEEcCCCceEEEEEEECCCccccccCccccccccccCCChhhh
Confidence 9999999999999999999999999999999 89988755 889999988762 1 3456666666
Q ss_pred CCcccccccccceeEEEEccCcCcHHHHHHHHHhh-cccCCCCccccCCCCcCCCCcEEEEEEecccccccccCCCCCHH
Q 000092 1131 EQPLVEKHSERKWGAMVIIKSLQSFPDILSAALRE-TAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGDED 1209 (2267)
Q Consensus 1131 ~~~~~~~~~~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 1209 (2267)
..+. ....|+|+|+.|++++++.+.++++|+. +.... ..+..+...+++.||+||++++ ..+.. +|+
T Consensus 390 ~~~~---~~~~R~Gvmv~~~~l~~l~~~~~~~L~~~~~~~~--~~~~~~~~~~~~~nVl~val~~------~~~~~-~d~ 457 (708)
T PF08326_consen 390 LIDS---SSSERTGVMVAFDSLEDLEEALPAALEEFPDADG--NTSTGSGSSSEPINVLNVALSD------SSGSD-DDE 457 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh---cccccceEEEEeCcHHHHHHHHHHHHHhhccccc--ccccccCCCCCCCeEEEEEEec------CCCCc-CHH
Confidence 5543 2234999999999999999999999998 32110 0001112235789999999986 22332 677
Q ss_pred HHHHHHHHHHHHhhhcccccCcccCCeeEEEEEEecCCCCCCeeEEeccCCccCCCccccccccCCCCcchhhhhccccC
Q 000092 1210 QAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFHWSPEKFYYEEEPLLRHLEPPLSIYLELDKLKG 1289 (2267)
Q Consensus 1210 ~~~~~~~~~~~~~~~~~~~~~l~~~~vrrvt~~~~~~~~~~p~~ftfr~~~~~~~~~Ed~~~R~~~p~~a~~Lel~rl~n 1289 (2267)
++.++|++++++++. .|..+|||||||+++++.+.+|+|||||++ ++|.||++|||+||++||||||+||+|
T Consensus 458 e~~~~l~~~l~~~~~-----~L~~~~vrrVt~~v~~~~~~~P~~fTFr~~---~~~~Ed~~~R~ieP~la~~LEL~RL~n 529 (708)
T PF08326_consen 458 ELAEKLEAILKENKS-----ELRAAGVRRVTFIVARDEGQYPKYFTFRAS---DEYEEDRLIRHIEPALAFQLELWRLSN 529 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHH-----HHHhcCceEEEEEEccCCCCCceEEEeCCC---CCcchhhHhccCCchhHHHhhhhhhhC
Confidence 899999999999998 999999999999999866789999999964 469999999999999999999999999
Q ss_pred CCCceeeccCCCcceEEEeecCC--CC-ceeEEEEEeecCCCCCCCCcccccccCCccccccccccchHHHHHHHHHHHH
Q 000092 1290 YDNIQYTLSRDRQWHLYTVVDKP--LP-IRRMFLRTLVRQPTSNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAME 1366 (2267)
Q Consensus 1290 f~~~~~~p~~~~~~hly~~~~k~--~~-d~r~f~r~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~ld~le 1366 (2267)
|+ |+++||.|++||||+|++|+ ++ |+|||+|++||++++.+++.+. +| +++++||+|.+|||+||
T Consensus 530 f~-i~~~ps~~~~~HlY~a~~k~~~~~~d~R~F~RaiVR~~~~~~~~~~~---~~--------~~~e~er~l~~~Ld~Le 597 (708)
T PF08326_consen 530 FD-ITRLPSRNRQIHLYRAVAKKKQNPADRRFFARAIVRQGDLRRDESGA---EY--------LISEAERLLADALDALE 597 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-cEEecCCCCceEEEEEeccCCCCCCceEEEEEEEeecCccccccchh---hh--------hhhhHHHHHHHHHHHHH
Confidence 99 99999999999999999998 66 9999999999999999888777 77 88999999999999999
Q ss_pred HHHhcccccCCCCCccEEEEEEeccccccccCCCCCcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccceeEEEEEE
Q 000092 1367 ELELNVHNASVKSDHAQMYLCILREQKINDLVPYPKRVDVDAGQEETAIEALLEELAREIHATVGVRMHKLGVCEWEVKL 1446 (2267)
Q Consensus 1367 ~~~~~~~~~~~~~~~nhifl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~rl~~l~v~~~e~~~ 1446 (2267)
++..++ ..+++||||||||| ||++.++| .++++++++|++|||+|||||||++||||+
T Consensus 598 ~a~~~~--~~~~~d~Nhifln~---~p~~~~~~-----------------~~le~~~~~~~~r~g~RL~rLrV~~vEir~ 655 (708)
T PF08326_consen 598 VAQSNP--RVKRTDCNHIFLNF---WPELELDP-----------------EDLEAAVRGFVERYGRRLWRLRVTQVEIRI 655 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhccc--ccccccCceEEEEE---ecccCCCH-----------------HHHHHHHHHHHHHHHHHHHhcCccEEEEEE
Confidence 998773 34588999999999 99999999 999999999999999999999999999995
Q ss_pred EEee-ccCCCCceEEEEeCCCCcEEEEEEEEEeecCCCceEEEEEee-cccccC
Q 000092 1447 WMAY-SGQANGAWRVVVTNVTGHTCAVYIYRELEDTSKHTVVYHSVA-VRGLLH 1498 (2267)
Q Consensus 1447 ~~~~-~~~~~~~~R~~~~n~sG~~~~~~~Y~E~~~~~~~~~~~~~~g-~~g~~~ 1498 (2267)
+++. ..+...|+|++++|+|||++++++|+|++|++|+++ |+|+| ++||||
T Consensus 656 ~~~~~~~~~~~p~Rvvisn~sG~~~~v~~Y~E~~~~~g~~i-f~si~~~~G~~h 708 (708)
T PF08326_consen 656 RIRDPSTGAPIPVRVVISNPSGYVVKVEIYREVKDPKGEWI-FKSIGSKPGPLH 708 (708)
T ss_dssp ------------------------------------------------------
T ss_pred EeccCCCCCccceEEEEECCCCCeEEEEEEEEEECCCCCEE-EEECCCCCCCCC
Confidence 5552 222355999999999999999999999999997777 99999 599998
|
Enzymes containing this domain (6.4.1.2 from EC) are involved in the synthesis of long-chain fatty acids, as they catalyses the rate limiting step in this process. ; GO: 0003989 acetyl-CoA carboxylase activity, 0005524 ATP binding, 0006633 fatty acid biosynthetic process; PDB: 2DN8_A 2KCC_A 3COJ_H. |
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-115 Score=1031.67 Aligned_cols=635 Identities=29% Similarity=0.442 Sum_probs=539.8
Q ss_pred EEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHc
Q 000092 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMT 130 (2267)
Q Consensus 51 VLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~ 130 (2267)
|||+|||++|+|+||+||+||++++ ++++|.|.++.|+++||++|++++.+...+|++.+.|+++|++.
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tV-----------AV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~t 69 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTV-----------AVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRT 69 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEE-----------EEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhc
Confidence 6999999999999999999988775 66779999999999999999999999999999999999999999
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
+++||||||||+|||.+|++.|+++||.|+||++.+++.+|||..+|++++++|||+.|.+.
T Consensus 70 gaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~------------------ 131 (670)
T KOG0238|consen 70 GAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYH------------------ 131 (670)
T ss_pred CCceecCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999654
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhieVq 286 (2267)
+...|.+++.+.+++||||||||++.||||||+|++++++|+.+.|+.++.|+. .+.+|+|+|++++||+|||
T Consensus 132 ---g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQ 208 (670)
T KOG0238|consen 132 ---GEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQ 208 (670)
T ss_pred ---cccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEE
Confidence 227899999999999999999999999999999999999999999999988864 4689999999999999999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+++|++||+++|++||||+||||||+||++|++.++++++.+|.++|+++++++||.|++||||++|+ .+.|||+|||+
T Consensus 209 v~gD~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNT 287 (670)
T KOG0238|consen 209 VFGDKHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNT 287 (670)
T ss_pred EEecCCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CCcEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 78899999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|||+|||+|||+||+||+++||++|+|.||+. .|...+.+||+++|||
T Consensus 288 RLQVEHPvTEmItg~DLVewqiRvA~ge~lp~--------------------------------~q~ei~l~GhafE~Ri 335 (670)
T KOG0238|consen 288 RLQVEHPVTEMITGTDLVEWQIRVAAGEPLPL--------------------------------KQEEIPLNGHAFEARI 335 (670)
T ss_pred eeeecccchhhccchHHHHHHHHHhcCCCCCC--------------------------------CcceeeecceEEEEEE
Confidence 99999999999999999999999999999973 4556677899999999
Q ss_pred ccCCCCCCCCCCCCccccccccC-CCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEeccccc
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKS-KPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRT 525 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s-~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~t 525 (2267)
|||||..+|.|++|++..+.+|. +|+||++.+|.+|+.|+.+||||++|+++||.||++|+.+|..||+++.|+| +.|
T Consensus 336 yAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~G-v~t 414 (670)
T KOG0238|consen 336 YAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRG-VPT 414 (670)
T ss_pred eecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHHHHHHhhcEEec-Ccc
Confidence 99999999999999999999884 7899999999999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHhcCCcccccccccchhhhhhhhhhhccCC--CCc--hhHHHhhHHHHHHHhhhhhhhccccccccCCC---CC
Q 000092 526 NVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAER--PPW--YLSVVGGALYKASASSAAMVSDYIGYLEKGQI---PP 598 (2267)
Q Consensus 526 n~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~--~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~---~~ 598 (2267)
||+||++|+.+|+|..|+++|.||+++..+.+..+. |.. ..+.++.++.... ......|... .+++. +.
T Consensus 415 nI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~~~---~~~a~~f~~~-n~~~~~v~~~ 490 (670)
T KOG0238|consen 415 NIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITPAEQLSQAAVASSLNAWA---SGRAYQFRLQ-NKDRASVFSS 490 (670)
T ss_pred chHHHHHHhcChhhhcCccccccchhcCccccCccccCcHHHHHHHHHHHHHHHHh---hchhhHHhhc-cCCccceecc
Confidence 999999999999999999999999999887765532 222 2233333332211 1112223211 12221 11
Q ss_pred Cccc----ccceeeeEeecCeEEEEEEEeecCceEEEEECCeEEE-EE--EEE-ecCCceEEEeCCceEEEEeeecccce
Q 000092 599 KHIS----LVNSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIE-AE--IHT-LRDGGLLMQLDGNSHVVYAEEEAAGT 670 (2267)
Q Consensus 599 ~~~~----~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~-V~--v~~-l~dg~~~v~~~G~s~~v~~~e~~~~~ 670 (2267)
...- .....+.+..+...+.+.|...+.++|.+.++|+.+. +. +.. ...+.+.+..+|..+...........
T Consensus 491 ~~~~r~n~s~~~~~~~~~~e~~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 570 (670)
T KOG0238|consen 491 SPPFRFNCSLVVKITLKTGENPVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDGEGNGYQGRVIILGDEI 570 (670)
T ss_pred CCceEEEEeeEEEEcccCCccceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEeccCceEEEEEEeCCeE
Confidence 0000 0111222222334577888888888999999988843 32 211 22333444555544444443333334
Q ss_pred EEEEcCceeec--------------ccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEE
Q 000092 671 RLLIDGRTCLL--------------QNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQ 736 (2267)
Q Consensus 671 ~v~v~g~t~~~--------------~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~ 736 (2267)
.+...+....+ .++..++.+.|||||.|.+++|++||.|++||.+++|||||||+.++||.+|+|+
T Consensus 571 ~l~~~~~~~~ve~~~~k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk 650 (670)
T KOG0238|consen 571 SLFSNEGVIKVEVLPPKYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVK 650 (670)
T ss_pred EEEecCcceeEecCChHhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCcee
Confidence 44433322222 1345677899999999999999999999999999999999999999999999999
Q ss_pred Ee-eCCCCccCCCCEEEEEe
Q 000092 737 FK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 737 ~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+ ++.|++|..|++|.+++
T Consensus 651 ~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 651 DVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred eEeeecCcccCCCceEEEeC
Confidence 99 99999999999999874
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-97 Score=907.73 Aligned_cols=446 Identities=34% Similarity=0.590 Sum_probs=414.3
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIV 124 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~Il 124 (2267)
..|+||||||||++|+|++|+|.++|+.| |+++..+| ..+.|...||+.|.++.+ .+.+.|+++|.|+
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~T---------VAIys~ED--~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII 73 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKT---------VAIYSEED--RLSLHRFKADESYLIGEGKGPVEAYLSIDEII 73 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceE---------EEEeeccc--cchhhhccccceeeecCCCCchHHhccHHHHH
Confidence 46899999999999999999999997666 56666555 788999999999999865 4457999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
++|++.++|+|||||||+|||++|++.|.++||.|+||+++.|+.+|||..++..|.++|||+.|.+.
T Consensus 74 ~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~------------ 141 (1149)
T COG1038 74 RIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTD------------ 141 (1149)
T ss_pred HHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999664
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEecccc
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQS 280 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~ 280 (2267)
+.+.+.+++.++++++|||+|||++.||||+|||+|.++++|.+++.++.+|+. ++.++||+|++++
T Consensus 142 ---------~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~p 212 (1149)
T COG1038 142 ---------GPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENP 212 (1149)
T ss_pred ---------CCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCc
Confidence 237889999999999999999999999999999999999999999999998864 4689999999999
Q ss_pred ceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+|+|||+++|.+||++||++||||+||||||++|.+|++.++++++.+|++.|+++++.+||.|++||||+++ .+++||
T Consensus 213 kHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd-~~~~fy 291 (1149)
T COG1038 213 KHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVD-EDGKFY 291 (1149)
T ss_pred ceeEEEEeecCCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEc-CCCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 467999
Q ss_pred EeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000092 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2267)
Q Consensus 361 fLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gh 440 (2267)
|||+|||+|+||.+||++||||++++|+++|.|..|+. | +..+. .|..+...||
T Consensus 292 FIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~-~---------------------e~glp----~q~dI~~~G~ 345 (1149)
T COG1038 292 FIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHT-P---------------------ELGLP----QQKDIRTHGY 345 (1149)
T ss_pred EEEecCceeeEEeeeeeeechhHHHHHHHHhccCccCC-c---------------------ccCCC----ccccccccce
Confidence 99999999999999999999999999999999998872 1 11111 4456788999
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 441 ai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
||+||||.|||.++|.|..|+|..++-.++-|||.+. .--.|..|.+||||++-|+-+||.|.++|+++|.++|.|++|
T Consensus 346 AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrI 425 (1149)
T COG1038 346 AIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRI 425 (1149)
T ss_pred EEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999998888888999884 345788999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCCcccccccccchhhhh
Q 000092 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2267)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2267)
|| |+||++||.+++.||.|.+|+++|+|||.
T Consensus 426 rG-VkTNi~FL~~vl~h~~F~~g~y~T~FId~ 456 (1149)
T COG1038 426 RG-VKTNIPFLEAVLNHPDFRSGRYTTSFIDT 456 (1149)
T ss_pred cc-eecCcHHHHHHhcCcccccCcceeeeccC
Confidence 99 99999999999999999999999999995
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-88 Score=810.37 Aligned_cols=440 Identities=35% Similarity=0.577 Sum_probs=409.1
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLIVEMA 127 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~Il~iA 127 (2267)
+||||||||++|+|+.|+|.+++.++ |+++. ..+..+.|...||+.|.++.+ +....|+.++.|+++|
T Consensus 34 ~kvlVANRgEIaIRvFRa~tEL~~~t---------vAiYs--eqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~ia 102 (1176)
T KOG0369|consen 34 NKVLVANRGEIAIRVFRAATELSMRT---------VAIYS--EQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIA 102 (1176)
T ss_pred ceeEEecCCcchhHHHHHHhhhcceE---------EEEEe--ccchhhhhhhccccceecccCCCchhhhhhHHHHHHHH
Confidence 79999999999999999999997665 56665 555889999999999998754 4456899999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|||||||+||+.+|+++|.++|+.|+||+++.+..+|||..+|.+|-++|||+.|...
T Consensus 103 k~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTp--------------- 167 (1176)
T KOG0369|consen 103 KKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTP--------------- 167 (1176)
T ss_pred HHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999654
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhi 283 (2267)
+++++.+|+.+++++.|||+|+|+..||||+|||+|++.++++++|+++.+|+. ++.+|||+|++.+||+
T Consensus 168 ------gPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 168 ------GPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred ------CCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 458999999999999999999999999999999999999999999999888753 5689999999999999
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
|||+++|.+||++++++||||+||||||++|.+|++.+++++++.|...|+++++.+||..++|+||++| ..|++||||
T Consensus 242 EvQllgD~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD-~~g~hYFIE 320 (1176)
T KOG0369|consen 242 EVQLLGDKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVD-QKGRHYFIE 320 (1176)
T ss_pred EEEEecccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEc-cCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 578999999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+|+||.+||.+||+||+.+|+++|.|..|+.+ |. .|..+.++|.+|+
T Consensus 321 vN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~l-------gl----------------------~QdkI~trG~aIQ 371 (1176)
T KOG0369|consen 321 VNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDL-------GL----------------------TQDKITTRGFAIQ 371 (1176)
T ss_pred ecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccc-------cc----------------------cccceeecceEEE
Confidence 999999999999999999999999999999998753 11 4567788999999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEE-eeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~-~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
||+|.|||.++|.|.+|+|+-++--.+.|++.+. +--+|..|+++|||++-+|++.|.|.+-++++|.+||.+++|||
T Consensus 372 CRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRG- 450 (1176)
T KOG0369|consen 372 CRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRG- 450 (1176)
T ss_pred EEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcc-
Confidence 9999999999999999999854444456677763 45578999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2267)
++|||+||.++|.+|.|.+|+++|.|||+
T Consensus 451 VKTNIpFllnvL~n~~Fl~g~~~T~FIDe 479 (1176)
T KOG0369|consen 451 VKTNIPFLLNVLTNPVFLEGTVDTTFIDE 479 (1176)
T ss_pred eecCcHHHHHHhcCcceeeeeeeeEEecC
Confidence 99999999999999999999999999996
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-86 Score=845.19 Aligned_cols=483 Identities=34% Similarity=0.559 Sum_probs=452.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
||+||||+|+|++|+++|++||+||++++ ++ +++.+.++.++++||+++++|++.+.++|+|++.|+++
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V---------~v--~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~ 69 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTV---------AV--YSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDV 69 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE---------EE--eccccccccchhhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 68999999999999999999999998875 34 44667899999999999999988888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|||||||++||+.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~------------- 136 (499)
T PRK08654 70 AKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEE------------- 136 (499)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998751
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
.+.+.+++.++++++||||||||+.||||+||++|++.+||.++++.+..++ ..+++|||+|+++++|
T Consensus 137 --------~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ 208 (499)
T PRK08654 137 --------GIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRH 208 (499)
T ss_pred --------CCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcE
Confidence 1578999999999999999999999999999999999999999999876432 3467999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++||+++|++|+++++++|||++||+|||+++++|++.++++++++|.+.|.++++++||.|++||||+++ +++||||
T Consensus 209 ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yfl 286 (499)
T PRK08654 209 IEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFL 286 (499)
T ss_pred EEEEEEEcCCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEE
Confidence 99999999999999999999999999999999999988999999999999999999999999999999997 7899999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|++||++||+||+++|+++|+|.|++. .+..+.++||+|
T Consensus 287 EiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~l~~--------------------------------~~~~~~~~g~ai 334 (499)
T PRK08654 287 EMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEELSF--------------------------------KQEDITIRGHAI 334 (499)
T ss_pred EEECCCCCCCceeehhhCCCHHHHHHHHhcCCCCCC--------------------------------cccccccceEEE
Confidence 999999999999999999999999999999999863 223456679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+||||||||..+|.|++|+|+.+.+|++++|+++.++..|..++++|||++||||+||+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g- 413 (499)
T PRK08654 335 ECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG- 413 (499)
T ss_pred EEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhh--hhhhhc---c---CCCCchhHHHhhHHHHHHHhhhhhhhccccccccC
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSR--IAMRVR---A---ERPPWYLSVVGGALYKASASSAAMVSDYIGYLEKG 594 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~--~~~~~~---~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~g 594 (2267)
++||++||+.||++|+|++|+++|+|||++ |.++++ . ++|+ +++++|++.++++....+....|.+.+++|
T Consensus 414 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (499)
T PRK08654 414 VKTNIPFHKAVMENENFVRGNLHTHFIEEETTILEEMKRYALEEEEREK-TLSEKFFPGNKKVAAIAAAVNAYISSAKKD 492 (499)
T ss_pred ccCCHHHHHHHhCCHhhcCCCccchhhhcCHHHHHHHHHHhhhcccccc-hHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 877765 3 4555 889999999999999999999999999999
Q ss_pred CCC
Q 000092 595 QIP 597 (2267)
Q Consensus 595 ~~~ 597 (2267)
|-.
T Consensus 493 ~~~ 495 (499)
T PRK08654 493 NEE 495 (499)
T ss_pred ccc
Confidence 854
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-86 Score=816.44 Aligned_cols=421 Identities=31% Similarity=0.466 Sum_probs=376.7
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
.|+|+|..++ +||+|++++||+|+++||+|+.+.+|+.|++++|.++|+|+|||.+||||||| |++
T Consensus 79 dGvVtG~G~i------~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~--~~v------ 144 (526)
T COG4799 79 DGVVTGIGTI------NGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQ--EGV------ 144 (526)
T ss_pred CeeEEeeeee------CCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccc--cCc------
Confidence 6999999977 99999999999999999999999999999999999999999999999999999 433
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
+|++|+|.|+...++++..||||
T Consensus 145 ---------------------------------------------------------~~l~g~g~iF~~~a~~Sg~IPqI 167 (526)
T COG4799 145 ---------------------------------------------------------PSLAGYGRIFYRNARASGVIPQI 167 (526)
T ss_pred ---------------------------------------------------------cccccchHHHHHHHHhccCCCEE
Confidence 34455555555566666668999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCccccccc-cCceEEEecCcHHHHHHH
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMAT-NGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~-nGv~d~~v~dd~e~~~~i 1824 (2267)
|+|+|+|+|||||+++|+|++||+++ ++||||||++||+++|++| |.++|||+++|++ +|++|++++||+++++.+
T Consensus 168 svv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~V--~~e~LGGa~vh~~~sGva~~~a~dd~~Ai~~v 245 (526)
T COG4799 168 SVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEV--SAEELGGAQVHARKSGVADLLAEDDEDAIELV 245 (526)
T ss_pred EEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcEe--ehhhccchhhhcccccceeeeecCHHHHHHHH
Confidence 99999999999999999999999999 7899999999999999999 7779999999996 599999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceE
Q 000092 1825 LKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTV 1897 (2267)
Q Consensus 1825 ~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~v 1897 (2267)
|+||||||+++.+++|+.++.|+++++. +++|. ++||+|++|.+ |||.+||+|++++||+++
T Consensus 246 r~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~r-----------l~D~~~F~E~~~~~a~~i 314 (526)
T COG4799 246 RRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIAR-----------LVDDGEFLEFKAGYAKNI 314 (526)
T ss_pred HHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHH-----------hcCCccHHHHHhhhCcce
Confidence 9999999999999999877777776654 56777 99999999998 799999999999999999
Q ss_pred EEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCC
Q 000092 1898 VTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSG 1977 (2267)
Q Consensus 1898 VtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~ 1977 (2267)
|||||||+|+|||||||+++ +.||+|++++|.|+||||++|++++||||+|+|||||++
T Consensus 315 V~GfaRi~G~pVGiIANqp~---------------------~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~ 373 (526)
T COG4799 315 VTGFARIDGRPVGIIANQPR---------------------HLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMP 373 (526)
T ss_pred EEEEEEECCEEEEEEecCcc---------------------ccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCC
Confidence 99999999999999999755 349999999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhhcch
Q 000092 1978 GQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056 (2267)
Q Consensus 1978 G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~~r~ 2056 (2267)
|+++|++|++|+||++++|+++++||+|++|+ +++|||+|.+|++. +++++ +||||+|+++||||||||.|+||+
T Consensus 374 G~~~E~~giik~Gakl~~A~aeatVPkitvI~--rkayGga~~~M~~~~~~~~~--~~AwP~a~iaVMG~egAv~i~~~k 449 (526)
T COG4799 374 GTDQEYGGIIKHGAKLLYAVAEATVPKITVIT--RKAYGGAYYVMGGKALGPDF--NYAWPTAEIAVMGPEGAVSILYRK 449 (526)
T ss_pred ChhHHhChHHHhhhHHHhhHhhccCCeEEEEe--cccccceeeeecCccCCCce--eEecCcceeeecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999 67899999999987 78887 999999999999999999999996
Q ss_pred hhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2057 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
+ ++.|.+ ..++++.++ ++++.+|.+.+..|..+.+.|+||+||+|
T Consensus 450 ~--l~~~~~-------------------~~~~~~~~~--------------~~~~~eY~~~~~~p~~aa~r~~iD~vI~p 494 (526)
T COG4799 450 E--LAAAER-------------------PEEREALLR--------------KQLIAEYEEQFSNPYYAAERGYIDAVIDP 494 (526)
T ss_pred H--hhcccC-------------------chhHHHHHH--------------HHHHHHHHHhccchHHHHHhCCCCcccCH
Confidence 5 333322 111112222 34566777777789999999999999999
Q ss_pred cchHHHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRRRV 2151 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r~l 2151 (2267)
.+||..|..+|++-.
T Consensus 495 ~~tR~~L~~~l~~~~ 509 (526)
T COG4799 495 ADTRAVLGRALSALA 509 (526)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
|
|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-84 Score=804.68 Aligned_cols=442 Identities=38% Similarity=0.639 Sum_probs=419.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|++||||+|+|++|++++|+|++||++++ +++++.+..+.|+++||+++++++....++|+|++.|+++
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tv-----------av~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~ 69 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETV-----------AVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAA 69 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEE-----------EEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHH
Confidence 68999999999999999999999988874 4455777888999999999999987888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|||||||+|||+.|++.|++.|+.|+||++++++.++||+.+|++++++|||++||+.
T Consensus 70 a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~-------------- 135 (449)
T COG0439 70 AEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSD-------------- 135 (449)
T ss_pred HHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC---CC-cEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GS-PIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~---~~-~I~VEeyI~g~rh 282 (2267)
+.+.+.+++.+.+++|||||||||+.||||+|||+|++.+||.++|.+++++.. ++ .+++|||++++||
T Consensus 136 -------~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rh 208 (449)
T COG0439 136 -------GAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRH 208 (449)
T ss_pred -------CCcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCce
Confidence 125678999999999999999999999999999999999999999999998875 44 4999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++|+++|++|+++++++|||++||||||+++++|++.++++.+.+|.+.++++++++||.|++|+||+++. +++||||
T Consensus 209 ievqv~gD~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfi 287 (449)
T COG0439 209 IEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFI 287 (449)
T ss_pred EEEEEEEcCcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 6899999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||+||+||+||++||+||+.+||++|+|.+++. .+.+...+||++
T Consensus 288 EmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~~--------------------------------~q~~~~~~g~ai 335 (449)
T COG0439 288 EMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLSL--------------------------------KQEDIKFRGHAI 335 (449)
T ss_pred EEecccccCccceehhhhhhHHHHHHHHHcCCCCCC--------------------------------CCCcccccceee
Confidence 999999999999999999999999999999988763 223344569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+|||++|||..+|.|++|.++...+|++++||++.++..|..++++||||+||+|++|.+|++|+.+|.+||++++|+|
T Consensus 336 e~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G- 414 (449)
T COG0439 336 ECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDG- 414 (449)
T ss_pred eceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2267)
++||++|++.++++++|.+|+++|+||++++.
T Consensus 415 ~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 415 IKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred ccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 99999999999999999999999999998754
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-83 Score=864.39 Aligned_cols=443 Identities=35% Similarity=0.583 Sum_probs=410.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC---CCCCCccCHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG---TNNNNYANVQLIVEM 126 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~---~~~~~Y~dvd~Il~i 126 (2267)
||||||||++|++++|+|+++|++++ +++++.+..+.|.++||++|.+|.+ ....+|+|++.|+++
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tV-----------av~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~i 69 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTV-----------AIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRV 69 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHH
Confidence 69999999999999999999998885 4445667889999999999999876 345799999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++.+++++|||+|||+.
T Consensus 70 ak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~-------------- 135 (1143)
T TIGR01235 70 AKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTD-------------- 135 (1143)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++||||||||+.||||+|+++|++.+||.++++.+.+++ .++++|||+|+++++|
T Consensus 136 -------~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~re 208 (1143)
T TIGR01235 136 -------GPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRH 208 (1143)
T ss_pred -------cCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999999887653 2468999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++||+++|++|+++++++|||++||+|||+++.+|++.++++++++|++.|.++++++||.|++||||++++ +|++|||
T Consensus 209 IeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfI 287 (1143)
T TIGR01235 209 IEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFI 287 (1143)
T ss_pred EEEEEEEeCCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 5789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|++||+++|+|++++|+++|+|.+++.+ ++ | + ..|..+.++||||
T Consensus 288 EVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~L~~~-~~----~-------------------~--~~q~~~~~~g~ai 341 (1143)
T TIGR01235 288 EVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTP-QL----G-------------------V--PNQEDIRTNGYAI 341 (1143)
T ss_pred EeecCCCcchhHHHHHhCcHHHHHHHHHHcCCCCCcc-cc----C-------------------C--CcccccCCCcEEE
Confidence 9999999999999999999999999999999998731 00 1 0 1345667889999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+||||+|||.++|.|++|+|+.+.+|++++||++.+ ..+|..|+++|||+++|||+||.||++|+++|.+||+++.|+|
T Consensus 342 ~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~g 421 (1143)
T TIGR01235 342 QCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRG 421 (1143)
T ss_pred EEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEEC
Confidence 999999999999999999999999999999999987 5589999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+||++||+++|+||+|++|+++|+|||++
T Consensus 422 -v~tn~~~l~~~l~~~~f~~~~~~t~~~~~~ 451 (1143)
T TIGR01235 422 -VKTNIPFLENVLGHPKFLDGSYDTRFIDTT 451 (1143)
T ss_pred -ccCCHHHHHHHhcCHhhcCCCccchhhhcC
Confidence 999999999999999999999999999985
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=846.09 Aligned_cols=448 Identities=34% Similarity=0.572 Sum_probs=414.4
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~I 123 (2267)
++|||||||+|+|++|++++|+|+++|++++ +++++.+.++++..+||+++++|.+ .+.++|+|++.|
T Consensus 2 ~~~~kkvLianrGeiavri~raa~elGi~~V-----------av~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~I 70 (1146)
T PRK12999 2 MKKIKKVLVANRGEIAIRIFRAATELGIRTV-----------AIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEI 70 (1146)
T ss_pred CCcccEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHH
Confidence 4689999999999999999999999998875 4455777889999999999999876 345799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|+++++|+|||||||++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 71 i~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~----------- 139 (1146)
T PRK12999 71 IRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSE----------- 139 (1146)
T ss_pred HHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g 279 (2267)
..+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+.+++. .+++++|+|+++
T Consensus 140 ----------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 140 ----------GPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred ----------cCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 126789999999999999999999999999999999999999999998876542 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++||+++|++|+++++++|+|++||+|||+++.+|+..++++++++|.+.|.++++++||.|++|+||++++ +++|
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~ 288 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNF 288 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCE
Confidence 999999999999999999999999999999999999999889999999999999999999999999999999984 5689
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||||||+|++|+++|+++|+|++++|+++|+|.|++.++ + |. +.+..+.++|
T Consensus 289 yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G~~l~~~~-~----~~---------------------~~q~~~~~~g 342 (1146)
T PRK12999 289 YFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGATLHDLE-I----GI---------------------PSQEDIRLRG 342 (1146)
T ss_pred EEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCCCCCCccc-c----cc---------------------ccccccccce
Confidence 99999999999999999999999999999999999987421 0 10 0234556789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
|+|+||||+|||.++|.|.+|+|+.+..|++++|+++.++. +|..|+++|||+++|||+||+||++|+++|.+||++++
T Consensus 343 ~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~ 422 (1146)
T PRK12999 343 YAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422 (1146)
T ss_pred eEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcE
Confidence 99999999999999999999999999999999999998876 89999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 423 i~g-v~tn~~~l~~~~~~~~f~~~~~~t~~~~~~ 455 (1146)
T PRK12999 423 IRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDET 455 (1146)
T ss_pred Eec-ccCcHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 999 999999999999999999999999999983
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=756.59 Aligned_cols=462 Identities=32% Similarity=0.522 Sum_probs=421.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|++++++|+++|++++ +++.|.++.++++++||+++++|+.+. .+|.|.+.|+++
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v-----------~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~ 68 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSV-----------AIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNL 68 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHH
Confidence 68999999999999999999999998875 444577889999999999999987654 899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+|||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+|||+.
T Consensus 69 a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~-------------- 134 (472)
T PRK07178 69 AVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSE-------------- 134 (472)
T ss_pred HHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+..+. ...++|+|+|+++++|
T Consensus 135 -------~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~e 207 (472)
T PRK07178 135 -------GNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKH 207 (472)
T ss_pred -------cCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeE
Confidence 12678999999999999999999999999999999999999999998876542 3457999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++||+++|++|+++++++|+|++|++|||+++.+|++.++++++++|.+.|.++++++||.|+++|||++++ +|++||+
T Consensus 208 iev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~i 286 (472)
T PRK07178 208 IEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFM 286 (472)
T ss_pred EEEEEEEECCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|+++|+++|+|++++++++++|.|++. .+..+.++||+|
T Consensus 287 EiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 334 (472)
T PRK07178 287 EMNTRVQVEHTITEEITGIDIVREQIRIASGLPLSY--------------------------------KQEDIQHRGFAL 334 (472)
T ss_pred EEeCCcCCCccceeeeeCcCHHHHHHHHHCCCCCCC--------------------------------ccccCCcceEEE
Confidence 999999999999999999999999999999999863 123445679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|||..+|.|++|+|..+.+|++++||+++.+.+|..|+++|||++||||+||+||++|+++|.+||+++.|+|
T Consensus 335 ~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g- 413 (472)
T PRK07178 335 QFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQG- 413 (472)
T ss_pred EEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhhcc--CCCCchhHHHhhHHHHH
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA--ERPPWYLSVVGGALYKA 576 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~--~~~~~~~~~~~~a~~~~ 576 (2267)
++||++||++||.+|+|++|+++|+|||++ .+.+.. ..+...++++++|+..+
T Consensus 414 ~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (472)
T PRK07178 414 VKTTIPYYQEILRNPEFRSGQFNTSFVESH-PELTNYSIKRKPEELAAAIAAAIAA 468 (472)
T ss_pred ccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhhhcCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 444322 23333444555555444
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=746.10 Aligned_cols=446 Identities=34% Similarity=0.557 Sum_probs=413.9
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il 124 (2267)
.++||||||+|+|++|++++++||++|++++ +++++.+.++++.++||+++++++.....+|.|.+.|+
T Consensus 2 ~~~~~~vLi~~~geia~~ii~aa~~lG~~~v-----------~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~ 70 (467)
T PRK12833 2 PSRIRKVLVANRGEIAVRIIRAARELGMRTV-----------AACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAIL 70 (467)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHcCCeEE-----------EEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHH
Confidence 3679999999999999999999999998875 44446678889999999999887767778999999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
++|+++++|+|+|||||++|++.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 71 ~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~------------ 138 (467)
T PRK12833 71 AAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSD------------ 138 (467)
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~ 280 (2267)
..+.+.+++.++++++||||||||+.||||+|+++|++.+||.++|+.+.+++ ..+.+|||+|++++
T Consensus 139 ---------~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 139 ---------GVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred ---------cCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 12678999999999999999999999999999999999999999998876543 24579999999988
Q ss_pred ceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+|++|++++|++ +++++++|+|++||++||+++++|++.++++..++|.+.|.++++++||+|++||||++++++|++|
T Consensus 210 ~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~ 288 (467)
T PRK12833 210 RHIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288 (467)
T ss_pred EEEEEEEEeCCC-cEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEE
Confidence 999999999986 6889999999999999999999999889999999999999999999999999999999986568899
Q ss_pred EeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000092 361 FLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2267)
Q Consensus 361 fLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gh 440 (2267)
|||||||+|++|+++|+++|+|++++++++++|.|++. .+..+.++||
T Consensus 289 ~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~ 336 (467)
T PRK12833 289 FIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLRF--------------------------------AQGDIALRGA 336 (467)
T ss_pred EEEEECCCCcchhhhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccCcceE
Confidence 99999999999999999999999999999999999862 1233456799
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 441 ai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
++++||++|||..+|.|++|+|+.+.+|..|||++++.+..|..|+++|||++||||+||+||++|+++|.+||+++.|+
T Consensus 337 ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~ 416 (467)
T PRK12833 337 ALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRID 416 (467)
T ss_pred EEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcCCcccccccccchhhhhhhhhh
Q 000092 521 GEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556 (2267)
Q Consensus 521 G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~ 556 (2267)
| ++||++||++||++|+|++|+++|+|||+++++.
T Consensus 417 g-~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 451 (467)
T PRK12833 417 G-MKTTAPLHRALLADADVRAGRFHTNFLEAWLAEW 451 (467)
T ss_pred C-ccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhh
Confidence 9 8999999999999999999999999999976543
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-75 Score=744.64 Aligned_cols=446 Identities=32% Similarity=0.524 Sum_probs=413.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|++++++||++|++++ +++.+.+.+++++++||++|++|+.+ ..+|.|.+.|+++
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v-----------~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~ 68 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSV-----------AIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEI 68 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHH
Confidence 68999999999999999999999999885 44446667899999999999998754 4889999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||||+++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||+..
T Consensus 69 a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~------------- 135 (478)
T PRK08463 69 AKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEK------------- 135 (478)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999997650
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rh 282 (2267)
....+.+++.++++++||||||||+.|+||+||++|++.+||..+++.+..+ ...+.++||+|+++++|
T Consensus 136 -------~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~ 208 (478)
T PRK08463 136 -------LNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRH 208 (478)
T ss_pred -------cCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeE
Confidence 0135788999999999999999999999999999999999999999876543 34568999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|++|+++++++|+|++|++|||+++.+|++.+++++.++|++.|.++++++||.|++|+||++++ ++++||+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~i 287 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFM 287 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6889999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++|++||++||+|++++++++++|.+++. .+..+.++||+|
T Consensus 288 EiN~R~~~~~~~te~~tGidlv~~~ir~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (478)
T PRK08463 288 EMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILDL--------------------------------EQSDIKPRGFAI 335 (478)
T ss_pred EEECCcCCCcceeeHhhCCCHHHHHHHHHcCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999998752 122345679999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||+||||...|.|++|+|+.+..+..+++|+++.+..|..++++|||++||+|++|+||++|+++|.+||+++.|+|
T Consensus 336 ~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g- 414 (478)
T PRK08463 336 EARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG- 414 (478)
T ss_pred EEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhhc
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVR 558 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~ 558 (2267)
++||++||+.+|.+|+|++|+++|+|||+++++.+.
T Consensus 415 ~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 450 (478)
T PRK08463 415 IRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLE 450 (478)
T ss_pred ccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhcc
Confidence 999999999999999999999999999998887764
|
|
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=708.27 Aligned_cols=441 Identities=35% Similarity=0.604 Sum_probs=410.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|+.|++++++||++|++++ +++.+.+.++++.++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v-----------~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~ 69 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETV-----------AVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISA 69 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEE-----------EEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHH
Confidence 58999999999999999999999999985 4445666888999999999998776777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|+||||+++|++.++..+++.|+.|+||+++++..++||..+|++++++|||+|||+.
T Consensus 70 ~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~-------------- 135 (447)
T PRK05586 70 TVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSE-------------- 135 (447)
T ss_pred HHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+..+.. .++++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~e 208 (447)
T PRK05586 136 -------GEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKH 208 (447)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeE
Confidence 116788999999999999999999999999999999999999999987765432 357999999998899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|.+|++++++.++|+.++++||+++.+|++.+++++.++|.+.|.++++++||.|+++|||++++ +|++||+
T Consensus 209 i~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~i 287 (447)
T PRK05586 209 IEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFM 287 (447)
T ss_pred EEEEEEECCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||++++|+++++++|+|++++++++++|.|++. .+......||++
T Consensus 288 EvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~l~~--------------------------------~~~~~~~~g~a~ 335 (447)
T PRK05586 288 EMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLSI--------------------------------KQEDIKINGHSI 335 (447)
T ss_pred EEECCCCCCccceehhhCCCHHHHHHHHHcCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 112334569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|+|...|.|++|.++.+.+|..++||+++.+..|..++++|||++|+||++|+|+++|+++|.+||+++.|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g- 414 (447)
T PRK05586 336 ECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEG- 414 (447)
T ss_pred EEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEEC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
++||++||+.||.||+|++|+++|+|||+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 415 VNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred ccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 9999999999999999999999999999875
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-73 Score=722.01 Aligned_cols=422 Identities=30% Similarity=0.436 Sum_probs=352.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCchhhhhhh
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA--RIGVAEEVKAC 1663 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGA--Ri~~~e~~~~l 1663 (2267)
..|+|++.+++ +||+|+|+++|+||++||+|+.+++|+.++.++|.++|+|+|+|.+|||+ ||+ |++.++
T Consensus 44 ~~gvvtG~G~I------~G~~v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~--eg~~~l 115 (493)
T PF01039_consen 44 GDGVVTGIGKI------NGRPVVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLPLVYLVDSGGAFLRMQ--EGVESL 115 (493)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGG--GHHHHH
T ss_pred CCcEEEEEEee------CCeeEEEEEeccceecCCCCcccceeeehHHHHHHHcCCCcEEeccccccccccc--hhhhhh
Confidence 46899999877 99999999999999999999999999999999999999999999999999 777 777776
Q ss_pred ccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCc
Q 000092 1664 FEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKET 1743 (2267)
Q Consensus 1664 ~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~i 1743 (2267)
++++ .|..++++++..|
T Consensus 116 ~~~g---------------------------------------------------------------~i~~~~~~~~~~i 132 (493)
T PF01039_consen 116 MGMG---------------------------------------------------------------RIFRAIARLSGGI 132 (493)
T ss_dssp HHHH---------------------------------------------------------------HHHHHHHHHHTTS
T ss_pred hhhH---------------------------------------------------------------HHHHHHHHHhcCC
Confidence 4433 2223334444568
Q ss_pred eEEEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHH
Q 000092 1744 FTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGI 1821 (2267)
Q Consensus 1744 ptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~ 1821 (2267)
|+|++++|+|+|||||+++++|++||+++ +.|+|+||++|+.++|+++ +++++||+++|. +||++|++++||++++
T Consensus 133 P~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~vv~~~~Ge~~--~~~~lgG~~~h~~~sG~~d~v~~de~~a~ 210 (493)
T PF01039_consen 133 PQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPRVVESATGEEV--DSEELGGADVHAAKSGVVDYVVDDEEDAL 210 (493)
T ss_dssp -EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTHHHHHHHHSSCT--SHHHHHBHHHHHHTSSSSSEEESSHHHHH
T ss_pred CeEEEEccccccchhhcccccCccccCccceEEEeccccccccccCccc--cchhhhhhhhhcccCCCceEEEechHHHH
Confidence 99999999999999999999999999999 9999999999999999888 889999999986 8999999999999999
Q ss_pred HHHHHHHhcCC---CCCCCCCCcCCCCCCCCCC---CccCCC---CCCChHHHhcccccCCCCcccccccCCCceecccc
Q 000092 1822 SAILKWLSYVP---PHIGGALPIISPLDPPDRP---VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG 1892 (2267)
Q Consensus 1822 ~~i~~~LsylP---~~~~~~~p~~~~~d~~~r~---~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~ 1892 (2267)
+.+++||+|+| +++..++|..++.||+++. ..++|. ++||+|++|++ ++|.+||+|++++
T Consensus 211 ~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~~P~~~~~~yD~r~ii~~-----------i~D~~~f~E~~~~ 279 (493)
T PF01039_consen 211 AQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSIIPDDRRRPYDMRDIIAR-----------IVDDGSFFELKPG 279 (493)
T ss_dssp HHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGCS-SSTTS---HHHHHHH-----------HSGGGBEEEESTT
T ss_pred HHHHHhhcccccccccccCCCcccccCCCcccccccccccccccCCCCCcceeeEe-----------cccCCCceecccc
Confidence 99999999999 4444577888888988874 457887 89999999998 7999999999999
Q ss_pred ccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecC
Q 000092 1893 WARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANW 1972 (2267)
Q Consensus 1893 ~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~ 1972 (2267)
||+++|||+|||+|+|||||||+++. .+|+|++++++|++|||++|++|+||||+|+||
T Consensus 280 ~g~~~vtg~arl~G~pVGiian~~~~---------------------~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~dt 338 (493)
T PF01039_consen 280 YGKNIVTGFARLGGRPVGIIANNPRQ---------------------RAGALDPDGARKAARFIRLCDAFNIPLVTLVDT 338 (493)
T ss_dssp SSTTEEEEEEEETTEEEEEEEE-TTC---------------------GGGEB-HHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred ccCCeEEeeeeeCCcceEEEEecccc---------------------ccccCChHHHHHHHHHHHHHHhhCCceEEEeec
Confidence 99999999999999999999997542 378999999999999999999999999999999
Q ss_pred CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhh
Q 000092 1973 RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIE 2051 (2267)
Q Consensus 1973 ~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~ 2051 (2267)
+||++|.++|+.|++++||++++++++++||+|++|+ ++++||+|++|++. +++|+ +||||+|++|||+||++|+
T Consensus 339 pGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~--~~~~Gga~~am~~~~~~~~~--~~Awp~a~~~vm~~e~a~~ 414 (493)
T PF01039_consen 339 PGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIV--RKAYGGAYYAMCGRGYGPDF--VFAWPTAEIGVMGPEGAAS 414 (493)
T ss_dssp CEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEE--EEEEHHHHHHTTGGGGTTSE--EEEETT-EEESS-HHHHHH
T ss_pred ccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEe--CCccCcchhhhcccccchhh--hhhhhcceeeecChhhhhe
Confidence 9999999999999999999999999999999999999 68899999999877 88888 8999999999999999999
Q ss_pred hhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcc
Q 000092 2052 IKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIK 2131 (2267)
Q Consensus 2052 I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id 2131 (2267)
|+|+++.....+.+ .+..+..++++++++ +...++.++++.|.||
T Consensus 415 i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~---------------~~~~~~~~~a~~~~~D 459 (493)
T PF01039_consen 415 ILYRDELEAAEAEG--------------------ADPEAQRAEKIAEYE---------------DELSSPYRAASRGYVD 459 (493)
T ss_dssp HHTHHHHHHSCHCC--------------------HSHHHHHHHHHHHHH---------------HHHSSHHHHHHTTSSS
T ss_pred eeehhhhhhhhccc--------------------chhHHHHHHHHHHHH---------------HhcCCHHHHHhcCCCC
Confidence 99998843333222 011111333333333 3333578999999999
Q ss_pred cccCccchHHHHHHHHHHHH
Q 000092 2132 EVVDWDKSRSFFCRRLRRRV 2151 (2267)
Q Consensus 2132 ~ii~~~~~R~~~~~~L~r~l 2151 (2267)
+||+|++||++++.+|.-..
T Consensus 460 ~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 460 DIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp EESSGGGHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHHHH
Confidence 99999999999999988544
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=707.18 Aligned_cols=422 Identities=23% Similarity=0.265 Sum_probs=353.4
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
+|||+|++++ +||+|+|++||+||++||+|+.+.+|+.|++++|.++++|+|+|.||+||||+.+++.+++.
T Consensus 117 dgVVtG~G~V------~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~-- 188 (569)
T PLN02820 117 GGIVTGIGPV------HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDR-- 188 (569)
T ss_pred CeEEEEEEEE------CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchH--
Confidence 6899999977 99999999999999999999999999999999999999999999999999997555554431
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
.+++.+|.. +.+.|+. .||+|
T Consensus 189 ---------~~~g~if~~----------------------------------------~~~ls~~----------~VP~I 209 (569)
T PLN02820 189 ---------DHFGRIFYN----------------------------------------QARMSSA----------GIPQI 209 (569)
T ss_pred ---------hHHHHHHHH----------------------------------------HHHHhCC----------CCCEE
Confidence 122222211 0111111 27999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
++|+|+|+|||||.+.++|++||+++ +.|+|+||++|+.++|+++ ++++|||+++|. .||++|++++||.+++..+
T Consensus 210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~Ge~v--~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~ 287 (569)
T PLN02820 210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATGEEV--SAEDLGGADVHCKVSGVSDHFAQDELHALAIG 287 (569)
T ss_pred EEEeCCCChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcCccc--CHHHhCCHHHhcccccccccccCchHHHHHHH
Confidence 99999999999999999999999976 6799999999999999999 999999999999 6999999999999999999
Q ss_pred HHHHhcCCCCCCC---------CCCcCCCCCCCCCCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceecccc
Q 000092 1825 LKWLSYVPPHIGG---------ALPIISPLDPPDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG 1892 (2267)
Q Consensus 1825 ~~~LsylP~~~~~---------~~p~~~~~d~~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~ 1892 (2267)
|+||||||.++.. .+|..++.++.++...++|. ++||+|++|+. |+|++||+|+++.
T Consensus 288 R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~~~~~yD~r~vi~~-----------ivD~~sf~E~~~~ 356 (569)
T PLN02820 288 RNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIAR-----------IVDGSEFDEFKKN 356 (569)
T ss_pred HHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCCCCCCCCHHHHHHH-----------hcCCceeEEeccc
Confidence 9999999987631 11122233334455678888 89999999998 7999999999999
Q ss_pred ccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecC
Q 000092 1893 WARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANW 1972 (2267)
Q Consensus 1893 ~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~ 1972 (2267)
||+++|||+|||+|+||||||| +|+|++++++|++|||++|++++||||+|+|+
T Consensus 357 ~g~~iVtG~aRi~G~~VgvvAn--------------------------~g~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~ 410 (569)
T PLN02820 357 YGTTLVTGFARIYGQPVGIIGN--------------------------NGILFTESALKGAHFIELCAQRGIPLLFLQNI 410 (569)
T ss_pred CCCcEEEEEEEECCEEEEEEEE--------------------------CCccCHHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 9999999999999999999999 48999999999999999999999999999999
Q ss_pred CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhc-cccCCccceeecccccEEEeeCccchhh
Q 000092 1973 RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD-SRINSDHIEMYADRTAKGNVLEPEGMIE 2051 (2267)
Q Consensus 1973 ~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~-~~~n~d~~~~~A~p~A~~gvl~pegav~ 2051 (2267)
+||++|.++|..|+++++++++.++++++||+|++|+ |+++||+|.+|+ +.+++|+ +||||+|++|||+||++|+
T Consensus 411 pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~--g~a~G~g~~aM~g~~~~~d~--~~awp~A~i~vmg~e~aa~ 486 (569)
T PLN02820 411 TGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIV--GGSFGAGNYGMCGRAYSPNF--LFMWPNARIGVMGGAQAAG 486 (569)
T ss_pred CCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEE--CCcchHHHHHhcCcCCCCCE--EEECCCCeEEecCHHHHHH
Confidence 9999999999999999999999999999999999999 666776666665 6699999 9999999999999999999
Q ss_pred hhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcc
Q 000092 2052 IKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIK 2131 (2267)
Q Consensus 2052 I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id 2131 (2267)
|.|+.+... ..+.+++..+++++++++++++ |.+.+.+|....+.|.||
T Consensus 487 il~~~e~~~----------------~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~p~~aa~~~~vD 535 (569)
T PLN02820 487 VLAQIEREN----------------KKRQGIQWSKEEEEAFKAKTVE---------------AYEREANPYYSTARLWDD 535 (569)
T ss_pred HHHHHHhhh----------------hhhccccCCccHHHHHHHHHHH---------------HHHHhCCHHHHHHcCCcC
Confidence 999876210 1111111122222333433322 222345678889999999
Q ss_pred cccCccchHHHHHHHHHH
Q 000092 2132 EVVDWDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2132 ~ii~~~~~R~~~~~~L~r 2149 (2267)
+||+|++||+.|++.|+.
T Consensus 536 ~VIdP~dTR~~l~~~l~~ 553 (569)
T PLN02820 536 GVIDPADTRRVLGLCLSA 553 (569)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 999999999999999975
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=706.89 Aligned_cols=416 Identities=26% Similarity=0.399 Sum_probs=363.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
.+|+|++.+++ +||+|+|+++|+||++||+|+.+++|+.+++++|.++++|+|+|.+||||||+ |++.++++
T Consensus 69 ~dgvVtG~G~v------~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~--eg~~~l~~ 140 (512)
T TIGR01117 69 AEGVVTGYGTI------DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQ--EAVDALKG 140 (512)
T ss_pred CceEEEEEEEE------CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCcc--ccchhhhh
Confidence 37899999876 99999999999999999999999999999999999999999999999999998 77766532
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++++|.. +.+.||. ||+
T Consensus 141 ------------~~~~~~~----------------------------------------~~~~s~~-----------iP~ 157 (512)
T TIGR01117 141 ------------YGDIFYR----------------------------------------NTIASGV-----------VPQ 157 (512)
T ss_pred ------------HHHHHHH----------------------------------------HHHHcCC-----------CcE
Confidence 2223210 0112222 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCC-cceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a-~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++++|+|+||+||.+++||++||++++ .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++.
T Consensus 158 Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~v--~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~ 235 (512)
T TIGR01117 158 ISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEEV--TAEQLGGAMAHNSVSGVAHFIAEDDDDCIML 235 (512)
T ss_pred EEEEecCCCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCccc--chhhcchHHHhccccceeEEecCChHHHHHH
Confidence 9999999999999999999999999985 799999999999999999 999999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccce
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1896 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~ 1896 (2267)
+|+||||||+++.+.+|..++.|++.+. ..++|. ++||+|++|+. |+|++||+|+...|+++
T Consensus 236 ~r~~ls~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~-----------l~D~~sf~El~~~~g~~ 304 (512)
T TIGR01117 236 IRRLLSFLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITA-----------IVDNGDYLEVQPYYAPN 304 (512)
T ss_pred HHHHHHhCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHH-----------hCCCCceEEeeccCCCc
Confidence 9999999999988888866665665543 346887 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCC
Q 000092 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 1976 (2267)
Q Consensus 1897 vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~ 1976 (2267)
+|||+|||+|+||||||+|+++. ||+|++++++|++||+++|+++++|||+|+||+||+
T Consensus 305 vVtG~gri~G~~V~vvAnd~~~~---------------------~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G~~ 363 (512)
T TIGR01117 305 IITCFARINGQSVGIIANQPKVM---------------------AGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPGFL 363 (512)
T ss_pred EEEEEEEECCEEEEEEEeccccc---------------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcCcc
Confidence 99999999999999999976543 899999999999999999999999999999999999
Q ss_pred CchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1977 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1977 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
+|..+|+.|+++++++++++++++++|+|++|+ |+++||+|.++++. +++|+ +||||+|+++||+||++++|+||
T Consensus 364 ~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~--g~~~Gga~~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~ 439 (512)
T TIGR01117 364 PGVNQEYGGIIRHGAKVLYAYSEATVPKVTIIT--RKAYGGAYLAMCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFR 439 (512)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCCchHHHHHhccccCCCCE--EEEcCCCeEeecCHHHHHHHHhh
Confidence 999999999999999999999999999999998 77799999999754 89999 99999999999999999999998
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
++. ++ ..+++ ++.+++ ..+|.+...+|.+++++|+||+||+
T Consensus 440 ~~l-------------------~~---~~~~~--~~~~~~---------------~~~~~~~~~~~~~~a~~g~vD~VI~ 480 (512)
T TIGR01117 440 KDI-------------------KE---AKDPA--ATRKQK---------------IAEYREEFANPYKAAARGYVDDVIE 480 (512)
T ss_pred hhc-------------------cc---ccCHH--HHHHHH---------------HHHHHHhhcCHHHHHhcCCCCeeEC
Confidence 761 10 00111 111112 2234444567889999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~r 2149 (2267)
|++||++|+..|+.
T Consensus 481 P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 481 PKQTRPKIVNALAM 494 (512)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999975
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-70 Score=695.06 Aligned_cols=442 Identities=34% Similarity=0.588 Sum_probs=411.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|+++++++|++|++|+ +++.+.+.+++++++||+++.+++..+.++|.|++.|+++
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv-----------~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~ 69 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTV-----------AVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISA 69 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEE-----------EEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHH
Confidence 68999999999999999999999999986 4444666889999999999999777777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.++..|++.|+.|+||++++++.++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~-------------- 135 (449)
T TIGR00514 70 AEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSD-------------- 135 (449)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+..+ ....+++||+|+++++|
T Consensus 136 -------~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (449)
T TIGR00514 136 -------GLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRH 208 (449)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeE
Confidence 1167889999999999999999999999999999999999999999876543 23467999999999899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|.+|+++.++.+||+++++++|+++.+|++.+++++.++|++.+.++++++||+|++||||++++ +|++|||
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~vi 287 (449)
T TIGR00514 209 VEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFM 287 (449)
T ss_pred EEEEEEEcCCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999998889999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||++++|++++.++|+|++++++++++|.|++. .+..+..+||++
T Consensus 288 EiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (449)
T TIGR00514 288 EMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPLSL--------------------------------KQEDVVVRGHAI 335 (449)
T ss_pred EEECCCCCCcceeehhcCCcHHHHHHHHHCCCCCCC--------------------------------ccccCCCceEEE
Confidence 999999999999999999999999999999999863 112334569999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|||...|.|++|.+..+.+++.|+|++++.+.+|..+++++||++||||++|+||+||++++.+||++++|+|
T Consensus 336 ~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g- 414 (449)
T TIGR00514 336 ECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDG- 414 (449)
T ss_pred EEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIA 554 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~ 554 (2267)
++||++||++||.+++|.+|+++|+|||++++
T Consensus 415 ~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 415 IKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred ccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 99999999999999999999999999999765
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=678.25 Aligned_cols=440 Identities=34% Similarity=0.578 Sum_probs=406.5
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
+.||||||+|+|++|+++|++||++|++|+ +++++.+.+++++++||+++.+|++.+.++|.|.+.|++
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v-----------~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~ 70 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAI-----------AIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIIS 70 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEE-----------EEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHH
Confidence 458999999999999999999999999985 444566788999999999999988777889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+||+|+++|+..+++.|++.|+.|+||+++++..++||..++++++++|||+|||..
T Consensus 71 ~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~------------- 137 (445)
T PRK08462 71 AAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSD------------- 137 (445)
T ss_pred HHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~r 281 (2267)
..+.+.+++.++++++|||+||||+.|+||+|+++|+|.+||.+++..+..+ ...+++++|+|+++++
T Consensus 138 --------~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~ 209 (445)
T PRK08462 138 --------GALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPR 209 (445)
T ss_pred --------cccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCe
Confidence 1267889999999999999999999999999999999999999999876543 2345799999999889
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|+++++++|.+|++++++.++|+++++|+|.++++|+..++++..++|.+.+.++++++||.|++++||++++ ++++||
T Consensus 210 e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~v 288 (445)
T PRK08462 210 HIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYF 288 (445)
T ss_pred EEEEEEEECCCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 568999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
+|||||++++|+++++++|+|++++++++++|.+++.. ....+.||+
T Consensus 289 iEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~l~~~---------------------------------~~~~~~~~a 335 (445)
T PRK08462 289 MEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ---------------------------------ESIKLKGHA 335 (445)
T ss_pred EEEECCcCcCcceehhhhCCCHHHHHHHHHCCCCcccc---------------------------------cccCCceeE
Confidence 99999999999999999999999999999999987621 122356999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+.+|+++|+|. .|.|.+|.+..+.++...+++++..+..|..++.+|||++|++|++|+|+++|+++|.+||+++.|+|
T Consensus 336 ~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g 414 (445)
T PRK08462 336 IECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEG 414 (445)
T ss_pred EEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEEC
Confidence 99999999984 59999999999888888889999989999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
++||++||+++|.+|+|++|+++|+|||+++
T Consensus 415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 415 -IKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred -ccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 9999999999999999999999999999863
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=675.14 Aligned_cols=443 Identities=35% Similarity=0.611 Sum_probs=410.7
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|+.|+++++++|++||+++ +++.+.+.++++.++||+++.+++..+.++|.|.+.|+++
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv-----------~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~ 69 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTV-----------AVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISA 69 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEE-----------EEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHH
Confidence 68999999999999999999999999885 4444666788999999999988666777899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.++..|++.|+.|+||+++++..++||..++++++++|||+|||+.
T Consensus 70 a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~-------------- 135 (451)
T PRK08591 70 AEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSD-------------- 135 (451)
T ss_pred HHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999998999999999999999999999999999999999999999999853
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
..+++.+++.++++++|||||+||+.|+||+|+++|+|.+||.++++.+..+. ..+.++||+|+++++|
T Consensus 136 -------~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e 208 (451)
T PRK08591 136 -------GPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRH 208 (451)
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcE
Confidence 11678899999999999999999999999999999999999999999876542 2457999999998899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++++++|++|++++++.++|+.+++++++++.+|++.++++..++|.+.|.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~vi 287 (451)
T PRK08591 209 IEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFI 287 (451)
T ss_pred EEEEEEEcCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999999889999999999999999999999999999999985 7889999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||++++|++++.++|+|++++++++++|.|++. .+..+.++||++
T Consensus 288 EINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (451)
T PRK08591 288 EMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSI--------------------------------KQEDIVFRGHAI 335 (451)
T ss_pred EEECCCCccchhhhhhhCCCHHHHHHHHHCCCCCCC--------------------------------cccccCcCceEE
Confidence 999999999999999999999999999999998863 112334579999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++||++|+|...|.|++|.+..+.+|+.+++++++.+..|..++.++||++|+||++|+|+++|++++.++|++++|+|
T Consensus 336 ~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g- 414 (451)
T PRK08591 336 ECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDG- 414 (451)
T ss_pred EEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEEC-
Confidence 9999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2267)
++||++||++||.+|+|++|+++|+|||++++.
T Consensus 415 ~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~ 447 (451)
T PRK08591 415 IKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLAL 447 (451)
T ss_pred CCCCHHHHHHHhcCHhhhCCCcccHHHHhhhhc
Confidence 999999999999999999999999999998764
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-68 Score=621.45 Aligned_cols=416 Identities=26% Similarity=0.367 Sum_probs=360.5
Q ss_pred CceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhc
Q 000092 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACF 1664 (2267)
Q Consensus 1585 n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~ 1664 (2267)
|..|+|.++..+ +||.|++++||+|+++||+.+.+..|+.|+++.|...++|+|||.||||||++ +.+.++-
T Consensus 98 ps~sIvtg~g~i------~gr~~~vianDfTv~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~--~~~es~~ 169 (536)
T KOG0540|consen 98 PSGSIVTGRGRI------NGRKCFVIANDFTVKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLP--RQAESFA 169 (536)
T ss_pred CCCceEeccccc------cceEEEEEccCchhcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCc--chhhhcC
Confidence 447899999865 99999999999999999999999999999999999999999999999999999 5555440
Q ss_pred cccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCce
Q 000092 1665 EIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1665 ~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ip 1744 (2267)
...-|+|+|++. |...|+. ||
T Consensus 170 ---------d~~~~~~If~n~---------------------------------------n~mss~~-----------ip 190 (536)
T KOG0540|consen 170 ---------DSYHFGRIFYNQ---------------------------------------NVMSSGN-----------IP 190 (536)
T ss_pred ---------Chhhhheeeeec---------------------------------------ceeccCC-----------CC
Confidence 012377887653 2222332 69
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHH
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGIS 1822 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~ 1822 (2267)
+|++|+|+|++||||.+++.|.+||+++ +.||++||+.+++++|++| |.++|||++.|+ .+||+|..+.||..++.
T Consensus 191 qis~Img~Ct~gg~y~pAm~d~~~~vk~~s~lfl~gp~lVka~tnEev--sqedlgga~~hc~~sGv~~~~~~~dv~al~ 268 (536)
T KOG0540|consen 191 QISVIMGSCTAGGAYVPAMADETIMVKDTSTLFLAGPPLVKAATNEEV--SQEDLGGADLHCTTSGVADKAAKNDVHALC 268 (536)
T ss_pred ceeEEEecccCCceecccccceeEEecCcceEEecCCchhhhhcccee--ehhhcCCcceeeeeccchhhhhhccHHHHH
Confidence 9999999999999999999999999998 5899999999999999999 999999999998 69999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccc
Q 000092 1823 AILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWAR 1895 (2267)
Q Consensus 1823 ~i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~ 1895 (2267)
..|..++|+|.......+...+.||+++++ .++|. ++||+|++|++ ++|.+.|+|++++|++
T Consensus 269 ~~r~~~~~l~~~~~~~a~~p~~~~p~d~~~~eld~Iv~~~~~~~yd~r~vi~~-----------iVD~~~f~E~~~~y~~ 337 (536)
T KOG0540|consen 269 LLRLKVSNLPLSEIDLAIDPGTWDPPDYDAPELDGIVPLNLTKAYDVREVIAR-----------IVDGSRFFEFKPGYGD 337 (536)
T ss_pred HHHHHHccCCcccccccCCcccCCcccccchhhccccccccccccchHhHHHh-----------hcccchhhhhcccccc
Confidence 999999999986555555455567777654 56787 99999999998 7999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCC
Q 000092 1896 TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 1975 (2267)
Q Consensus 1896 ~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf 1975 (2267)
++|||||||+|+||||++|++++. ||+++.+++.|.+|||++|++++||||+|+|.+||
T Consensus 338 tlvtGfarlnG~tVgIvgnn~kf~---------------------~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~Gf 396 (536)
T KOG0540|consen 338 TLVTGFARLNGRTVGIVGNNPKFA---------------------GGVLFSESAVKGARFIELCDQRNIPLIFLQNITGF 396 (536)
T ss_pred ceeeeeeeECCEEEEEeccCchhc---------------------ccccchhhhhhhHHHHHHHHhcCCcEEEEEccCCc
Confidence 999999999999999999987765 99999999999999999999999999999999999
Q ss_pred CCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1976 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1976 ~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
++|...|..||.|+||+++++.++++||+|++|+ |..+||+|.+++..+.+|+ +||||+|+++|||.++||+|.|+
T Consensus 397 m~g~~~e~~gIaK~gAklv~a~a~akvpkITiit--~~syGG~y~m~sr~~~gd~--~yawP~A~IavmG~~~a~~Vi~q 472 (536)
T KOG0540|consen 397 MVGRAAEAGGIAKHGAKLVYAVACAKVPKITIIT--GGSYGGNYAMCSRGYSGDI--NYAWPNARIAVMGGKQAANVIFQ 472 (536)
T ss_pred cccchhhhhchhhhhhhhhhhhhhccCceEEEEe--cCccCCcccccccccCCce--eEEcccceeeeccccchhhhhhh
Confidence 9999999999999999999999999999999999 7789999997777799999 99999999999999999999876
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
-.. ++..+++++ +.+.+..|+-..++|+.|+||+
T Consensus 473 ~~~----------------------------e~a~~~~~~------------------~~E~f~npy~a~~Rg~~D~II~ 506 (536)
T KOG0540|consen 473 ITL----------------------------EKAVALKAP------------------YIEKFGNPYYAAARGWDDGIID 506 (536)
T ss_pred hhh----------------------------hhhhhhcch------------------HHHHhcCccHHHHhhccccccC
Confidence 530 011112222 1122234555667888899999
Q ss_pred ccchHHHHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLRRRV 2151 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~r~l 2151 (2267)
|.+||..|...|.-.+
T Consensus 507 p~~tR~vl~~~l~~~~ 522 (536)
T KOG0540|consen 507 PSDTRKVLGLDLQAAA 522 (536)
T ss_pred hhHhhHHHHHHHHHHh
Confidence 9999999998877554
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=702.10 Aligned_cols=439 Identities=33% Similarity=0.559 Sum_probs=406.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||||+|+|++|+++|+++|++|++++ +++.|.++.++++++||+++.+|++...++|.|.+.|+++|
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v-----------~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a 69 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSV-----------AVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAA 69 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEE-----------EEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHH
Confidence 6899999999999999999999998875 44457778899999999999998888888999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|+||+|+++|+..+++.|++.|+.|+||++++++.++||..+|++++++|||++||+.
T Consensus 70 ~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~--------------- 134 (1201)
T TIGR02712 70 KKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTG--------------- 134 (1201)
T ss_pred HHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhi 283 (2267)
.+++.+++.++++++||||||||..|+||+||++|++.+|+.++++.+.+.. .+.++|||+|+++++|+
T Consensus 135 -------lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~ev 207 (1201)
T TIGR02712 135 -------LLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHV 207 (1201)
T ss_pred -------ecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEE
Confidence 1678999999999999999999999999999999999999999999876532 24579999999988999
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+|++++|++|++++++.|||++||+++|+++++|++.+++++.++|.+.|.++++++||+|+++|||+++++++++||||
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lE 287 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLE 287 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEE
Confidence 99999999999999999999999999999999999889999999999999999999999999999999986568899999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+|++|+++++++|+|+++++++++.|.+++.- ...+ . ..+.||+++
T Consensus 288 VNpRlq~~~~lte~~tGvDlve~~ir~a~G~~~~~~------------------------~~~~-----~-~~~~g~ai~ 337 (1201)
T TIGR02712 288 VNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELPDFA------------------------SLNI-----S-LTPRGAAIE 337 (1201)
T ss_pred EECCcCcchhhHHHHhCCCHHHHHHHHHcCCCCCcc------------------------cccc-----c-cccceEEEE
Confidence 999999999999999999999999999999987520 0000 0 135799999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000092 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2267)
+|+++|||..+|.|++|.++.+.+++ +++++..+.+|+.|+++||+++|+||++|+||++|+++|.+||+++.|+| +
T Consensus 338 ~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G-~ 414 (1201)
T TIGR02712 338 ARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414 (1201)
T ss_pred EEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcC-c
Confidence 99999999999999999999888876 48888899999999999999999999999999999999999999999999 9
Q ss_pred ccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 524 RTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
.||++||++||.+++|++|+++|+|||+.
T Consensus 415 ~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 415 ETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred CcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 99999999999999999999999999984
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-59 Score=592.10 Aligned_cols=444 Identities=35% Similarity=0.575 Sum_probs=401.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+|||||+|+|+.|++++++++++||+++ ++.++.+..+.++++||+++.+|+.....+|.|.+.|+++
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v-----------~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~ 69 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTV-----------AIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEI 69 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999986 3444566788899999999999876667899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.++..+++.|+.++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~-------------- 135 (450)
T PRK06111 70 AKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGIT-------------- 135 (450)
T ss_pred HHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcC--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999732
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~----e~~~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.. .....+++||+|++|++|
T Consensus 136 -------~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e 208 (450)
T PRK06111 136 -------TNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRH 208 (450)
T ss_pred -------cCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcE
Confidence 015788999999999999999999999999999999999999999987643 233458999999999899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++++++++.+|+++.++.++|+++++|+++++.+|++.+++++.+++++.+.++++++||.|++++||++++ +|++||+
T Consensus 209 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~vi 287 (450)
T PRK06111 209 IEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFL 287 (450)
T ss_pred EEEEEEEcCCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEE
Confidence 999999999999999999999999999999999998888899999999999999999999999999999983 5569999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||+++++++++.++|+|++++++++++|.|++. .+......++++
T Consensus 288 EiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~l~~--------------------------------~~~~~~~~~~a~ 335 (450)
T PRK06111 288 EMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLSF--------------------------------TQDDIKRSGHAI 335 (450)
T ss_pred EEECCcCCcchhhHHHhCcCHHHHHHHHhcCCCCCC--------------------------------ccccCCcCceEE
Confidence 999999999999999999999999999999998752 111223458899
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
..+++++++. .+.|..|.+..++++..+++++++.+..|+.++.++++++|+|+++|+|+++|++++..+++.++|+|
T Consensus 336 ~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g- 413 (450)
T PRK06111 336 EVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG- 413 (450)
T ss_pred EEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeC-
Confidence 9999998874 57899999988877777789999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRV 557 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~ 557 (2267)
++||+++|+.||++|+|..|.++|+|||.++.++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (450)
T PRK06111 414 IKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLVKKS 448 (450)
T ss_pred ccCCHHHHHHHhcChhhcCCcccchHHhhhhhhhc
Confidence 99999999999999999999999999999876653
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=378.47 Aligned_cols=205 Identities=43% Similarity=0.703 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..++++++++|||++||+. ..+++.+++.++++++||||||||+.|+||+|+++|+|
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~---------------------~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~ 59 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGST---------------------VPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHN 59 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBES---------------------SSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESS
T ss_pred CHHHHHHHHHHCCCCcCCCCC---------------------CCCCCHHHHHHHHHhcCCceEEeecccccccccccccc
Confidence 899999999999999999876 12589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHH
Q 000092 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~ 327 (2267)
.++|.++++.++.+++ ..+++||+|+++++|++||+++|++|++++++.|||+.|+|+||.++++|++.++++.++
T Consensus 60 ~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~ 139 (211)
T PF02786_consen 60 EEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQ 139 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHH
T ss_pred hhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHH
Confidence 9999999999998876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 328 eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+|++.|.++++++||+|++||||++++++++|||||+|||+|++||++|++||+||+++|+++|+|.+|.
T Consensus 140 ~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 140 KLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred HHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999977899999999999999999999999999999999999999986
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=388.22 Aligned_cols=373 Identities=17% Similarity=0.182 Sum_probs=292.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|..++.++++++++||+++ ++ |.+++++..++||+++.++ |.|.+.|.++|++
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~-----------~~--d~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~ 60 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVIN-------MLDGDALRAVIER 60 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhhhCceEEEcC-------CCCHHHHHHHHHH
Confidence 69999999999999999999999986 55 5567888889999998873 5788999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
+++|+|+|+.+..+.. ....+++.|+. +.|+++++..+.||..+++++ +++|||+|+|..
T Consensus 61 ~~id~v~~~~e~v~~~--~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~---------------- 121 (380)
T TIGR01142 61 EKPDYIVPEIEAIATD--ALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYMF---------------- 121 (380)
T ss_pred hCCCEEEeccCccCHH--HHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceE----------------
Confidence 9999999986654322 33566778864 468999999999999999985 899999999876
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieVq 286 (2267)
+++.+++.++++++|||+|+||..|+||+|+++|++.+||..+++.+..... .++++||+|+++..|++|.
T Consensus 122 -------~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~ 194 (380)
T TIGR01142 122 -------ADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLL 194 (380)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEE
Confidence 7788999888999999999999999999999999999999999998764322 4579999999987899999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
++.+.+|++...... ...+..+.......|+. ++++..+++.+.+.++++++|+.|++++||+++ ++++||+|+||
T Consensus 195 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~--~~~~~viEinp 270 (380)
T TIGR01142 195 TVRHVDGNTTFCAPI-GHRQIDGDYHESWQPQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVK--GDEVIFSEVSP 270 (380)
T ss_pred EEEcCCCCEEEecCc-ceEEeCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CCcEEEEEeec
Confidence 888777775442211 12222222222345765 889999999999999999999999999999998 56899999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|+++++..+-..+|+|+++++++.++|.|++..+ ..+.++...+
T Consensus 271 R~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~~~~------------------------------------~~~~~~~~~i 314 (380)
T TIGR01142 271 RPHDTGMVTLISQGLSEFALHVRAILGLPIPGIP------------------------------------QLGPAASAVI 314 (380)
T ss_pred CCCCCceEEeeecCCCHHHHHHHHHcCCCCCCcc------------------------------------ccCCceEEEE
Confidence 9998754443446999999999999999886310 1122333445
Q ss_pred ccCCCCCCCCCCCCcccccc----ccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 447 TSEDPDDGFKPTSGKVQELS----FKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~----~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
.++. .|++..+. ....|++.+.+..++|.. ....+|||++.|+|.++|++++..+++.++|+
T Consensus 315 ~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~~~~~G~v~~~~~s~~~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 315 KAKV--------TGYSPAFRGLEKALSVPNTQVRLFGKPEAY----VGRRLGVALATAKSVEAARERAEEVAHAVEVR 380 (380)
T ss_pred Eccc--------ccccchhhHHHHHHcCCCCEEEECCCCcCC----CCCcCEEEEEecCCHHHHHHHHHHHHhhccCC
Confidence 5432 23222211 223467666665555543 33569999999999999999999999988875
|
This enzyme is an alternative to PurN (TIGR00639) |
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=435.12 Aligned_cols=377 Identities=18% Similarity=0.287 Sum_probs=302.9
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000092 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~ 113 (2267)
++.+|||||+|+|.+ +..+++++|++||+|+ .+..+.+....+.++||+.|..|
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi-----------~v~~np~~~~~~~~~aD~~y~~p---- 67 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVI-----------LVNSNPATIMTDPEMADKVYIEP---- 67 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEE-----------EEecchhhccCChhcCCEEEECC----
Confidence 356899999999974 4679999999999986 45444444456778999999886
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-----CCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-----EIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-----En~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtp 188 (2267)
.+.+.|.++++++++|+|+|++|... ........|++.|+.++||+++++..+.||..++++++++|+|+|
T Consensus 68 ----~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp 143 (1050)
T TIGR01369 68 ----LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVP 143 (1050)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCC
Confidence 35788999999999999999987522 222234578889999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000092 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2267)
Q Consensus 189 p~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2267)
||.. +++.+++.++++++|||+||||+.|+||+|+++|+|.+||.+++......++.
T Consensus 144 ~~~~-----------------------v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~ 200 (1050)
T TIGR01369 144 ESEI-----------------------AHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPI 200 (1050)
T ss_pred Ceee-----------------------cCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCC
Confidence 9876 78899999999999999999999999999999999999999999888877666
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc------ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCc
Q 000092 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR------RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2267)
Q Consensus 269 ~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr------r~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy 342 (2267)
.+++||+|++|.+|+++++++|.+|+++.+ |.+++ +..+.+..+|+..++++..++|++.|.+++++|||
T Consensus 201 ~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~ 276 (1050)
T TIGR01369 201 NQVLVEKSLAGWKEIEYEVMRDSNDNCITV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGI 276 (1050)
T ss_pred CcEEEEEcccCceEEEEEEEEeCCCCEEEE----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999998999999999999998876 55544 33556677898778889999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
+|.++|||+++++++++||+|||||+++++.+++++||+|+++.++++++|.++..++. +
T Consensus 277 ~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~atG~pl~~~~~~~alG~~l~~~~n--------~------------ 336 (1050)
T TIGR01369 277 EGGCNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKN--------P------------ 336 (1050)
T ss_pred cceeEEEEEEECCCCcEEEEEeecCcCcchhhhhHHhCCCHHHHHHHHHcCCCchhhcC--------C------------
Confidence 99999999999766889999999999999999999999999999999999999875421 0
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCC
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2267)
..| ++| ..|.|+.+.|. +.+|..+- +...+...++..-+. .+|||+++|+|
T Consensus 337 --------------i~g---------~~~-~~~~p~~~~~~-~k~p~~~~---~~~~~~~~~~~~~~k-~~G~v~~~g~~ 387 (1050)
T TIGR01369 337 --------------VTG---------TTP-ASFEPSLDYVV-VKIPRWDF---DKFAGVDRKLGTQMK-SVGEVMAIGRT 387 (1050)
T ss_pred --------------CcC---------cCc-cccCcCCCeEE-EEEEeCCC---CCCCcccCCcCcccc-eeeEEEEECCC
Confidence 001 222 23455555432 11111110 000111111111111 39999999999
Q ss_pred HHHHHHHHHHhhcc
Q 000092 503 RALAIANMVLGLKE 516 (2267)
Q Consensus 503 reeA~~~l~~AL~e 516 (2267)
++||+.++.++|+.
T Consensus 388 ~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 388 FEEALQKALRSLEI 401 (1050)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999986
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=428.20 Aligned_cols=308 Identities=20% Similarity=0.279 Sum_probs=263.4
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
..+||||+|+|.. ++.+++++|++||+++ ++..+++..+.+..+||+.|..|
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI-----------~v~~npetvstd~~~aD~~y~~p------ 635 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETI-----------MMNSNPETVSTDYDTSDRLYFEP------ 635 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEE-----------EEeCCCccccCCcccCCeEEEEe------
Confidence 4689999999963 5679999999999986 55556667777789999999985
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCc-------------CCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHH
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGH-------------ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQA 182 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~-------------~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~ 182 (2267)
.+.+.|+++|+++++|+|+|++|. +++++.+++ +.+.|+.++||+++++..++||..+++++++
T Consensus 636 --l~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~ 712 (1102)
T PLN02735 636 --LTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNE 712 (1102)
T ss_pred --CCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHH
Confidence 569999999999999999999884 333334444 4445899999999999999999999999999
Q ss_pred cCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000092 183 ANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2267)
Q Consensus 183 aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2267)
+|||+|||.. +++.+++.++++++||||||||+.|+||+|+++|+|.+||..+++.+
T Consensus 713 ~GIp~p~~~~-----------------------v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 713 LKIEQPKGGI-----------------------ARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred cCCCCCCeeE-----------------------eCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 9999999865 67889999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc-ccc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHc
Q 000092 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR-RHQ-KIIEEGPITVAPLETVKKLEQAARRLAKCV 340 (2267)
Q Consensus 263 ~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr-r~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aL 340 (2267)
....++.+++||+|+++++|++|++++|++|+++.....+..... -|. ......|+..+++++.++|.+.+.+++++|
T Consensus 770 ~~~~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L 849 (1102)
T PLN02735 770 VEVDPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRL 849 (1102)
T ss_pred HHhcCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 877767789999999988999999999998987754332211000 010 011235776799999999999999999999
Q ss_pred CceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 341 Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
||+|+++|||+++ ++|++||||+|||+++++|++++++|+|++++++++++|.+|..
T Consensus 850 ~~~G~~~vqf~v~-~dg~~yviEiNpR~s~t~p~~~katGidl~~~~~~~~~G~~l~~ 906 (1102)
T PLN02735 850 NVCGLMNCQYAIT-PSGEVYIIEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLKD 906 (1102)
T ss_pred CCcceeeEEEEEc-CCCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhh
Confidence 9999999999997 36889999999999999999999999999999999999999864
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=393.56 Aligned_cols=380 Identities=16% Similarity=0.186 Sum_probs=303.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.+.+||+|+|+|..+..++++++++||+++ ++ |.+++++..++||+++.. +|.|.+.+.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi-----------~l--d~~~~apa~~~AD~~~v~-------~~~D~~~l~~ 79 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVK-----------VL--DPLEDCPASSVAARHVVG-------SFDDRAAVRE 79 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceeeeC-------CCCCHHHHHH
Confidence 346799999999999999999999999986 44 556788999999998875 5688999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|++ +|.|.....+. +....+.+++.|+. ++|+++++..++||..+|++++++|||+|||..
T Consensus 80 ~a~~--~dvIt~e~e~v--~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~------------- 141 (577)
T PLN02948 80 FAKR--CDVLTVEIEHV--DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFME------------- 141 (577)
T ss_pred HHHH--CCEEEEecCCC--CHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEE-------------
Confidence 9998 68887543222 23455788888876 479999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie 284 (2267)
+.+.+++.++++++|||+||||..|| ||+|+++|++.+|+.++++.+... +.+++||+|+++.+|++
T Consensus 142 ----------v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~--~~~vlvEefI~~~~Eis 209 (577)
T PLN02948 142 ----------IDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF--ERGLYAEKWAPFVKELA 209 (577)
T ss_pred ----------eCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC--CCcEEEEecCCCCeEEE
Confidence 67888988889999999999999887 799999999999999999887532 45899999999889999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
|.++++.+|++.++ +..+..++.+.......|+. +++++.+++++.|.+++++||++|+++|||++++ +|.+||+||
T Consensus 210 V~v~r~~~G~i~~~-p~~E~~~~~~~~~~~~~Pa~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EI 286 (577)
T PLN02948 210 VMVARSRDGSTRCY-PVVETIHKDNICHVVEAPAN-VPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEV 286 (577)
T ss_pred EEEEECCCCCEEEe-cCcccEEECCeeEEEEECCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEE
Confidence 99999888887764 33455566665555667886 8899999999999999999999999999999984 678999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~a 444 (2267)
|||++++..++...+++|+.+++++.++|.|++.. ....++++..
T Consensus 287 npRpg~sGh~t~ea~~~s~fe~~vRa~lGlpl~~~-----------------------------------~~~~~~A~m~ 331 (577)
T PLN02948 287 APRPHNSGHYTIEACYTSQFEQHLRAVLGLPLGDT-----------------------------------SMKVPAAIMY 331 (577)
T ss_pred eCCCCCCCceeeecccCCHHHHHHHHHcCCCCCCc-----------------------------------cccCCcEEEE
Confidence 99999765566668999999999999999998631 0112456777
Q ss_pred EEccCCCC-CCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 445 RVTSEDPD-DGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 445 RI~aEdp~-~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
.+..++.. .++.+....+.. ....|++.+.+..+++.+ ....+|||+++|+|++++++++..+++.+.+
T Consensus 332 nl~g~~~~~~g~~~~~~~~~~--~~~~p~~~v~~ygk~~~r----~~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~ 401 (577)
T PLN02948 332 NILGEDEGEAGFRLAHQLMGR--ALNIPGASVHWYGKPEMR----KQRKMGHITVVGPSAAEVEARLDQLLAEESA 401 (577)
T ss_pred EEeccccccccccchhhHHHH--HhhCCCCEEEEecCCCCC----CCCeeEEEEEecCCHHHHHHHHHHHHhhhcc
Confidence 77776522 233333211211 122355555554444433 2257999999999999999999999986654
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=369.27 Aligned_cols=379 Identities=16% Similarity=0.173 Sum_probs=286.0
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
+||||+|+|..+..++++++++||+++ .+ |.+++++...+||+++.++ +.|.+.++++|+
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~ 72 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSHVID-------MLDGDALRAVIE 72 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchHHhhhheEECC-------CCCHHHHHHHHH
Confidence 589999999999999999999999985 44 4456677788999988774 467899999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
++++|+|+|+.+.... .....+++.|+.+ .|++++++.+.||..+|+++ +++|||+|+|..
T Consensus 73 ~~~id~vi~~~e~~~~--~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~--------------- 134 (395)
T PRK09288 73 REKPDYIVPEIEAIAT--DALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRF--------------- 134 (395)
T ss_pred HhCCCEEEEeeCcCCH--HHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceE---------------
Confidence 9999999998654332 2345567778765 49999999999999999998 489999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieV 285 (2267)
+++.+++.++++++|||+|+||..|+||+|+++|+|.+|+.++++.+..... +.+++||+|++++.|+++
T Consensus 135 --------~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv 206 (395)
T PRK09288 135 --------ADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITL 206 (395)
T ss_pred --------ECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEE
Confidence 7899999999999999999999999999999999999999999998764332 368999999997789999
Q ss_pred EEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeC
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELN 365 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEIN 365 (2267)
.++.+..|....+...+- .+..........|+. ++++..+++.+.+.+++++||++|+.++||+++ ++++||+|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~--~~~~~viEin 282 (395)
T PRK09288 207 LTVRAVDGGTHFCAPIGH-RQEDGDYRESWQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVK--GDEVYFSEVS 282 (395)
T ss_pred EEEEcCCCCEEEecCccc-EEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCeEEEEEec
Confidence 999987655554432210 111111122235665 788999999999999999999999999999998 4589999999
Q ss_pred ccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEE
Q 000092 366 PRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVR 445 (2267)
Q Consensus 366 pRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aR 445 (2267)
||+++....+-..+|+|+++++++.++|.|++.+. ..+.+..+.
T Consensus 283 pR~~~~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~------------------------------------~~~~~~~~~ 326 (395)
T PRK09288 283 PRPHDTGMVTLISQNLSEFELHARAILGLPIPDIR------------------------------------LYSPAASAV 326 (395)
T ss_pred CCCCCCcceeeeecccCHHHHHHHHHcCCCCCccc------------------------------------ccCCceeEE
Confidence 99998754443345999999999999998874210 011122233
Q ss_pred EccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 446 VTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 446 I~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+.++.+.. .....|. ... ...+++.+.+.. .........+|||++.|+|.++|++++..+++.++|.|
T Consensus 327 ~~~~~~~~-~~~i~~~-~~~--~~~~g~~~~~~~----k~~~~~~~~lG~v~~~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 327 ILAEGESA-NPSFDGL-AEA--LAVPGTDVRLFG----KPEIRGGRRMGVALATGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred Eecccccc-ccchhhH-HHH--hcCCCCEEEEec----CCCCCCCCeeEEEEeecCCHHHHHHHHHHHHhheeecc
Confidence 44433111 0001121 111 123454332211 11222345699999999999999999999999999988
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=409.43 Aligned_cols=309 Identities=17% Similarity=0.268 Sum_probs=263.6
Q ss_pred CCCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCC
Q 000092 45 KKPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTN 113 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~ 113 (2267)
++.+|||||+|+|++ +..+++++|++||+|+ .+..+...-.....+||+++..|
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi-----------~vd~np~t~~~~~~~aD~~yi~p---- 84 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVV-----------LINSNPATIMTDPETADRTYIAP---- 84 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEeCC----
Confidence 456899999999986 5579999999999986 44222222223446899988766
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtp 188 (2267)
.+.+.+.++++++++|+|+|++|... ++... ...|++.|+.++|++++++..+.||..++++++++|||+|
T Consensus 85 ----~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp 160 (1102)
T PLN02735 85 ----MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTP 160 (1102)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCC
Confidence 34678999999999999999876433 33111 2456788999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC
Q 000092 189 PWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP 267 (2267)
Q Consensus 189 p~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~ 267 (2267)
+|.. +.+.+++.++++++| |||||||+.|+||+|+.+|+|.+||..+++.+....+
T Consensus 161 ~~~~-----------------------v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~ 217 (1102)
T PLN02735 161 PSGI-----------------------ATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASI 217 (1102)
T ss_pred CeeE-----------------------eCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCC
Confidence 9865 678899999999999 9999999999999999999999999999998877677
Q ss_pred CCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc------ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 000092 268 GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR------RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2267)
Q Consensus 268 ~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr------r~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLG 341 (2267)
.++++||+|+.|.+|++|++++|..|+++.+ |++.. +....+..+|+..++++..++|+++|.+++++||
T Consensus 218 ~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v----~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLg 293 (1102)
T PLN02735 218 TSQVLVEKSLLGWKEYELEVMRDLADNVVII----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIG 293 (1102)
T ss_pred CCeEEEEEecCCCeEEEEEEEEcCCCCEEEE----eeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7899999999998999999999988888765 43332 1234566689877999999999999999999999
Q ss_pred c-eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 342 Y-VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 342 y-~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
+ .|.++|||++++++|++||+|+|||+++++++++++||+|+++.++++|+|.+|+.+
T Consensus 294 i~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~s~atG~~~a~~~~klalG~~l~~~ 352 (1102)
T PLN02735 294 VECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQI 352 (1102)
T ss_pred CCcCceEEEEEEECCCCcEEEEEecCCCCCcchhhhhhhCCCHHHHHHHHHCCCChhhh
Confidence 9 599999999997678999999999999999999999999999999999999999765
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=363.34 Aligned_cols=364 Identities=20% Similarity=0.278 Sum_probs=283.8
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+++|+|+|+|+.+..++++++++||+++ +. |.+++++..++||+++.. +|.|.+.+.+++
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~-----------~~--d~~~~~pa~~~ad~~~~~-------~~~D~~~l~~~a 61 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVI-----------VL--DPDPDSPAAQVADEVIVA-------DYDDVAALRELA 61 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchhHhCceEEec-------CCCCHHHHHHHH
Confidence 5789999999999999999999999986 44 556778889999999886 468899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+ .+|+|.+.+. .......+.+++. ..++|+++++..++||..+|++++++|||+|||..
T Consensus 62 ~--~~dvit~e~e--~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 120 (372)
T PRK06019 62 E--QCDVITYEFE--NVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAV--------------- 120 (372)
T ss_pred h--cCCEEEeCcC--CCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceE---------------
Confidence 8 5688875433 3333344455555 35789999999999999999999999999999986
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+.+.+++.++++++|||+|+||+.|| ||+|+++|++.+|+..+++.+. ..+++||+|+++++|++|.
T Consensus 121 --------v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~I~~~~E~sv~ 188 (372)
T PRK06019 121 --------VDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLG----SVPCILEEFVPFEREVSVI 188 (372)
T ss_pred --------eCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecCCCCeEEEEE
Confidence 78899999999999999999999975 9999999999999999988762 4689999999988999999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
++.+.+|+++.+... ...++.+.......|+. +++++.+++++.+.+++++|||+|+.+|||+++ ++|++||+|+||
T Consensus 189 ~~~~~~G~~~~~p~~-e~~~~~gi~~~~~~pa~-~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~-~dg~~~v~Einp 265 (372)
T PRK06019 189 VARGRDGEVVFYPLV-ENVHRNGILRTSIAPAR-ISAELQAQAEEIASRIAEELDYVGVLAVEFFVT-GDGELLVNEIAP 265 (372)
T ss_pred EEECCCCCEEEeCCc-ccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCccceeEEEEEEc-CCCeEEEEEecC
Confidence 999988988765322 23344333333457875 888999999999999999999999999999998 367799999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
|++++..+|...+|+|+.+.+++..+|.|++.. ...+.++..-|
T Consensus 266 R~~~sg~~t~~~~~~sqf~~~ira~~Glpl~~~------------------------------------~~~~~~~m~ni 309 (372)
T PRK06019 266 RPHNSGHWTIEACSTSQFEQHLRAILGLPLGTT------------------------------------RLLSPAVMVNL 309 (372)
T ss_pred CccCcccEEhhhcCccHHHHHHHHHcCCCCCCc------------------------------------cccCceEEEEE
Confidence 999988888899999999999999999998621 11223455555
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhc
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2267)
..++. . ..+... ....|++.+++.-++.. .....+|||.+.|+|.+++++++..+..
T Consensus 310 lg~~~---~--~~~~~~---~~~~~~~~~~~ygk~~~----~~~rk~Ghv~~~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 310 LGDDW---L--EPRWDA---LLALPGAHLHLYGKAEA----RPGRKMGHVTVLGDDVEALLAKLEALAP 366 (372)
T ss_pred ECchh---h--hhHHHH---HhhCCCCEEEECCCCCC----CCCCceEEEEeecCCHHHHHHHHHHHHh
Confidence 54321 0 011111 11224433322211111 1223499999999999999999988876
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=401.85 Aligned_cols=308 Identities=19% Similarity=0.279 Sum_probs=262.2
Q ss_pred CCccEEEEECchHHH-----------HHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGMAA-----------VKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~~A-----------v~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
..++||||+|+|.+. ..++++++++||+|+ ++..+........++||+.+..|
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi-----------~v~~~p~~~~~~~~~aD~~y~~p----- 68 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVV-----------LVNSNPATIMTDPEMADATYIEP----- 68 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEE-----------EEcCCcccccCCcccCCEEEECC-----
Confidence 458999999999864 469999999999986 44333222234556899998876
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCc--h--HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPE--L--PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~~--l--a~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
.+.+.|.++++++++|+|+|+.|... .+.. + ...|++.|+.++||+++++..+.||..++++++++|+|+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~ 145 (1066)
T PRK05294 69 ---ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPR 145 (1066)
T ss_pred ---CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCC
Confidence 34799999999999999999987543 2211 1 23577789999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000092 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2267)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2267)
|.. +++.+++.++++++|||+||||+.|.||+|+++|++.+||.+++++.....+..
T Consensus 146 ~~~-----------------------v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~ 202 (1066)
T PRK05294 146 SGI-----------------------AHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVT 202 (1066)
T ss_pred eee-----------------------eCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCC
Confidence 876 788999999999999999999999999999999999999999998776666667
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc-----c-ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR-----H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr-----~-qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~ 343 (2267)
+++||+|++|.+|+++.+++|++|+++.+. ..++. | ..++..+|+..++++..+++++.|.+++++|||+
T Consensus 203 ~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~----~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~ 278 (1066)
T PRK05294 203 EVLIEESLLGWKEYEYEVMRDKNDNCIIVC----SIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVE 278 (1066)
T ss_pred eEEEEEcccCceEEEEEEEEcCCCCEEEEe----eeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999989999999999999988763 33221 2 3345567886688889999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
|+++|||+++++++++||+|+|||++++..+++.++|+|+....+++++|.++..+
T Consensus 279 ~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m 335 (1066)
T PRK05294 279 TGGCNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI 335 (1066)
T ss_pred cCceEEEEEEECCCCcEEEEEeecCCCcceeeeeHhhCCCHHHHHHHHHcCCChHHh
Confidence 99999999997678899999999999999998999999999999999999988654
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=344.28 Aligned_cols=293 Identities=22% Similarity=0.297 Sum_probs=247.9
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
+|+|+|+|+.+..++++++++||+|+ ++ |.+++++..++||+++.. +|.|.+.|.+++++
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~-----------~~--d~~~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~ 60 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVH-----------VL--DPDANSPAVQVADHVVLA-------PFFDPAAIRELAES 60 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--CCCCCCChhHhCceeEeC-------CCCCHHHHHHHHhh
Confidence 48999999999999999999999986 45 566788999999998844 57789999999986
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
. |.|.+.+++.+ ......+++.|+. ++|++++++.++||..++++++++|||+|+|..
T Consensus 61 ~--dvit~e~e~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 118 (352)
T TIGR01161 61 C--DVITFEFEHVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLV----------------- 118 (352)
T ss_pred C--CEEEeCcCcCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccE-----------------
Confidence 4 77765543322 2245677788865 569999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+.+.+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++... ..++++|+|+++++|++|.++
T Consensus 119 ------~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~I~~~~E~sv~~~ 188 (352)
T TIGR01161 119 ------IKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG----DRECIVEEFVPFERELSVIVA 188 (352)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC----CCcEEEEecCCCCeEEEEEEE
Confidence 77889999999999999999999987 9999999999999999888753 358999999997799999999
Q ss_pred EcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccC
Q 000092 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2267)
.+.+|++..+ ......++.+.......|+. +++++.+++++.+.++++++||+|++++||++++ +|++||+|+|||+
T Consensus 189 ~~~~G~~~~~-~~~~~~~~~g~~~~~~~p~~-~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg~~~v~EinpR~ 265 (352)
T TIGR01161 189 RSADGETAFY-PVVENIHQDGILRYVVAPAA-VPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DGRLLINELAPRV 265 (352)
T ss_pred EcCCCCEEEE-CCcccEEeCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEecCCC
Confidence 8888886654 33333344333333456774 7888899999999999999999999999999983 6779999999999
Q ss_pred cCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 369 qgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+++..++...+++|..+.+++.++|.|++
T Consensus 266 ~~sg~~~~~~~~~s~f~~~~ra~~g~~l~ 294 (352)
T TIGR01161 266 HNSGHYTLDGCSTSQFEQHLRAILGLPLG 294 (352)
T ss_pred CCcCcCchhhccccHHHHHHHHHcCCCCC
Confidence 99888888899999999999999999986
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=386.62 Aligned_cols=309 Identities=17% Similarity=0.286 Sum_probs=258.8
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
+.++||||+|+|.+ +..++++++++||+++ .+..+...-.....+||..|..|
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-----------~v~~np~~~~~d~~~ad~~y~ep----- 68 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-----------LVNPNPATIMTDPAPADTVYFEP----- 68 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-----------EEeCCcchhhcCcccCCeeEECC-----
Confidence 56899999999986 5689999999999986 44222111111224788887765
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCC-CCCch----HHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHAS-EIPEL----PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~~l----a~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
.+.+.+.++++++++|+|+|++|... .+... ...|++.|+.++||+++++..+.||..++++++++|+|+|+
T Consensus 69 ---~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~ 145 (1068)
T PRK12815 69 ---LTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPE 145 (1068)
T ss_pred ---CCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCC
Confidence 35799999999999999999876443 22111 12467789999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000092 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2267)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2267)
|.. +++.+++.++++++|||+||||+.|.||+|+.+|+|.+||.++++......+..
T Consensus 146 ~~~-----------------------v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~ 202 (1068)
T PRK12815 146 SEI-----------------------VTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIH 202 (1068)
T ss_pred cee-----------------------eCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCC
Confidence 876 788999999999999999999999999999999999999999998887666667
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccc------eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ------KIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q------KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~ 343 (2267)
+++||+|++|.+|++|.+++|.+|+++.+ |...+.+. ..+..+|+..++++..+++++.|.+++++||++
T Consensus 203 ~vLVEe~I~G~~E~sv~v~rD~~g~~~~~----~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~ 278 (1068)
T PRK12815 203 QCLLEESIAGWKEIEYEVMRDRNGNCITV----CNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVV 278 (1068)
T ss_pred eEEEEEccCCCeEEEEEEEEcCCCCEEEE----EeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999998999999999999998876 33333221 123346886688899999999999999999999
Q ss_pred eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000092 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2267)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip 400 (2267)
|.++|||+++++++++|++|+|||++++..++..++|+++.+..+++++|.+|+.|+
T Consensus 279 G~~~vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~pl~~~~~~~alG~~l~ei~ 335 (1068)
T PRK12815 279 GGCNIQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPIAKIAAKLAVGYTLNELK 335 (1068)
T ss_pred CceEEEEEEECCCCcEEEEEEecCcccchhhhhHhhCCcHHHHHHHHHcCCChHHhc
Confidence 999999999976678999999999999999999999999999999999999987653
|
|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=349.70 Aligned_cols=381 Identities=15% Similarity=0.139 Sum_probs=275.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCC-ChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRIN-AEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~-a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|||+|||++.+..+..++++++++||+++ ++....+.... ......+|....++ +.|.+.+++
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v---------~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~ 64 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPI---------AVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVE 64 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEE---------EEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHH
Confidence 78999999999999999999999999885 22222111111 12233344333332 256899999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHH-cCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLST-KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~-~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++++|+|+||..... .++..+.+ .|++ .|++++++..++||..|+++++++|||+|++..
T Consensus 65 ~~~~~~~d~vi~~~e~~~---~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~------------ 128 (416)
T PRK07206 65 FLRKLGPEAIIAGAESGV---ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQIN------------ 128 (416)
T ss_pred HHHHcCCCEEEECCCccH---HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEe------------
Confidence 999999999999853322 23344433 4543 389999999999999999999999999999876
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCC---cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh-----CCCCcEEEEEe
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGY---PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE-----VPGSPIFIMKV 276 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGy---PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e-----~~~~~I~VEey 276 (2267)
+.+.+++.++++.+|| |+||||..|+||+||++|+|.+|+.++++++... ..+.+++||+|
T Consensus 129 -----------~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~ 197 (416)
T PRK07206 129 -----------TADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEY 197 (416)
T ss_pred -----------cCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEc
Confidence 6788999999999998 9999999999999999999999999999987643 12468999999
Q ss_pred ccccceeeEEEEEcCCCCEEEe--cccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce-eeeEEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAAL--HSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l--~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~-Ga~tVEfl~d 353 (2267)
++| .|++|+++.. +|+++.. ..+..........+.........+....+++.+.+.++++++|+. |++|+||+++
T Consensus 198 i~G-~E~sv~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~ 275 (416)
T PRK07206 198 LIG-TEYVVNFVSL-DGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLT 275 (416)
T ss_pred ccc-EEEEEEEEEE-CCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEc
Confidence 987 7999998874 3665432 111100000111111111111134667889999999999999995 9999999998
Q ss_pred ccCCcEEEeeeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccc
Q 000092 354 METGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQ 431 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~ 431 (2267)
++++++||||||++|.. .+++.++|+|+.++.++.++|.+....+ .
T Consensus 276 --~~g~~liEin~R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~------------------------------~ 323 (416)
T PRK07206 276 --ADGPRLIEIGARLDGGLHPDVARLATGDSQLDATVESLADPDVFRET------------------------------L 323 (416)
T ss_pred --CCCCEEEEECCccCCCCccchhhhhcCcCHHHHHHHHHhCchhhccc------------------------------c
Confidence 56699999999999874 5678999999999999999997642100 0
Q ss_pred cCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCcccccCC--cccEEEEEEeCCHH
Q 000092 432 AESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEFSD--SQFGHVFAFGESRA 504 (2267)
Q Consensus 432 ~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~~D--s~~g~via~G~~re 504 (2267)
.....+.+|+....+.+ |..|++.++. +...|+| ...+.++.|+.|....| +.+|+|++.|+|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~ 395 (416)
T PRK07206 324 REGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKE 395 (416)
T ss_pred CCCcChhhceEEEEEec--------CCCceEeCCccHHHHHhCCchhheEEecCCCCCccCceecCCCCEEEEEEcCCHH
Confidence 01112234443333332 3467777664 2334555 45667889999988766 45999999999999
Q ss_pred HHHHHHHH
Q 000092 505 LAIANMVL 512 (2267)
Q Consensus 505 eA~~~l~~ 512 (2267)
++.+....
T Consensus 396 ~~~~~~~~ 403 (416)
T PRK07206 396 QLWQDYEK 403 (416)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=380.99 Aligned_cols=305 Identities=21% Similarity=0.353 Sum_probs=256.8
Q ss_pred ccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 48 IHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
-+||||+|.|.. ++.++++++++||+++ .+..+....+.....+|+.+..|
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI-----------~v~~npetvs~d~~~~D~ly~ep------- 615 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETI-----------MINYNPETVSTDYDTSDRLYFEP------- 615 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEE-----------EEecCCccccccccccceEEEec-------
Confidence 479999999975 7899999999999986 44223333344566899887654
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCcc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~ 196 (2267)
.+.+.++++++++++|+|++++|.... ..++..|++.|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 -~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~---- 689 (1050)
T TIGR01369 616 -LTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKT---- 689 (1050)
T ss_pred -CCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEE----
Confidence 348999999999999999999875442 24678888999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000092 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2267)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEey 276 (2267)
+.+.+++.++++++|||+||||+.++||+|+.+|+|.+||..+++++....++.+++||+|
T Consensus 690 -------------------v~s~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeef 750 (1050)
T TIGR01369 690 -------------------ATSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKY 750 (1050)
T ss_pred -------------------ECCHHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeec
Confidence 7899999999999999999999999999999999999999999999887777789999999
Q ss_pred ccccceeeEEEEEcCCCCEEEecccccccccc--cc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d 353 (2267)
+++++|++|++++|+ |+++.....+. +.+. |. ......|+..++++..++|.+.+.++++++|+.|++++||+++
T Consensus 751 I~~G~E~~Vd~l~d~-g~v~i~~i~e~-~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~ 828 (1050)
T TIGR01369 751 LEDAVEVDVDAVSDG-EEVLIPGIMEH-IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK 828 (1050)
T ss_pred CCCCeEEEEEEEEeC-CEEEEEEEEEe-ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE
Confidence 997799999999986 55544321110 0010 10 1122346666888999999999999999999999999999998
Q ss_pred ccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
++++|+||+|||++++.|+++.++|+|++++.+++++|.++..+
T Consensus 829 --~~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~~~~lG~~l~~~ 872 (1050)
T TIGR01369 829 --DGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEEL 872 (1050)
T ss_pred --CCeEEEEEEeCCCCchHHHHHHHHCCCHHHHHHHHHcCCCcccc
Confidence 68999999999999999999999999999999999999987643
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=340.99 Aligned_cols=381 Identities=18% Similarity=0.204 Sum_probs=265.3
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|..+..+++++++.|+.+. ++..+ +.+....++....+.. ++.|.+.|+++|++
T Consensus 2 kiliiG~G~~~~~l~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~~-----~~~d~~~l~~~~~~ 62 (423)
T TIGR00877 2 KVLVIGNGGREHALAWKLAQSPLVKY---------VYVAP-----GNAGTARLAKNKNVAI-----SITDIEALVEFAKK 62 (423)
T ss_pred EEEEECCChHHHHHHHHHHhCCCccE---------EEEEC-----CCHHHhhhcccccccC-----CCCCHHHHHHHHHH
Confidence 89999999999999999999986542 11222 1222223333222211 55789999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
+++|+|+++.+... ...+++.+++.|++++||++++++.+.||..++++++++|||+|+|..
T Consensus 63 ~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~----------------- 124 (423)
T TIGR00877 63 KKIDLAVIGPEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEV----------------- 124 (423)
T ss_pred hCCCEEEECCchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEE-----------------
Confidence 99999999854211 123567888899999999999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---CCCcEEEEEeccccceeeE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---PGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---~~~~I~VEeyI~g~rhieV 285 (2267)
+.+.+++.++++++||| +|+||..|+||+|+++|++.+|+.++++++.... .+.+++||+|++| .|++|
T Consensus 125 ------~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv 197 (423)
T TIGR00877 125 ------FTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSL 197 (423)
T ss_pred ------ECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEE
Confidence 77899999999999999 9999999999999999999999999999876552 2457999999998 79999
Q ss_pred EEEEcCCCCEEEecccccccccccceE------------EEecCCCCCCHHHHHHH-HHHHHHHH---HHcC--ceeeeE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKL-EQAARRLA---KCVN--YVGAAT 347 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~~l~~e~~~eL-~~~A~rla---~aLG--y~Ga~t 347 (2267)
.++.|+. .+..+. +.+.+++. ...+|++.++++...++ .+.+.++. .++| |+|+++
T Consensus 198 ~~~~dg~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ 271 (423)
T TIGR00877 198 LAFVDGK-TVIPMP-----PAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLY 271 (423)
T ss_pred EEEEcCC-eEEece-----eeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEE
Confidence 9999863 343332 11222221 12356655666665553 33444444 4444 789999
Q ss_pred EEEEEEccCCcEEEeeeCccCcCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccC
Q 000092 348 VEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATP 426 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~ 426 (2267)
+||+++ ++++|++|+|||+++... .....+++|+.+++++++.|.. +.++ +.
T Consensus 272 ie~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~l-~~~~------------------------~~ 324 (423)
T TIGR00877 272 AGLMLT--KEGPKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKL-DEVE------------------------LR 324 (423)
T ss_pred EEEEEE--CCCcEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCCC-CCCC------------------------ce
Confidence 999999 445999999999987532 2333467999999999999952 2110 01
Q ss_pred CCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc-c--cCCCcEEEE-Eeeee-CCcccccCCcccEEEEEEeC
Q 000092 427 FDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS-F--KSKPNVWAY-FSVKS-GGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 427 f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~-~--~s~~~V~~~-~~v~~-G~~i~~~~Ds~~g~via~G~ 501 (2267)
| .++.++...+.+.. +....++...+. + ...+++.++ .++.. .+.+ ....+++|+|++.|+
T Consensus 325 ~---------~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~vi~~g~ 390 (423)
T TIGR00877 325 F---------DNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAGTKQDNGKL-VTSGGRVLAVTALGK 390 (423)
T ss_pred E---------CCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECceeccCCEE-EEcCCEEEEEEEecC
Confidence 1 11223333343322 111123223222 1 122344332 12211 1111 124567999999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000092 502 SRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2267)
|+++|++++.++++.+++.|
T Consensus 391 ~~~~a~~~~~~~~~~i~~~~ 410 (423)
T TIGR00877 391 SLEEARERAYEAVEYIKFEG 410 (423)
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999987
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=341.62 Aligned_cols=379 Identities=17% Similarity=0.194 Sum_probs=263.7
Q ss_pred EEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG-~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....++.++++.+ ++++ ++ + +..+.....++.+.+ ++.|.+.|+++|+
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i-----------~~--~--~~n~g~~~~~~~~~~-------~~~d~~~l~~~~~ 59 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKV-----------YV--A--PGNAGTALLAENVVI-------DVTDIEALVAFAK 59 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE-----------EE--e--CCCHHHHhhccccCC-------CCCCHHHHHHHHH
Confidence 8999999998888999998864 3332 33 1 112333333333222 4578999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|++|.+... ...+.+.|++.|++++||++++++.++||..+|++++++|||+|+|..
T Consensus 60 ~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (420)
T PRK00885 60 EEGIDLTVVGPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYET---------------- 122 (420)
T ss_pred HhCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999998843221 123456788899999999999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhie 284 (2267)
+.+.+++.++++++|||+||||..|+||+|+++|+|.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~s 194 (420)
T PRK00885 123 -------FTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEAS 194 (420)
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEE
Confidence 778999999999999999999999999999999999999999999876432 2458999999987 8999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEE------------EecCCCCCCHHHHHHHHH-HHHHHHH---HcC--ceeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLEQ-AARRLAK---CVN--YVGAA 346 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL~~-~A~rla~---aLG--y~Ga~ 346 (2267)
|.++.|+. .+..+. ..+.|++.. ...|++.++++..+++.+ .+.++.+ ++| |+|+.
T Consensus 195 v~~~~~g~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~ 268 (420)
T PRK00885 195 FFAFVDGE-NVLPLP-----TAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVL 268 (420)
T ss_pred EEEEECCC-ceEece-----eeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEE
Confidence 99999763 444332 122222221 235666677777666654 5555444 444 67999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2267)
++||+++ ++++|++|+|||+++. +......++.|+.+++++++.|.+... ++
T Consensus 269 ~ve~~~t--~~g~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~-------------------------~~ 321 (420)
T PRK00885 269 YAGLMIT--KDGPKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLDEV-------------------------EL 321 (420)
T ss_pred EEEEEEE--CCCcEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCCCC-------------------------Cc
Confidence 9999999 5679999999999864 434445567899999999999965421 11
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEE-Eeee-eCCcccccCCcccEEEEEEeCCH
Q 000092 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAY-FSVK-SGGGIHEFSDSQFGHVFAFGESR 503 (2267)
Q Consensus 426 ~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~-~~v~-~G~~i~~~~Ds~~g~via~G~~r 503 (2267)
.|. +...-+.+++.+.|+++|..+.. |..+ +...++.++ .++. .++.+. ...+++++|++.|+|+
T Consensus 322 ~~~-----~~~a~~~~~~~~gy~~~~~~~~~-----i~~~--~~~~~~~~~~~~~~~~~~~~~-~~g~R~~~vi~~g~t~ 388 (420)
T PRK00885 322 EWD-----DRAAVGVVLAAKGYPGDYRKGDV-----ITGL--EAADADKVFHAGTKLEDGKLV-TNGGRVLCVTALGDTL 388 (420)
T ss_pred eEC-----CCcEEEEEEeCCCCCCCCCCCCE-----eecc--cccCCCEEEECceeccCCeEE-EeCCEEEEEEEecCCH
Confidence 111 00001222222333333322211 1111 100111111 1222 112211 2336799999999999
Q ss_pred HHHHHHHHHhhcceEEec
Q 000092 504 ALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 504 eeA~~~l~~AL~el~I~G 521 (2267)
+||++++.++++.+++.|
T Consensus 389 ~eA~~~a~~~~~~i~~~~ 406 (420)
T PRK00885 389 EEAQKRAYAALDKIDFDG 406 (420)
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 999999999999999987
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=362.43 Aligned_cols=375 Identities=13% Similarity=0.166 Sum_probs=286.4
Q ss_pred ccEEEEECch--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh-hccEEEEccCCCCCCCccCHHHHH
Q 000092 48 IHSILIANNG--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR-IADQFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 48 ~kkVLIan~G--~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr-~ADe~v~vp~~~~~~~Y~dvd~Il 124 (2267)
.++|++++.+ ..+..++++++++||+++ .+.++. ...++.+ .+|+.+.. ++.|.+.|+
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi-----------~v~~~~-~~~~~~~~~~~~~~~~-------d~~d~~~l~ 62 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPY-----------FLTANR-GKYPFLDAIRVVTISA-------DTSDPDRIH 62 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEE-----------EEeCCc-hhhchhhhcceeEEEc-------CCCCHHHHH
Confidence 4678888864 355778999999999986 221121 1223333 46776665 457889999
Q ss_pred HHHHHc-CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 125 EMAEMT-RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 125 ~iA~~~-~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++++. .+++|+++.+...+ ..+..++..| ++|++++++..++||..++++++++|||+|+|..
T Consensus 63 ~~~~~~~~i~~V~~~se~~v~--~aa~lae~lg--lpg~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~----------- 127 (887)
T PRK02186 63 RFVSSLDGVAGIMSSSEYFIE--VASEVARRLG--LPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHA----------- 127 (887)
T ss_pred HHHHhcCCCCEEEeCchhhHH--HHHHHHHHhC--cCCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE-----------
Confidence 999997 68999988443222 2335555567 5589999999999999999999999999999876
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+++.++++.+|||+||||..|+||+||++|+|.+|+.++++.+... ...+++||+|++| .|+
T Consensus 128 ------------v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~-~~~~~lvEEfI~G-~E~ 193 (887)
T PRK02186 128 ------------LALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRA-GTRAALVQAYVEG-DEY 193 (887)
T ss_pred ------------eCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhc-CCCcEEEeecccC-CcE
Confidence 67888998888999999999999999999999999999999999887643 3568999999988 799
Q ss_pred eEEEEEcCCCCEE-EecccccccccccceEEE---ecCCCCCCHHHHHHHHHHHHHHHHHcCce-eeeEEEEEEEccCCc
Q 000092 284 EVQLLCDQYGNVA-ALHSRDCSVQRRHQKIIE---EGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGE 358 (2267)
Q Consensus 284 eVqvl~D~~G~vi-~l~~Rdcsvqrr~qKiie---eaPa~~l~~e~~~eL~~~A~rla~aLGy~-Ga~tVEfl~d~~~g~ 358 (2267)
+|+++.+..+..+ .+..+... .....++ ..|+. ++++..+++.+.+.++++++|+. |++|+||+++ +++
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~---~~~~~ve~g~~~P~~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t--~~g 267 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLG---PPPHFVEIGHDFPAP-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVR--GDT 267 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecC---CCCCeEEeccccCCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEE--CCC
Confidence 9999987644332 22221111 1122333 34665 77888999999999999999996 9999999998 578
Q ss_pred EEEeeeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCC
Q 000092 359 YYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTR 436 (2267)
Q Consensus 359 ~yfLEINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~ 436 (2267)
+||+|+|||++|.+ .+++.++|+|+++++++.++|.++... +.
T Consensus 268 ~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i~~~lG~~~~~~-----------------------------------~~ 312 (887)
T PRK02186 268 VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAAFAD-----------------------------------PT 312 (887)
T ss_pred EEEEEECCCCCCccHHHHHHHHHCcCHHHHHHHHhCCCCCCCC-----------------------------------CC
Confidence 99999999999985 468889999999999999999876420 11
Q ss_pred CceE-EEEEEEccCCCCCCCCCCCCcccccccc-----CCCcEEEEEeeeeCCcccccCC--cccEEEEEEeCCHHHHHH
Q 000092 437 PKGH-CVAVRVTSEDPDDGFKPTSGKVQELSFK-----SKPNVWAYFSVKSGGGIHEFSD--SQFGHVFAFGESRALAIA 508 (2267)
Q Consensus 437 ~~Gh-ai~aRI~aEdp~~~F~Ps~G~i~~l~~~-----s~~~V~~~~~v~~G~~i~~~~D--s~~g~via~G~~reeA~~ 508 (2267)
+.+| ++.+.+ + |..|+|..+.+. ..+.+.....+++|..++..-| +++|+|+++|+|++++.+
T Consensus 313 ~~~~~ai~~~~-~--------~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~g~vi~~g~~~~e~~~ 383 (887)
T PRK02186 313 AKRYGAIRFVL-P--------ARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAA 383 (887)
T ss_pred CCCeEEEEEEe-c--------CCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCccEEEEEEcCCHHHHHH
Confidence 1233 333333 2 235888776542 2345555566889999877644 679999999999999999
Q ss_pred HHHHhhcceEEe
Q 000092 509 NMVLGLKEIQIR 520 (2267)
Q Consensus 509 ~l~~AL~el~I~ 520 (2267)
++.++.+.++|+
T Consensus 384 ~~~~~~~~l~~~ 395 (887)
T PRK02186 384 AAERAVAGLSID 395 (887)
T ss_pred HHHHHHhcCEEE
Confidence 999999999885
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=334.63 Aligned_cols=384 Identities=14% Similarity=0.164 Sum_probs=271.3
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|++||||+|+|.-...++.++++.|++++ +++.. .|......++.++.+ +..|.+.|+++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~-----------~~~~~--~Npg~~~~a~~~~~~-------~~~d~e~l~~~ 60 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILF-----------SVIGH--ENPSIKKLSKKYLFY-------DEKDYDLIEDF 60 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEE-----------EEECC--CChhhhhcccceeec-------CCCCHHHHHHH
Confidence 57899999999999999999999997765 33222 344445667765544 34678999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|++|.+.... ..+...+++.|++.+||+.++++.++||..+|++++++|||+|+++.
T Consensus 61 ~~~~~id~Vi~~~d~~l~-~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~-------------- 125 (435)
T PRK06395 61 ALKNNVDIVFVGPDPVLA-TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFN-------------- 125 (435)
T ss_pred HHHhCCCEEEECCChHHH-HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccc--------------
Confidence 999999999999653221 13445667789999999999999999999999999999999987543
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhh-CCCCcEEEEEeccccceee
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGE-VPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e-~~~~~I~VEeyI~g~rhie 284 (2267)
.+.+.+++..++.+++|||||||+.++||+||++|.+. +++.+++..+... ..+.+++||||++| .|++
T Consensus 126 --------~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G-~E~S 196 (435)
T PRK06395 126 --------ACFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG-EEFS 196 (435)
T ss_pred --------eeCChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC-ceEE
Confidence 04466788887888899999999999999999999643 3344444444432 33568999999987 6999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEe------------c----CCCCCCHHHHHHHHHHHHHHHHHcC-----ce
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEE------------G----PITVAPLETVKKLEQAARRLAKCVN-----YV 343 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiiee------------a----Pa~~l~~e~~~eL~~~A~rla~aLG-----y~ 343 (2267)
|+++.|+. ++..+. +-+.|.+..+. + |.+.++++..+++.+.+.+++++|+ |+
T Consensus 197 vd~~~dg~-~~~~l~-----~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~ 270 (435)
T PRK06395 197 LQAFSDGK-HLSFMP-----IVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFK 270 (435)
T ss_pred EEEEEcCC-eEEEec-----ccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 99999864 333321 22233332221 1 3445889999999999999999999 78
Q ss_pred eeeEEEEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 344 GAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 344 Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
|+.++||+++ ++++|+||+|+|++.- ..+.-...+.|+..+.+.++.| +|..
T Consensus 271 G~l~~~~~lt--~~gp~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g-~l~~------------------------ 323 (435)
T PRK06395 271 GIMYGQFMDT--PNGVKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG-NLNG------------------------ 323 (435)
T ss_pred EEEEEEEEEe--CCCcEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC-CCCC------------------------
Confidence 9999999998 6779999999999943 3333234589999999999999 5531
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEE-EEeeee-CCcccccCCcccEEEEEEe
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWA-YFSVKS-GGGIHEFSDSQFGHVFAFG 500 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~-~~~v~~-G~~i~~~~Ds~~g~via~G 500 (2267)
.+.|. ....-+.++...-|+++ |..|.|........+++.+ +.++.. .+.+ ....+++++|++.|
T Consensus 324 -~~~~~-----~~~~~~~~l~~~gYp~~------~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-~s~ggRv~~vv~~g 390 (435)
T PRK06395 324 -SIKFE-----RKATVLKYIVPPGYGEN------PSPGRIKIDKTIFDSNSDVYYASVSGTLNDV-KTSGSRSLAIIAKG 390 (435)
T ss_pred -Cceec-----CCCEEEEEEecCCCCCC------CCCCceeccccccCCCCEEEEeeccccCCCe-EECCCcEEEEEEEc
Confidence 11221 00112333333333333 3445554221111244433 333321 1122 22456799999999
Q ss_pred CCHHHHHHHHHHhhcceEEec
Q 000092 501 ESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 501 ~~reeA~~~l~~AL~el~I~G 521 (2267)
+|+++|++++.++++.++ .|
T Consensus 391 ~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 391 DSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred CCHHHHHHHHHHHHhccC-CC
Confidence 999999999999999998 55
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=333.81 Aligned_cols=383 Identities=19% Similarity=0.186 Sum_probs=273.0
Q ss_pred EEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 52 LIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 52 LIan~G~~Av~iIrsaR~lG--~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||+|+|.-.-.+..++++-. .+++ +.| ..+....+++.+.+|. -++.|.+.|+++|++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~-----------~~p-----gn~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~ 60 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVF-----------CAP-----GNAGIATSGDATCVPD----LDISDSAAVISFCRK 60 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEE-----------ECC-----CCHHHhhhccceeecC----CCCCCHHHHHHHHHH
Confidence 68898877666777776654 2222 332 2356666677666653 256778999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
+++|.|++|+..... +.+.+.|++.|++++||+.++++.++||..+|++++++|||||+|..
T Consensus 61 ~~id~vvvg~E~~lv-~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~----------------- 122 (434)
T PLN02257 61 WGVGLVVVGPEAPLV-AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYET----------------- 122 (434)
T ss_pred cCCCEEEECCchHHH-HHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEE-----------------
Confidence 999999999543222 25667888899999999999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccceeeE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhieV 285 (2267)
+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+... ..+.+++||+|++| +|++|
T Consensus 123 ------~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv 195 (434)
T PLN02257 123 ------FTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASF 195 (434)
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEE
Confidence 67889999999999999999999999999999999999999999887432 12468999999988 59999
Q ss_pred EEEEcCCCCEEEecccccccccccceEE------------EecCCCCCCHHHHHHH-HHHHHHH---HHH--cCceeeeE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKL-EQAARRL---AKC--VNYVGAAT 347 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL-~~~A~rl---a~a--LGy~Ga~t 347 (2267)
+++.|+. +++.+. ..| .|+++. ..+|++.+++++.+++ ++.+.++ .++ +.|+|+.+
T Consensus 196 ~~~~dG~-~~~pl~----~~~-dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ 269 (434)
T PLN02257 196 FALVDGE-NAIPLE----SAQ-DHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLY 269 (434)
T ss_pred EEEECCC-cEEEEE----eee-ecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999854 555542 233 243333 2467777888888875 4444444 334 45679999
Q ss_pred EEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccC
Q 000092 348 VEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATP 426 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~ 426 (2267)
+||+++.+++++||||+|+|+|. |+.++...++.||++++++++.|.... + ++.
T Consensus 270 ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~~-~------------------------~~~ 324 (434)
T PLN02257 270 AGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELSG-V------------------------SLT 324 (434)
T ss_pred EEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCCC-C------------------------Cce
Confidence 99999843677999999999995 466676679999999999999995321 1 122
Q ss_pred CCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccC--CCcEEEEE-eee--eCCcccccCCcccEEEEEEeC
Q 000092 427 FDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKS--KPNVWAYF-SVK--SGGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 427 f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s--~~~V~~~~-~v~--~G~~i~~~~Ds~~g~via~G~ 501 (2267)
|+ ....-+.+++..-|+..+..++ .|..+.-.. .+++.++. ++. .++.+. ...+++..|+++|+
T Consensus 325 ~~-----~~~av~vv~a~~gYp~~~~~g~-----~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-t~ggRvl~v~~~g~ 393 (434)
T PLN02257 325 WS-----PDSAMVVVMASNGYPGSYKKGT-----VIKNLDEAEAVAPGVKVFHAGTALDSDGNVV-AAGGRVLGVTAKGK 393 (434)
T ss_pred EC-----CCceEEEEEcCCCCCCCCCCCC-----EeeCCccccccCCCCEEEECCceEccCCEEE-ECCCeEEEEEEecC
Confidence 22 0011223333333333332221 122121101 13433332 222 122222 23466899999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000092 502 SRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2267)
|.++|++++.++++.+++.|
T Consensus 394 ~~~~A~~~ay~~~~~i~~~~ 413 (434)
T PLN02257 394 DIAEARARAYDAVDQIDWPG 413 (434)
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999998
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=371.07 Aligned_cols=325 Identities=21% Similarity=0.319 Sum_probs=263.7
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
..+||||+|.|. .++.+++++|++||+++ .+..++...+.....||+.|..|
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI-----------~vn~npetvs~~~~~aD~~y~ep------ 616 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETI-----------MINNNPETVSTDYDTADRLYFEP------ 616 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEE-----------EEeCCccccccccccCceEEEcc------
Confidence 468999999986 36789999999999986 44334334455666799988765
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.|+++++++++|+|+|++|.... ..++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 617 --~~~e~vl~I~~~e~~dgVI~~~g~~~~-~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~--- 690 (1068)
T PRK12815 617 --LTLEDVLNVAEAENIKGVIVQFGGQTA-INLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLT--- 690 (1068)
T ss_pred --CCHHHHHHHHhhcCCCEEEEecCcHHH-HHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEE---
Confidence 347999999999999999998876532 34678888999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++||||||||+.++||+|+++|+|.+||..+++.+ .....+++||+
T Consensus 691 --------------------~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~--~s~~~~vlIee 748 (1068)
T PRK12815 691 --------------------ATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN--ASQLYPILIDQ 748 (1068)
T ss_pred --------------------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh--hcCCCCEEEEE
Confidence 78999999999999999999999999999999999999999999987 34567899999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccc--cc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
|++| .|++|++++|+.. ++.....+. +.+. |. ......|+..++++..++|++.+.++++++|++|++++||++
T Consensus 749 fI~G-~E~~Vd~i~dg~~-v~i~~i~e~-~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v 825 (1068)
T PRK12815 749 FIDG-KEYEVDAISDGED-VTIPGIIEH-IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVL 825 (1068)
T ss_pred eecC-ceEEEEEEEcCCc-eEEeeEEEE-eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEE
Confidence 9976 6999999999743 322211110 0010 10 011223555688899999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch-------------------hhhhcccccCCCc
Q 000092 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP-------------------EIRRFYGMEHGGV 413 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip-------------------dir~~yg~~~~~~ 413 (2267)
+ ++++|+||+|||+++..|+.+.++|+|++++.+++++|.++..+. ...+|.|.|+. |
T Consensus 826 ~--~~~~yviEiNpR~s~t~~~~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~f~f~~~~~~~~~-l 902 (1068)
T PRK12815 826 A--NDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMPVFSYLKYPGVDNT-L 902 (1068)
T ss_pred E--CCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEeccCChhHcccCCCc-c
Confidence 8 688999999999999999999999999999999999999876431 13344455554 4
Q ss_pred ccccccccc
Q 000092 414 YDAWRKTSV 422 (2267)
Q Consensus 414 ~~~~~~~~~ 422 (2267)
+++||++|+
T Consensus 903 g~~m~stGe 911 (1068)
T PRK12815 903 GPEMKSTGE 911 (1068)
T ss_pred CCcceEcce
Confidence 567777664
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=368.40 Aligned_cols=305 Identities=20% Similarity=0.344 Sum_probs=253.1
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
..+||||+|+|. .++++++++|++||+++ .+..++..-+....+||+.|..|
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi-----------~v~~npetvs~~~~~aD~~y~e~------ 615 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 615 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEE-----------EEeCCccccccccchhhheeecC------
Confidence 468999999987 46889999999999986 44222222334467899877654
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.++++++++++|+|++.+|..... .++..|++.|+.++|++++++..+.||..++++++++|||+|+|..
T Consensus 616 --~~~e~v~~i~~~e~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~--- 689 (1066)
T PRK05294 616 --LTLEDVLEIIEKEKPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGT--- 689 (1066)
T ss_pred --CCHHHHHHHHHHcCCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEE---
Confidence 2489999999999999999876644432 4678899999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++||||||||+.|+||+|+.+|+|.+||..+++.+.....+.+++||+
T Consensus 690 --------------------~~s~ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEe 749 (1066)
T PRK05294 690 --------------------ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDK 749 (1066)
T ss_pred --------------------ECCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 778999999999999999999999999999999999999999999887666678999999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccc--cc-eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--HQ-KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~q-KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
|++|.+|++|++++|+. +++.....+. +.+. |. ......|+..++++..++|.+.+.++++++|+.|+++|||++
T Consensus 750 fI~G~~E~sV~~v~dg~-~v~i~~i~e~-i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~ 827 (1066)
T PRK05294 750 FLEGAIEVDVDAICDGE-DVLIGGIMEH-IEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAV 827 (1066)
T ss_pred cCCCCEEEEEEEEecCC-eEEEeeeEEe-eeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEE
Confidence 99987799999999865 2332211000 0000 10 011224655688899999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
+ ++++|++|+|||+++..|+++.++|+|++++.+++++|.++..
T Consensus 828 ~--~~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~~~~lG~~l~~ 871 (1066)
T PRK05294 828 K--DDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAE 871 (1066)
T ss_pred E--CCeEEEEEEecCCCccHHHHHHHhCccHHHHHHHHHcCCChhh
Confidence 8 7899999999999999999999999999999999999998864
|
|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-30 Score=324.29 Aligned_cols=380 Identities=16% Similarity=0.154 Sum_probs=268.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
..||||+|+|.-...++.++++.++.+. +.+.|. |......+- ...++ -++.|.+.|+++|
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~---------~~~~pg----n~g~~~~~~-~~~~~-----~~~~d~~~l~~~a 64 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSE---------LKVFPG----NGGFPDDEL-LPADS-----FSILDKSSVQSFL 64 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCE---------EEEECC----chHHhcccc-ccccC-----cCcCCHHHHHHHH
Confidence 4699999999999999999999885542 123332 221111110 11111 2668999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCc---hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 128 EMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++|.|++|. |++. +++.|++.|++++||+..++++++||..+|++++++|||+|+|..
T Consensus 65 ~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~------------ 128 (426)
T PRK13789 65 KSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKT------------ 128 (426)
T ss_pred HHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEe------------
Confidence 999999999984 4433 557788899999999999999999999999999999999999865
Q ss_pred ccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~ 280 (2267)
+++.+++.+++++++||+||||..++||+||++|++.+|+.++++.+.... .+..++||+|++|
T Consensus 129 -----------~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G- 196 (426)
T PRK13789 129 -----------FTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG- 196 (426)
T ss_pred -----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-
Confidence 678999999999999999999999999999999999999999999886432 2357999999988
Q ss_pred ceeeEEEEEcCCCCEEEecccccccccccceE------------EEecCCCCCCHHHHHHHHH-HHHHHH---HHcC--c
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQ-AARRLA---KCVN--Y 342 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~~l~~e~~~eL~~-~A~rla---~aLG--y 342 (2267)
+|++|.++.|+. +++.+.. . +.|++. ...+|++.+++++.+++.+ .+.+++ ++.| |
T Consensus 197 ~E~Sv~~~~dg~-~~~~lp~----~-~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~ 270 (426)
T PRK13789 197 QEASIFAISDGD-SYFLLPA----A-QDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPY 270 (426)
T ss_pred eEEEEEEEECCC-EEEEccc----e-EecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 799999999853 4433321 1 123222 2356887778888888764 444555 4445 8
Q ss_pred eeeeEEEEEEEccCCcEEEeeeCccCcCCcceeh---hhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccc
Q 000092 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTE---WIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419 (2267)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE---~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~ 419 (2267)
+|+.++||++++ +|++||||+|||++. |.++ ...+.||.+++++.+.|.... +
T Consensus 271 ~Gvl~~e~~it~-~g~~~vlE~n~R~Gd--pe~~~ll~~l~~dl~~~~~~~~~g~l~~-~-------------------- 326 (426)
T PRK13789 271 RGLLYAGLMISP-EGEPKVVEFNCRFGD--PETQCVLAMLDGDLLELLYAASTGKIKV-V-------------------- 326 (426)
T ss_pred eEEEEEEEEEcC-CCCEEEEEEecCCCC--cHhhhhhccCCCCHHHHHHHHHcCCCCC-C--------------------
Confidence 999999999983 567999999999963 2222 123579999999999995221 0
Q ss_pred ccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEE-eee-eCCcccccCCcccEEE
Q 000092 420 TSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHV 496 (2267)
Q Consensus 420 ~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~-i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~v 496 (2267)
.+.|. .+.++...+.++..- ..+..|. |. +.-...+++.++. ++. .++.+. .+..+...|
T Consensus 327 ----~~~~~---------~~~s~~vv~a~~gyp--~~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~~~-t~ggRvl~v 389 (426)
T PRK13789 327 ----NLKLK---------QGAAAVVVLAAQGYP--DSYEKNIPLN-LPETSGQNVVLFHAGTKKKDGKVF-SSGGRILGI 389 (426)
T ss_pred ----Cceec---------CCceEEEEECcCCcC--CCcCCCCEEe-ccCcCCCCcEEEEeeeeeeCCEEE-eCCCeEEEE
Confidence 11221 123333333332210 1122343 22 2211113544442 332 223222 345668889
Q ss_pred EEEeCCHHHHHHHHHHhhcceEEec
Q 000092 497 FAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 497 ia~G~~reeA~~~l~~AL~el~I~G 521 (2267)
++.|+|.+||++++.++++.+++.|
T Consensus 390 ~~~g~~~~~A~~~ay~~~~~i~~~~ 414 (426)
T PRK13789 390 VAQGKDLKDSVDQAYSFLEKIQAPK 414 (426)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999988
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=321.04 Aligned_cols=293 Identities=20% Similarity=0.300 Sum_probs=239.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcC--CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWA--YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG--~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|.||||+|.|... .+++++++.| |+++ ++ |.++.+++.++||+++.+|... ...| ++.+++
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi-----------~~--d~~~~~~~~~~~d~~~~~p~~~-~~~~--~~~l~~ 63 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVI-----------GA--DISELAPALYFADKFYVVPKVT-DPNY--IDRLLD 63 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEE-----------EE--CCCCcchhhHhccCcEecCCCC-ChhH--HHHHHH
Confidence 5799999988666 8899999995 7775 55 5567888899999999987542 2344 789999
Q ss_pred HHHHcCCCEEEeCCCcCCC-CCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 126 MAEMTRVDAVWPGWGHASE-IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sE-n~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++++|+|+|+++.... -....+.+++.|+.++||+++++..+.||..++++++++|+|+|+|..
T Consensus 64 ~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------ 131 (326)
T PRK12767 64 ICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYL------------ 131 (326)
T ss_pred HHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEc------------
Confidence 9999999999998653321 112345677789999999999999999999999999999999999765
Q ss_pred ccCcccccccccCCHHHHHH--HHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccce
Q 000092 205 TIPDDVYRQACVYTTEEAIA--SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~--~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rh 282 (2267)
+++.+++.+ ..++++||+|+||..|+||+|+++|+|.+|+.++++.. .+++||+|++| ++
T Consensus 132 -----------~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~------~~~lvqeyi~G-~e 193 (326)
T PRK12767 132 -----------PESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV------PNLIIQEFIEG-QE 193 (326)
T ss_pred -----------ccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC------CCeEEEeccCC-ce
Confidence 677888877 55789999999999999999999999999999988764 38999999976 89
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+++.++.+.+|+++.++.+.....+... .. +.... ..+++.+.+.++++++||.|.+++||+++ +|++|||
T Consensus 194 ~~v~~~~~~~G~~~~~~~~~~~~~~~g~-~~---~~~~~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~vi 264 (326)
T PRK12767 194 YTVDVLCDLNGEVISIVPRKRIEVRAGE-TS---KGVTV---KDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLF 264 (326)
T ss_pred EEEEEEEcCCCCEEEEEEeeeeeecCCc-ee---EEEEc---CCHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEE
Confidence 9999999877998877655432111110 00 00001 12678899999999999999999999999 5889999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|+|||+++.++++ ..+|+|++++.++.++|.+++
T Consensus 265 EiNpR~~g~~~~~-~~~G~n~~~~~~~~~~g~~~~ 298 (326)
T PRK12767 265 EINPRFGGGYPLS-YMAGANEPDWIIRNLLGGENE 298 (326)
T ss_pred EEeCCCCCcchhh-HhhCCCHHHHHHHHHcCCCCC
Confidence 9999999988765 469999999999999999875
|
|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=325.11 Aligned_cols=334 Identities=17% Similarity=0.198 Sum_probs=244.1
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
++.|.+.|+++|+++++|+|++|.+.... ..+.+.|++.|+.++||++++++.++||..+|++++++|||+|+|..
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l~-~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~--- 87 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPLI-DGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKE--- 87 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHHH-HHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEE---
Confidence 56789999999999999999998654222 23557888899999999999999999999999999999999999865
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++|||+||||..|+||+||++|+|.+|+.++++.+.......+++||+
T Consensus 88 --------------------~~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe 147 (379)
T PRK13790 88 --------------------VERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFET 147 (379)
T ss_pred --------------------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 678889999999999999999999999999999999999999999876433345899999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccccc------e-----EEEecCCCCCCHHHHHHH-HHHHHHHHHHc---
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ------K-----IIEEGPITVAPLETVKKL-EQAARRLAKCV--- 340 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q------K-----iieeaPa~~l~~e~~~eL-~~~A~rla~aL--- 340 (2267)
|++| +|++|.++.|+.. .+.+ +|..|.+.. + .....|++.++++..+++ ++.+.+++++|
T Consensus 148 ~i~G-~E~sv~~~~~g~~-~~~~---~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~ 222 (379)
T PRK13790 148 FLEG-EEFSLMTFVNGDL-AVPF---DCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNE 222 (379)
T ss_pred cccC-ceEEEEEEeeCCE-EEec---ccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988 7999999998542 2221 233332111 0 112346666777776655 66667776666
Q ss_pred C--ceeeeEEEEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccc
Q 000092 341 N--YVGAATVEYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAW 417 (2267)
Q Consensus 341 G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~ 417 (2267)
| |.|+.++||+++ ++++|++|+|+|+++- ..++...+|+|+.+.+++++.|.++..
T Consensus 223 g~~~~Gvl~~e~~lt--~~g~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~------------------- 281 (379)
T PRK13790 223 GYQFFGVLYIGAILT--KDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEF------------------- 281 (379)
T ss_pred CCCceeEEEEEEEEe--CCCeEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCce-------------------
Confidence 4 479999999998 4569999999999762 334444579999999999999976531
Q ss_pred ccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCcccEEE
Q 000092 418 RKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHV 496 (2267)
Q Consensus 418 ~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~v 496 (2267)
.| .+....|-+++.+.|+++|..+ +.|..+.. .+...+.++. .++.+. ...++++.|
T Consensus 282 --------~~-----~~~~~~~v~~~s~gyp~~~~~~-----~~i~~~~~---~~~~~~~~~~~~~~~~~-~~ggRv~~v 339 (379)
T PRK13790 282 --------KW-----KNESIVGVMLASKGYPDAYEKG-----HKVSGFDL---NENYFVSGLKKQGDTFV-TSGGRVILA 339 (379)
T ss_pred --------eE-----cCCCEEEEEEccCCCCCCCCCC-----CeeeecCC---CCeEEECCccccCCeEE-ECCCeEEEE
Confidence 11 1112235555555565544332 22222211 1111122222 111111 123568899
Q ss_pred EEEeCCHHHHHHHHHHhhcceEEec
Q 000092 497 FAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 497 ia~G~~reeA~~~l~~AL~el~I~G 521 (2267)
++.|+|.+||++++.++++.+++.|
T Consensus 340 ~~~g~~~~~a~~~~~~~~~~i~~~~ 364 (379)
T PRK13790 340 IGKGDNVQDAQRDAYEKVSQIQSDH 364 (379)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999988
|
|
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=298.56 Aligned_cols=301 Identities=18% Similarity=0.259 Sum_probs=254.0
Q ss_pred chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEE
Q 000092 56 NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAV 135 (2267)
Q Consensus 56 ~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV 135 (2267)
..-.+...++++|+.||+|+ .+.+.+..-..-..+||++|..|. ..+.+..+++++++|++
T Consensus 14 fdysG~qac~aLkeeg~~vv-----------lvnsnpAti~td~e~AD~~y~eP~--------~~E~v~~Ii~~E~~Dai 74 (400)
T COG0458 14 FDYSGTQACKALKEEGYGVV-----------LVNSNPATIMTDPELADKVYIEPI--------TKEPVEKIIEKERPDAI 74 (400)
T ss_pred echhHHHHHHHHHhcCCeEE-----------EEcCCCccccCCchhcceeeeecC--------cHHHHHHHHHhcCccee
Confidence 34566777899999999987 342333333333479999999984 37889999999999999
Q ss_pred EeCCCcCCC-CCchH----HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 136 WPGWGHASE-IPELP----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 136 ~pG~G~~sE-n~~la----~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
+|+.|.... |..+. -.|++.|+.++|.+++++..+.||..++.++.+.|+|+| +.
T Consensus 75 lp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P--~~------------------ 134 (400)
T COG0458 75 LPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP--SR------------------ 134 (400)
T ss_pred ecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC--cc------------------
Confidence 999886553 32111 123445999999999999999999999999999999999 22
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEc
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD 290 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D 290 (2267)
..++.+++.+..+.+||||||||+.+.||.|..+++|.+||.+........++..++++|+++.|..|++..++.|
T Consensus 135 ----~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd 210 (400)
T COG0458 135 ----IAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRD 210 (400)
T ss_pred ----ccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEe
Confidence 1678999999999999999999999999999999999999999999988888888999999999999999999999
Q ss_pred CCCCEEEecccccc--cccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccC
Q 000092 291 QYGNVAALHSRDCS--VQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2267)
Q Consensus 291 ~~G~vi~l~~Rdcs--vqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2267)
.+++++.+...... .-.+.-..+..+|+..+++...+.++.++.++++.+|..|.++++|.+++.++++||+|+|||+
T Consensus 211 ~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRv 290 (400)
T COG0458 211 GKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRV 290 (400)
T ss_pred CCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCc
Confidence 99999877333211 1222345667899999999888889999999999999999999999999877899999999999
Q ss_pred cCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 369 qgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
+++..+.+++||..+......+|.|..++.+
T Consensus 291 SrssaLaskAtgypia~vaakla~g~~l~Ei 321 (400)
T COG0458 291 SRSSALASKATGYPIAKVAAKLAVGYTLDEI 321 (400)
T ss_pred CcchhhhhhccCChHHHHHHHhhcccCchhh
Confidence 9999999999999999999999999888764
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=308.02 Aligned_cols=380 Identities=15% Similarity=0.176 Sum_probs=256.5
Q ss_pred EEEEECchHHHHHHHHHHHHc--CCcccccccceeEEEEEeccCCCCCChhhhh----ccEEEEccCCCCCCCccCHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTW--AYETFGTEKAILLVAMATPEDMRINAEHIRI----ADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~l--G~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~----ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
||||+|+|.-...++.++++. |++++ +++.. .|....+. +|+++.+ +..|.+.|
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~-----------~~~g~--~Npg~~~~~~~~~~~~~~~-------~~~d~~~l 61 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVY-----------ALSSY--LNPGINSVVKATGGEYFIG-------NINSPEEV 61 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEE-----------EEECC--CChhheeecccccCceEec-------CCCCHHHH
Confidence 899999999999999999998 77775 44332 23333332 3455555 44678999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCC---chHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC-CCCCCccCCC
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIP---ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP-WSGSHVKIPP 199 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~---~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp-~~~~~~~~~~ 199 (2267)
+++|+++++|+|++|. |.+ .+++.|++.|++++||+++++++++||..+|++++++|||+|+ |..
T Consensus 62 ~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~------- 130 (486)
T PRK05784 62 KKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKV------- 130 (486)
T ss_pred HHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceE-------
Confidence 9999999999999983 444 3457888999999999999999999999999999999999985 443
Q ss_pred CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHH-----HHHHH----HHHHhh-----
Q 000092 200 ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE-----VRALF----KQVQGE----- 265 (2267)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eE-----L~~a~----~~~~~e----- 265 (2267)
+++.+++.++++.. +||||||+.++||+||++|++.++ +.+++ +.+...
T Consensus 131 ----------------~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g 193 (486)
T PRK05784 131 ----------------FYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYK 193 (486)
T ss_pred ----------------eCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhcc
Confidence 67889998888665 699999999999999999999873 43444 333211
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE------------ecC----CCCCCHHHHHHH
Q 000092 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGP----ITVAPLETVKKL 329 (2267)
Q Consensus 266 ~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaP----a~~l~~e~~~eL 329 (2267)
..+.+++||||++| .|++|+++.|+. +++.+. .. +.|..+.+ .+| .+.++++..+++
T Consensus 194 ~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~----~~-qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~ 266 (486)
T PRK05784 194 DVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLP----LA-QDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEA 266 (486)
T ss_pred CCCCeEEEEEccCC-eEEEEEEEECCC-eEEEee----ee-EeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHH
Confidence 12568999999987 699999999863 333221 11 12333332 135 455666766666
Q ss_pred HHHHHHHHHHc----C--ceeeeEEEEEEEccCCcEEEeeeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchh
Q 000092 330 EQAARRLAKCV----N--YVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPE 401 (2267)
Q Consensus 330 ~~~A~rla~aL----G--y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipd 401 (2267)
.+.+...++++ | |+|+.|+|++++. ++++++||+|+|++.-. .+... ++.||.++.+.++.|.. ..
T Consensus 267 ~~~v~~~l~al~~~~g~~~~G~l~~elmlt~-~~GP~vIE~n~R~Gdpe~~~llp~-l~~dl~~~~~~~~~g~l-~~--- 340 (486)
T PRK05784 267 VEIVKRTIDAIYKETGERYVGVISGQMMLTE-LWGPTVIEYYSRFGDPEASNIIPR-IESDFGELFELAATGKL-SK--- 340 (486)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEEEEec-CCCcEEEEEecccCCchHHHHHHh-ccCCHHHHHHHHHcCCC-CC---
Confidence 66666555444 3 4699999999972 45699999999999632 33333 56699999999999952 21
Q ss_pred hhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc--cCCCcEEEEE-e
Q 000092 402 IRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF--KSKPNVWAYF-S 478 (2267)
Q Consensus 402 ir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~--~s~~~V~~~~-~ 478 (2267)
..+.|. +...-+-++++.-|++. ..|..|....+.- ...+++.++. +
T Consensus 341 ---------------------~~~~~~-----~~~~~~vv~as~gYp~~----~~~~~g~~i~~~~~~~~~~~~~v~~ag 390 (486)
T PRK05784 341 ---------------------AKIKFN-----EEPSVVKAIAPLGYPLS----RDLASGRRIVVDLDKIKEEGCLVFFGS 390 (486)
T ss_pred ---------------------CCeeec-----CCceEEEEECCCCCCCc----ccCCCCCEEECCccccccCCCEEEECC
Confidence 112222 00111223333233322 1233343221110 0112222221 2
Q ss_pred ee-eCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce-EEec
Q 000092 479 VK-SGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI-QIRG 521 (2267)
Q Consensus 479 v~-~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el-~I~G 521 (2267)
++ .++.+. ....++..|++.|+|.++|++++.++++.+ .+.|
T Consensus 391 ~~~~~~~~~-t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~ 434 (486)
T PRK05784 391 VELEGGQLI-TKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTK 434 (486)
T ss_pred ceeeCCEEE-EcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCC
Confidence 22 122221 234558889999999999999999999999 8888
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=277.67 Aligned_cols=375 Identities=18% Similarity=0.225 Sum_probs=295.6
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
+|||.+|+|+.+..+.-.+.++|.+|+ ++ |...+||..+.|++.+.+ +-+|.+.|..+.+
T Consensus 13 ~kvmLLGSGELGKEvaIe~QRLG~eVi-----------AV--DrY~~APAmqVAhrs~Vi-------~MlD~~al~avv~ 72 (394)
T COG0027 13 TKVMLLGSGELGKEVAIEAQRLGVEVI-----------AV--DRYANAPAMQVAHRSYVI-------DMLDGDALRAVVE 72 (394)
T ss_pred eEEEEecCCccchHHHHHHHhcCCEEE-----------Ee--cCcCCChhhhhhhheeee-------eccCHHHHHHHHH
Confidence 689999999999999999999999986 66 889999999999999998 5689999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+.+.|.|+|-..- -+.+-...+++.|+.++ |...+.+.+.|....|+++ +++|+||.+|..
T Consensus 73 rekPd~IVpEiEA--I~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~f--------------- 134 (394)
T COG0027 73 REKPDYIVPEIEA--IATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRF--------------- 134 (394)
T ss_pred hhCCCeeeehhhh--hhHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccc---------------
Confidence 9999999987432 23334566788999876 9999999999999999876 679999999877
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC--CcEEEEEeccccceeeE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG--SPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~--~~I~VEeyI~g~rhieV 285 (2267)
+.|.+|..+++++|||||++||..++.|||-.+|.++++++.+|+.++....+ +.++||+|++..-|+++
T Consensus 135 --------a~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTl 206 (394)
T COG0027 135 --------ADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITL 206 (394)
T ss_pred --------cccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEE
Confidence 78999999999999999999999999999999999999999999999876653 58999999987444444
Q ss_pred EEEEcCCCCEEEecccccccccccc----eEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQ----KIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~q----KiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
-.++..+|+-. -|...-+.| ..-.+-|.. +++...++.+..|.++.++||-.|.+.||+++. .++.||
T Consensus 207 Ltvr~~~~~~~-----Fc~PIGHrq~dgdY~ESWQP~~-mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~F 278 (394)
T COG0027 207 LTVRAVDGTGS-----FCAPIGHRQEDGDYRESWQPQE-MSEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIF 278 (394)
T ss_pred EEEEEecCCCC-----cCCCcccccCCCChhcccCccc-cCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEE
Confidence 44444334322 143322222 223356776 888999999999999999999999999999999 789999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
-|+.||+....-+|-..-+++-.+++++..+|.|++.|+ . || +...|+
T Consensus 279 sEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~i~---~-~~----------------------------P~AS~v 326 (394)
T COG0027 279 SEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPEIR---Q-IS----------------------------PAASAV 326 (394)
T ss_pred eecCCCCCCCceEEEEeccchHHHHHHHHHhCCCcccee---e-ec----------------------------ccccce
Confidence 999999998877775556899999999999999987532 1 11 113566
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
|-+-.++.+|. -.|.-..+..|. ..|+.. |+...+-.-++|-.++++++-++|++++.++.+.+.|.+
T Consensus 327 I~~~~~~~~~~-----f~~l~~AL~~p~-t~vRlF------GKP~~~~~RRmGVALA~a~~Ve~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 327 ILAQETSQAPT-----FDGLAEALGVPD-TQVRLF------GKPEADGGRRLGVALATAESVEEARERARKAASAIEVKG 394 (394)
T ss_pred eeccccccCCc-----hhhHHHHhcCCC-ceEEEe------cCCcccCCceeeEEEecCccHHHHHHHHHHHHhheecCC
Confidence 66666554431 134444454443 244443 111112223599999999999999999999999988753
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=281.60 Aligned_cols=295 Identities=20% Similarity=0.297 Sum_probs=254.3
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+++|.|+|+|..+.++..+++++||+++ +. |.+++++..+.||..+.. .|.|.+.+.+++
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~-----------vL--dp~~~~PA~~va~~~i~~-------~~dD~~al~ela 60 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVI-----------VL--DPDADAPAAQVADRVIVA-------AYDDPEALRELA 60 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEE-----------Ee--cCCCCCchhhcccceeec-------CCCCHHHHHHHH
Confidence 4689999999999999999999999986 44 778999999999999876 678999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.+. |+|. |.|..-+.+..+.|++.. .+-|++++++...||+..|.+++++|+|||||..
T Consensus 61 ~~~--DViT--~EfE~V~~~aL~~l~~~~--~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~--------------- 119 (375)
T COG0026 61 AKC--DVIT--YEFENVPAEALEKLAASV--KVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQV--------------- 119 (375)
T ss_pred hhC--CEEE--EeeccCCHHHHHHHHhhc--CcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEE---------------
Confidence 875 8888 555555555566676663 3349999999999999999999999999999987
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+.+.+|+..+++++|||.|+|.+.|| .|||.+++.+.+++.......... +.+ ++|+|++..+|+||-
T Consensus 120 --------v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~~--~~~-vlE~fV~F~~EiSvi 188 (375)
T COG0026 120 --------VDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAEG--GVP-VLEEFVPFEREISVI 188 (375)
T ss_pred --------eCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhcc--Cce-eEEeecccceEEEEE
Confidence 88999999999999999999999988 999999999999988755543311 223 999999999999999
Q ss_pred EEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+.++.+|++.++..- ..+++..-.....+|+. +++++.++.+++|.++++.|+|+|+..|||++++ +|++++.|+.|
T Consensus 189 ~aR~~~G~~~~yP~~-eN~h~~gIl~~siaPa~-i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg~llvNEiAP 265 (375)
T COG0026 189 VARSNDGEVAFYPVA-ENVHRNGILRTSIAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DGELLVNEIAP 265 (375)
T ss_pred EEEcCCCCEEEeccc-ceeeecCEEEEEEecCc-CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CCcEEEeeccC
Confidence 999988998875432 45566655555678985 7888999999999999999999999999999984 67999999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|+..+...|...+.++..+.+|+..+|.||+
T Consensus 266 RvHNSGH~T~~gc~~SQFEqHlRAv~glPLg 296 (375)
T COG0026 266 RVHNSGHWTIDGCETSQFEQHLRAVLGLPLG 296 (375)
T ss_pred CCCCccccchhhccccHHHHHHHHHhCCCCC
Confidence 9999988888899999999999999999997
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=294.63 Aligned_cols=288 Identities=26% Similarity=0.383 Sum_probs=235.4
Q ss_pred EECch-HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcC
Q 000092 53 IANNG-MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTR 131 (2267)
Q Consensus 53 Ian~G-~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~ 131 (2267)
..|+| ..+..+|+++|+.+ .+ ..+++ +.+++++....||+++..|. +.+.| ++.++++|++++
T Consensus 3 wfn~~~s~~~~~i~~lr~~~--------~~--~i~~s--h~~~~~~~~~~aD~~~~eP~--~~~~y--v~~~l~~C~~~~ 66 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRANR--------DF--TIIAS--HRDPRAPILYAADEAYLEPA--DGEEY--VDWCLDFCKEHG 66 (329)
T ss_pred EecCCCccHHHHHHHHHcCC--------Ce--EEEEE--eCCCCchHHhcCceeeecCC--CHHHH--HHHHHHHHHHhC
Confidence 34554 56678899999751 12 23366 77789999999999999997 66788 899999999999
Q ss_pred CCEEEeCCCcCCCCCchHHHHHHcCCeEeC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 132 VDAVWPGWGHASEIPELPDTLSTKGIIFLG-PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 132 vDaV~pG~G~~sEn~~la~~l~~~GI~fiG-Ps~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
+|.++||+.... -..-.+.+++.|+.+.- ++.+++..+.||..+.+.+++.|||+|+|..
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~------------------ 127 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWR------------------ 127 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEE------------------
Confidence 999999965322 12234667778999987 8899999999999999999999999999987
Q ss_pred ccccccCCHHHHHHHHhhhCCc---EEEeecCCCCCcCeEEEC-CHHHHHHHHH------------HHHhh-CCCCcEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYP---AMIKASWGGGGKGIRKVH-NDDEVRALFK------------QVQGE-VPGSPIFI 273 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyP---VVIKPs~GgGGkGIr~V~-s~eEL~~a~~------------~~~~e-~~~~~I~V 273 (2267)
+++.+++..+++++++| ++|||..|.||.|.|+++ +.+++...++ .+.+. ..-.+++|
T Consensus 128 -----v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llv 202 (329)
T PF15632_consen 128 -----VRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLV 202 (329)
T ss_pred -----eCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEE
Confidence 89999999999998888 999999999999999998 5555554443 11111 12358999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEE
Q 000092 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYS 353 (2267)
Q Consensus 274 EeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d 353 (2267)
|+|++| .|+||+++++. |++++..+|... .+.|.+ +..+++.+.|.++++.+|+.|..+|+|++|
T Consensus 203 MeyL~G-~EySVD~l~~~-G~viaaV~R~K~--G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d 267 (329)
T PF15632_consen 203 MEYLPG-PEYSVDCLADE-GRVIAAVPRRKL--GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYD 267 (329)
T ss_pred ecCCCC-CeEEEEEEecC-CEEEEEEEEEec--CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEc
Confidence 999988 69999999997 999977666433 122222 234688999999999999999999999997
Q ss_pred ccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 354 METGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
.+|.+++||||||++|+.+.+- .+|+||+.+.+..++|.+.+
T Consensus 268 -~~g~p~LLEINpR~sGGi~~s~-~aGvNlp~la~~~~lG~~~~ 309 (329)
T PF15632_consen 268 -EDGNPKLLEINPRPSGGIGYSC-AAGVNLPYLAVKLALGEPIP 309 (329)
T ss_pred -CCCCEEEEEeCCCCccchhhHh-hcCCChHHHHHHHHcCCCCC
Confidence 4899999999999999998886 69999999999999999875
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=292.74 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=175.0
Q ss_pred CCCCCChHHHhcccccCCCCcccccccCCCceecccc--cc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCC
Q 000092 1856 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--WA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1931 (2267)
Q Consensus 1856 P~~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~--~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~ 1931 (2267)
|.+||| +++|+. ||| +|+|+..+ |+ +++|||+|||+|+||+|||++++..
T Consensus 67 ~~Rp~~-~d~I~~-----------l~d--~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~------------ 120 (319)
T PRK05724 67 PQRPYT-LDYIEL-----------LFT--DFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRD------------ 120 (319)
T ss_pred CCCCCH-HHHHHH-----------Hhh--HHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCcc------------
Confidence 347999 488887 787 69999988 77 9999999999999999999976421
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1932 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1932 s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+ .+.+.+|+++|++++|++|++++|++|++|||+|+||+||.+|..+|..|+.+++++++.++++.+||+|++|+
T Consensus 121 ~~e-~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIi-- 197 (319)
T PRK05724 121 TKE-KIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVI-- 197 (319)
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEe--
Confidence 122 23456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHH
Q 000092 2012 AELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES 2091 (2267)
Q Consensus 2012 g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~ 2091 (2267)
|+++||+..+++. +|+ ++|||+|.++||+|||++.|.||+.... ++.+
T Consensus 198 Geg~sGGAla~~~---aD~--v~m~~~A~~svisPEg~a~Il~~~~~~a--------------------------~~aa- 245 (319)
T PRK05724 198 GEGGSGGALAIGV---GDR--VLMLEYSTYSVISPEGCASILWKDASKA--------------------------PEAA- 245 (319)
T ss_pred CCccHHHHHHHhc---cCe--eeeecCceEeecCHHHHHHHHhcCchhH--------------------------HHHH-
Confidence 7766665555553 587 9999999999999999999999975210 0000
Q ss_pred HHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2092 LQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2092 ~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
+ .+.-||..+++.|+||+||+.. .....++.+|+..|.
T Consensus 246 ---------------------e--~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~ 288 (319)
T PRK05724 246 ---------------------E--AMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALL 288 (319)
T ss_pred ---------------------H--HcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHH
Confidence 0 1223789999999999999864 445667777777764
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=286.55 Aligned_cols=189 Identities=20% Similarity=0.295 Sum_probs=168.7
Q ss_pred CCCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEE
Q 000092 1568 SGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLA 1647 (2267)
Q Consensus 1568 ~g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~ 1647 (2267)
+++|.++|...+..+|.+++ ||++.+++ +|.++++.+.||.|+|||+|.+.++||.|+.|+|.+.++|+|.|+
T Consensus 92 ~k~Y~~rL~~a~~~tg~~da-vvtg~g~i------~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~ 164 (294)
T COG0777 92 SKKYKDRLEAARKKTGLDDA-VVTGEGTI------NGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFS 164 (294)
T ss_pred chhhHHHHHHHHhhcCCCcc-eEEEeeEE------CCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 46688899999999999888 99999887 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc
Q 000092 1648 ANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT 1727 (2267)
Q Consensus 1648 ~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~ 1727 (2267)
+||||||| |++++||||+ .|++...++ +
T Consensus 165 aSGGARMQ--Eg~lSLMQMa---------------ktsaAl~~l-----------------------------------~ 192 (294)
T COG0777 165 ASGGARMQ--EGILSLMQMA---------------KTSAALKRL-----------------------------------S 192 (294)
T ss_pred cCcchhHh--HHHHHHHHHH---------------HHHHHHHHH-----------------------------------H
Confidence 99999999 9999999998 233333333 2
Q ss_pred ccccccccccccccCceEEEEEcCcccch-hhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccc
Q 000092 1728 GSGAIAGAYSRAYKETFTLTYVTGRTVGI-GAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1728 ~sG~iag~~s~a~~~iptis~vtg~~~G~-gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~ 1806 (2267)
..| .|+|+|+|+||+|| .|+++.|||++|.++++.|+|+||++|++++|++. +++++++++..+
T Consensus 193 ea~------------lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~L---PegfQ~aEfLle 257 (294)
T COG0777 193 EAG------------LPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKL---PEGFQTAEFLLE 257 (294)
T ss_pred hcC------------CceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcccC---CcchhhHHHHHH
Confidence 223 49999999999999 89999999999999999999999999999999999 899999999999
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
+|++|.+|+ +.|--..+..+|+.+
T Consensus 258 hG~iD~iv~-R~elr~tla~ll~~~ 281 (294)
T COG0777 258 HGMIDMIVH-RDELRTTLASLLAKL 281 (294)
T ss_pred cCCceeeec-HHHHHHHHHHHHHHh
Confidence 999999996 466666666666654
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=289.29 Aligned_cols=212 Identities=20% Similarity=0.255 Sum_probs=173.0
Q ss_pred CCCCCChHHHhcccccCCCCcccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCC
Q 000092 1856 PENSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLD 1931 (2267)
Q Consensus 1856 P~~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~ 1931 (2267)
|.+|||+ ++|.. ||| +|+|+..+|+ +++|||+|||+|+||+|||++.+ .+
T Consensus 67 ~~Rp~~~-d~i~~-----------l~d--~f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g------------~~ 120 (316)
T TIGR00513 67 PDRPYTL-DYIEL-----------IFD--DFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKG------------RD 120 (316)
T ss_pred CCCCchH-HHHHH-----------Hhh--hheeeccccCCCCCCceEEEEEEECCEEEEEEEecCC------------cc
Confidence 4489999 88886 788 4999999888 99999999999999999999753 12
Q ss_pred ccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1932 SHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1932 s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..++ +++.+|+++|.+++|++|++++|+++++|||+|+||+||.+|...|..|+.+++++++.++++.+||+|++|+
T Consensus 121 ~~e~-~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVVi-- 197 (316)
T TIGR00513 121 TKEK-LRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVI-- 197 (316)
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe--
Confidence 2333 3445799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCc-hhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHH
Q 000092 2012 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVE 2090 (2267)
Q Consensus 2012 g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~ 2090 (2267)
|+++| ||| +++ .+|+ ++|||+|.++||+|||++.|.||+... + ++
T Consensus 198 GeggsGGAl-a~~---~aD~--v~m~~~a~~sVisPEg~a~Il~kd~~~---------------a-----------~~-- 243 (316)
T TIGR00513 198 GEGGSGGAL-AIG---VGDK--VNMLEYSTYSVISPEGCAAILWKDASK---------------A-----------PK-- 243 (316)
T ss_pred cccccHHHh-hhc---cCCE--EEEecCceEEecCHHHHHHHhccchhh---------------H-----------HH--
Confidence 66644 555 443 2588 999999999999999999999997521 0 00
Q ss_pred HHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2091 SLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2091 ~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
|.++ +.-||..+++.|+||+|||.. .-...++..|+..|.
T Consensus 244 --------------------aae~--~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~ 288 (316)
T TIGR00513 244 --------------------AAEA--MKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLL 288 (316)
T ss_pred --------------------HHHH--ccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHH
Confidence 1111 122689999999999999855 344556777776654
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=293.31 Aligned_cols=250 Identities=19% Similarity=0.212 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCC
Q 000092 119 NVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIP 198 (2267)
Q Consensus 119 dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~ 198 (2267)
....+++..++.+..... -|++|+..++.+|+..||+++||+++++..|.||..+|++++++|||||||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~----- 163 (493)
T PRK06524 92 RHPETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLG----- 163 (493)
T ss_pred cCHHHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccc-----
Confidence 445666777776542211 278999999999999999999999999999999999999999999999998750
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhh--hCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQV--VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~--IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEey 276 (2267)
.+.+.+++...++. +||||||||+.|++|+|+++|++.+|+..+++.+.. ...++||+|
T Consensus 164 ----------------~~~~~eel~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe~ 224 (493)
T PRK06524 164 ----------------RVDSYDELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMKR 224 (493)
T ss_pred ----------------cCCCHHHHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEec
Confidence 13466677666665 999999999999999999999999999998877653 256999999
Q ss_pred ccccceeeEEEEEcCCCCEEEeccc------ccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHc---CceeeeE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAALHSR------DCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVGAAT 347 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l~~R------dcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aL---Gy~Ga~t 347 (2267)
+.+ +|++|+++.+.+|+++....+ ++..++.+.......|+. +++++.+++.+.|.+++++| ||.|.++
T Consensus 225 I~G-rEitVev~vd~dG~Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~r 302 (493)
T PRK06524 225 IRN-VEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYFE 302 (493)
T ss_pred cCc-EEEEEEEEEeCCCCEEeccccccccceEEEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 975 899999999988887653211 121122222223456875 88999999999999999998 8999999
Q ss_pred EEEEEEccCCcEEEeeeCccCcCCcceehhhh--cCCHH--HHHHHHHcCCCCC
Q 000092 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIA--EINLP--AAQVAVGMGIPLW 397 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqgehpvtE~vt--GvDL~--~~qL~iA~G~pL~ 397 (2267)
|||+++.++|++||+|||||++|+|++|++++ |.|++ ..+++..||.|..
T Consensus 303 VDFfvd~ddgevYfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 303 VDLLHDLDADELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred EEEEEECCCCeEEEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 99999854688999999999999999998855 35554 5555677888865
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=289.82 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=160.5
Q ss_pred CCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000092 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1648 (2267)
Q Consensus 1569 g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ 1648 (2267)
.+|..+|.+.++..|.++ |||+|.+++ +||+|+|+++||||++||+|...++|+.|+.|+|.+.|+|+|+|.+
T Consensus 104 ~~Y~~rl~~a~~~t~~~d-gVVtG~G~I------~Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~ 176 (296)
T CHL00174 104 EPYKDRIDSYQKKTGLTD-AVQTGIGQL------NGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCA 176 (296)
T ss_pred cchHHHHHHHHhccCCCc-cEEEEEEEE------CCEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 347777888888888876 599999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc
Q 000092 1649 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1728 (2267)
Q Consensus 1649 ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~ 1728 (2267)
||||||| |++.+|+||+ + +...+.+ ++.
T Consensus 177 SGGARmQ--Eg~~sL~qma--------k-------~saa~~~-----------------------------------~~~ 204 (296)
T CHL00174 177 SGGARMQ--EGSLSLMQMA--------K-------ISSALYD-----------------------------------YQS 204 (296)
T ss_pred CCCcccc--ccchhhhhhH--------H-------HHHHHHH-----------------------------------HHH
Confidence 9999998 9999998776 0 0000111 111
Q ss_pred cccccccccccccCceEEEEEcCcccchhhhhhc-cCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccccc
Q 000092 1729 SGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR-LGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1729 sG~iag~~s~a~~~iptis~vtg~~~G~gAyl~~-lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~n 1807 (2267)
+| .+|+|+++||||+||+||.++ +||++||++++.|+|+||++|++++|+++ ++++|+++++.++
T Consensus 205 ~~-----------~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~l---pe~fq~ae~l~~~ 270 (296)
T CHL00174 205 NK-----------KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTV---PEGSQAAEYLFDK 270 (296)
T ss_pred cC-----------CCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCcC---CcccccHHHHHhC
Confidence 11 269999999999999888855 59999999999999999999999999999 7999999999999
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
|++|.+|+ ..+--..+.++|+++
T Consensus 271 G~vD~iV~-r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 271 GLFDLIVP-RNLLKGVLSELFQLH 293 (296)
T ss_pred cCceEEEc-HHHHHHHHHHHHHhh
Confidence 99999996 566666666666664
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=270.35 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=142.0
Q ss_pred CCChHHHhcccccCCCCcccccccCCCceeccc--cccc--eEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccc
Q 000092 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--GWAR--TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1934 (2267)
Q Consensus 1859 ~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~--~~a~--~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~ 1934 (2267)
...+|++|+. |||+ |+|+.. .|++ ++|||+|+|+|+||+||+++.+.. ..+
T Consensus 16 r~~are~I~~-----------L~D~--F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~------------~~d 70 (256)
T PRK12319 16 RLTTLDYATL-----------IFDD--FMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKN------------LQD 70 (256)
T ss_pred CCCHHHHHHH-----------hCch--heeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCc------------ccc
Confidence 4567778876 7885 999974 4664 699999999999999999965411 111
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC
Q 000092 1935 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1935 ~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~ 2014 (2267)
. ....+|+++|++++|++|++++|+++++|||+|+||+||..|...|..|+.+.+++++.+++..+||+|++|+ |++
T Consensus 71 ~-~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~--G~~ 147 (256)
T PRK12319 71 N-LKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIII--GEG 147 (256)
T ss_pred c-eeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEe--CCc
Confidence 1 2335799999999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred CchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchh
Q 000092 2015 RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 2015 ~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
+||+..+++ .+|+ ++|||++.++||+|||++.|.||+.
T Consensus 148 ~gGgA~a~~---~~D~--v~m~~~a~~~v~~pe~~a~il~~~~ 185 (256)
T PRK12319 148 GSGGALALA---VADQ--VWMLENTMYAVLSPEGFASILWKDG 185 (256)
T ss_pred CcHHHHHhh---cCCE--EEEecCceEEEcCHHHHHHHHhcCc
Confidence 776555554 3688 9999999999999999999999864
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=275.25 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=171.9
Q ss_pred CCChHHHhcccccCCCCcccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccc
Q 000092 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHE 1934 (2267)
Q Consensus 1859 ~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~ 1934 (2267)
....+++|.. ||| +|+|+..+|+ +++|||+|||+|+||+||++|++ .++.|
T Consensus 72 Rp~~~d~i~~-----------l~d--~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg------------~~~~e 126 (322)
T CHL00198 72 RPTTLDYIPY-----------ILD--EWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRG------------RNTKE 126 (322)
T ss_pred CCCHHHHHHH-----------HhH--HHHHHccccccCCCCceEEEEEEECCEEEEEEEecCC------------ccchh
Confidence 3456777776 788 4999999998 99999999999999999999864 22333
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC
Q 000092 1935 RVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1935 ~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~ 2014 (2267)
++ ...+|+++|++++|++|++++|+++++|||+|+||+||.+|..+|..|+.+.+++.+.+++..+||+|++|+ |++
T Consensus 127 ~~-~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVVi--Geg 203 (322)
T CHL00198 127 NV-LRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTII--GEG 203 (322)
T ss_pred hh-hhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEe--Ccc
Confidence 33 345689999999999999999999999999999999999999999999999999999999999999999999 776
Q ss_pred CchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000092 2015 RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQ 2094 (2267)
Q Consensus 2015 ~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~ 2094 (2267)
+||+..+++. +|+ ++||++|.++|++|||++.|.||+.... .+. +.
T Consensus 204 gsGGAlal~~---aD~--V~m~e~a~~sVisPEg~a~Il~~d~~~a--------------------------~~a-A~-- 249 (322)
T CHL00198 204 GSGGALGIGI---GDS--IMMLEYAVYTVATPEACAAILWKDSKKS--------------------------LDA-AE-- 249 (322)
T ss_pred cHHHHHhhhc---CCe--EEEeCCeEEEecCHHHHHHHHhcchhhH--------------------------HHH-HH--
Confidence 5554444442 688 9999999999999999999999987311 000 00
Q ss_pred HHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2095 QIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2095 ~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
.+.=||..+++.|+||+|||.. .....++.+|+..|.
T Consensus 250 ---------------------~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~ 291 (322)
T CHL00198 250 ---------------------ALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLI 291 (322)
T ss_pred ---------------------HcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHH
Confidence 1122789999999999999854 344567777777764
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=279.04 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=164.1
Q ss_pred cccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000092 1880 IFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1955 (2267)
Q Consensus 1880 l~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ara 1955 (2267)
||| +|+|+..+|+ +++|||+|||+|+||+||+++++.. ..++. .+.+|+++|++++|++||
T Consensus 149 i~d--df~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~------------~ke~~-~rnfG~~~peGyRKAlR~ 213 (431)
T PLN03230 149 MTD--KWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRN------------TKENI-YRNFAMPQPNGYRKALRF 213 (431)
T ss_pred hhh--HHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcc------------ccccc-ccCCCCCCHHHHHHHHHH
Confidence 787 5999999999 9999999999999999999986532 22332 333589999999999999
Q ss_pred HHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC-CchhHhhhccccCCccceee
Q 000092 1956 LMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDSRINSDHIEMY 2034 (2267)
Q Consensus 1956 i~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~-~GGa~vv~~~~~n~d~~~~~ 2034 (2267)
+++|++|++|||+|+||+||.+|..+|..|+.+++++++.+++..+||+|++|+ |++ .|||+.+.. .|+ +|
T Consensus 214 mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVVi--GeGgSGGAlalg~----aD~--Vl 285 (431)
T PLN03230 214 MRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVI--GEGGSGGALAIGC----GNR--ML 285 (431)
T ss_pred HHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--CCCCcHHHHHhhc----CCE--EE
Confidence 999999999999999999999999999999999999999999999999999999 665 445554432 377 99
Q ss_pred cccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHh
Q 000092 2035 ADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKF 2114 (2267)
Q Consensus 2035 A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~f 2114 (2267)
|||+|.++|++|||++.|.|++... +++.+
T Consensus 286 Mle~A~ysVisPEgaAsILwkd~~~--------------------------A~eAA------------------------ 315 (431)
T PLN03230 286 MMENAVYYVASPEACAAILWKSAAA--------------------------APKAA------------------------ 315 (431)
T ss_pred EecCCEEEecCHHHHHHHHhccccc--------------------------hHHHH------------------------
Confidence 9999999999999999999997621 00000
Q ss_pred HhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2115 AELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2115 adlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
+.+.-||..+++.|+||+||+.. .....++.+|+..|.
T Consensus 316 ealkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~ 358 (431)
T PLN03230 316 EALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVIL 358 (431)
T ss_pred HHcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHH
Confidence 02234789999999999999864 335567777776654
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=263.04 Aligned_cols=183 Identities=23% Similarity=0.296 Sum_probs=157.9
Q ss_pred cccccccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQA 1955 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ara 1955 (2267)
|+..|||+++|+|... ++|||+|||+|+||+||+++. +..++.++++|.|+|
T Consensus 5 ~l~~l~d~~~~~e~~~----~vv~G~arl~G~~V~vIa~~~------------------------~~~~g~~~~~k~A~~ 56 (238)
T TIGR03134 5 WLAALFPNGHEVAGDP----GVLVGSAELAGGKVTVIGVVP------------------------DAEVGLDEALALAQA 56 (238)
T ss_pred HHHHHcCCCcEEecCC----cEEEEEEEECCEEEEEEEECC------------------------CCcCChHHHHHHHHH
Confidence 5556999999999986 999999999999999999952 226777899999999
Q ss_pred HHHh-c-ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC---CCEEEEEccCCcCCchhHhhhccccCCcc
Q 000092 1956 LMDF-N-REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSDH 2030 (2267)
Q Consensus 1956 i~~a-~-~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~vI~~~g~~~GGa~vv~~~~~n~d~ 2030 (2267)
+..| + +|++|||+|+|++||.+|.++|..|+.+++|++++++..++ +|+|++|+ |+++||+|.+++ +++|.
T Consensus 57 v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~--g~a~ggg~lamg--~~ad~ 132 (238)
T TIGR03134 57 VLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIY--GKAISGAFLAHG--LQADR 132 (238)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEe--CCccHHHHHHHc--cCcCe
Confidence 9996 5 59999999999999999999999999999999999999887 99999999 888999999995 56788
Q ss_pred ceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHH
Q 000092 2031 IEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQV 2110 (2267)
Q Consensus 2031 ~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~ 2110 (2267)
+||||+|.++||+||+++.|.||+.+.+ .++
T Consensus 133 --v~Alp~A~i~vm~~e~aa~I~~~~~~~~-----------------------------------------------~e~ 163 (238)
T TIGR03134 133 --IIALPGAMVHVMDLESMARVTKRSVEEL-----------------------------------------------EAL 163 (238)
T ss_pred --EEEcCCcEEEecCHHHHHHHHccCHhHH-----------------------------------------------HHH
Confidence 9999999999999999999999865210 011
Q ss_pred HHHhHhhhCcHHHHHHcCCcccccCccch
Q 000092 2111 ATKFAELHDTSLRMAAKGVIKEVVDWDKS 2139 (2267)
Q Consensus 2111 a~~fadlhdt~~rm~~~G~Id~ii~~~~~ 2139 (2267)
|..|..+...+..+.+.|+||+||++.+.
T Consensus 164 a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 164 AKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 23334445567899999999999998884
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=267.49 Aligned_cols=271 Identities=16% Similarity=0.217 Sum_probs=204.6
Q ss_pred EEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000092 50 SILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 50 kVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dv 120 (2267)
||.|+=+|. .|..+.+++++.||+++ .. |.+..
T Consensus 5 ~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~-----------~~--~~~~~------------------------- 46 (296)
T PRK14569 5 KIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAV-----------GV--DASGK------------------------- 46 (296)
T ss_pred EEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEE-----------EE--cCCch-------------------------
Confidence 555555553 67889999999999985 23 21100
Q ss_pred HHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCC
Q 000092 121 QLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP 199 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~ 199 (2267)
.++....+.++|.|+++. |...|+..++..|+..||+++|++++++..+.||..+|++++++|||||+|..
T Consensus 47 -~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~------- 118 (296)
T PRK14569 47 -ELVAKLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKF------- 118 (296)
T ss_pred -hHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEE-------
Confidence 011222345789999876 56678899999999999999999999999999999999999999999999754
Q ss_pred CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000092 200 ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2267)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g 279 (2267)
+.+. ....+.+|||+||||..||+|+||.+|+|.+||.++++.+... ++++||+|++|
T Consensus 119 ----------------~~~~---~~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~---~~~lvEefI~G 176 (296)
T PRK14569 119 ----------------LTDK---LVAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTG 176 (296)
T ss_pred ----------------Echh---hhhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhc---CCEEEEccccc
Confidence 1111 1234678999999999999999999999999999999887532 47999999986
Q ss_pred cceeeEEEEEcCCCCEEEecccc--cccc-cccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRD--CSVQ-RRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rd--csvq-rr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
+|++|.++.++....+.+.... .... ....+.....|+. ++++..+++++.|.+++++||++|.++|||++++ +
T Consensus 177 -~E~tv~vl~~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~ 253 (296)
T PRK14569 177 -KEITVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDD-R 253 (296)
T ss_pred -EEEEEEEECCcCcceEEEecCCCcCChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-C
Confidence 8999999976532222221111 1110 1122333456775 6788889999999999999999999999999983 6
Q ss_pred CcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHHH
Q 000092 357 GEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 357 g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~iA 391 (2267)
|++||+|||||++-. .|......|+|+.++..++.
T Consensus 254 g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 254 GNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred CCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999854 35555567888888766553
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=284.53 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=207.9
Q ss_pred CccEEEEECchH-HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC-CCCCccCHHHHH
Q 000092 47 PIHSILIANNGM-AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT-NNNNYANVQLIV 124 (2267)
Q Consensus 47 ~~kkVLIan~G~-~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~-~~~~Y~dvd~Il 124 (2267)
..+||||+|++. .++.++|++++.|++++ ++..+....+.+.+++|+++.+|... ..+.| ++.|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi-----------~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~ 69 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVI-----------LADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALL 69 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-----------EEeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHH
Confidence 458899999875 79999999999999986 44333333446678999999986422 23456 89999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
++++++++|+|+|+.+.........+.++ .++.+++|++++++.+.||..++++++++|||+|++..
T Consensus 70 ~i~~~~~id~vIP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~------------ 136 (389)
T PRK06849 70 SIVQRENIDLLIPTCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYL------------ 136 (389)
T ss_pred HHHHHcCCCEEEECChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEE------------
Confidence 99999999999999763311111122232 35778899999999999999999999999999999776
Q ss_pred ccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 205 TIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 205 ~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++..+. |||+|+||..|+||.|+.++.+.+++... . .....++++||||+| .++
T Consensus 137 -----------v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~----~-~~~~~~~ivQe~I~G-~e~ 199 (389)
T PRK06849 137 -----------ITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKEL----P-ISKDNPWVMQEFIQG-KEY 199 (389)
T ss_pred -----------eCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhccc----c-cCCCCCeEEEEEecC-CeE
Confidence 67888888877776 99999999999999999999995544321 1 122357999999998 577
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
++..+.. +|+++.... ..+.+ ....+......+...++|++.+.++++++||.|.+++||+++ ++|++|+||
T Consensus 200 ~~~~~~~-~G~v~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~-~~g~~~~iE 271 (389)
T PRK06849 200 CSYSIVR-SGELRAHSC----YKPEY--CAGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIET-ENGDAYPIE 271 (389)
T ss_pred EEEEEEE-CCEEEEEEE----eeccc--cCCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEEC-CCCCEEEEE
Confidence 7777764 377765422 11111 000000000111123689999999999999999999999998 478999999
Q ss_pred eCccCcCCcceeh
Q 000092 364 LNPRLQVEHPVTE 376 (2267)
Q Consensus 364 INpRlqgehpvtE 376 (2267)
||||+++..+++.
T Consensus 272 iNpR~~~g~~l~~ 284 (389)
T PRK06849 272 CNPRTTSGLHLFD 284 (389)
T ss_pred ecCCCCceeEEcC
Confidence 9999998887765
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=273.28 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=148.4
Q ss_pred CceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcC-----CCEEEEEcCCCCCCCchhh
Q 000092 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKK-----LPLIYLAANSGARIGVAEE 1659 (2267)
Q Consensus 1585 n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~-----iP~I~l~~ssGARi~~~e~ 1659 (2267)
-..|||++.+++ +||+|+|+++|+||++||+|+.+++|+.+++++|.+.+ +|+|+|.+|||+||+ |+
T Consensus 54 ~~dGvV~G~G~I------~Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlq--Eg 125 (301)
T PRK07189 54 FDDGVVVGKGTL------DGRPVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQ--EA 125 (301)
T ss_pred CCCcEEEEEEEE------CCEEEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCcc--ch
Confidence 357899999977 99999999999999999999999999999999999999 999999999999998 77
Q ss_pred hhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccccccccccc
Q 000092 1660 VKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRA 1739 (2267)
Q Consensus 1660 ~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a 1739 (2267)
..++++++ .+| . .+.+.||.
T Consensus 126 ~~~L~~~a------------~i~------~----------------------------------~~~~ls~~-------- 145 (301)
T PRK07189 126 NAGLAAIA------------EIM------R----------------------------------AIVDLRAA-------- 145 (301)
T ss_pred HHHHHHHH------------HHH------H----------------------------------HHHHHhCC--------
Confidence 77764433 111 0 11122232
Q ss_pred ccCceEEEEEcCc--ccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccccc-------CCccccccccCce
Q 000092 1740 YKETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQ-------LGGPKIMATNGVV 1810 (2267)
Q Consensus 1740 ~~~iptis~vtg~--~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~-------lGG~~i~~~nGv~ 1810 (2267)
||+|++++|+ |+||+||++.+||++||++++.|+|+||++|+.++|.+.| ++++ +||.+.+ .||++
T Consensus 146 ---VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~-d~~d~~~vw~~lGG~h~~-~sG~~ 220 (301)
T PRK07189 146 ---VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEF-DSRDRALVWRTTGGKHRY-LSGLA 220 (301)
T ss_pred ---CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCccc-CHHHhcccccccCcceee-ecccc
Confidence 6999999999 9999999999999999999999999999999999996554 4566 9997443 59999
Q ss_pred EEEecCcHHHHHHHHHHHhcCCC
Q 000092 1811 HLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1811 d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
|.+++||.++++. ++++|+..
T Consensus 221 D~~v~dd~~a~~~--~~~~~~~~ 241 (301)
T PRK07189 221 DALVDDDVAAFRA--AALALLAR 241 (301)
T ss_pred eEEeCCHHHHHHH--HHHHHHhc
Confidence 9999999999988 77899864
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=268.46 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=145.1
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHH-----cCCCEEEEEcCCCCCCCchhhh
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACA-----KKLPLIYLAANSGARIGVAEEV 1660 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~-----~~iP~I~l~~ssGARi~~~e~~ 1660 (2267)
..|||++..++ +||+|+|+++|+||++||+|+.+++|+.+++++|.+ .++|+|+|.+|||+||+ |++
T Consensus 46 ~dgvV~G~G~I------~Gr~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlq--Eg~ 117 (274)
T TIGR03133 46 DDGVVVGRGTI------DGKPVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQ--EAN 117 (274)
T ss_pred CCeEEEEEEEE------CCEEEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChh--hhH
Confidence 46899999977 999999999999999999999999999999999998 77899999999999998 878
Q ss_pred hhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccc
Q 000092 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAY 1740 (2267)
Q Consensus 1661 ~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~ 1740 (2267)
.++++++ .+| . .+.+.||.
T Consensus 118 ~~L~~~a------------~i~------~----------------------------------~~~~ls~~--------- 136 (274)
T TIGR03133 118 AGLIAIA------------EIM------R----------------------------------AILDARAA--------- 136 (274)
T ss_pred HHHHHHH------------HHH------H----------------------------------HHHHHhCC---------
Confidence 7775443 111 0 01122222
Q ss_pred cCceEEEEEcCc--ccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccc------cCCccccccccCceEE
Q 000092 1741 KETFTLTYVTGR--TVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM------QLGGPKIMATNGVVHL 1812 (2267)
Q Consensus 1741 ~~iptis~vtg~--~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~------~lGG~~i~~~nGv~d~ 1812 (2267)
||+|++++|| |+||+||.+.+||++||++++.|+|+||++|+.++|++.+++.+ .+||++. ..+|++|.
T Consensus 137 --vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~-~~sG~~D~ 213 (274)
T TIGR03133 137 --VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHR-FLSGDADV 213 (274)
T ss_pred --CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhH-hhcccceE
Confidence 6999999999 89999999999999999999999999999999999987665543 5999964 45999999
Q ss_pred EecCcHHHHHHHH-HHHh
Q 000092 1813 TVSDDLEGISAIL-KWLS 1829 (2267)
Q Consensus 1813 ~v~dd~e~~~~i~-~~Ls 1829 (2267)
+++||.++++... ++|.
T Consensus 214 ~v~dd~~a~~~~~~~~l~ 231 (274)
T TIGR03133 214 LVEDDVDAFRAAVIAALA 231 (274)
T ss_pred EeCCHHHHHHHHHHHHHh
Confidence 9999999987654 3554
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=254.66 Aligned_cols=333 Identities=20% Similarity=0.227 Sum_probs=245.9
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~ 194 (2267)
.|.+.|+++|++.++|.++.| .|.|. +.+.|++.||..+||+.+++++-++|..+|.+++++|||++.|..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVG----PE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~-- 123 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVG----PEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEV-- 123 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEEC----CcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccc--
Confidence 578999999999999999999 33222 348899999999999999999999999999999999999998765
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCc
Q 000092 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSP 270 (2267)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~ 270 (2267)
+++.+++.++.++.|.|++|||..-.+||||.++.+.++..++.+.+... ..+..
T Consensus 124 ---------------------f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~ 182 (428)
T COG0151 124 ---------------------FTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGAR 182 (428)
T ss_pred ---------------------cCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCc
Confidence 77999999999999999999999999999999999999999998877654 23467
Q ss_pred EEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHHH-HHHHHHH
Q 000092 271 IFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLE-QAARRLA 337 (2267)
Q Consensus 271 I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL~-~~A~rla 337 (2267)
++||+|++| .|+|++++.|+. +++.+. .-..|.+..+ .+|+|.+++++.++.. +.....+
T Consensus 183 VVIEEfL~G-eE~S~~a~~DG~-~v~p~p-----~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv 255 (428)
T COG0151 183 VVIEEFLDG-EEFSLQAFVDGK-TVIPMP-----TAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTV 255 (428)
T ss_pred EEEEecccc-eEEEEEEEEcCC-eEEECc-----cccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999988 799999999974 444442 2234555554 2688989988776655 5555544
Q ss_pred HHc-----CceeeeEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCC
Q 000092 338 KCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHG 411 (2267)
Q Consensus 338 ~aL-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~ 411 (2267)
+++ .|+|+....++++ .++|++||.|.|++- |....-...--||.+..+.++.|.--.
T Consensus 256 ~gm~~EG~~f~GvLy~glMlt--~~GPkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~L~~-------------- 319 (428)
T COG0151 256 EGMAKEGYPFRGVLYAGLMLT--ADGPKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGKLDE-------------- 319 (428)
T ss_pred HHHHHcCCCceEEEEeEEEEc--CCCcEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCCccc--------------
Confidence 444 5689999999999 455999999999973 322222335679999999999984221
Q ss_pred CcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccc-cCCCcEEEE-EeeeeC-Cccccc
Q 000092 412 GVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSF-KSKPNVWAY-FSVKSG-GGIHEF 488 (2267)
Q Consensus 412 ~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~-~s~~~V~~~-~~v~~G-~~i~~~ 488 (2267)
..+.|. +.-..-+.+++++-|+++| ..|....+.. ....++.++ .++..- +.--..
T Consensus 320 -----------~~~~~~----~~~a~v~vvlA~~GYP~~~------~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~lvt 378 (428)
T COG0151 320 -----------VEILFW----DKGAAVGVVLAAEGYPGDP------EKGDVITGDEEAEEEGAKVFHAGVKLDDGGQLVT 378 (428)
T ss_pred -----------cchhhc----cCCceEEEEEecCCCCCCC------CCCCEEecChhhcccCcEEEEeeEeccCCceEEe
Confidence 011111 1112346677777777775 4453322221 111133333 333322 111112
Q ss_pred CCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 489 SDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 489 ~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
..++.=.|++.|+|.+||+++++.+++.++..|
T Consensus 379 ~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g 411 (428)
T COG0151 379 SGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDG 411 (428)
T ss_pred cCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCC
Confidence 345566799999999999999999999999987
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-26 Score=268.95 Aligned_cols=188 Identities=17% Similarity=0.249 Sum_probs=161.7
Q ss_pred CCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcC
Q 000092 1570 TWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAAN 1649 (2267)
Q Consensus 1570 ~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~s 1649 (2267)
+|..+|...++..|.++ |||++.+++ +|++|+|++||+||++||+|...++|+.|++++|.+.++|+|+|.+|
T Consensus 92 ~Y~~~l~~~~~~t~~~d-~vVtG~g~I------~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dS 164 (285)
T TIGR00515 92 KYKDRIAKAQKETGEKD-AVVTGKGTL------YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSAS 164 (285)
T ss_pred chhHHHHHHhhccCCCC-cEEEEEEEE------CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36667777777778765 699999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccc
Q 000092 1650 SGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGS 1729 (2267)
Q Consensus 1650 sGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~s 1729 (2267)
|||||+ |++.+++|++ +- .....++ +.
T Consensus 165 gGaRmq--Eg~~sL~~~a--------k~-------~~~~~~~-----------------------------------~~- 191 (285)
T TIGR00515 165 GGARMQ--EALLSLMQMA--------KT-------SAALAKM-----------------------------------SE- 191 (285)
T ss_pred CCcccc--cchhHHHhHH--------HH-------HHHHHHH-----------------------------------Hc-
Confidence 999998 9999988766 10 0011111 11
Q ss_pred ccccccccccccCceEEEEEcCcccchhhhhh-ccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccC
Q 000092 1730 GAIAGAYSRAYKETFTLTYVTGRTVGIGAYLA-RLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNG 1808 (2267)
Q Consensus 1730 G~iag~~s~a~~~iptis~vtg~~~G~gAyl~-~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nG 1808 (2267)
..+|+|+++||||+||++|.+ .++|++||++++.|+|+||++|++++|+++ ++++|+++++..+|
T Consensus 192 -----------~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~l---pe~~q~ae~~~~~G 257 (285)
T TIGR00515 192 -----------RGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PEGFQTSEFLLEHG 257 (285)
T ss_pred -----------CCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCcc---chhcCCHHHHHhCC
Confidence 126999999999999977765 599999999999999999999999999999 69999999999999
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
.+|.+++ ..+....+.++|+++-
T Consensus 258 ~vD~iv~-~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 258 AIDMIVH-RPEMKKTLASLLAKLQ 280 (285)
T ss_pred CCcEEEC-cHHHHHHHHHHHHHHh
Confidence 9999995 7888888999998763
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=260.95 Aligned_cols=276 Identities=20% Similarity=0.297 Sum_probs=208.7
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000092 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 47 ~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y 117 (2267)
|.+||.|+=+|. .+..+++++++.||++. ....+ .
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~-----------~i~~~--~----------------------- 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH-----------PIDPG--E----------------------- 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEE-----------EEecC--c-----------------------
Confidence 445666665442 67889999999999985 22111 0
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCcc
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~ 196 (2267)
.+++..+..++|.|++.. |...++..++..|+..|++++|++..++..+.||..++++++++|||+|+|..
T Consensus 47 ----~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~---- 118 (304)
T PRK01372 47 ----DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIV---- 118 (304)
T ss_pred ----chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE----
Confidence 123344556899999875 44567888899999999999999999999999999999999999999999876
Q ss_pred CCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEe
Q 000092 197 IPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKV 276 (2267)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEey 276 (2267)
+.+.+++...++.+|||+||||..|+||+||.++++.+++.++++++.. .+.+++||+|
T Consensus 119 -------------------~~~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~~lvEe~ 177 (304)
T PRK01372 119 -------------------LTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK--YDDEVLVEKY 177 (304)
T ss_pred -------------------EeCcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCcEEEEcc
Confidence 5666777788889999999999999999999999999999999887742 2568999999
Q ss_pred ccccceeeEEEEEcCCCCEEEecccc--ccccccc--ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGNVAALHSRD--CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~vi~l~~Rd--csvqrr~--qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
++| +|++|.++++....++...... +...... .......|+ .++++..++|++.+.++++++|+.|.+++||++
T Consensus 178 i~G-~E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~ 255 (304)
T PRK01372 178 IKG-RELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFML 255 (304)
T ss_pred cCC-EEEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 986 8999999877543333221110 0010001 011223454 478888999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
++ +|++||||+|||++... +......|+|+.++...+
T Consensus 256 ~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 256 DE-DGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRI 296 (304)
T ss_pred cC-CCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 84 58899999999987532 223334588877666554
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-25 Score=268.82 Aligned_cols=231 Identities=21% Similarity=0.231 Sum_probs=184.4
Q ss_pred CCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 131 RVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 131 ~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
++|.|||. .|...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|||..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~----------------- 143 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVV----------------- 143 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-----------------
Confidence 68999998 478889999999999999999999999999999999999999999999999865
Q ss_pred cccccccCCH----HHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000092 210 VYRQACVYTT----EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 210 ~~~~~~V~s~----eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieV 285 (2267)
+.+. .......+.+|||+||||..|+||.||.+|++.+|+.++++++... +..++||+|++| +|++|
T Consensus 144 ------~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEefI~G-~E~~v 214 (333)
T PRK01966 144 ------LTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY--DRKVLVEQGIKG-REIEC 214 (333)
T ss_pred ------EeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCcCC-EEEEE
Confidence 1111 2234456789999999999999999999999999999999987644 468999999987 99999
Q ss_pred EEEEcCCCCEEEecccccc--cccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 286 QLLCDQYGNVAALHSRDCS--VQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcs--vqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
.++++ .+.+..+.+..+. +.....|. ....|+. +++++.+++++.|.+++++||++|.++|||++++ +|+
T Consensus 215 ~vl~~-~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g~ 291 (333)
T PRK01966 215 AVLGN-DPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DGE 291 (333)
T ss_pred EEECC-CCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCC
Confidence 99987 3443322222221 11111122 2234664 8899999999999999999999999999999984 678
Q ss_pred EEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 359 YYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 359 ~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+||||+|||++.. .|.....+|+|+.++.-++
T Consensus 292 ~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 292 IYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred EEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999854 2334456788887766544
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=265.09 Aligned_cols=189 Identities=17% Similarity=0.247 Sum_probs=162.6
Q ss_pred CCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000092 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1648 (2267)
Q Consensus 1569 g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ 1648 (2267)
..|..+|.+.++..|.+++ ||++.+++ +||+|+|++||+||++||+|...++|+.|++++|.+.++|+|+|.+
T Consensus 92 ~~Y~~~l~~~~~~t~~~d~-vVtG~g~I------~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~d 164 (292)
T PRK05654 92 KKYKDRLKAAQKKTGLKDA-VVTGKGTI------EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSA 164 (292)
T ss_pred cccchHHHHhhhccCCCCc-EEEEEEEE------CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3477788888888888764 99999977 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc
Q 000092 1649 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1728 (2267)
Q Consensus 1649 ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~ 1728 (2267)
|||+||| |++.+++||+ +.+ ....++ +.
T Consensus 165 sgGarmq--Egi~sL~~~a--------k~~-------~a~~~~-----------------------------------~~ 192 (292)
T PRK05654 165 SGGARMQ--EGLLSLMQMA--------KTS-------AALKRL-----------------------------------SE 192 (292)
T ss_pred CCCcchh--hhhhHHHhHH--------HHH-------HHHHHH-----------------------------------Hc
Confidence 9999998 9999998766 111 001111 11
Q ss_pred cccccccccccccCceEEEEEcCcccchhhhh-hccCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccccc
Q 000092 1729 SGAIAGAYSRAYKETFTLTYVTGRTVGIGAYL-ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1729 sG~iag~~s~a~~~iptis~vtg~~~G~gAyl-~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~n 1807 (2267)
..+|+|+++||||+||++|. +.++|++||.+++.|+|+||+++++++|+++ ++++|+++++..+
T Consensus 193 ------------a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e~l---pe~~~~ae~~~~~ 257 (292)
T PRK05654 193 ------------AGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVREKL---PEGFQRAEFLLEH 257 (292)
T ss_pred ------------CCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhhhh---hhhhcCHHHHHhC
Confidence 13799999999999997776 5569999999999999999999999999988 6899999999999
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.+++ ..|....+.++|+++.
T Consensus 258 G~vD~Vv~-~~e~r~~l~~~L~~~~ 281 (292)
T PRK05654 258 GAIDMIVH-RRELRDTLASLLALHT 281 (292)
T ss_pred CCCcEEEC-HHHHHHHHHHHHHHHh
Confidence 99999995 7888888999999874
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=259.68 Aligned_cols=238 Identities=20% Similarity=0.263 Sum_probs=180.0
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|+|||.. |...++..++..|+..|++++|+++.++..+.||..++++++++|||+|+|.. +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~-------------~~- 127 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIV-------------LT- 127 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE-------------Ee-
Confidence 5689999964 45567888999999999999999999999999999999999999999999875 00
Q ss_pred ccccccccCCHHHH--HHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 209 DVYRQACVYTTEEA--IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 209 ~~~~~~~V~s~eea--~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
....+.+++ ..+.+.++||+|+||..|+||+||.+|+|.+++.++++.+... +.+++||+|++| +|++|.
T Consensus 128 -----~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvEe~i~G-~e~~v~ 199 (315)
T TIGR01205 128 -----QNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY--DEEVLVEQFIKG-RELEVS 199 (315)
T ss_pred -----cccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc--CCcEEEEcCCCC-EEEEEE
Confidence 001111222 2344679999999999999999999999999999999887643 468999999985 899999
Q ss_pred EEEcCCCCE-EEecccccccccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 287 LLCDQYGNV-AALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 287 vl~D~~G~v-i~l~~Rdcsvqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+++++.+.. +....+.+.+.....|. ....|+. ++++..++|++.+.++++++|+.|.++|||++++ +|++|
T Consensus 200 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~~~ 277 (315)
T TIGR01205 200 ILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLDE-EGEIY 277 (315)
T ss_pred EECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CCCEE
Confidence 998654322 22222211111111111 1224554 7889999999999999999999999999999984 56899
Q ss_pred EeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
|+|+|||++... |..-...|+|..++...+.
T Consensus 278 viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 278 LNEINTIPGMTAISLFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred EEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHH
Confidence 999999987542 2233456888887766543
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-25 Score=277.25 Aligned_cols=203 Identities=15% Similarity=0.159 Sum_probs=163.4
Q ss_pred ccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHH
Q 000092 1877 IGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKT 1952 (2267)
Q Consensus 1877 ~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ 1952 (2267)
+..+|| +|+|+.++|+ +++|||+|||+|+||+|||++++. +..++ +.+.+|++.|.+++|+
T Consensus 167 i~~i~d--df~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~------------~tke~-~~rnfG~~~peGyRKA 231 (762)
T PLN03229 167 IFNITD--KFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGR------------NTKEN-IMRNFGMPTPHGYRKA 231 (762)
T ss_pred HHHHHH--HHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCc------------ccccc-ccccCCCCCHHHHHHH
Confidence 334666 5999999988 899999999999999999998642 22233 3345789999999999
Q ss_pred HHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hhHhhhccccCCccc
Q 000092 1953 AQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHI 2031 (2267)
Q Consensus 1953 arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~ 2031 (2267)
+|++++|++|++|||+|+|++||.+|...|..|+.+++++.+.+++..+||+|++|+ |+++| |||.+.. +|+
T Consensus 232 lRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVVi--GeggSGGAlA~g~----aD~- 304 (762)
T PLN03229 232 LRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVI--GEGGSGGALAIGC----ANK- 304 (762)
T ss_pred HHHHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhhc----CCE-
Confidence 999999999999999999999999999999999999999999999999999999999 66654 5554433 587
Q ss_pred eeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHH
Q 000092 2032 EMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVA 2111 (2267)
Q Consensus 2032 ~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a 2111 (2267)
++|||+|.++|++|||++.|.||+.... .+. +-
T Consensus 305 -VlMle~A~~sVisPEgaAsILwkd~~~A--------------------------~eA-Ae------------------- 337 (762)
T PLN03229 305 -LLMLENAVFYVASPEACAAILWKSAKAA--------------------------PKA-AE------------------- 337 (762)
T ss_pred -EEEecCCeEEecCHHHHHHHHhcCcccH--------------------------HHH-HH-------------------
Confidence 9999999999999999999999986311 000 00
Q ss_pred HHhHhhhCcHHHHHHcCCcccccCcc-----chHHHHHHHHHHHHh
Q 000092 2112 TKFAELHDTSLRMAAKGVIKEVVDWD-----KSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2112 ~~fadlhdt~~rm~~~G~Id~ii~~~-----~~R~~~~~~L~r~l~ 2152 (2267)
.+.=||..|.+.|+||.|||.. .-...++.+|+..|.
T Consensus 338 ----~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~ 379 (762)
T PLN03229 338 ----KLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAIN 379 (762)
T ss_pred ----HcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHH
Confidence 1222789999999999999864 333445666665543
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=263.30 Aligned_cols=230 Identities=21% Similarity=0.242 Sum_probs=179.8
Q ss_pred cCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.|+|. +|...|+..++..|+..|++++|+++.+...+.||..++++++++|||+|+|..
T Consensus 89 ~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~---------------- 152 (343)
T PRK14568 89 IRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWT---------------- 152 (343)
T ss_pred ccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE----------------
Confidence 568999997 677889999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+.+.++. ..+.++||+||||..||||+||.+|+|.+||.++++.+... +..++||+|++| +|++|.++
T Consensus 153 -------~~~~~~~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~sv~vl 220 (343)
T PRK14568 153 -------VTADERP--DAATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY--DSKVLIEEAVVG-SEVGCAVL 220 (343)
T ss_pred -------EECCchh--hhhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEECCcCC-EEEEEEEE
Confidence 2222221 13578999999999999999999999999999999887644 468999999987 89999999
Q ss_pred EcCCCCEEEeccccc---ccccccceEE---------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 289 CDQYGNVAALHSRDC---SVQRRHQKII---------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdc---svqrr~qKii---------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
+++.+..+.-..+-+ .+.+.++|.. ...|+. ++++..+++++.|.++++++|+.|.++|||++++ +
T Consensus 221 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 221 GNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred cCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 875432221111100 1222233321 234665 7899999999999999999999999999999984 7
Q ss_pred CcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHH
Q 000092 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~ 389 (2267)
|.+||+||||+++... |..-...|+++.++.-+
T Consensus 299 g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 299 GTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred CCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 8899999999998542 22223456666655443
|
|
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=259.60 Aligned_cols=238 Identities=19% Similarity=0.246 Sum_probs=183.6
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
..+|.++++. |...|+..++..|+..|++++|+++.++..+.||..+|++++++|||+|+|.. ++.
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~-------------~~~ 153 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFE-------------LEK 153 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-------------EEc
Confidence 4678888864 67779999999999999999999999999999999999999999999999865 000
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
.....+.++..+..+++|||+||||..||+|+||.+|+|.+||..+++.+... +.+++||+||+| +|++|.++
T Consensus 154 ----~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~--~~~vlVEefI~G-~E~sv~vi 226 (347)
T PRK14572 154 ----LKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES--DSKVMSQSFLSG-TEVSCGVL 226 (347)
T ss_pred ----cccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEEcCccc-EEEEEEEE
Confidence 00123445555556789999999999999999999999999999999988642 568999999987 89999999
Q ss_pred EcCC-C--CEEEeccccccc-------cccc--ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 289 CDQY-G--NVAALHSRDCSV-------QRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 289 ~D~~-G--~vi~l~~Rdcsv-------qrr~--qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
++.. | +.+.+...+... ..++ .......|+. +++++.+++++.|.+++++||+.|.++|||+++ +
T Consensus 227 ~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~--~ 303 (347)
T PRK14572 227 ERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV--D 303 (347)
T ss_pred eCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE--C
Confidence 8532 2 333333322111 0011 0122335765 789999999999999999999999999999998 6
Q ss_pred CcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
|++||+|+|++++... |..-...|+++.++.-++
T Consensus 304 ~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 304 GEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999998542 333335677777665443
|
|
| >PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=229.79 Aligned_cols=107 Identities=31% Similarity=0.531 Sum_probs=102.9
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+||||||||.++|.|++|+|+.+.+|++++||++.++.+|..|+++||||+||||+||.||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G- 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG- 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES-
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2267)
++||++||++||++|+|++|+++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 9999999999999999999999999997
|
It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A .... |
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=260.10 Aligned_cols=240 Identities=17% Similarity=0.214 Sum_probs=185.4
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.|+|.. |...|+..++..|+..||+++|++..+...+.||..+|++++++|||||||.. +.
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~----~~---------- 151 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIG----FR---------- 151 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEE----Ee----------
Confidence 4689999875 56779999999999999999999999999999999999999999999999865 00
Q ss_pred ccccccccCCHHHHHHH-HhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 209 DVYRQACVYTTEEAIAS-CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~-a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
......+.+++.+. .+.+|||+||||..+|+|.||.+|++.+||.++++.+... +..++||+||+| +|++|.+
T Consensus 152 ---~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~--~~~vlVEefI~G-rEi~v~V 225 (364)
T PRK14570 152 ---KYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY--DLTVVIEKFIEA-REIECSV 225 (364)
T ss_pred ---ccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEECCcCC-EEEEEEE
Confidence 00012244555443 4679999999999999999999999999999999988754 457999999985 9999999
Q ss_pred EEcCCCCEEEecccc-----c-cccc-----ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 288 LCDQYGNVAALHSRD-----C-SVQR-----RHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rd-----c-svqr-----r~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
+++....+....+.. + +... ..+......|+. +++++.+++++.|.++.++||++|.++|||++++++
T Consensus 226 lg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~ 304 (364)
T PRK14570 226 IGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDT 304 (364)
T ss_pred ECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCC
Confidence 987543333322211 0 0000 012223346776 899999999999999999999999999999998545
Q ss_pred CcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 357 GEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 357 g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
|++||+|+||+++-.. |..-...|+++.++.-++
T Consensus 305 g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 305 GLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred CcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999998542 333334688777665443
|
|
| >smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-25 Score=225.51 Aligned_cols=107 Identities=32% Similarity=0.610 Sum_probs=105.3
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
+||||||||.++|.|++|+|+.+++|++++||++.++.+|..|+++||||+||||+||+||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G- 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG- 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld 550 (2267)
++||++||+.||.+|+|++|+++|+|||
T Consensus 80 v~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 9999999999999999999999999996
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=246.23 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=157.9
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceeccc---------------------------cccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------------------~~a~~vVtG~ 1901 (2267)
.++|. ....+|++|+. |+|+|||.|+.. +.+++||||+
T Consensus 47 ~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~ 115 (292)
T PRK05654 47 NVCPKCGHHMRISARERLDL-----------LLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGK 115 (292)
T ss_pred CCCCCCCCCeeCCHHHHHHH-----------HccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEE
Confidence 34665 55688888886 899999999964 1248999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||+|+|+|++++ ||+++..+++|++|+++.|+++++|||+|+|++|+ .
T Consensus 116 g~I~G~~V~v~a~D~~f~---------------------gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGa-----r 169 (292)
T PRK05654 116 GTIEGMPVVLAVMDFSFM---------------------GGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGA-----R 169 (292)
T ss_pred EEECCEEEEEEEEecccc---------------------cCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----c
Confidence 999999999999998877 89999999999999999999999999999999996 5
Q ss_pred hhhchHH--HHHHH---HHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcch
Q 000092 1982 LFEGILQ--AGSTI---VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056 (2267)
Q Consensus 1982 e~~gilk--~ga~i---v~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~ 2056 (2267)
|++|++. .++++ +..++.+++|+|++++ |.++||+...+. +.+|+ ++|||+|++|++||+.+..
T Consensus 170 mqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprvie~----- 238 (292)
T PRK05654 170 MQEGLLSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFA--MLGDI--IIAEPKALIGFAGPRVIEQ----- 238 (292)
T ss_pred hhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCCchHHHHHHH--HcCCE--EEEecCcEEEecCHHHHHh-----
Confidence 6777754 44564 4457778899999999 788888655543 35788 9999999999999943310
Q ss_pred hhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2057 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
++ .+++ .+.+.+|..+.++|+||.||++
T Consensus 239 -----~~-----------------------------~e~l------------------pe~~~~ae~~~~~G~vD~Vv~~ 266 (292)
T PRK05654 239 -----TV-----------------------------REKL------------------PEGFQRAEFLLEHGAIDMIVHR 266 (292)
T ss_pred -----hh-----------------------------hhhh------------------hhhhcCHHHHHhCCCCcEEECH
Confidence 00 0000 0124467888999999999999
Q ss_pred cchHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRR 2149 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r 2149 (2267)
+++|..|...|+.
T Consensus 267 ~e~r~~l~~~L~~ 279 (292)
T PRK05654 267 RELRDTLASLLAL 279 (292)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998885
|
|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=240.14 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=171.5
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.||+.. |...|+..++..|+..|++++|+++.++..+.||..++++++ +|||+|+|..
T Consensus 52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~---------------- 114 (299)
T PRK14571 52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVE---------------- 114 (299)
T ss_pred cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEE----------------
Confidence 4579999864 445578889999999999999999999999999999999998 5899999865
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+.+.. ..+.++||+||||..|+||+||.+|+|.+||.++++++... ..+++||+|++| +|++|.++
T Consensus 115 -------~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~vlVEeyI~G-~E~sv~vl 180 (299)
T PRK14571 115 -------IKEFM----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR--YGSVIVQEYIPG-REMTVSIL 180 (299)
T ss_pred -------Eechh----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh--CCcEEEEccccc-eEEEEEEE
Confidence 22211 24568999999999999999999999999999998876543 357999999986 89999999
Q ss_pred EcCCCC-EEEeccccccccccc----ceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 289 CDQYGN-VAALHSRDCSVQRRH----QKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 289 ~D~~G~-vi~l~~Rdcsvqrr~----qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
+++.+. ++.+.+. ....++ .|. ....|+. ++++..++|.+.+.++++++|+.|.++|||+++ +++
T Consensus 181 ~~~~~~~vl~~~e~--~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~--~~~ 255 (299)
T PRK14571 181 ETEKGFEVLPILEL--RPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFS--DGR 255 (299)
T ss_pred cCCCCeeeeceEEE--ecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE--CCc
Confidence 986433 2222111 011110 011 1124654 788999999999999999999999999999998 688
Q ss_pred EEEeeeCccCcCCc----ceehhhhcCCHHHHH
Q 000092 359 YYFLELNPRLQVEH----PVTEWIAEINLPAAQ 387 (2267)
Q Consensus 359 ~yfLEINpRlqgeh----pvtE~vtGvDL~~~q 387 (2267)
+||+|+||+++... |..-...|++..++.
T Consensus 256 ~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li 288 (299)
T PRK14571 256 FYFLEINTVPGLTELSDLPASAKAGGIEFEELV 288 (299)
T ss_pred EEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHH
Confidence 99999999998642 212234577777643
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=269.57 Aligned_cols=240 Identities=19% Similarity=0.248 Sum_probs=186.3
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.|+|.. |...|+..++..|+..||+++|+++.++..+.||..+|++++++|||||||.. +..
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~-------------~~~ 591 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQP-------------LTL 591 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------------Eec
Confidence 4689999976 66789999999999999999999999999999999999999999999999875 000
Q ss_pred ccccccccCCHH-HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 209 DVYRQACVYTTE-EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 209 ~~~~~~~V~s~e-ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
.-+ ..+.+ .+.+..+++|||+||||..+|+|+||.+|++.+||.++++.+... ..+++||+|+.+++|++|.+
T Consensus 592 ~~~----~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~i~~grEi~v~v 665 (809)
T PRK14573 592 AGW----KREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY--DTDVFVEESRLGSREIEVSC 665 (809)
T ss_pred hhc----ccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeccCCCEEEEEEE
Confidence 000 01222 234567789999999999999999999999999999999988743 46899999998889999999
Q ss_pred EEcCCCCEEEe--cccccc-----cccccc----eEEE-ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 288 LCDQYGNVAAL--HSRDCS-----VQRRHQ----KIIE-EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 288 l~D~~G~vi~l--~~Rdcs-----vqrr~q----Kiie-eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
++++.+..+.. .++.+. .+..+. ...+ ..|+. +++++.+++++.|.++.+++|++|.++|||++++
T Consensus 666 l~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~- 743 (809)
T PRK14573 666 LGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE- 743 (809)
T ss_pred EeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-
Confidence 99876643221 222221 111110 0011 23554 8999999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++-.. |..-...|+++.++.-++
T Consensus 744 ~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 744 EGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 68899999999998642 433345687777665543
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=253.49 Aligned_cols=321 Identities=17% Similarity=0.273 Sum_probs=267.2
Q ss_pred ccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 48 IHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
.+-++|+|.|. -|+.++|++|++|+.|+..+.+-++| +.-..+||+.|.-.
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETV-----------STDyDecdrLYFee------- 979 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETV-----------STDYDECDRLYFEE------- 979 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccc-----------cCchHHHhhHhHhh-------
Confidence 45689999986 69999999999999998444444443 22345788866532
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCC-cCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWG-HASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G-~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.++++-+.++..+|+...| .+..| ++-.|.+.|...+|.+|+.+..+.|+..+.+++.+.||..|+|..
T Consensus 980 -is~E~vmDiYe~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wke--- 1053 (1435)
T KOG0370|consen 980 -ISYERVMDIYELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKE--- 1053 (1435)
T ss_pred -hhhhhhhhhhhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhh---
Confidence 45689999999999988876665 55555 667788999999999999999999999999999999999999987
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+++.+|+.++|+++||||+|.|+.=-.|--|-++.+.+||+..++++..-++..|+.|-+
T Consensus 1054 --------------------lt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisK 1113 (1435)
T KOG0370|consen 1054 --------------------LTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISK 1113 (1435)
T ss_pred --------------------hccHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHH
Confidence 789999999999999999999999999999999999999999999999888999999999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccccce--------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK--------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qK--------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~t 347 (2267)
||++++|++|+.++.. |+++... ...|-. ---..|+..++++..+++.+++.++++++...|+.+
T Consensus 1114 fie~AkEidvDAVa~~-G~~~~ha------iSEHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN 1186 (1435)
T KOG0370|consen 1114 FIEGAKEIDVDAVASD-GKVLVHA------ISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFN 1186 (1435)
T ss_pred hhcccceechhhhccC-CeEEEEe------hhhhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCce
Confidence 9999999999988753 6665431 112200 001247888999999999999999999999999999
Q ss_pred EEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch--------------hhhhcccccCCCc
Q 000092 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP--------------EIRRFYGMEHGGV 413 (2267)
Q Consensus 348 VEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip--------------dir~~yg~~~~~~ 413 (2267)
++|+.. ++++.+||+|-|.+.+.|+...+.|+|+++...+..||.|++..+ .+.+|.|.||. |
T Consensus 1187 ~Q~i~k--~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~i~g~~~~~~~~~~~dyV~vKvPqFSf~RLagADp~-L 1263 (1435)
T KOG0370|consen 1187 MQIIAK--DNELKVIECNVRASRSFPFVSKTLGVDFIALATRAIMGVPVPPDLLLHPDYVAVKVPQFSFSRLAGADPV-L 1263 (1435)
T ss_pred EEEEec--CCeEEEEEeeeeeeccccceehhcCchHHHHHHHHHhCCCCCCccccCCCeEEEEccccccccccCCCce-e
Confidence 999998 789999999999999999999999999999999999998876432 24555566665 4
Q ss_pred ccccccccc
Q 000092 414 YDAWRKTSV 422 (2267)
Q Consensus 414 ~~~~~~~~~ 422 (2267)
+.+|.+||+
T Consensus 1264 gvEMaSTGE 1272 (1435)
T KOG0370|consen 1264 GVEMASTGE 1272 (1435)
T ss_pred eeEeccccc
Confidence 566665553
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=240.89 Aligned_cols=199 Identities=21% Similarity=0.234 Sum_probs=158.0
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceeccc---------------------------cccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------------------GWARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------------------~~a~~vVtG~ 1901 (2267)
.++|. .+-.+|++|+. |||+|||.|+.. +.+++||||+
T Consensus 46 ~vc~~c~~h~rl~areRi~~-----------L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~ 114 (285)
T TIGR00515 46 EVCPKCDHHMRMDARERIES-----------LLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGK 114 (285)
T ss_pred CCCCCCCCcCcCCHHHHHHH-----------ceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEE
Confidence 45665 56788999987 899999999842 1247999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||+|+|+|++++ ||+++..+++|++|+++.|.++++|||+|+|++|+. ..
T Consensus 115 g~I~G~~V~v~a~D~~f~---------------------gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaR---mq 170 (285)
T TIGR00515 115 GTLYGMPIVVAVFDFAFM---------------------GGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGAR---MQ 170 (285)
T ss_pred EEECCEEEEEEEEecccc---------------------CCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcc---cc
Confidence 999999999999998877 899999999999999999999999999999999962 23
Q ss_pred hhhchHHHHHHH---HHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhh
Q 000092 1982 LFEGILQAGSTI---VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKE 2058 (2267)
Q Consensus 1982 e~~gilk~ga~i---v~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~ 2058 (2267)
|....+..++++ +..+++.++|+|++++ |.++||+...++ ..+|+ ++|||+|.+|++||+-+ +
T Consensus 171 Eg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~--gpt~GG~aas~a--~~~D~--iia~p~A~ig~aGprVi-e------- 236 (285)
T TIGR00515 171 EALLSLMQMAKTSAALAKMSERGLPYISVLT--DPTTGGVSASFA--MLGDL--NIAEPKALIGFAGPRVI-E------- 236 (285)
T ss_pred cchhHHHhHHHHHHHHHHHHcCCCCEEEEEe--CCcchHHHHHHH--hCCCE--EEEECCeEEEcCCHHHH-H-------
Confidence 333345556664 4457778899999999 788888755443 35688 99999999999999521 0
Q ss_pred hHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccc
Q 000092 2059 LLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2138 (2267)
Q Consensus 2059 ~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~ 2138 (2267)
.++ . +.+| +.+++|..+.++|.||.||++++
T Consensus 237 --~ti-----------------------------~--------e~lp----------e~~q~ae~~~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 237 --QTV-----------------------------R--------EKLP----------EGFQTSEFLLEHGAIDMIVHRPE 267 (285)
T ss_pred --HHh-----------------------------c--------Cccc----------hhcCCHHHHHhCCCCcEEECcHH
Confidence 000 0 0011 33568889999999999999999
Q ss_pred hHHHHHHHHHH
Q 000092 2139 SRSFFCRRLRR 2149 (2267)
Q Consensus 2139 ~R~~~~~~L~r 2149 (2267)
+|+.|...|+.
T Consensus 268 ~r~~l~~~L~~ 278 (285)
T TIGR00515 268 MKKTLASLLAK 278 (285)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=238.74 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=140.0
Q ss_pred cccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1951 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K 1951 (2267)
++..+||+ |+|+..+.+ +++|+|+||++|+||.||+.+.+ .++.++....+ |+..|++++|
T Consensus 74 yi~~i~~d--f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG------------~dtk~~~~rNF-Gm~~PeGyRK 138 (317)
T COG0825 74 YIELLFTD--FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKG------------RDTKEKLKRNF-GMPRPEGYRK 138 (317)
T ss_pred HHHHHHhH--HHHhcCccccCcChhheeeeeeECCeeEEEEeeecC------------ccchhHHHhcC-CCCCchHHHH
Confidence 33346764 999977643 79999999999999999999866 44555555565 8999999999
Q ss_pred HHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccc
Q 000092 1952 TAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHI 2031 (2267)
Q Consensus 1952 ~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~ 2031 (2267)
+.|.+++|++|++|||+|+||+|..+|..+|..|+..++|+.+..|+..+||+|++|+ |+..+|...+++. .|.
T Consensus 139 AlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVI--GEGgSGGALAi~v---ad~- 212 (317)
T COG0825 139 ALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVI--GEGGSGGALAIGV---ADR- 212 (317)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEe--cCCCchhhHHhhH---HHH-
Confidence 9999999999999999999999999999999999999999999999999999999999 8766666566665 465
Q ss_pred eeecccccEEEeeCccchhhhhcchh
Q 000092 2032 EMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 2032 ~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
++|.++|.++|++|||++.|+||+.
T Consensus 213 -V~mle~s~ySVisPEG~AsILWkD~ 237 (317)
T COG0825 213 -VLMLENSTYSVISPEGCASILWKDA 237 (317)
T ss_pred -HHHHHhceeeecChhhhhhhhhcCh
Confidence 8999999999999999999999986
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=220.73 Aligned_cols=348 Identities=20% Similarity=0.206 Sum_probs=235.7
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC---CccCHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN---NYANVQLIV 124 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~---~Y~dvd~Il 124 (2267)
+-|||++| ..-..+..+|.++||+|+ .|..+.+.|.. -.|+.++..-.+..-. + .|..+|+
T Consensus 11 ~~kiLviG--vntR~vveSA~klGf~V~-------sv~~y~~~Dl~------~~a~~~l~~r~~~~~~rfe~-~de~~li 74 (389)
T COG2232 11 SCKILVIG--VNTRPVVESASKLGFEVY-------SVQYYDPADLP------GDAISYLRERPGELLGRFEN-LDEQKLI 74 (389)
T ss_pred cceEEEEe--ecchHhHHHHHhcCeEEE-------EeEeecccccc------cccceEEEecChhhcCcccC-CCHHHHH
Confidence 45799984 556778999999999997 34446666654 3455555443322222 4 4788999
Q ss_pred HHHHHcC--CCE-EEeCCCcCCCCCchHHHHHHcCCeEeCCCHH-HHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCC
Q 000092 125 EMAEMTR--VDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPAT-SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPE 200 (2267)
Q Consensus 125 ~iA~~~~--vDa-V~pG~G~~sEn~~la~~l~~~GI~fiGPs~e-am~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~ 200 (2267)
+++.... +|+ ++|+.|+...+..- +.+....|.+++ ....+.+|..+.+.+..+|+|.|+...
T Consensus 75 ~~~~~~~~dvD~~ii~~sg~e~l~~~g-----~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~-------- 141 (389)
T COG2232 75 EAAEDLAEDVDAPIIPFSGFEALRTSG-----ELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKK-------- 141 (389)
T ss_pred HHHHhhhhhcceeeeeccccccccccC-----ccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhh--------
Confidence 9998764 788 88888877665222 234456778887 889999999999999999999998432
Q ss_pred CcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000092 201 SCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 201 ~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
.+ ....--+|+|+||+.|+||. +.++.=.++.. -.++++|+|++|
T Consensus 142 ------------------~e----~~~~gekt~IlKPv~GaGG~-~el~~~~Ee~~-----------~~~~i~Qefi~G- 186 (389)
T COG2232 142 ------------------IE----PLEEGEKTLILKPVSGAGGL-VELVKFDEEDP-----------PPGFIFQEFIEG- 186 (389)
T ss_pred ------------------hh----hhhhcceeeEEeeccCCCce-eeecccccccC-----------CcceehhhhcCC-
Confidence 11 11122368999999999996 33333222221 258999999987
Q ss_pred ceeeEEEEEcCCCCEEEecccccccc--cc--cceE--EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 281 RHLEVQLLCDQYGNVAALHSRDCSVQ--RR--HQKI--IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 281 rhieVqvl~D~~G~vi~l~~Rdcsvq--rr--~qKi--ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
++++|.+++++. .++.+..-+-.+. +- .|-. -...|.+. +..+++++.|..+...+|+.|...|||+++
T Consensus 187 ~p~Svs~is~g~-~a~~la~N~QiI~~~~~~~~~f~Y~GNlTP~~~---~~~ee~e~la~elV~~lgL~GsnGVDfvl~- 261 (389)
T COG2232 187 RPVSVSFISNGS-DALTLAVNDQIIDGLRGEYSQFVYKGNLTPFPY---EEVEEAERLAEELVEELGLVGSNGVDFVLN- 261 (389)
T ss_pred ceeEEEEEecCc-ceEEEEEeeeeecccccccccceeccCcCCCcc---hhhHHHHHHHHHHHHHhccccccccceEee-
Confidence 899999999975 3433321111110 00 0000 01124332 333899999999999999999999999998
Q ss_pred cCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCC
Q 000092 355 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAES 434 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~ 434 (2267)
+.++|+||+|||+||...+.|+++|+|+.+++++..+|.-. ++
T Consensus 262 -d~gpyViEVNPR~qGt~e~iE~s~giNl~~lHi~af~G~Lp------------------------------------Er 304 (389)
T COG2232 262 -DKGPYVIEVNPRIQGTLECIERSSGINLFRLHIQAFDGELP------------------------------------ER 304 (389)
T ss_pred -cCCcEEEEecCcccchHHHHHHhcCCCHHHHHHHHhcCcCc------------------------------------CC
Confidence 78899999999999999999999999999999999998533 23
Q ss_pred CCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhh
Q 000092 435 TRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGL 514 (2267)
Q Consensus 435 ~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL 514 (2267)
+.|+++++...++|.+ +-+.| .....|.+---.+|..+.+ -+ .+..|||.+.++++|..-+.+.+
T Consensus 305 ~kpr~~a~krILyap~--~v~v~-----------~l~~~~~~DiP~~Gtviek-ge-Pl~sviA~~nt~~~a~~~~er~~ 369 (389)
T COG2232 305 PKPRGYACKRILYAPR--TVRVP-----------ILKLSWTHDIPRPGTVIEK-GE-PLCSVIASSNTRSGAESMAERLA 369 (389)
T ss_pred CCcceeEEeEEEeccc--eeecc-----------cccccccccCCCCCcccCC-CC-ceeeeeeccCCHHHHHHHHHHHH
Confidence 5567888887777732 22222 1112222211122222222 22 27889999999999998776655
Q ss_pred cc
Q 000092 515 KE 516 (2267)
Q Consensus 515 ~e 516 (2267)
+.
T Consensus 370 er 371 (389)
T COG2232 370 ER 371 (389)
T ss_pred HH
Confidence 53
|
|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=214.59 Aligned_cols=178 Identities=23% Similarity=0.351 Sum_probs=131.7
Q ss_pred HhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEE
Q 000092 169 ALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK 248 (2267)
Q Consensus 169 ~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~ 248 (2267)
.+.||..++.+++++|||+|++.. +.+.+++..+++.++||+|+||..|+||+||++
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~-----------------------~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~ 57 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRI-----------------------VDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFI 57 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEE-----------------------ECSHHHHHHHHHHSSSSEEEEESS-STTTT-EE
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEcCccccCCCEEE
Confidence 478999999999999999999766 789999999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccccc--ceEEEecCCCCCCHH
Q 000092 249 VHNDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH--QKIIEEGPITVAPLE 324 (2267)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~--qKiieeaPa~~l~~e 324 (2267)
+++.+++.++++.+..... +.++++|+|++| .++++.++.+ +|.++.+...+...+... ..-...+.....+..
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (184)
T PF13535_consen 58 VHSPEELEAALAEIREDSPLGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPSEPP 135 (184)
T ss_dssp ESSHHHHHHHHHHHHHHHS-HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES--CE
T ss_pred eCCHHHHHHHHHHHHHhcccCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecccccc
Confidence 9999999999999877654 678999999986 8999998888 688766544333222110 000111111112334
Q ss_pred HHHHHHHHHHHHHHHcCc-eeeeEEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 325 TVKKLEQAARRLAKCVNY-VGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 325 ~~~eL~~~A~rla~aLGy-~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
..+++++.+.++++++|| .|++++||++++ +|.+||||+|||++|.+
T Consensus 136 ~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 136 LPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEEEESS--STT
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEEECccCCCCC
Confidence 458999999999999999 799999999995 47899999999999875
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-22 Score=246.88 Aligned_cols=305 Identities=21% Similarity=0.324 Sum_probs=260.5
Q ss_pred ccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 48 IHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 48 ~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
-+|+||+|.|. .+...|+++|+-|+.|+-.+.+|-+| .| .-.+||+.+.+|-
T Consensus 377 ~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtv--Qt---------s~~lAD~vyflpv------ 439 (1435)
T KOG0370|consen 377 VKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATV--QT---------SKGLADKVYFLPV------ 439 (1435)
T ss_pred ccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCccccc--cc---------ccccceEEEEeec------
Confidence 47999999864 46788999999999988655555444 33 1238999999984
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCCCcCC-CCC--chHH--HHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCC
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGWGHAS-EIP--ELPD--TLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWS 191 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~G~~s-En~--~la~--~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~ 191 (2267)
+.+-+....+...+|++..++|... -|- ++-+ .+++.|....|.+.+++....|+..+...+++.+.++.|..
T Consensus 440 --T~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~ 517 (1435)
T KOG0370|consen 440 --TPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSE 517 (1435)
T ss_pred --CHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchh
Confidence 3566788889999999999988543 221 1223 45567888999999999999999999999999999999966
Q ss_pred CCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcE
Q 000092 192 GSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 192 ~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I 271 (2267)
. +++.+++.++++++|||||+.+...-||-|--.++|.+||.+...++.+. ...+
T Consensus 518 a-----------------------~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~--s~Qi 572 (1435)
T KOG0370|consen 518 A-----------------------VSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL--SPQI 572 (1435)
T ss_pred h-----------------------HhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc--Ccee
Confidence 5 78999999999999999999999999999999999999999988877654 4589
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeccccccccccc------ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceee
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH------QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGA 345 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~------qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga 345 (2267)
+||+-+.|..|+|.++++|.++|++.+ |....-. -.-+-.+|+..++.+....++..|+++.+++|..|-
T Consensus 573 lvekSlkGwkevEyevvrDa~~nciTv----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGE 648 (1435)
T KOG0370|consen 573 LVEKSLKGWKEVEYEVVRDAYDNCITV----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGE 648 (1435)
T ss_pred eehhhhccccceEEEEEeccccchhhh----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCccc
Confidence 999999999999999999999999987 5443222 223446899999999999999999999999999999
Q ss_pred eEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCch
Q 000092 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400 (2267)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ip 400 (2267)
++|+|.++|.+-++++||+|+|++.+..+...+||..|......+++|+||+.+|
T Consensus 649 cniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aAKlalg~~lpe~~ 703 (1435)
T KOG0370|consen 649 CNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAAKLALGIPLPELK 703 (1435)
T ss_pred ccceeeecccceeEEEEEEEeEEeehhhhhccCccCcHHHHHHHHhcCcccccCC
Confidence 9999999998899999999999999999999999999999999999999998765
|
|
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=220.37 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=167.5
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
..|+|++...+......+++.++..|+++++ +++++..+.||..++++++++|+|+|++..
T Consensus 48 ~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~------------------ 108 (277)
T TIGR00768 48 ELDVVIVRIVSMFRGLAVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTGL------------------ 108 (277)
T ss_pred CCCEEEEechhHhhHHHHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEEE------------------
Confidence 4688776642222334567888889999875 589999999999999999999999999765
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC-CCCcEEEEEeccccceeeEEEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV-PGSPIFIMKVASQSRHLEVQLLC 289 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~-~~~~I~VEeyI~g~rhieVqvl~ 289 (2267)
+.+.+++.++.++++||+|+||..|+||+|+.++++.+++..+++...... ...++++|+|+++....++.++.
T Consensus 109 -----~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 109 -----AGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred -----eCCHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEE
Confidence 668888888899999999999999999999999999999998887665432 12579999999875324455444
Q ss_pred cCCCCEEEecccc--cccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 290 DQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 290 D~~G~vi~l~~Rd--csvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
.+ |.+++...|. ..............|.. + .+++.+.|.++++++|+ |.+.|||++++ +|++||+|+|||
T Consensus 184 ~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~~-l----~~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~ 255 (277)
T TIGR00768 184 VG-DEVIAAIYRITSGHWRTNLARGGKAEPCP-L----TEEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPN 255 (277)
T ss_pred EC-CEEEEEEEEcCCCchhhhhhcCCeeeecC-C----CHHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCC
Confidence 33 4555544332 00000000000011222 2 24788999999999998 78899999984 678999999999
Q ss_pred CcCCcceehhhhcCCHHHHHHHH
Q 000092 368 LQVEHPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 368 lqgehpvtE~vtGvDL~~~qL~i 390 (2267)
++.. ..+..+|+|++++.++.
T Consensus 256 p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 256 PEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred cchh--hhHHHHCCCHHHHHHhh
Confidence 8743 45678999999998764
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-19 Score=214.63 Aligned_cols=351 Identities=19% Similarity=0.206 Sum_probs=249.0
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCc---hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPE---LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSH 194 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~---la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~ 194 (2267)
.|.+++.++|+++++..|++|- |.|. +...+.+.||..+||+.+++.+-++|..+|.++.++||||..|..
T Consensus 55 ~d~~ala~f~~e~~I~lVvvGP----E~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~-- 128 (788)
T KOG0237|consen 55 ADFEALASFCKEHNINLVVVGP----ELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKT-- 128 (788)
T ss_pred hhHHHHHHHHHHcceeEEEECC----chhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeee--
Confidence 5789999999999999999992 2222 236677889999999999999999999999999999999999876
Q ss_pred ccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCC
Q 000092 195 VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGS 269 (2267)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~ 269 (2267)
+++++++..+.+..+ .++|||+..-..||||.+..+.+|.-++.+.+... ..|.
T Consensus 129 ---------------------ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 129 ---------------------FTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred ---------------------eCCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 788999999999999 56999999999999999999999998888876533 2367
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHHHHHHH-HH
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLEQAAR-RL 336 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL~~~A~-rl 336 (2267)
.++|||+++| .|+++-.|.|++ ++..+. ....|.++.+ .+|+|.++++..+.+.+... +.
T Consensus 188 tvViEE~LEG-eEvS~laftDG~-s~~~mp-----~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~T 260 (788)
T KOG0237|consen 188 TVVIEELLEG-EEVSFLAFTDGY-SVRPLP-----PAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPT 260 (788)
T ss_pred eEehhhhcCc-ceEEEEEEecCc-ccccCC-----cccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHh
Confidence 8999999988 799999999986 333332 2234554443 26888888887665544332 22
Q ss_pred H-----HHcCceeeeEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccC
Q 000092 337 A-----KCVNYVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEH 410 (2267)
Q Consensus 337 a-----~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~ 410 (2267)
. +.+.|.|+...-++++ .++|.+||.|.|++- |..+.-....-||.+..+...-|. |..
T Consensus 261 v~Gm~~eg~~y~GVLfaGlMl~--k~~P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~-L~~------------ 325 (788)
T KOG0237|consen 261 VDGMAEEGIPYVGVLFAGLMLT--KDGPKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGR-LDT------------ 325 (788)
T ss_pred hhHHHhcCCceeeEEeeeeEEe--cCCccEEEEecccCCchhhhhHHHHHhHHHHHHHHHhhCC-ccc------------
Confidence 2 2457789999999998 567999999999973 333333334459998888776663 331
Q ss_pred CCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCC----CCCCCCccccccccCCCcEEEEEeeeeCCccc
Q 000092 411 GGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDG----FKPTSGKVQELSFKSKPNVWAYFSVKSGGGIH 486 (2267)
Q Consensus 411 ~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~----F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~ 486 (2267)
..|.|+ .....+.++++--|++...++ +.|..-+....-|.++..+.-.-.+..|++
T Consensus 326 ------------~~i~w~-----~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~vvTNGGR-- 386 (788)
T KOG0237|consen 326 ------------VDIVWS-----KKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNVVTNGGR-- 386 (788)
T ss_pred ------------cCcccc-----ccceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEeccccccccceEecCce--
Confidence 223332 122335555555566554443 122222222222333322221222444554
Q ss_pred ccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchh
Q 000092 487 EFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGW 548 (2267)
Q Consensus 487 ~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ 548 (2267)
+--|.+.+++.++|++.++.+.+.++..| .|.++=+...+|..-..+|.-
T Consensus 387 ------VLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg------~~yRkDI~~ra~~~~~~st~s 436 (788)
T KOG0237|consen 387 ------VLSVTATGDDLESAAETAYKAVQVISFSG------KFYRKDIAWRAFKNKDDSTPS 436 (788)
T ss_pred ------EEEEEecCchHHHHHHHHHHHheEEeecc------ccccchhhhhhcchhhcCCcc
Confidence 44588999999999999999999999998 455555556666655555543
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-21 Score=252.96 Aligned_cols=312 Identities=20% Similarity=0.213 Sum_probs=223.6
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000092 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2267)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~ 87 (2267)
|.++||+.+|||+|.+ ..+..+.-+-+|....-|.. .+..|+.++.++-+-
T Consensus 87 q~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~----------------- 137 (727)
T PRK14016 87 QNLAGMPVGFGRTRET---SEPGVYQVVFEYKEEEVGRE---------ALELAVDLVNAAIND----------------- 137 (727)
T ss_pred HHHhCCCcceeEEEEc---CCCCEEEEEEEeCCHHHHHH---------HHHHHHHHHHHHhhC-----------------
Confidence 4689999999998663 22222211112211111111 245666666665532
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCE--------EEeCCCcCCCCCchHHHHHHcCCeE
Q 000092 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDA--------VWPGWGHASEIPELPDTLSTKGIIF 159 (2267)
Q Consensus 88 t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDa--------V~pG~G~~sEn~~la~~l~~~GI~f 159 (2267)
.+-|.+....+++.+++.+.+++. ...|+++|++.++++ +++|||+.++. +...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~lgps--------t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~------i~~~~~-- 201 (727)
T PRK14016 138 TPFDLEAALARLRELDEDERLGPS--------TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRR------IQAAET-- 201 (727)
T ss_pred CCcCHHHHHHHHHHHHHhcccCCC--------HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHH------HHHhcC--
Confidence 123778899999999999999753 358999999999988 99999998763 444443
Q ss_pred eCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 160 iGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
.+++..++..++||..++++++++|||+|++.. +.+.+++.++++++|||||+||..
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~-----------------------v~s~~~a~~~a~~iG~PvVVKP~~ 258 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRV-----------------------VTSAEDAWEAAEEIGYPVVVKPLD 258 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeE-----------------------eCCHHHHHHHHHHcCCCEEEEECC
Confidence 379999999999999999999999999999765 778999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccc---------------cceeeEEEEEcCCCCEEEeccccc
Q 000092 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQ---------------SRHLEVQLLCDQYGNVAALHSRDC 303 (2267)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g---------------~rhieVqvl~D~~G~vi~l~~Rdc 303 (2267)
|++|+||++ +++.+++.++++.+... +..++||+|++| .++++.++++|+++++..+..+..
T Consensus 259 G~~G~GV~~~v~~~~el~~a~~~a~~~--~~~viVEe~I~G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n 336 (727)
T PRK14016 259 GNHGRGVTVNITTREEIEAAYAVASKE--SSDVIVERYIPGKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVN 336 (727)
T ss_pred CCCCCceEEecCCHHHHHHHHHHHHHh--CCeEEEEEecCCceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhh
Confidence 999999998 99999999999988755 368999999998 555666666676666665555432
Q ss_pred cccccc----------------------------------ceEEE--------ecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 000092 304 SVQRRH----------------------------------QKIIE--------EGPITVAPLETVKKLEQAARRLAKCVN 341 (2267)
Q Consensus 304 svqrr~----------------------------------qKiie--------eaPa~~l~~e~~~eL~~~A~rla~aLG 341 (2267)
.-.||. +++.- .+-+...+.++.+++.+.|.++++.+|
T Consensus 337 ~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~g 416 (727)
T PRK14016 337 QDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIG 416 (727)
T ss_pred cCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcC
Confidence 222221 11110 011222345677889999999999999
Q ss_pred ceeeeEEEEEEEc-----cCCcEEEeeeCccCcCCcce-ehhhhcCCHHHHHHHH
Q 000092 342 YVGAATVEYLYSM-----ETGEYYFLELNPRLQVEHPV-TEWIAEINLPAAQVAV 390 (2267)
Q Consensus 342 y~Ga~tVEfl~d~-----~~g~~yfLEINpRlqgehpv-tE~vtGvDL~~~qL~i 390 (2267)
+ +.+.||++.+. +..++.++|+|..++..... .....+.|.....+..
T Consensus 417 l-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 417 L-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred C-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 8 67779998852 12467999999998865311 2223566666666654
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-21 Score=198.44 Aligned_cols=110 Identities=34% Similarity=0.598 Sum_probs=100.8
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+|||||+|||++|++++|++|++|++++ +|++ +.+..+.+.++||+.|.+|++++.++|+|++.|+++
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv---------~v~s--~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~i 69 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETV---------AVNS--NPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDI 69 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEE---------EEEE--GGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcce---------eccC--chhcccccccccccceecCcchhhhhhccHHHHhhH
Confidence 68999999999999999999999988874 5566 556899999999999999999999999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
|+++++|++||||||++|+++|++.|++.|+.|+||++++|
T Consensus 70 a~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 70 ARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred hhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 99999999999999999999999999999999999999986
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=217.55 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=168.0
Q ss_pred CCCEEEeCCCc----CCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 131 RVDAVWPGWGH----ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 131 ~vDaV~pG~G~----~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
++|+|++-.+. ..++ ....++..| .++++++.++..+.||..++.+++++|||+|+|..
T Consensus 57 ~~d~v~~~~~~~~~~~~~~--~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~-------------- 119 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTA--ALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGI-------------- 119 (300)
T ss_pred CCCEEEEcCCCchhhHHHH--HHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEE--------------
Confidence 67999985432 1122 356677788 56789999999999999999999999999999865
Q ss_pred CcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc--cccee
Q 000092 207 PDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS--QSRHL 283 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~--g~rhi 283 (2267)
+.+.+++.++++++ +||+||||..|+||+||.++++.+++..+++..... +.+++||+|++ .++++
T Consensus 120 ---------~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~--~~~~lvQe~I~~~~g~d~ 188 (300)
T PRK10446 120 ---------AHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL--NAHILVQEYIKEAQGCDI 188 (300)
T ss_pred ---------eCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc--CCCEEEEeeeccCCCceE
Confidence 45677777777777 799999999999999999999999999888776432 36899999995 34889
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
.|.+++ |+++....|...-..-..+... +... .+.++.+++++.|.++++++|+. .+.|||+++ ++++||+|
T Consensus 189 rv~vig---~~~~~~~~r~~~~~~~~~n~~~-g~~~-~~~~l~~~~~~~a~~a~~alg~~-~~gvD~~~~--~~g~~vlE 260 (300)
T PRK10446 189 RCLVVG---DEVVAAIERRAKEGDFRSNLHR-GGAA-SVASITPQEREIAIKAARTMALD-VAGVDILRA--NRGPLVME 260 (300)
T ss_pred EEEEEC---CEEEEEEEEecCCCchhheecc-CCee-ccCCCCHHHHHHHHHHHHHhCCC-EEEEEEEEc--CCCcEEEE
Confidence 988875 3566555543321100011111 1100 11123456889999999999997 888999998 34499999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcC
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
+|++++.. .++.++|+|+.+..++....
T Consensus 261 vN~~pg~~--~~~~~~g~~~~~~~~~~i~~ 288 (300)
T PRK10446 261 VNASPGLE--GIEKTTGIDIAGKMIRWIER 288 (300)
T ss_pred EECCCChh--hhHHHHCcCHHHHHHHHHHH
Confidence 99998653 45778999999999887654
|
|
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=212.43 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=163.2
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
++|++++-.........+...++..|+++++ ++++++.+.||..++.+++++|||+|+|..
T Consensus 47 ~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~------------------ 107 (280)
T TIGR02144 47 DVDVAIIRCVSQSRALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYL------------------ 107 (280)
T ss_pred CCCEEEEcCcchhhHHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEe------------------
Confidence 4577775411111112245667888999986 579999999999999999999999999865
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh--CCCCcEEEEEeccc-cceeeEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE--VPGSPIFIMKVASQ-SRHLEVQL 287 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e--~~~~~I~VEeyI~g-~rhieVqv 287 (2267)
+.+.+++..+.+++|||+|+||..|+||+|+.++++.+++.++++..... ....++++|+|+++ ++++++.+
T Consensus 108 -----~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~v 182 (280)
T TIGR02144 108 -----AFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFV 182 (280)
T ss_pred -----eCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEE
Confidence 56788888888889999999999999999999999999998877543221 12457999999986 47777777
Q ss_pred EEcCCCCEEEecccccccccccceE-EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 288 LCDQYGNVAALHSRDCSVQRRHQKI-IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rdcsvqrr~qKi-ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
+++ ...+...|...-.+.+... ....|.. ++ +++.+.|.++++++|+ |.++|||++++ +|++||+|+||
T Consensus 183 ig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~----~~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~ 252 (280)
T TIGR02144 183 IGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LD----EEVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNH 252 (280)
T ss_pred ECC---EEEEEEEEcCCchhhhhhcCCceeccC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeC
Confidence 643 3333222211100111000 0112222 23 4578899999999996 68899999983 66899999999
Q ss_pred cCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 367 RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 367 RlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
|++... ++..+|+|+.+..++.+.
T Consensus 253 ~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 253 VPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred Ccchhh--hhHhhCCCHHHHHHHHHH
Confidence 987643 456899999999998764
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=212.22 Aligned_cols=279 Identities=13% Similarity=0.162 Sum_probs=188.8
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 35 ~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
+.+.++.....+ -+|..+ ++..++.++++|++.|++++ ++....+. ..-...+++|+++.+...
T Consensus 7 ~~~~~~~y~~~~--~~i~~~-~shsaL~I~~gAkeeGf~ti---------~v~~~~~~-~~y~~~~~~De~i~v~~~--- 70 (358)
T PRK13278 7 ILEILKKYDLDN--ITIATI-GSHSSLQILKGAKKEGFRTI---------AICKKKRE-VFYKRFPVADEFIIVDDF--- 70 (358)
T ss_pred HHHHHHhcCccc--ceEEEE-ecccHHHHHHHHHHCCCeEE---------EEEeCCCc-cccccccccceEEEEcch---
Confidence 445555443221 134444 46789999999999999885 44443332 334667789999988421
Q ss_pred CCccCHHHHHHHHHHcCCCE-EEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDA-VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDa-V~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~ 193 (2267)
.+-.|.+...++++. ++ ++|. |....... .+.+.+.++++. |+.++++...||..++++++++|||+|++..
T Consensus 71 ~di~~~~~~~~l~~~---~~iiIp~-gs~v~y~~-~d~l~~~~~p~~-gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~~- 143 (358)
T PRK13278 71 SDILNEAVQEKLREM---NAILIPH-GSFVAYLG-LENVEKFKVPMF-GNREILRWEADRDKERKLLEEAGIRIPRKYE- 143 (358)
T ss_pred hhhcCHHHHHHHhhc---CcEEEeC-CCcceeec-HHHHHHCCCCcC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCEeC-
Confidence 111334444444444 44 4444 44444333 344446777765 4888999999999999999999999999632
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCc
Q 000092 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSP 270 (2267)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~ 270 (2267)
+.+ .++||+|+||..|.||+|+++|+|.+|+.++++.+.+. .....
T Consensus 144 ------------------------~~~-------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~ 192 (358)
T PRK13278 144 ------------------------SPE-------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEE 192 (358)
T ss_pred ------------------------CHH-------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCe
Confidence 333 25799999999999999999999999999999987531 12568
Q ss_pred EEEEEeccccceeeEEEEEcC-CCCE--EEecccccc---cccc-----------cceE--EEecCCCCCCHHHHHHHHH
Q 000092 271 IFIMKVASQSRHLEVQLLCDQ-YGNV--AALHSRDCS---VQRR-----------HQKI--IEEGPITVAPLETVKKLEQ 331 (2267)
Q Consensus 271 I~VEeyI~g~rhieVqvl~D~-~G~v--i~l~~Rdcs---vqrr-----------~qKi--ieeaPa~~l~~e~~~eL~~ 331 (2267)
++||||+.| .++++++|... +|.+ +.+-.|-.+ ...| +... ...-|+. +.+.+.+++.+
T Consensus 193 ~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~-~resll~~v~~ 270 (358)
T PRK13278 193 AIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV-LRESLLPQVFE 270 (358)
T ss_pred EEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc-chHhHHHHHHH
Confidence 999999987 69999998742 2443 332222111 0011 0001 1123443 56677788888
Q ss_pred HHHHHHHH----c--CceeeeEEEEEEEccCCcEEEeeeCccCcC
Q 000092 332 AARRLAKC----V--NYVGAATVEYLYSMETGEYYFLELNPRLQV 370 (2267)
Q Consensus 332 ~A~rla~a----L--Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqg 370 (2267)
.+.+++++ + |..|+.++|+++++ ++++|++|+|||++|
T Consensus 271 ~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~g 314 (358)
T PRK13278 271 YGERFVETSKELVPPGMIGPFCLESVVTD-NLEIVVFEISARIVA 314 (358)
T ss_pred HHHHHHHHHHHhcCccccCCceEEEEEcC-CCCEEEEEEeCcccC
Confidence 88888887 4 66799999999984 788999999999955
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-19 Score=207.68 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=156.6
Q ss_pred CccCCC----CCCChHHHhcccccCCCCcccccccCCCceeccc--------cc--------------------cceEEE
Q 000092 1852 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--------GW--------------------ARTVVT 1899 (2267)
Q Consensus 1852 ~~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~--------~~--------------------a~~vVt 1899 (2267)
..++|. ..-.+|++|+. |+|+|||.|+.. .| +++|||
T Consensus 57 ~~vcp~c~~h~rltAreRI~~-----------L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVt 125 (296)
T CHL00174 57 MNICEQCGYHLKMSSSDRIEL-----------LIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQT 125 (296)
T ss_pred CCCCCCCCCCcCCCHHHHHHH-----------HccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEE
Confidence 345665 66788999997 899999999843 22 379999
Q ss_pred EEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCch
Q 000092 1900 GRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQ 1979 (2267)
Q Consensus 1900 G~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~ 1979 (2267)
|+|+|+|+||.|+++|++++ ||+++...++|++|+++.|.+.++|||+|.+++|
T Consensus 126 G~G~I~Gr~v~v~a~Dftf~---------------------gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGG----- 179 (296)
T CHL00174 126 GIGQLNGIPVALGVMDFQFM---------------------GGSMGSVVGEKITRLIEYATNESLPLIIVCASGG----- 179 (296)
T ss_pred EEEEECCEEEEEEEECCccc---------------------ccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCC-----
Confidence 99999999999999999887 9999999999999999999999999999999999
Q ss_pred hhhhhchHH--HHHHHHHHH----hcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhh
Q 000092 1980 RDLFEGILQ--AGSTIVENL----RTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIK 2053 (2267)
Q Consensus 1980 ~~e~~gilk--~ga~iv~al----~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~ 2053 (2267)
..|++|+.. ..+++..++ ....+|+|++++ |.+.||.+..++. ..|+ ++|.|+|.+|+.||.-+-.
T Consensus 180 ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~--gPt~GG~aas~a~--l~Di--iiae~~A~IgfAGPrVIe~-- 251 (296)
T CHL00174 180 ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILT--SPTTGGVTASFGM--LGDI--IIAEPNAYIAFAGKRVIEQ-- 251 (296)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEc--CCCchHHHHHHHH--cccE--EEEeCCeEEEeeCHHHHHH--
Confidence 577777744 335553332 257799999999 7778877665543 3587 8899999999999943310
Q ss_pred cchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccc
Q 000092 2054 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2133 (2267)
Q Consensus 2054 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~i 2133 (2267)
++ .+-+| +.+++|..+.++|+||.|
T Consensus 252 --------t~-------------------------------------ge~lp----------e~fq~ae~l~~~G~vD~i 276 (296)
T CHL00174 252 --------TL-------------------------------------NKTVP----------EGSQAAEYLFDKGLFDLI 276 (296)
T ss_pred --------hc-------------------------------------CCcCC----------cccccHHHHHhCcCceEE
Confidence 00 00111 346689999999999999
Q ss_pred cCccchHHHHHHHHH
Q 000092 2134 VDWDKSRSFFCRRLR 2148 (2267)
Q Consensus 2134 i~~~~~R~~~~~~L~ 2148 (2267)
|++++.|..|.+.|+
T Consensus 277 V~r~~lr~~l~~ll~ 291 (296)
T CHL00174 277 VPRNLLKGVLSELFQ 291 (296)
T ss_pred EcHHHHHHHHHHHHH
Confidence 999999999988775
|
|
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=227.61 Aligned_cols=283 Identities=16% Similarity=0.167 Sum_probs=200.5
Q ss_pred hhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC
Q 000092 33 SEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT 112 (2267)
Q Consensus 33 ~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~ 112 (2267)
..+.++++..|..++. +-+......|.++. +++|++.+ ..++ ..+.++. |+.+++++.+
T Consensus 178 ~~l~e~a~~~G~~~i~--L~V~~~N~~Ai~fY---~klGf~~~---------~~y~--~~d~~~~-----~~~~~~g~~~ 236 (547)
T TIGR03103 178 RALAEHFQSRGCAYMD--LSVMHDNEQAIALY---EKLGFRRI---------PVFA--LKRKNAI-----NERLFSGPAP 236 (547)
T ss_pred HHHHHHHHHCCCCEEE--EEEcCCCHHHHHHH---HHCCCEEe---------eEEE--EeccCCc-----CcccccCCCc
Confidence 4455666666543321 11222335555444 56787764 3344 3344554 8999887655
Q ss_pred CCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchH-------HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHc
Q 000092 113 NNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELP-------DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2267)
Q Consensus 113 ~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~la-------~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~a 183 (2267)
..+ +|. +.|++.|++.++++++.. +|+..+. ..|... +. .-+++.+|..++||..++++++++
T Consensus 237 ~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~a 308 (547)
T TIGR03103 237 EAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLGGRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEA 308 (547)
T ss_pred ccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCCceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHc
Confidence 433 566 999999999999999944 4544442 111111 11 126889999999999999999999
Q ss_pred CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEE-ECCHHHHHHHHHHH
Q 000092 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK-VHNDDEVRALFKQV 262 (2267)
Q Consensus 184 GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~-V~s~eEL~~a~~~~ 262 (2267)
|||+|+|.. +.+.+++.++++++| |+||||..|++|+||++ +++.++|.++++.+
T Consensus 309 GIpVP~~~~-----------------------~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a 364 (547)
T TIGR03103 309 GLQVPEQQL-----------------------AGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKA 364 (547)
T ss_pred CcCCCCEEE-----------------------ECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHH
Confidence 999999876 567888889999999 69999999999999997 99999999999988
Q ss_pred HhhCCCCcEEEEEecccc--cee-------------eEEEEEcCCCCEEEecccccccccc-------------------
Q 000092 263 QGEVPGSPIFIMKVASQS--RHL-------------EVQLLCDQYGNVAALHSRDCSVQRR------------------- 308 (2267)
Q Consensus 263 ~~e~~~~~I~VEeyI~g~--rhi-------------eVqvl~D~~G~vi~l~~Rdcsvqrr------------------- 308 (2267)
.... ..++||+|++|. |++ .+++++|+++++..|.++...-.++
T Consensus 365 ~~~~--~~vlvEe~i~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~ 442 (547)
T TIGR03103 365 RQFC--DRVLLERYVPGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLA 442 (547)
T ss_pred HhcC--CcEEEEEeccCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHH
Confidence 7653 589999999885 444 6788899888888777664311100
Q ss_pred ------------cceEE--------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc-cCCcEEEeeeCcc
Q 000092 309 ------------HQKII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-ETGEYYFLELNPR 367 (2267)
Q Consensus 309 ------------~qKii--------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~-~~g~~yfLEINpR 367 (2267)
.+++. ..+.+..++.++.+++.+.|+++++++|+. .+.||++.+. ...++.|||+|.|
T Consensus 443 ~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~ 521 (547)
T TIGR03103 443 EAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANER 521 (547)
T ss_pred HcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCC
Confidence 01110 012233345667889999999999999985 6679999862 2235799999999
Q ss_pred CcCC
Q 000092 368 LQVE 371 (2267)
Q Consensus 368 lqge 371 (2267)
++-.
T Consensus 522 Pgl~ 525 (547)
T TIGR03103 522 PGLA 525 (547)
T ss_pred cccc
Confidence 9855
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=202.97 Aligned_cols=308 Identities=11% Similarity=0.125 Sum_probs=212.8
Q ss_pred HHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhh---hccEEEEccCC
Q 000092 35 VDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIR---IADQFVEVPGG 111 (2267)
Q Consensus 35 ~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr---~ADe~v~vp~~ 111 (2267)
+.+-+....... -+|..+ +...|+.+++-||+.|++|+ +++... +.-.|.+ .+|+++.+.
T Consensus 6 ~~~~~~~y~~~~--~~i~t~-~SHsal~i~~gAk~egf~t~---------~v~~~~---r~~~Y~~f~~~~d~~i~~~-- 68 (366)
T PRK13277 6 IKEILEGYDLDK--VKIGVL-ASHSALDVFDGAKDEGFRTI---------AVCQKG---RERTYREFKGIVDEVIVLD-- 68 (366)
T ss_pred HHHHHhhcCccc--cEEEEE-ecchHHHHhccHHhcCCcEE---------EEEcCC---CcchhhhhccccceEEEec--
Confidence 344444443322 145555 46899999999999999885 344332 3344444 589999984
Q ss_pred CCCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHH-HcCCeEeCCCHHH-HHHhcCHHHHHHHHHHcCCCC
Q 000092 112 TNNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLS-TKGIIFLGPPATS-MAALGDKIGSSLIAQAANVPT 187 (2267)
Q Consensus 112 ~~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~-~~GI~fiGPs~ea-m~~lgDK~~~k~laq~aGVPt 187 (2267)
+|.++ +.+.+-.++. ++|+.-.|...+..-. +.++ +..+++.|+..-. .+.=+||..+..+++++|||+
T Consensus 69 ----~f~~~~~~~~~~~l~~~--n~i~iPh~sf~~y~g~-~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~ 141 (366)
T PRK13277 69 ----KFKDILSEKVQDELREE--NAIFVPNRSFAVYVGY-DAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPY 141 (366)
T ss_pred ----chhhhhhHHHHHHHHHC--CeEEecCCCeEEEecH-HHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCC
Confidence 45432 3455555554 5555444544443222 4455 4778888875432 233488999888999999999
Q ss_pred CCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhh
Q 000092 188 LPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGE 265 (2267)
Q Consensus 188 pp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e 265 (2267)
|+... ++ +++.|||||||..|.| |+|+++++|.+|+..........
T Consensus 142 Pk~~~-------------------------~p-------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~ 189 (366)
T PRK13277 142 PKLFK-------------------------DP-------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKA 189 (366)
T ss_pred ceeec-------------------------Cc-------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhc
Confidence 98543 22 4678999999999999 99999999999998887665421
Q ss_pred C-----CCCcEEEEEeccccceeeEEEEEcC-CCCEEE--ecccccc-c---cc---ccc---------eEEEecCCCCC
Q 000092 266 V-----PGSPIFIMKVASQSRHLEVQLLCDQ-YGNVAA--LHSRDCS-V---QR---RHQ---------KIIEEGPITVA 321 (2267)
Q Consensus 266 ~-----~~~~I~VEeyI~g~rhieVqvl~D~-~G~vi~--l~~Rdcs-v---qr---r~q---------KiieeaPa~~l 321 (2267)
. .-...+||||+.| .|+.+++|.+. +|++.. +..|..+ + -| +.| -.+.+.|.. +
T Consensus 190 g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~ 267 (366)
T PRK13277 190 GVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-I 267 (366)
T ss_pred CcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc-c
Confidence 0 1134579999987 69999999983 675443 3332111 0 00 101 122245555 5
Q ss_pred CHHHHHHHHHHHHHHHHHcC------ceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHH--HHcC
Q 000092 322 PLETVKKLEQAARRLAKCVN------YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVA--VGMG 393 (2267)
Q Consensus 322 ~~e~~~eL~~~A~rla~aLG------y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~--iA~G 393 (2267)
.+.+.+++.+.+.+++++++ ..|++++|++++ +++++|++|+|||++|..++. +.+|.|.+.+.+. +.+|
T Consensus 268 rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~-~d~~~~V~EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~G 345 (366)
T PRK13277 268 RESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVT-PDLDFVVYDVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTG 345 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEc-CCCcEEEEEEcCCcCCCccce-eecCCCcHHHHhcCccccC
Confidence 66788999999999999976 689999999998 478999999999999999877 4689999999999 9999
Q ss_pred CCCCCchhhhh
Q 000092 394 IPLWQIPEIRR 404 (2267)
Q Consensus 394 ~pL~~ipdir~ 404 (2267)
.++. ++|+.
T Consensus 346 rRIa--~Eik~ 354 (366)
T PRK13277 346 RRIA--MEIKR 354 (366)
T ss_pred Ccch--HHHHH
Confidence 8876 34543
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=197.85 Aligned_cols=197 Identities=21% Similarity=0.291 Sum_probs=161.8
Q ss_pred CccCCC----CCCChHHHhcccccCCCCcccccccCCCceecccc--------------cc-------------ceEEEE
Q 000092 1852 VEYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG--------------WA-------------RTVVTG 1900 (2267)
Q Consensus 1852 ~~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~--------------~a-------------~~vVtG 1900 (2267)
..++|. ..-+.+++|+. |+|.|||.|+... |. ++||+|
T Consensus 47 ~~vcp~c~~h~ri~A~~Ri~~-----------llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg 115 (294)
T COG0777 47 LKVCPKCGHHMRISARERLEA-----------LLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTG 115 (294)
T ss_pred hhcccccCcccccCHHHHHHH-----------hhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEE
Confidence 345665 67788999987 8999999998652 21 799999
Q ss_pred EEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchh
Q 000092 1901 RARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQR 1980 (2267)
Q Consensus 1901 ~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~ 1980 (2267)
.|+|+|.||.+++.|+.|+ ||+++...++|++|+++.|...++|+|+|..++| .
T Consensus 116 ~g~i~G~pvv~av~df~Fm---------------------gGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGG-----A 169 (294)
T COG0777 116 EGTINGLPVVLAVMDFAFM---------------------GGSMGSVVGEKITRAIERAIEDKLPLVLFSASGG-----A 169 (294)
T ss_pred eeEECCeEEEEEEEecccc---------------------ccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcc-----h
Confidence 9999999999999999988 9999999999999999999999999999999998 8
Q ss_pred hhhhchHHH--HHH---HHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1981 DLFEGILQA--GST---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1981 ~e~~gilk~--ga~---iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
.|++|++.. .|+ .+..++++..|.|+|++ .+..||.-+.++. -.|+ ++|.|+|.+|+.||.-+
T Consensus 170 RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt--~PTtGGVsASfA~--lGDi--~iAEP~AlIGFAGpRVI------ 237 (294)
T COG0777 170 RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLT--DPTTGGVSASFAM--LGDI--IIAEPGALIGFAGPRVI------ 237 (294)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEec--CCCccchhHhHHh--ccCe--eecCcccccccCcchhh------
Confidence 999998753 344 45557778899999999 7889986555553 3577 99999999999999433
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
++.-.+-+| |.+++++.+.++|+||.||+
T Consensus 238 -----------------------------------------EQTire~LP----------egfQ~aEfLlehG~iD~iv~ 266 (294)
T COG0777 238 -----------------------------------------EQTIREKLP----------EGFQTAEFLLEHGMIDMIVH 266 (294)
T ss_pred -----------------------------------------hhhhcccCC----------cchhhHHHHHHcCCceeeec
Confidence 111112233 66889999999999999999
Q ss_pred ccchHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLR 2148 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~ 2148 (2267)
..+.|..+...|.
T Consensus 267 R~elr~tla~ll~ 279 (294)
T COG0777 267 RDELRTTLASLLA 279 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888876554
|
|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=192.22 Aligned_cols=166 Identities=22% Similarity=0.388 Sum_probs=137.9
Q ss_pred HHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEee-cCCCCCcCeEEECCHHHHHHH
Q 000092 180 AQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKA-SWGGGGKGIRKVHNDDEVRAL 258 (2267)
Q Consensus 180 aq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKP-s~GgGGkGIr~V~s~eEL~~a 258 (2267)
++++|+|+|||.. +.+.+++..+++++|||+|+|+ ..|..|||..++++.+|+..+
T Consensus 1 l~~~gip~~~~~~-----------------------i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a 57 (172)
T PF02222_consen 1 LDELGIPTAPYAT-----------------------IDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKA 57 (172)
T ss_dssp HHHTT--B-EEEE-----------------------ESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHH
T ss_pred CcccCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHH
Confidence 5789999999987 8899999999999999999995 556699999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 000092 259 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAK 338 (2267)
Q Consensus 259 ~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~ 338 (2267)
++.+ ...++++|+|++..+|++|.+.++.+|++..+... +.+++.+......+|+. +++++.+++.+.|.++++
T Consensus 58 ~~~~----~~~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp~~-en~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~ 131 (172)
T PF02222_consen 58 WQEL----GGGPCILEEFVPFDREISVIVARDQDGEIRFYPPV-ENVHRDGILHESIAPAR-ISDEVEEEAKEIARKIAE 131 (172)
T ss_dssp HHHT----TTSCEEEEE---ESEEEEEEEEEETTSEEEEEEEE-EEEEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHH
T ss_pred HHhc----CCCcEEEEeccCCcEEEEEEEEEcCCCCEEEEcCc-eEEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHH
Confidence 9887 36799999999999999999999999987765433 56677776666778987 889999999999999999
Q ss_pred HcCceeeeEEEEEEEccCCc-EEEeeeCccCcCCccee
Q 000092 339 CVNYVGAATVEYLYSMETGE-YYFLELNPRLQVEHPVT 375 (2267)
Q Consensus 339 aLGy~Ga~tVEfl~d~~~g~-~yfLEINpRlqgehpvt 375 (2267)
+|+|+|+..|||+++. +|+ +||.|+.||+..+..+|
T Consensus 132 ~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSGh~T 168 (172)
T PF02222_consen 132 ALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSGHWT 168 (172)
T ss_dssp HHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGGGGH
T ss_pred HcCcEEEEEEEEEEec-CCCEEEEEeccCCccCcccEe
Confidence 9999999999999994 676 99999999998775555
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=185.16 Aligned_cols=70 Identities=27% Similarity=0.449 Sum_probs=67.4
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
.+++.|+|||||+|++|+|++||+|++||+|+++|+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 82 ~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 82 AGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 357889999999999999999999999999999999999999999999999988 9999999999999987
|
|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=190.12 Aligned_cols=186 Identities=20% Similarity=0.278 Sum_probs=132.2
Q ss_pred HHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHH--HHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHH
Q 000092 179 IAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVR 256 (2267)
Q Consensus 179 laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~ 256 (2267)
+++++|||||+|.. +. -.+... .......++||++|||..+|+|.||.+|+|.+||.
T Consensus 1 l~~~~gI~tp~~~~----~~-----------------~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~ 59 (203)
T PF07478_consen 1 LLKSAGIPTPPYVV----VK-----------------KNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELE 59 (203)
T ss_dssp HHHHTT-BB-SEEE----EE-----------------TTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHH
T ss_pred ChhhcCCCCCCEEE----Ee-----------------cccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHH
Confidence 57899999999976 10 111211 34567889999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccc-----ccccc----ceEEEecCCCCCCHHHHH
Q 000092 257 ALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS-----VQRRH----QKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 257 ~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcs-----vqrr~----qKiieeaPa~~l~~e~~~ 327 (2267)
.+++++... +++++||+||+| +|++|-+++++...+....+.... ....+ .......|+. +++++.+
T Consensus 60 ~ai~~~~~~--~~~vlVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~ 135 (203)
T PF07478_consen 60 EAIEKAFKY--DDDVLVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQE 135 (203)
T ss_dssp HHHHHHTTT--HSEEEEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHH
T ss_pred HHHHHHhhh--cceEEEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHH
Confidence 999998743 579999999965 999999999876555444332221 11111 2233445665 8899999
Q ss_pred HHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 328 eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
+|.+.|.++.+++|.+|.+.|||+++ ++|++||+|+|+-++-+. |..-...|+++.++.-++
T Consensus 136 ~i~~~a~~a~~~lg~~~~~RiD~rv~-~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 136 KIKEIAKKAFKALGCRGYARIDFRVD-EDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEE-TTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEec-cCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999998 478999999999887431 323334577766655443
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=188.75 Aligned_cols=236 Identities=19% Similarity=0.277 Sum_probs=183.0
Q ss_pred cCCCEEEe-CCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWP-GWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~p-G~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|.++| +.|+..|+-.+...++-.|++++|++..+-..++||..+|.+++..|+|+++|..- ..
T Consensus 60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~-------------~~ 126 (317)
T COG1181 60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVAL-------------TR 126 (317)
T ss_pred ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeee-------------ec
Confidence 45677776 46788899999999999999999999999999999999999999999999998760 00
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
... +.....+..+..+||++|||...|++.|+.+|++.+|+..+.+.+... +..+++|+++. +++++|.++
T Consensus 127 -----~~~-~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~--d~~vl~e~~~~-~rei~v~vl 197 (317)
T COG1181 127 -----DEY-SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY--DRDVLREQGIT-GREIEVGVL 197 (317)
T ss_pred -----ccc-hhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh--CCceeeccCCC-cceEEEEec
Confidence 000 223344666789999999999999999999999999999987777654 67899999998 699999999
Q ss_pred EcCCCCEEEecc-----cccccccccceEEE------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCC
Q 000092 289 CDQYGNVAALHS-----RDCSVQRRHQKIIE------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2267)
Q Consensus 289 ~D~~G~vi~l~~-----Rdcsvqrr~qKiie------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g 357 (2267)
.+.. ....+.. ..-.+.-+..|.+. ..|+ .+++++.+++.+.|.++.+++|..|.+.+||++++.+|
T Consensus 198 ~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g 275 (317)
T COG1181 198 GNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEG 275 (317)
T ss_pred CCcc-cceecCceEEecCCCeEEeeeccccCCCCceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCC
Confidence 8854 2222211 11123333344444 3355 38999999999999999999999999999999994458
Q ss_pred cEEEeeeCccCcCC-c---ceehhhhcCCHHHHHHH
Q 000092 358 EYYFLELNPRLQVE-H---PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 358 ~~yfLEINpRlqge-h---pvtE~vtGvDL~~~qL~ 389 (2267)
++|++|+|+.+|-. + |..-...|++...+...
T Consensus 276 ~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~ 311 (317)
T COG1181 276 EFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLR 311 (317)
T ss_pred CEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHH
Confidence 99999999999833 2 44444456666655444
|
|
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=172.57 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=68.3
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
+++.|+|||+|++++++|++||+|++||+|++||||||+|+|.||.+|+|+.| +++||.|+.||+|++|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999 899999999999999864
|
|
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-16 Score=176.83 Aligned_cols=158 Identities=20% Similarity=0.312 Sum_probs=87.7
Q ss_pred hcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEE
Q 000092 170 LGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 249 (2267)
Q Consensus 170 lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V 249 (2267)
|.||..+.+.++++|||+|..... .......+|+|+||..|.||.||+++
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~------------------------------~~~~~~~~~~viKp~~G~Gg~~i~~~ 50 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRD------------------------------SEPEPIDGPWVIKPRDGAGGEGIRIV 50 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------------------------------------EESS--SSSEEEEESS-------B--
T ss_pred CCCHHHHHHHHHccCCCCCCcccc------------------------------ccccccCCcEEEEeCCCCCCCCeEEE
Confidence 689999999999999999932220 00112378999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccc--cccceEEEecCCCCCCHHHHH
Q 000092 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQ--RRHQKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 250 ~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvq--rr~qKiieeaPa~~l~~e~~~ 327 (2267)
++.+++........ ++|+|++| .++++.+++++.+..+..+.|...-. .+...-....|.. ....+
T Consensus 51 ~~~~~~~~~~~~~~--------i~Qe~i~G-~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~ 118 (161)
T PF02655_consen 51 DSEDELEEFLNKLR--------IVQEFIEG-EPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKE 118 (161)
T ss_dssp SS--TTE---------------EEEE---S-EEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHH
T ss_pred CCchhhccccccce--------EEeeeeCC-EEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHH
Confidence 99998877654332 99999987 79999999987544443333321110 0011122234543 34488
Q ss_pred HHHHHHHHHHHHc-CceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 328 KLEQAARRLAKCV-NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 328 eL~~~A~rla~aL-Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
++.+.+.++++++ |+.|...|||+++ ++++|+||||||++++
T Consensus 119 ~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viEINPR~t~S 161 (161)
T PF02655_consen 119 EIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIEINPRFTGS 161 (161)
T ss_dssp HHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEEEESS--GG
T ss_pred HHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEEEcCCCCCC
Confidence 9999999999999 9999999999998 6899999999999863
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=169.42 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=130.6
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcE-EEeecCCCCCcCeEEE
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPA-MIKASWGGGGKGIRKV 249 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPV-VIKPs~GgGGkGIr~V 249 (2267)
++|..+|++++++||||++|.. +++.+++.+++++.++|+ ||||..-.+||||.++
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~-----------------------f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~ 57 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKV-----------------------FTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIA 57 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEE-----------------------ESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCeeE-----------------------ECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEe
Confidence 4899999999999999999876 789999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE-----------
Q 000092 250 HNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE----------- 314 (2267)
Q Consensus 250 ~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie----------- 314 (2267)
++.+|..++++++.... .+++++||+|+.| +|+++.++.|+. +++.+. .-+.|.++.+
T Consensus 58 ~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp-----~aqD~Kr~~dgd~GpnTGGMG 130 (194)
T PF01071_consen 58 DDREEALEALREIFVDRKFGDAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPLP-----PAQDHKRLFDGDTGPNTGGMG 130 (194)
T ss_dssp SSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S-EEEEEEEEEESS-EEEEEE-----EBEEEEEEETTTEEEEESESE
T ss_pred CCHHHHHHHHHHhccccccCCCCCcEEEEeccCC-eEEEEEEEEcCC-eEEECc-----chhccccccCCCCCCCCCCcc
Confidence 99999999999988632 2468999999987 899999999975 344432 2244544432
Q ss_pred -ecCCCCCCHHHHHHHHH-HHHHHHHHc-----CceeeeEEEEEEEccCCcEEEeeeCccCc
Q 000092 315 -EGPITVAPLETVKKLEQ-AARRLAKCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQ 369 (2267)
Q Consensus 315 -eaPa~~l~~e~~~eL~~-~A~rla~aL-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlq 369 (2267)
.+|.+.++++..+++.+ ....+.++| .|+|+..+.++++ ++++++||.|.|++
T Consensus 131 a~sp~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt--~~Gp~vlEfN~RfG 190 (194)
T PF01071_consen 131 AYSPVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLT--EDGPKVLEFNVRFG 190 (194)
T ss_dssp EEESTTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEE--TTEEEEEEEESSGS
T ss_pred ceeecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEe--CCCcEEEEEeCCCC
Confidence 25888888888777765 555555555 8899999999999 67799999999997
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-16 Score=185.88 Aligned_cols=194 Identities=20% Similarity=0.158 Sum_probs=146.9
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++.+.||+.+.+|.-|+.+.+- . +|.|| +| +|..| ++.+||+|+
T Consensus 62 ~~v~~aR~~~Rp~~~d~i~~l~----------------d-----~f~El-----~g---------d~~~~-dd~avV~Gl 105 (322)
T CHL00198 62 QRLHLVRQSERPTTLDYIPYIL----------------D-----EWIEL-----HG---------DRGGS-DDPALVGGI 105 (322)
T ss_pred HHHHhhcCCCCCCHHHHHHHHh----------------H-----HHHHH-----cc---------ccccC-CCCceEEEE
Confidence 5889999999999999998772 1 46776 45 33323 345699999
Q ss_pred EEecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|++||.+ ..+|+.++...+|..|++++|.+.++|+|+|.|++||+++...+-
T Consensus 106 gri------~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~----- 174 (322)
T CHL00198 106 GKI------NGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEK----- 174 (322)
T ss_pred EEE------CCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHH-----
Confidence 987 9999999999995 589999999999999999999999999999999999999843111
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc--ccccccccccccccCc
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT--GSGAIAGAYSRAYKET 1743 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~--~sG~iag~~s~a~~~i 1743 (2267)
.|. .+ .+.+|+. .++ .|
T Consensus 175 ----------~G~----------~~------------------------------aiar~l~~~a~~-----------~V 193 (322)
T CHL00198 175 ----------LGQ----------GE------------------------------AIAVNLREMFSF-----------EV 193 (322)
T ss_pred ----------HhH----------HH------------------------------HHHHHHHHHHcC-----------CC
Confidence 111 00 0011211 111 37
Q ss_pred eEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccc---ccCCc-cccccccCceEEEec
Q 000092 1744 FTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLGG-PKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1744 ptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~---~~lGG-~~i~~~nGv~d~~v~ 1815 (2267)
|+||+|+|+|.|||||...++|+++|.+++.+.+.+|+.--..+-++.-..+ +.++= ++=+.+.|++|.+++
T Consensus 194 P~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 194 PIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred CEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 9999999999999999999999999999999999999988877766541101 11221 122357999999885
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-16 Score=197.26 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=146.6
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++...||+.+++|..||...+- + +|.|| +| +|.- .++.+||+|+
T Consensus 150 erV~~aR~p~RP~~~Dyi~~i~------------------d---df~EL-----~G---------dr~~-~dD~aIVtGl 193 (762)
T PLN03229 150 QRVNIARHPNRPTFLDHIFNIT------------------D---KFVEL-----HG---------DRAG-YDDPAIVTGI 193 (762)
T ss_pred HHHHHHhCCCCCcHHHHHHHHH------------------H---HHHHh-----cC---------cccC-CCCCCeEEEE
Confidence 4788999999999999997662 1 56676 44 2332 2334799999
Q ss_pred EEecCccccCCcEEEEEEecccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T~--------~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|+|||+++ .+|+..+...+|..|++++|.+.++|+|+|.|++||+++...+..
T Consensus 194 GRI------dGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~---- 263 (762)
T PLN03229 194 GTI------DGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEEL---- 263 (762)
T ss_pred EEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCchhHHH----
Confidence 987 99999999999974 899999999999999999999999999999999999998332211
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc-cccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG-SGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~-sG~iag~~s~a~~~ip 1744 (2267)
|. .+ .+..|+.. ++ -.||
T Consensus 264 -----------Gq----------~~------------------------------aIArnl~amas----------l~VP 282 (762)
T PLN03229 264 -----------GQ----------GE------------------------------AIAHNLRTMFG----------LKVP 282 (762)
T ss_pred -----------hH----------HH------------------------------HHHHHHHHHhC----------CCCC
Confidence 10 00 00112221 11 1379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccc---ccCCc-cccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLGG-PKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~---~~lGG-~~i~~~nGv~d~~v~ 1815 (2267)
+||+|+|+|.|||||.+.+||+++|.+++.++++||..--..+-++.-..+ +.++= ++=+...|++|.+++
T Consensus 283 ~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 283 IVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred EEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeecc
Confidence 999999999999999999999999999999999999988887766541111 11211 122457999999886
|
|
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=173.65 Aligned_cols=297 Identities=18% Similarity=0.177 Sum_probs=209.8
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
-|+|+|+......+.||..+.-+.+. +...|.-.. .+.|++.....-++. ..+.. +..+.++|++
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~-----------~ls~d~plP-t~Sr~vr~t~~w~gp-hd~ga--iafLrd~Aek 69 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVL-----------ALSADGPLP-TYSRIVRVTTHWNGP-HDEGA--IAFLRDFAEK 69 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEE-----------EEecCCCCc-chhhhheeeeccCCC-CcccH--HHHHHHHHhh
Confidence 48899988777777888766543332 333343222 388888888777653 23333 8899999999
Q ss_pred cCCCE---EEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 130 TRVDA---VWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 130 ~~vDa---V~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
++-.. |-.|-|..--.....+.|.+. ..++-|+....+.+.+|-.....|.+.|+|.|.+..
T Consensus 70 hglkg~LLva~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~-------------- 134 (415)
T COG3919 70 HGLKGYLLVACGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTYL-------------- 134 (415)
T ss_pred cCcCceEEEecCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceEE--------------
Confidence 97653 333333222222233444442 334559999999999999999999999999999776
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCC-----CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG-----GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG-----GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
++|..+. .+.++-||+|+||-.|+| -+....+.+.+|+..++..+.++...+.++||+||+|+.
T Consensus 135 ---------v~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGg 203 (415)
T COG3919 135 ---------VNSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGG 203 (415)
T ss_pred ---------ecchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCC
Confidence 5665554 456789999999999883 445567889999999999999988778999999999986
Q ss_pred ee--eEEEEEcCCCCEEEecccccccccccceEEEecC-CC--CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 282 HL--EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP-IT--VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 282 hi--eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaP-a~--~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
|- +...+-|+ |+.++- |+-.|-.|.....+- +. .+.+ .+++.++|.++.+.+++.|...|||++|+.|
T Consensus 204 E~qfsyaAlw~~-g~pvae----ftarr~rqyPvdfgytst~vevvD--n~Q~i~aar~~L~si~htGlvevefK~D~RD 276 (415)
T COG3919 204 ENQFSYAALWDK-GHPVAE----FTARRLRQYPVDFGYTSTVVEVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRD 276 (415)
T ss_pred cccchHHHHHhC-CCchhh----hhcchhhcCCcccccccEEEEecC--cHHHHHHHHHHHHhhcccceEEEEEEecCCC
Confidence 53 33344454 455433 444333332221110 00 1111 4688999999999999999999999999999
Q ss_pred CcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCC
Q 000092 357 GEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395 (2267)
Q Consensus 357 g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~p 395 (2267)
|.+.++|+|||.+-..-+.. +.|+||-...+.+..+.+
T Consensus 277 Gs~KlldvNpRpw~wfgl~t-aaG~nLg~~Lwa~~~~~~ 314 (415)
T COG3919 277 GSYKLLDVNPRPWRWFGLVT-AAGYNLGRYLWADRINNE 314 (415)
T ss_pred CceeEEeecCCCcceeeEEe-cccccccceEEeeecCCc
Confidence 99999999999987665543 589999888877766653
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=176.08 Aligned_cols=227 Identities=18% Similarity=0.236 Sum_probs=161.3
Q ss_pred cCCCEEEeCCCcCCCC-CchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGWGHASEI-PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn-~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
...|++++--+..... -.+.+.++..|..++ ++++++..|+||..+.+++..+|+|+|+|..
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i---------------- 139 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLI---------------- 139 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEE----------------
Confidence 3568888654322222 334457788899888 9999999999999999999999999999876
Q ss_pred ccccccccCCHHHHHHH-HhhhCCcEEEeecCCCCCcCeEEECCHH-HHHHHHHHHHhhCCCCcEEEEEeccccc-eeeE
Q 000092 209 DVYRQACVYTTEEAIAS-CQVVGYPAMIKASWGGGGKGIRKVHNDD-EVRALFKQVQGEVPGSPIFIMKVASQSR-HLEV 285 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~-a~~IGyPVVIKPs~GgGGkGIr~V~s~e-EL~~a~~~~~~e~~~~~I~VEeyI~g~r-hieV 285 (2267)
+.+.++.... .+.+|||+|+||.+|+||+||.+|++.+ ++.+..+...... ...+++|+|++.+. ..-.
T Consensus 140 -------~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~-~~~~ivQeyi~~~~~~~rr 211 (318)
T COG0189 140 -------TRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEG-RKLIIVQEYIPKAKRDDRR 211 (318)
T ss_pred -------EcCHHHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccc-cceEehhhhcCcccCCcEE
Confidence 5666555555 4557899999999999999999999999 8888877766442 13699999998765 4444
Q ss_pred EEEEcCCCCEEEecccccccccc----cceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRR----HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr----~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
-+++| |.+++.+ ..+|. +.+-.-..-....+.++-+++++.|+++++++|. +...||++.+ ++++|+
T Consensus 212 ivv~~--~~~~~~y----~~~R~~~~~~~R~N~a~Gg~~e~~~l~~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~V 282 (318)
T COG0189 212 VLVGG--GEVVAIY----ALARIPASGDFRSNLARGGRAEPCELTEEEEELAVKAAPALGL-GLVGVDIIED--KDGLYV 282 (318)
T ss_pred EEEeC--CEEeEEe----eeccccCCCCceeeccccccccccCCCHHHHHHHHHHHHHhCC-eEEEEEEEec--CCCcEE
Confidence 45555 4555532 12221 1111111111112223346788999999999986 6777999998 788999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHH
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
+|+|.-+.+-+. .+..+|+|.....++..
T Consensus 283 ~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 283 TEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred EEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 999996554443 44568888888777653
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=191.62 Aligned_cols=151 Identities=20% Similarity=0.182 Sum_probs=116.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCC-ceecccccc----------ceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLEGWA----------RTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gS-F~E~~~~~a----------~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
....+|++|+. |||+|| |+|+...++ ++||||+|+|+|+||+|+++|++++
T Consensus 80 gkltaReRI~~-----------LlD~gS~F~El~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~tv~------- 141 (569)
T PLN02820 80 NKLLPRERIDR-----------LLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPTVK------- 141 (569)
T ss_pred CCCCHHHHHHH-----------HcCCCCCeEEchhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCCcc-------
Confidence 56789999997 899999 999875433 6799999999999999999998766
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHH---HhcCCCC
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQP 2003 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP 2003 (2267)
||++++.+++|++|+++.|.++++|||+|+|++|.......+........++++.+ ++...+|
T Consensus 142 --------------GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP 207 (569)
T PLN02820 142 --------------GGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIP 207 (569)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999994322122222222234566655 5556799
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCc
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|++|+ |.++.||+|.. .+..+. +.+.+++.+++.||
T Consensus 208 ~Isvv~-G~~~gGgAy~~---a~~D~v--im~~~~a~i~~aGP 244 (569)
T PLN02820 208 QIALVL-GSCTAGGAYVP---AMADES--VIVKGNGTIFLAGP 244 (569)
T ss_pred EEEEEe-CCCChHHHHHH---HhCCce--EEecCCcEEEecCH
Confidence 999999 33444566643 222333 55678999999999
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=170.88 Aligned_cols=194 Identities=17% Similarity=0.132 Sum_probs=144.2
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|.+.||+.|...+.|+++.+- . +|.|| +| +|..+ .+.+||+++
T Consensus 6 ~~v~~ar~~~r~~are~I~~L~----------------D-----~F~El-----~g---------~~~~~-~d~~vItG~ 49 (256)
T PRK12319 6 RILKEARDQGRLTTLDYATLIF----------------D-----DFMEL-----HG---------DRHFR-DDGAVVGGI 49 (256)
T ss_pred HHHHHhccCCCCCHHHHHHHhC----------------c-----hheec-----cC---------CCCCC-CCCcEEEEE
Confidence 4788999999999999998771 1 36676 23 12222 234599999
Q ss_pred EEecCccccCCcEEEEEEecc--------cccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~--------T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|++||. ++++|++.+...+|..|++++|.+.++|+|+|.|++|++++...|-
T Consensus 50 gri------~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~----- 118 (256)
T PRK12319 50 GYL------AGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEE----- 118 (256)
T ss_pred EEE------CCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHh-----
Confidence 877 999999999864 4689999999999999999999999999999999999999843210
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
.|.... +.+|+. .|++ .||
T Consensus 119 ----------~G~~~~----------------------------------------ia~~~~~~s~~----------~VP 138 (256)
T PRK12319 119 ----------RGQGEA----------------------------------------IARNLMEMSDL----------KVP 138 (256)
T ss_pred ----------ccHHHH----------------------------------------HHHHHHHHhCC----------CCC
Confidence 121000 011111 0111 379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccc-----ccccccCCccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~ev-----y~s~~~lGG~~i~~~nGv~d~~v~ 1815 (2267)
+|++|+|+|.|+|||...++|+++|.+++.+.+.+|+..-..+=++. .....++ .+.-+.+.|++|-+++
T Consensus 139 ~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~-~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 139 IIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDGSRATEAAELMKI-TAGELLEMGVVDKVIP 213 (256)
T ss_pred EEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCC-CHHHHHHCCCCcEecC
Confidence 99999999999999999999999999999999999987776654322 0111233 4455678999999985
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=174.58 Aligned_cols=145 Identities=23% Similarity=0.240 Sum_probs=115.9
Q ss_pred CChHHHhcccccCCCCcccccccCCCceeccc-----------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1860 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLE-----------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1860 yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~-----------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
.++|++|+. |||+|||.|+.. ..+++||+|+|+|+|+||.|+++|++++
T Consensus 6 ltAReRi~~-----------LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~--- 71 (274)
T TIGR03133 6 ANARERARG-----------LLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQ--- 71 (274)
T ss_pred CCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCcc---
Confidence 467888886 899999999921 1258999999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcc-----cCCcEEEEecCCCCCCchhhhhhch--HHHHHHHHH
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-----EELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVE 1995 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~-----~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~ 1995 (2267)
||++++..++|++|+++.|.+ .++|+|+|.|++|. .++++. +-..++++.
T Consensus 72 ------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~~L~~~a~i~~ 128 (274)
T TIGR03133 72 ------------------GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANAGLIAIAEIMR 128 (274)
T ss_pred ------------------CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHHHHHHHHHHHH
Confidence 899999999999999999987 57899999999993 344443 334567776
Q ss_pred HHhcCC--CCEEEEEccCCc--CCch-hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 1996 NLRTYK--QPVFVYIPMMAE--LRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 1996 al~~~~--vP~i~vI~~~g~--~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
++..++ +|+|++|. |+ |+|| +|.+.. .|+ ++|.+++++++.||+-+
T Consensus 129 ~~~~ls~~vP~Isvv~--Gp~gc~GG~a~~a~l----~D~--vim~~~a~i~~aGP~VI 179 (274)
T TIGR03133 129 AILDARAAVPVIGVIG--GRVGCFGGMGIAAGL----CSY--LIMTEEGRLGLSGPEVI 179 (274)
T ss_pred HHHHHhCCCCEEEEEe--CCCCcchHHHHHHhc----CCE--EEEeCCcEEeccCHHHH
Confidence 655554 99999998 66 4555 443333 477 89999999999999554
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=174.53 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=146.9
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++.+.||+.+.+|.-|+.+.+- . +|.|| +| +|..| ++.+||+|+
T Consensus 59 ~~v~~ar~~~Rp~~~d~i~~l~------------------d---~f~EL-----~g---------d~~~~-dd~aiVtG~ 102 (316)
T TIGR00513 59 QRLQLARHPDRPYTLDYIELIF------------------D---DFFEL-----AG---------DRAYA-DDKAIVGGI 102 (316)
T ss_pred HHHHHHhCCCCCchHHHHHHHh------------------h---hheee-----cc---------ccCCC-CCCceEEEE
Confidence 4789999999999998887551 1 57777 44 33334 355699999
Q ss_pred EEecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|++||.. .++|+.++...+|..|++++|.+.++|+|+|.|++||+++...+-.
T Consensus 103 ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~---- 172 (316)
T TIGR00513 103 ARL------DGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEER---- 172 (316)
T ss_pred EEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHH----
Confidence 987 9999999999984 7899999999999999999999999999999999999998432111
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
|.. .. +.+|+. .++ ..||
T Consensus 173 -----------G~~---------~a-------------------------------ia~~l~a~s~----------~~VP 191 (316)
T TIGR00513 173 -----------GQS---------EA-------------------------------IARNLREMAR----------LGVP 191 (316)
T ss_pred -----------HHH---------HH-------------------------------HHHHHHHHHc----------CCCC
Confidence 100 00 011111 011 1379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccc---cccCC-ccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-GPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s---~~~lG-G~~i~~~nGv~d~~v~ 1815 (2267)
+||+|+|+|.|||||...++|+++|.+++.+.+.+|+.-...+-++.-.. .+.++ +++-....|++|-+++
T Consensus 192 ~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 192 VICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred EEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCeEecc
Confidence 99999999999999999999999999999999999987777665542000 11122 3556678999999986
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-15 Score=176.33 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=118.2
Q ss_pred CCChHHHhcccccCCCCcccccccCCCceeccc--------c---------ccceEEEEEEEECCeEEEEEEEecccccc
Q 000092 1859 SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE--------G---------WARTVVTGRARLGGIPVGIVAVETQTVMQ 1921 (2267)
Q Consensus 1859 ~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~--------~---------~a~~vVtG~arl~G~pVgViA~e~~~~~~ 1921 (2267)
.-.+|++|+. |||+|||.|+.. . .+++||||+|+|+|+||.|+++|++++
T Consensus 14 ~ltARERi~~-----------LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~-- 80 (301)
T PRK07189 14 EASARERAAA-----------LLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFM-- 80 (301)
T ss_pred eCCHHHHHHH-----------hcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCcc--
Confidence 3578888886 899999999921 1 247999999999999999999998877
Q ss_pred ccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccC-----CcEEEEecCCCCCCchhhhhhch--HHHHHHHH
Q 000092 1922 VIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE-----LPLFILANWRGFSGGQRDLFEGI--LQAGSTIV 1994 (2267)
Q Consensus 1922 ~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~-----lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv 1994 (2267)
||++++.+++|++|+++.|.+.+ +|+|+|.|++|. .++++. +..+++++
T Consensus 81 -------------------GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~~L~~~a~i~ 136 (301)
T PRK07189 81 -------------------GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANAGLAAIAEIM 136 (301)
T ss_pred -------------------CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHHHHHHHHHHH
Confidence 99999999999999999999999 999999999993 344443 44557777
Q ss_pred HHHhcCC--CCEEEEEccCCc--CCch-hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 1995 ENLRTYK--QPVFVYIPMMAE--LRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 1995 ~al~~~~--vP~i~vI~~~g~--~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.++..++ +|+|++|. |. |+|| +|.+.. .|+ ++|.++|++++.||+-+
T Consensus 137 ~~~~~ls~~VP~I~vv~--G~~gc~GG~a~~a~l----~D~--iIm~~~a~iglaGP~VI 188 (301)
T PRK07189 137 RAIVDLRAAVPVIGLIG--GRVGCFGGMGIAAAL----CSY--LIVSEEGRLGLSGPEVI 188 (301)
T ss_pred HHHHHHhCCCCEEEEEc--CCCCCcHHHHHHHhc----CCE--EEEECCcEEeccCHHHH
Confidence 7765554 99999998 65 5555 444332 487 89999999999999544
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-15 Score=176.96 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=146.3
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
++.+.||+.+.+|.-|+++.+- . +|.|| +| +|..| ++.+||+|+
T Consensus 59 ~~v~~ar~~~Rp~~~d~I~~l~------------------d---~f~El-----~g---------dr~~~-dd~aiV~G~ 102 (319)
T PRK05724 59 QKVQLARHPQRPYTLDYIELLF------------------T---DFTEL-----HG---------DRAFA-DDKAIVGGL 102 (319)
T ss_pred HhhhcccCCCCCCHHHHHHHHh------------------h---HHHHH-----cC---------CcCCC-CCCceEEEE
Confidence 3678999999999988777651 1 57777 45 34344 345799999
Q ss_pred EEecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +||+|+|+|||.+ +++|++.+...+|..|++++|.+.++|+|+|.|++||+++...+-
T Consensus 103 ari------~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~----- 171 (319)
T PRK05724 103 ARL------NGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEE----- 171 (319)
T ss_pred EEE------CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHh-----
Confidence 987 9999999999994 689999999999999999999999999999999999999843210
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
.|.. .. +..|+. .+. ..||
T Consensus 172 ----------~G~~---------~a-------------------------------ia~~l~~~a~----------~~VP 191 (319)
T PRK05724 172 ----------RGQS---------EA-------------------------------IARNLREMAR----------LKVP 191 (319)
T ss_pred ----------ccHH---------HH-------------------------------HHHHHHHHhC----------CCCC
Confidence 1110 00 011111 011 1379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccc-----ccccccCCccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREV-----YSSHMQLGGPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~ev-----y~s~~~lGG~~i~~~nGv~d~~v~ 1815 (2267)
+||+|+|+|.|||||...++|+++|.+++.+.+.+|..--..+-++. .....++ +++-+...|++|-+++
T Consensus 192 ~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae~~~i-ta~~l~~~g~iD~II~ 266 (319)
T PRK05724 192 IICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAEAMKI-TAQDLKELGIIDEIIP 266 (319)
T ss_pred EEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHHHcCC-CHHHHHHCCCceEecc
Confidence 99999999999999999999999999999999999987766665432 0111333 3455678999999985
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=174.07 Aligned_cols=195 Identities=20% Similarity=0.157 Sum_probs=147.2
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|.+.||+.+.+|..||+..+- . +|.|| +| +|..| ++.+||+|+
T Consensus 129 q~vq~aRhp~RP~~~d~I~~i~------------------d---df~EL-----~G---------dr~~~-dD~aIVtG~ 172 (431)
T PLN03230 129 QRLSVARHPNRPTFLDHVLNMT------------------D---KWVEL-----HG---------DRAGF-DDPAIVCGI 172 (431)
T ss_pred HHHHHHhCCCCCCHHHHHHHhh------------------h---HHhhh-----cC---------cccCC-CCCCeEEEE
Confidence 4889999999999999997762 1 57787 56 44444 455699999
Q ss_pred EEecCccccCCcEEEEEEeccccc--------CCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVTFK--------AGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T~~--------~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +|++|+|++||.++. .|++.+...+|..|++++|.+.++|+|+|.|++||+++...+-.
T Consensus 173 grI------~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~---- 242 (431)
T PLN03230 173 GSM------EGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEEL---- 242 (431)
T ss_pred EEE------CCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHH----
Confidence 977 999999999998653 59999999999999999999999999999999999998442211
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccc-ccccccccccccccCce
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLT-GSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~-~sG~iag~~s~a~~~ip 1744 (2267)
|. ... +..|+. .+++ .||
T Consensus 243 -----------Gq---------a~a-------------------------------IAr~l~ams~l----------~VP 261 (431)
T PLN03230 243 -----------GQ---------GEA-------------------------------IAFNLREMFGL----------RVP 261 (431)
T ss_pred -----------hH---------HHH-------------------------------HHHHHHHHhcC----------CCC
Confidence 10 000 011111 1111 379
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccc---cccCC-ccccccccCceEEEec
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSS---HMQLG-GPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s---~~~lG-G~~i~~~nGv~d~~v~ 1815 (2267)
+|++|+|++.|||||...+||+++|.+++.+++.||+.--..+-++.-.. .+.++ +++-+.+.|++|-+++
T Consensus 262 iISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 262 IIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred EEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCCCCeEecc
Confidence 99999999999999999999999999999999999988777665432100 11222 3344568999999985
|
|
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=154.18 Aligned_cols=124 Identities=13% Similarity=0.247 Sum_probs=86.7
Q ss_pred eEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecc-cceEEEEcCceeecccCCCCCceecCCCceeEEEEccCC
Q 000092 628 SYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEA-AGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDG 706 (2267)
Q Consensus 628 ~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~-~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~G 706 (2267)
.|+|++||+.|+|++..+.++....-. .......... ..-.-......-.-....++..|+|||+|+|++|+|++|
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAAP---AQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAVG 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCccccccc---cCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCCC
Confidence 589999999999999887533100000 0000000000 000000000000000123467899999999999999999
Q ss_pred CEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 707 SHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 707 d~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
|.|++||+|++||+|||+++|.||.+|+|..+ +++|+.|..|++|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 99999999999999999999999999999988 9999999999999987
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=194.68 Aligned_cols=310 Identities=21% Similarity=0.227 Sum_probs=209.1
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEE
Q 000092 8 SAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87 (2267)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~ 87 (2267)
|.++||+.+|||+|.+ ..+..+.-+-+|....-|.. .+..|++++.++.+-+..
T Consensus 86 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~~~~-------------- 139 (864)
T TIGR02068 86 QNLAGMPVGFGRTRET---ATPGVYNVVVEYSHEQVGRY---------AGRLAVDLVRSAIDDGPF-------------- 139 (864)
T ss_pred HHHhCCCcccceEEec---CCCCeEEEEEEehhHHHhHH---------HHHHHHHHHHHHHhcCCC--------------
Confidence 5689999999999763 22222322223333222222 367788888888754321
Q ss_pred eccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEe--------CCCcCCCCCchHHHHHHcCCeE
Q 000092 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP--------GWGHASEIPELPDTLSTKGIIF 159 (2267)
Q Consensus 88 t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~p--------G~G~~sEn~~la~~l~~~GI~f 159 (2267)
|.+..-.+++...+....++ +...|++.|.+.++....- |||.-.. .+.+ -.+
T Consensus 140 ---~~~~~~~~~~~~~~~~~~g~--------st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~------~~~~--~~t 200 (864)
T TIGR02068 140 ---DLEQALQRLRDLVADASLGP--------STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQK------RIQA--TET 200 (864)
T ss_pred ---CHHHHHHHHHHHHHhccCCC--------cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEE------EEEe--ecC
Confidence 33333445555444444432 2578999999999875442 3332211 1111 112
Q ss_pred eCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 160 LGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 160 iGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
--.+..++..+.||..++++++++|||+|+|.. +.+.+++.++++++|||+||||..
T Consensus 201 ~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~-----------------------~~s~~ea~~~~~~ig~PvVVKP~~ 257 (864)
T TIGR02068 201 DRTSAIAVEIACDKDLTKEILSDAGVPVPEGTV-----------------------VQSAEDAWEAAQDLGYPVVIKPYD 257 (864)
T ss_pred CCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHcCCCEEEEECC
Confidence 236788999999999999999999999999865 678999999999999999999999
Q ss_pred CCCCcCeEE-ECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccc-------------
Q 000092 240 GGGGKGIRK-VHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------- 305 (2267)
Q Consensus 240 GgGGkGIr~-V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsv------------- 305 (2267)
|++|+||.+ +++.+++.++++.+... +..++||+|++| +++.+-++. |++++...|....
T Consensus 258 g~~G~GV~l~v~s~~el~~a~~~a~~~--~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 258 GNHGRGVTINILTRDEIESAYEAAVEE--SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred CCCccCEEEEeCCHHHHHHHHHHHHhh--CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHH
Confidence 999999998 99999999999988754 368999999987 899886653 4666665554311
Q ss_pred ------ccc---cceEEE---------------------------------------ecCCCCCCHHHHHHHHHHHHHHH
Q 000092 306 ------QRR---HQKIIE---------------------------------------EGPITVAPLETVKKLEQAARRLA 337 (2267)
Q Consensus 306 ------qrr---~qKiie---------------------------------------eaPa~~l~~e~~~eL~~~A~rla 337 (2267)
.|| |.+... .+-+...+.++.++..+.|++++
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 011 111110 11122345677788999999999
Q ss_pred HHcCceeeeEEEEEEEc-----cCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHc
Q 000092 338 KCVNYVGAATVEYLYSM-----ETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 338 ~aLGy~Ga~tVEfl~d~-----~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~ 392 (2267)
+++|+. .+.||++... +..+..+||+|+.++-. |..-..-.+.|+....+....
T Consensus 412 ~~~gl~-i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 412 KIIGLD-IAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred HHhCCC-eEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 999985 4449998741 13456899999998854 433223357778877777654
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=163.06 Aligned_cols=184 Identities=21% Similarity=0.313 Sum_probs=108.9
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEE
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKV 249 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V 249 (2267)
.||..+.++++++|||+|++.. +.+.+++.++.+++ +||+|+||..|++|+||.++
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~~-----------------------~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i 58 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETRV-----------------------TNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLI 58 (190)
T ss_dssp HBHHHHHHHHHHTT-----EEE-----------------------ESSHHHHHHHHHHH--SSEEEE-SB-------EEE
T ss_pred CCHHHHHHHHHHCCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEe
Confidence 6999999999999999999776 67899999999999 89999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEeccccc--eeeEEEEEcCCCCEEEeccccccc-ccccceEEEecCCCCCCHHHH
Q 000092 250 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSR--HLEVQLLCDQYGNVAALHSRDCSV-QRRHQKIIEEGPITVAPLETV 326 (2267)
Q Consensus 250 ~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r--hieVqvl~D~~G~vi~l~~Rdcsv-qrr~qKiieeaPa~~l~~e~~ 326 (2267)
++.+++...++..... ..++++|+||+... ++.|-++++ +++....|.-.- .-|+.- -..+. ..+-++-
T Consensus 59 ~~~~~~~~~l~~~~~~--~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~-~~g~~--~~~~~l~ 130 (190)
T PF08443_consen 59 NSPDELESLLDAFKRL--ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNL-SRGGK--VEPYDLP 130 (190)
T ss_dssp ESHCHHHHHHH-------TTT-EEEE----SS---EEEEEETT---EEEEEEE---------------------EE----
T ss_pred cCHHHHHHHHHHHHhc--cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhh-ccCce--EEEecCC
Confidence 9999999987765422 46899999998754 788877764 566544442110 111100 00000 0112234
Q ss_pred HHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHH
Q 000092 327 KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 327 ~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~i 390 (2267)
+++.+.|.++++++|+ ..+.||++-+ ++++||+|+|+.++- ..+|..+|+|+....+..
T Consensus 131 ~e~~~~a~~~~~~lgl-~~~giDi~~~--~~~~~v~EvN~~~~~--~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 131 EEIKELALKAARALGL-DFAGIDILDT--NDGPYVLEVNPNPGF--RGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEEEEEE--TTEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CEEEEEEEec--CCCeEEEEecCCchH--hHHHHHHCcCHHHHHHhh
Confidence 6788899999999997 5777996655 678999999998874 457778999999887653
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=137.73 Aligned_cols=68 Identities=29% Similarity=0.489 Sum_probs=65.4
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
..|+|||+|+|.+|+|++||+|++||+|+++|+|||+++|+||.+|+|.++ +++|+.|..|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999988 99999999999999884
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-14 Score=181.78 Aligned_cols=124 Identities=18% Similarity=0.349 Sum_probs=91.9
Q ss_pred eEEEEECCeEEEEEEEEecC---C--ceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEE
Q 000092 628 SYTLRMNESEIEAEIHTLRD---G--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYL 702 (2267)
Q Consensus 628 ~y~v~inG~~~~V~v~~l~d---g--~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~ 702 (2267)
.|.|..+|+.+.|++...++ | .+.+.+||..+.+.+.+........ ........++++|.|||||+|++|+
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~----~~~~a~~~~~~~v~apm~G~V~~~~ 540 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIE----RSSVNNKIGPGDITVAIPGSIIAIH 540 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeeccccccccccc----ccccCCCCCCCeEecCcceEEEEEE
Confidence 34455555555555543221 1 3456678877766554332111111 1111234567899999999999999
Q ss_pred ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|++||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|.+|++|++|+
T Consensus 541 V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 999999999999999999999999999999999988 99999999999999996
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=177.61 Aligned_cols=122 Identities=17% Similarity=0.348 Sum_probs=98.1
Q ss_pred eeeEeecCeEEEEEEEeecC---ceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeeccc
Q 000092 607 QVSLNIEGSKYRIDMVRRGP---GSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQN 683 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g~---~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~ 683 (2267)
.+++.++|++|.+++...|+ .+|.+.+||+..+|.+...+..... ...+
T Consensus 467 ~~~v~i~Gk~~~i~~~~~g~~~~r~~~~~~ng~~~~v~v~d~~~~~~~----------------------------~~~~ 518 (592)
T PRK09282 467 EFKVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMPEEVVVEPLKEIVVG----------------------------GRPR 518 (592)
T ss_pred EEEEEECCEEEEEEEeeccCCCcceEEEEecCceeeeeccCccccccc----------------------------ccCC
Confidence 46666778888888777665 4566667777666666433221100 0234
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
..++..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|+++ +++|+.|.+|++|++|++
T Consensus 519 ~~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCCceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 5678899999999999999999999999999999999999999999999999888 999999999999999864
|
|
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-13 Score=131.16 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=65.7
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+.|.||+||+|++|.+++||+|++||+|+++|+|||++++.||.+|+|.++ +++|+.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999888 99999999999999985
|
|
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-13 Score=133.10 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=63.3
Q ss_pred ceecCCCceeEE------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 689 KLVAETPCKLLR------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 689 ~l~APmPG~vv~------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
.+++|++|++.+ |+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|+.|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 589999999877 99999999999999999999999999999999999999 8899999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=132.07 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=64.5
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcc-ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM-KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM-KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.|+|||||+|++|+|++||.|++||+|++||+| |+.++|.||.+|+|+.+ +++|+.|..|++|++|+.+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 589999999999999999999999999999997 46669999999999988 9999999999999999643
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=169.05 Aligned_cols=147 Identities=22% Similarity=0.168 Sum_probs=117.6
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||.|+|+|+||.|+++|++++
T Consensus 29 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~Gr~v~v~a~D~t~~--- 94 (512)
T TIGR01117 29 GKMTARERLAL-----------LFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTIDGRLVYAFAQDFTVM--- 94 (512)
T ss_pred CCCCHHHHHHH-----------hcCCCcEEEecCccccCCCCccccccCCCCceEEEEEEEECCEEEEEEEECCccc---
Confidence 45788899887 8999999998541 247999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhch--HHHHHHHHHHHh--
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVENLR-- 1998 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~al~-- 1998 (2267)
||++++..++|+.|+++.|.+.++|||+|.|+.|. .|++++ +...++++..++
T Consensus 95 ------------------gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGa-----rm~eg~~~l~~~~~~~~~~~~~ 151 (512)
T TIGR01117 95 ------------------GGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGA-----RIQEAVDALKGYGDIFYRNTIA 151 (512)
T ss_pred ------------------ccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCC-----CccccchhhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999994 333333 223345554333
Q ss_pred cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 1999 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
...+|+|+++. |.+.||.+...+. .|+ ++|.++ +.+++.||.-
T Consensus 152 s~~iP~Isvv~--G~~~GG~a~~~al---~D~--vim~~~~a~i~~aGP~v 195 (512)
T TIGR01117 152 SGVVPQISAIM--GPCAGGAVYSPAL---TDF--IYMVDNTSQMFITGPQV 195 (512)
T ss_pred cCCCcEEEEEe--cCCCcHHHHHHHh---cCc--eEEeccceEEEecChHH
Confidence 34689999999 7777776555442 588 999996 6899999954
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-12 Score=154.71 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=132.7
Q ss_pred HHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc
Q 000092 153 STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232 (2267)
Q Consensus 153 ~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP 232 (2267)
+..|+.++ +++++++.+.||..+..+++ +++|++.. ..+.+++.++.++.|+|
T Consensus 111 e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v-----------------------~~~~~~~~~~~~~~~~~ 163 (338)
T PRK12458 111 ARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHI-----------------------SRNKEYIREFLEESPGD 163 (338)
T ss_pred HhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEE-----------------------eCCHHHHHHHHHHcCCC
Confidence 34577766 99999999999999987766 67777654 45778888888888765
Q ss_pred -EEEeecCCCCCcCeEEECCHHH--HHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEE------Eeccccc
Q 000092 233 -AMIKASWGGGGKGIRKVHNDDE--VRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVA------ALHSRDC 303 (2267)
Q Consensus 233 -VVIKPs~GgGGkGIr~V~s~eE--L~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi------~l~~Rdc 303 (2267)
+|+||..|.||+||.++++.++ +...++.... ..++++|+|+++..+.++.++.- .|+++ +...|-.
T Consensus 164 pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~---~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~g~~~a~~R~~ 239 (338)
T PRK12458 164 KMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG---DGYVIAQEYLPGAEEGDVRILLL-NGEPLERDGHYAAMRRVP 239 (338)
T ss_pred eEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh---CCCEEEEEcccCCCCCCEEEEEE-CCEEEeeccceeEEEEec
Confidence 9999999999999999987664 5555554332 45899999998644444444431 25666 4433311
Q ss_pred ccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHc---CceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhc
Q 000092 304 SVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV---NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE 380 (2267)
Q Consensus 304 svqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aL---Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtG 380 (2267)
.- ...+.....-......++-+++++.|.+++..+ |+ ..+.||++- .+++|||++-.+..+-.+..+|
T Consensus 240 ~~--~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL-~~~gVDli~------~~l~EIN~~sp~g~~~~~~~~g 310 (338)
T PRK12458 240 AG--GDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGL-FFVGLDIVG------DKLVEVNVFSPGGLTRINKLNK 310 (338)
T ss_pred CC--CCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCC-eEEeEEEEC------CEEEEEeCCCcchHHHHHHHhC
Confidence 00 000000000000111123345666777776665 54 366788862 2589999998877777778899
Q ss_pred CCHHHHHHHHHc
Q 000092 381 INLPAAQVAVGM 392 (2267)
Q Consensus 381 vDL~~~qL~iA~ 392 (2267)
+|+....++...
T Consensus 311 ~d~a~~i~~~i~ 322 (338)
T PRK12458 311 IDFVEDIIEALE 322 (338)
T ss_pred CCHHHHHHHHHH
Confidence 999999988653
|
|
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-12 Score=164.74 Aligned_cols=248 Identities=16% Similarity=0.098 Sum_probs=162.8
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe-------CCCHHHHHHhcCHHHH
Q 000092 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL-------GPPATSMAALGDKIGS 176 (2267)
Q Consensus 104 e~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi-------GPs~eam~~lgDK~~~ 176 (2267)
..+..++..+ .-.+...++..|.+.|.--|+. +...|.+.---....++ -.+.-++..|.||..+
T Consensus 408 ~~~~l~g~e~--~~~stQ~Li~~Ai~rG~v~vlD------~~~~~~~L~~g~~~~~v~~~s~ts~tS~ia~~i~~DK~~T 479 (737)
T TIGR01435 408 RAYKLVGFED--MELSTQWKLFDVIQKGKVEILD------EAEQFLRLQKGDHIEYVKNANMTSKDNYVSPLIMENKVVT 479 (737)
T ss_pred cccccccccc--ccHhHHHHHHHHHHCCCEEEeC------CCCCeeEeecCCcceEEecceecCCccHHHHHHhcCHHHH
Confidence 3455555443 2245678888888877322331 11112111000111122 2467789999999999
Q ss_pred HHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCcCeEEECC---H
Q 000092 177 SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGKGIRKVHN---D 252 (2267)
Q Consensus 177 k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGkGIr~V~s---~ 252 (2267)
|++++++|||||+|.. +++.+++.+....+ ||||||||..|++|+||.++.+ .
T Consensus 480 K~iL~~aGIPVP~g~~-----------------------~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~ 536 (737)
T TIGR01435 480 KKVLAEAGFRVPFGDE-----------------------FSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTL 536 (737)
T ss_pred HHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCH
Confidence 9999999999999765 56777777766666 7999999999999999999876 7
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccc---------cc----------ccc---cc
Q 000092 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDC---------SV----------QRR---HQ 310 (2267)
Q Consensus 253 eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdc---------sv----------qrr---~q 310 (2267)
+++.+++..+... +..++||+|++| +|+.|-|+++ ++++...|.- ++ .+| |.
T Consensus 537 eel~~Al~~A~~~--~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~ 610 (737)
T TIGR01435 537 EDFQEALNIAFSE--DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHR 610 (737)
T ss_pred HHHHHHHHHHHhc--CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCccc
Confidence 8999999887644 457999999987 8999988864 4554433321 11 001 11
Q ss_pred ----eEE---------------E-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 311 ----KII---------------E-------------------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 311 ----Kii---------------e-------------------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
||. + ++-+..+++++.+...+.|+++++++|.. .+.||++.
T Consensus 611 ~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~ 689 (737)
T TIGR01435 611 KPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLII 689 (737)
T ss_pred CCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEe
Confidence 110 0 01122345677888999999999999997 88899998
Q ss_pred EccC-------CcEEEeeeCccCcCC-cceehhhhcCCHHHHHHH
Q 000092 353 SMET-------GEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 353 d~~~-------g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~ 389 (2267)
..-+ ..+.|||+|++++-. |..--.-.+-|+....+.
T Consensus 690 ~di~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild 734 (737)
T TIGR01435 690 PDETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIK 734 (737)
T ss_pred cCCCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHH
Confidence 5211 236799999999854 322222245555555554
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=167.43 Aligned_cols=147 Identities=23% Similarity=0.221 Sum_probs=117.2
Q ss_pred CChHHHhcccccCCCCcccccccCCCceecccc-------------ccceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1860 CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG-------------WARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1860 yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~-------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
..+|+.|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|+++.
T Consensus 8 ~~areRi~~-----------L~D~gSF~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t~~------- 69 (493)
T PF01039_consen 8 LTARERIDL-----------LLDPGSFRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFTVL------- 69 (493)
T ss_dssp EEHHHHHHH-----------HSGTTEBEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETTSG-------
T ss_pred cCHHHHHHH-----------hcCCCCCcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEecccee-------
Confidence 457778876 8999999999643 357999999999999999999998877
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHHHhcC--CC
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLRTY--KQ 2002 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~~~--~v 2002 (2267)
||++++..++|+.|+++.|.+.++|+|.|.|+.|. .+ +|++++. ...++++.+++.+ .+
T Consensus 70 --------------gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l~dsgGa-~~--r~~eg~~~l~~~g~i~~~~~~~~~~i 132 (493)
T PF01039_consen 70 --------------GGSVGEVHGEKIARAIELALENGLPLVYLVDSGGA-FL--RMQEGVESLMGMGRIFRAIARLSGGI 132 (493)
T ss_dssp --------------GGTBSHHHHHHHHHHHHHHHHHTEEEEEEEEESSB-CG--GGGGHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --------------cCCCCcccceeeehHHHHHHHcCCCcEEecccccc-cc--ccchhhhhhhhhHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999996 22 4455443 3455665554432 69
Q ss_pred CEEEEEccCCcCCc-hhHhhhccccCCccceeecccc-cEEEeeCccch
Q 000092 2003 PVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2049 (2267)
Q Consensus 2003 P~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~-A~~gvl~pega 2049 (2267)
|+|+++. |.+.| |||.+..+ |+ +++.++ +.+++.||.-.
T Consensus 133 P~I~vv~--G~~~Gg~A~~~~~~----d~--~i~~~~~a~i~l~GP~vv 173 (493)
T PF01039_consen 133 PQISVVT--GPCTGGGAYLAALS----DF--VIMVKGTARIFLAGPRVV 173 (493)
T ss_dssp -EEEEEE--SEEEGGGGHHHHHS----SE--EEEETTTCEEESSTHHHH
T ss_pred CeEEEEc--cccccchhhccccc----Cc--cccCccceEEEecccccc
Confidence 9999999 55555 77766543 77 888887 99999999543
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=165.58 Aligned_cols=249 Identities=16% Similarity=0.096 Sum_probs=164.8
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHH-------cCCeEeCCCHHHHHHhcCHHHH
Q 000092 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLST-------KGIIFLGPPATSMAALGDKIGS 176 (2267)
Q Consensus 104 e~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~-------~GI~fiGPs~eam~~lgDK~~~ 176 (2267)
..+.+++..+ .-.+...|++.|++.++....-.-+ ..+...... .+...-..+..++..++||..+
T Consensus 420 ~~~~L~g~~~--~~~sT~~li~aA~~rGi~v~~ld~~-----~~~l~l~~g~~~~~v~~~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 420 RPYALKGYED--MELSTQILLFDAIQRGIQVEILDEQ-----DQFLKLQKGDHVEYVKNGNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred CccccCCccc--CChhHHHHHHHHHHCCCeEEEEcCC-----cceehhccCCCeeEEEeccccCCCHHHHHHHhhCHHHH
Confidence 3455555544 2245678999999999887664311 011111100 1111122455578888999999
Q ss_pred HHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhh-hCCcEEEeecCCCCCcCeEEE---CCH
Q 000092 177 SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV-VGYPAMIKASWGGGGKGIRKV---HND 252 (2267)
Q Consensus 177 k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~-IGyPVVIKPs~GgGGkGIr~V---~s~ 252 (2267)
+.+++++|||+|++.. +.+.+++...+++ .|||+||||..|++|+||.++ ++.
T Consensus 493 k~lL~~~GIpvP~~~~-----------------------~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~ 549 (752)
T PRK02471 493 KKILAEAGFPVPAGDE-----------------------FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASL 549 (752)
T ss_pred HHHHHHCCcCCCCEEE-----------------------EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCH
Confidence 9999999999999765 5677888777766 489999999999999999986 568
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccc---------c-------c---cc---cc
Q 000092 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS---------V-------Q---RR---HQ 310 (2267)
Q Consensus 253 eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcs---------v-------q---rr---~q 310 (2267)
+++.+++..+... +..++||+|++| +++.|-+++ |+++....|... + . +| |.
T Consensus 550 eel~~A~~~a~~~--~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~ 623 (752)
T PRK02471 550 EDYEKALEIAFRE--DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHR 623 (752)
T ss_pred HHHHHHHHHHHhc--CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccc
Confidence 9999999887643 457999999986 899998773 355555444321 1 0 00 11
Q ss_pred eE---EE------------------------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEE
Q 000092 311 KI---IE------------------------------------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYL 351 (2267)
Q Consensus 311 Ki---ie------------------------------------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl 351 (2267)
+. |. ++-+..++..+.+...+.|+++++++|+. .+.||++
T Consensus 624 ~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii 702 (752)
T PRK02471 624 TPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLI 702 (752)
T ss_pred ccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEE
Confidence 00 00 01122345677889999999999999987 4449999
Q ss_pred EEccC-----C--cEEEeeeCccCcCC-cceehhhhcCCHHHHHHH
Q 000092 352 YSMET-----G--EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 352 ~d~~~-----g--~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~ 389 (2267)
...-+ . ++.|||+|++++-. |..--.-...|+....++
T Consensus 703 ~~di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d 748 (752)
T PRK02471 703 IPDLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILD 748 (752)
T ss_pred eCCCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHH
Confidence 86211 2 68899999999853 322111234455555544
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-12 Score=169.01 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=84.8
Q ss_pred cCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEcc
Q 000092 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2267)
Q Consensus 625 g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~ 704 (2267)
+...|++.+||+.++|.+...+. ........ . . ... + ........+++.|.|||||+|++|+|+
T Consensus 471 g~~~~~~~vnG~~~~V~v~d~~~---~~~~~~~~--~--~-~~~-------~-~~~~a~~~~~~~v~ap~~G~v~~~~V~ 534 (582)
T TIGR01108 471 ASGSYTVEVEGKAFVVKVSPGGD---VSQITASA--P--A-NTS-------G-GTVAAKAGAGTPVTAPIAGSIVKVKVS 534 (582)
T ss_pred CceEEEEEECCEEEEEEEcCCcc---cccccccc--c--c-ccc-------c-ccccCCCCCCCeEeCCccEEEEEEEeC
Confidence 45679999999999999864321 11100000 0 0 000 0 011123456889999999999999999
Q ss_pred CCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000092 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2267)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~L 751 (2267)
+||+|++||+|++||+||||++|.||.+|+|+.+ +++|+.|+.|++|
T Consensus 535 ~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 535 EGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 9999999999999999999999999999999988 9999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-12 Score=142.08 Aligned_cols=190 Identities=18% Similarity=0.156 Sum_probs=135.2
Q ss_pred hHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHh
Q 000092 148 LPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227 (2267)
Q Consensus 148 la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~ 227 (2267)
+-+..++. ...+|+++++++.|.||+.+...++.+ |++|+++. + .
T Consensus 91 Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e--------------------------------~-~ 135 (307)
T COG1821 91 LTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE--------------------------------W-A 135 (307)
T ss_pred HHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc--------------------------------c-c
Confidence 34555555 667899999999999999999999999 99998653 0 0
Q ss_pred hhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc
Q 000092 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR 307 (2267)
Q Consensus 228 ~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr 307 (2267)
..+--.||||.+|.||.|+....+..++ .++|+||+| .|++|.+.....-.+.++...+..+
T Consensus 136 ~~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~GEkv~pLsvNrQfi~~-- 197 (307)
T COG1821 136 EEPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSVGEKVLPLSVNRQFIIF-- 197 (307)
T ss_pred cCCceEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEecCCccccceechhhhhh--
Confidence 1122479999999999999998887663 377899988 7999994433222222321111111
Q ss_pred ccceE-EEecCCCCCCHHHHHHHHHHHHHHHHHcC-ceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHH
Q 000092 308 RHQKI-IEEGPITVAPLETVKKLEQAARRLAKCVN-YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPA 385 (2267)
Q Consensus 308 r~qKi-ieeaPa~~l~~e~~~eL~~~A~rla~aLG-y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~ 385 (2267)
...++ ...++++ .+.++.+++.+.|++..+.++ ++|...||+.+. +++|++|||||+.-..--...+++-++.+
T Consensus 198 ~~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TTp~vg~sr~~~~sv~~ 273 (307)
T COG1821 198 AGSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTTPTVGLSRVTPESVAE 273 (307)
T ss_pred ccceeeeccCcCC-CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCcceeeeeccccHHHHH
Confidence 01111 1234555 566899999999999999995 899999999997 68999999999975543344556777777
Q ss_pred HHHHHHcCC
Q 000092 386 AQVAVGMGI 394 (2267)
Q Consensus 386 ~qL~iA~G~ 394 (2267)
+.+.-..|.
T Consensus 274 LLl~~~~g~ 282 (307)
T COG1821 274 LLLEGPTGK 282 (307)
T ss_pred HHhcCcccc
Confidence 766655553
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=165.16 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=87.8
Q ss_pred cCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEcc
Q 000092 625 GPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS 704 (2267)
Q Consensus 625 g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~ 704 (2267)
+...|++.+||+.+.|.|...++ -..+...+....... .........++..|.|||||+|++|+|+
T Consensus 476 g~~~~~~~vnG~~~~V~v~~~~~-~~~~~~~~~~~~~~~-------------~~~~a~~~~~~~~V~Ap~~G~I~~~~V~ 541 (593)
T PRK14040 476 GSETYTVEVEGKAYVVKVSEGGD-ISQITPAAPAAAPAA-------------AAAAAPAAAAGEPVTAPLAGNIFKVIVT 541 (593)
T ss_pred CCeEEEEEECCEEEEEEECCCCc-ccccccccccccccc-------------ccccccCCCCCceEECCccEEEEEEEeC
Confidence 55678999999999999853321 001111221111000 0000112344668999999999999999
Q ss_pred CCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 705 DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 705 ~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|..|++|++|.
T Consensus 542 ~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 542 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999988 99999999999999873
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-12 Score=158.78 Aligned_cols=149 Identities=19% Similarity=0.081 Sum_probs=120.1
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc------------cccceEEEEEEEECCeEEEEEEEeccccccccCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE------------GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPA 1925 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PA 1925 (2267)
....+|+.|+. |+|+|||.|+.. ..++++|||.|+++|++|.|+++|++++
T Consensus 41 GkltaReRv~~-----------LlD~Gsf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~TV~------ 103 (526)
T COG4799 41 GKLTARERVEL-----------LLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVK------ 103 (526)
T ss_pred CcCcHHHHHHH-----------HcCCCchhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCcee------
Confidence 45678999997 789999999853 2347999999999999999999998766
Q ss_pred CCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC--CC
Q 000092 1926 DPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QP 2003 (2267)
Q Consensus 1926 dpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP 2003 (2267)
||+|++-.++|+.|+++.|.+.++|+|.|.|+.|+..+.. ---+...++++...+.++ +|
T Consensus 104 ---------------gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~---v~~l~g~g~iF~~~a~~Sg~IP 165 (526)
T COG4799 104 ---------------GGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEG---VPSLAGYGRIFYRNARASGVIP 165 (526)
T ss_pred ---------------cccccccccchHHHHHHHHHHcCCCEEEEEcccccccccC---ccccccchHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999665443 222445577777766544 89
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
+|++|+ |.+..||+|..-. +|+ ++|..+ +.+.+.||.-
T Consensus 166 qIsvv~-G~c~gGgaY~pal----~D~--~imv~~~~~mfltGP~~ 204 (526)
T COG4799 166 QISVVM-GPCAGGGAYSPAL----TDF--VIMVRDQSYMFLTGPPV 204 (526)
T ss_pred EEEEEE-ecCcccccccccc----cce--EEEEcCCccEEeeCHHH
Confidence 999999 5555556665444 477 888887 8999999853
|
|
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-11 Score=144.32 Aligned_cols=275 Identities=12% Similarity=0.110 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc-EEEEccCCCCCCCccCHH--HHHHHHHHcCCCEE
Q 000092 59 AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD-QFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAV 135 (2267)
Q Consensus 59 ~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD-e~v~vp~~~~~~~Y~dvd--~Il~iA~~~~vDaV 135 (2267)
...+++.++++.|++++ +..+.|......- -.|. ..+.++.. ...|.... ..+. -...|+|
T Consensus 19 st~~L~~aa~~rG~~v~----------~~~~~~l~~~~~~-~~a~~~~~~~~~~--~~~~~~~~~~~~~~---l~~~D~v 82 (312)
T TIGR01380 19 TTFALMEEAQKRGHELF----------FYEPGDLSVVNGE-VFARARPVRVGPN--KQDWYTLGEKVRLS---LGELDAV 82 (312)
T ss_pred hHHHHHHHHHHcCCEEE----------EEehhheEEECCE-EEEEEEEEEeccC--CcceeecCcccccc---cccCCEE
Confidence 66789999999999987 2444443221100 0111 11333211 11111100 1111 1246999
Q ss_pred EeCCC--cCCC---CCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCccc
Q 000092 136 WPGWG--HASE---IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDV 210 (2267)
Q Consensus 136 ~pG~G--~~sE---n~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~ 210 (2267)
++--+ +... ...+.+.++..|+.++ +++++++.+.||..+..++. |+||+..
T Consensus 83 ~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v------------------ 139 (312)
T TIGR01380 83 LMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLV------------------ 139 (312)
T ss_pred EEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEE------------------
Confidence 96532 2111 1245677777898877 88999999999999888763 7888654
Q ss_pred ccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEE
Q 000092 211 YRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQL 287 (2267)
Q Consensus 211 ~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e~~~~~I~VEeyI~g--~rhieVqv 287 (2267)
..+.+++.++.++.| |+|+||..|+||+|+.++++. .++....+... .....++++|+|++. ..++.|-+
T Consensus 140 -----~~~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-~~~~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 140 -----TRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-QRGREPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred -----eCCHHHHHHHHHHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-hccCCcEEEEeccccccCCCEEEEE
Confidence 457888899999888 999999999999999999753 33433333322 222358999999974 35777766
Q ss_pred EEcCCCCEEE-eccccccc-ccc-cce-EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 288 LCDQYGNVAA-LHSRDCSV-QRR-HQK-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 288 l~D~~G~vi~-l~~Rdcsv-qrr-~qK-iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
++ |++++ ...|--.- .-| +-. .....|.. ++++. .++...+...++++|+ ..+.||++- .||+|
T Consensus 213 v~---g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~~-l~~e~-~~ia~~~~~~~~~~gl-~~agVDiig------~~v~E 280 (312)
T TIGR01380 213 ID---GEPIGAAVARIPAGGEFRGNLAVGGRGEATE-LSERD-REICADVAPELKRRGL-LFVGIDVIG------GYLTE 280 (312)
T ss_pred EC---CeEEEEEEEecCCCCCccccccCCceeeccC-CCHHH-HHHHHHHHHHHHhcCC-cEEEEEEeC------CEEEE
Confidence 64 45554 33331110 001 000 00111222 34332 2333334333455665 456688872 47999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHH
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
+|+-=+....-.+.++|+|+....++..
T Consensus 281 vN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 281 VNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred EecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 9986333444455679999999887653
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-12 Score=123.81 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=65.4
Q ss_pred CceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
..++||+||++++ ++|++||.|++||+++++|+|||+++|+||.+|+|.++ +++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999888 99999999999999985
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-12 Score=147.19 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=138.8
Q ss_pred cccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCC
Q 000092 1505 QYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGL 1584 (2267)
Q Consensus 1505 py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~ 1584 (2267)
+|..+...| +.+.||+.+++|+.||.+.+- . +|.|| +| +|..+.
T Consensus 50 iy~~L~~wq-~~q~ARhp~RP~tldyi~~i~----------------~-----df~eL-----~G---------DR~f~d 93 (317)
T COG0825 50 IYSNLTPWQ-RVQLARHPDRPYTLDYIELLF----------------T-----DFVEL-----HG---------DRAFAD 93 (317)
T ss_pred hhccCCHHH-HHHHhhCCCCCcHHHHHHHHH----------------h-----HHHHh-----cC---------ccccCc
Confidence 566555553 678999999999999999882 1 78888 78 777777
Q ss_pred CceeEEEEEEEecCccccCCcEEEEEEecccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCc
Q 000092 1585 NNIGMVAWCMEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGV 1656 (2267)
Q Consensus 1585 n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~--------~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~ 1656 (2267)
+.+ +|+++.++ +|++|+||++.-.. ..|+..|.+.+|-.|++++|.+.++|+|.|.|+.||-.|.
T Consensus 94 D~A-ivgglar~------~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~ 166 (317)
T COG0825 94 DPA-IVGGLARF------GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGI 166 (317)
T ss_pred Chh-heeeeeeE------CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCc
Confidence 666 99999987 99999999997665 7777779999999999999999999999999999999984
Q ss_pred hhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccc
Q 000092 1657 AEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAY 1736 (2267)
Q Consensus 1657 ~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~ 1736 (2267)
.-|= .| |-.+| ..||...--
T Consensus 167 ~AEE---------------rG--------------------------------Q~eAI--------A~nL~em~~----- 186 (317)
T COG0825 167 GAEE---------------RG--------------------------------QSEAI--------ARNLREMAR----- 186 (317)
T ss_pred chhh---------------cc--------------------------------cHHHH--------HHHHHHHhC-----
Confidence 4111 11 11111 123332111
Q ss_pred cccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcc
Q 000092 1737 SRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGR 1789 (2267)
Q Consensus 1737 s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~ 1789 (2267)
-.+|+||+|.|...+|||.-...||+|.|.+++.+.+..|.---..+=+
T Consensus 187 ----LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPEG~AsILWk 235 (317)
T COG0825 187 ----LKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWK 235 (317)
T ss_pred ----CCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecChhhhhhhhhc
Confidence 1589999999999999999999999999999998888887654444433
|
|
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-11 Score=136.45 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|+|||+|++.+ |+|++||.|++||+|++||+|||+++|.|+.+|+|..+ ++.|+.|+.||+|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999998 89999999999999999999999999999999999988 99999999999999874
|
The gene name is accB or fabE. |
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=140.54 Aligned_cols=274 Identities=12% Similarity=0.134 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHH--HHHHHHHHcCCCEEE
Q 000092 59 AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQ--LIVEMAEMTRVDAVW 136 (2267)
Q Consensus 59 ~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd--~Il~iA~~~~vDaV~ 136 (2267)
...++++++++.|++++ +.++.|.......+.--...+.++.. .+.|.... ....+ ...|+|+
T Consensus 20 st~~l~~aa~~~G~~v~----------~~~~~dl~~~~~~i~~~~~~~~~~~~--~~~w~~~~~~~~~~l---~~~D~v~ 84 (316)
T PRK05246 20 STFAMMLEAQRRGHELF----------YYEPDDLSLRGGEVVARARPLTVRDD--KGDWYELGEEQRLPL---ADFDVIL 84 (316)
T ss_pred hHHHHHHHHHHcCCEEE----------EEehhhcEEECCEEEEEEEEEEeccC--CccceeccccccCcc---ccCCEEE
Confidence 45779999999999986 35555554321111000011222221 11221110 00111 1369999
Q ss_pred eCCC--cCCCC---CchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccc
Q 000092 137 PGWG--HASEI---PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVY 211 (2267)
Q Consensus 137 pG~G--~~sEn---~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~ 211 (2267)
+.-+ +..+. ..+.+.++..|+.++ +++++++.+.||..+.++++ ++|++..
T Consensus 85 ~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~------------------- 140 (316)
T PRK05246 85 MRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLV------------------- 140 (316)
T ss_pred EcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEE-------------------
Confidence 6522 11110 124566666788887 88999999999999988765 6777654
Q ss_pred cccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC-HHHHHHHHHHHHhhCCCCcEEEEEecccc--ceeeEEEE
Q 000092 212 RQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN-DDEVRALFKQVQGEVPGSPIFIMKVASQS--RHLEVQLL 288 (2267)
Q Consensus 212 ~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s-~eEL~~a~~~~~~e~~~~~I~VEeyI~g~--rhieVqvl 288 (2267)
..+.+++.++.++.| |+|+||..|+||+||.++.. ..++...++.... ....++++|+|++.. .++.|-++
T Consensus 141 ----~~~~~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-~~~~~~lvQ~~I~~~~~~D~Rv~vv 214 (316)
T PRK05246 141 ----TRDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-HGREPVMAQRYLPEIKEGDKRILLV 214 (316)
T ss_pred ----eCCHHHHHHHHHHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-ccCCeEEEEeccccCCCCCEEEEEE
Confidence 567888888999888 99999999999999999954 4444444443332 224589999999763 57777666
Q ss_pred EcCCCCEEE-eccccccc--cccc-ceEEEecCCCCCCHHHHHHHHHHHHHHH---HHcCceeeeEEEEEEEccCCcEEE
Q 000092 289 CDQYGNVAA-LHSRDCSV--QRRH-QKIIEEGPITVAPLETVKKLEQAARRLA---KCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 289 ~D~~G~vi~-l~~Rdcsv--qrr~-qKiieeaPa~~l~~e~~~eL~~~A~rla---~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
+ |++++ ...|--.- -|-+ .......|.. +++ +..+.|.+++ +.+|+ ..+.||++. . |+
T Consensus 215 -~--g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~~-l~~----~~~~ia~~~~~~l~~~gl-~~~GVDli~-----~-~l 279 (316)
T PRK05246 215 -D--GEPVGYALARIPAGGETRGNLAAGGRGEATP-LTE----RDREICAAIGPELKERGL-IFVGIDVIG-----D-YL 279 (316)
T ss_pred -C--CEEhhheeEecCCCCCcccCccCCceEeccC-CCH----HHHHHHHHHHHHHHHhCC-CEEEEEEeC-----C-EE
Confidence 3 56665 44442110 0101 0000111222 333 3445555555 55554 356788872 1 69
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
+|||..-.+...-.|.+||+|+....++...
T Consensus 280 ~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 280 TEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred EEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999763444777788999999999887654
|
|
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=140.24 Aligned_cols=176 Identities=17% Similarity=0.220 Sum_probs=126.8
Q ss_pred cCCeEeCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHH---H
Q 000092 155 KGIIFLGPPATSMAALGDKIGSSLIAQAAN-------VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAI---A 224 (2267)
Q Consensus 155 ~GI~fiGPs~eam~~lgDK~~~k~laq~aG-------VPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~---~ 224 (2267)
.|+.++ .++++++.|.||..+..++.++| ||+|++.. +.+.+.+. .
T Consensus 91 pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v-----------------------~~~~~~al~~~~ 146 (328)
T PLN02941 91 PDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLV-----------------------VYDDESSIPDAV 146 (328)
T ss_pred CCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEE-----------------------EcCHHHHHHHHH
Confidence 588877 89999999999999999999999 88998765 44554433 3
Q ss_pred HHhhhCCcEEEeecCC---CCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-cceeeEEEEEcCCCCEEEecc
Q 000092 225 SCQVVGYPAMIKASWG---GGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-SRHLEVQLLCDQYGNVAALHS 300 (2267)
Q Consensus 225 ~a~~IGyPVVIKPs~G---gGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g-~rhieVqvl~D~~G~vi~l~~ 300 (2267)
..+++|||+|+||..| +.|++|.++.+.+.|... +.|+++||||.. ++-+-|-+++|. + ....
T Consensus 147 ~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l---------~~p~~lQEfVnh~g~d~RVfVvGd~---v-~~~~ 213 (328)
T PLN02941 147 ALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL---------EPPLVLQEFVNHGGVLFKVYVVGDY---V-KCVR 213 (328)
T ss_pred HHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc---------CCcEEEEEecCCCCEEEEEEEECCE---E-EEEE
Confidence 4567999999999999 889999999999888761 358999999954 577888888764 2 2222
Q ss_pred cccccc-cc-c-ceEEEe---------cCC----C--------CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC
Q 000092 301 RDCSVQ-RR-H-QKIIEE---------GPI----T--------VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET 356 (2267)
Q Consensus 301 Rdcsvq-rr-~-qKiiee---------aPa----~--------~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~ 356 (2267)
| .|.. -+ . ...... .+. . .......++|++.|.++.+++|. +.+.||++.+.++
T Consensus 214 R-~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~ 291 (328)
T PLN02941 214 R-FSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGT 291 (328)
T ss_pred e-cCCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCC
Confidence 3 2220 00 0 000000 000 0 11112345799999999999997 6778999998533
Q ss_pred -CcEEEeeeCccCc
Q 000092 357 -GEYYFLELNPRLQ 369 (2267)
Q Consensus 357 -g~~yfLEINpRlq 369 (2267)
++++++|||.-++
T Consensus 292 ~~~~~VidVN~fP~ 305 (328)
T PLN02941 292 GDRYYVIDINYFPG 305 (328)
T ss_pred CCceEEEEecCCCc
Confidence 4799999999876
|
|
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-11 Score=141.19 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=66.1
Q ss_pred CceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 688 SKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 688 ~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
..|+|||+|++++ |+|++||+|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|++
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 4699999999999 89999999999999999999999999999999999988 999999999999999863
|
|
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-11 Score=130.16 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCceecCCCceeEE-------EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLR-------YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~-------~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|+|||+|++.+ |+|++||+|++||+|+.||+|||.++|.||.+|+|..+ ++.|+.|+.|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 45799999999998 89999999999999999999999999999999999988 99999999999999874
|
|
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-10 Score=109.08 Aligned_cols=66 Identities=30% Similarity=0.569 Sum_probs=63.3
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
+++||++|+|.+|++++|++|++||+++.+|+|||..+|+||.+|+|..+ +++|+.|.+|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47899999999999999999999999999999999999999999999988 9999999999999875
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=131.51 Aligned_cols=199 Identities=15% Similarity=0.098 Sum_probs=120.1
Q ss_pred CCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEeecC
Q 000092 161 GPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASW 239 (2267)
Q Consensus 161 GPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~ 239 (2267)
-++.+....+.||..+..+++++|||+|++... . ..-.+.+++.++++ ++ |||+||..
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~----~---------------s~~~~~~~l~~~~~--~~~~VVVKPl~ 84 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELYGV----I---------------HNQAEVKTIHNIVK--DHPDFVIKPAQ 84 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEEEe----c---------------CchhhHHHHHHHHc--cCCCEEEEECC
Confidence 367778889999999999999999999996540 0 00123344444443 46 69999999
Q ss_pred CCCCcCeEEECCHHH---------------HHHHHHH----HHhhC-CCCcEEEEEecccc-----------ceeeEEEE
Q 000092 240 GGGGKGIRKVHNDDE---------------VRALFKQ----VQGEV-PGSPIFIMKVASQS-----------RHLEVQLL 288 (2267)
Q Consensus 240 GgGGkGIr~V~s~eE---------------L~~a~~~----~~~e~-~~~~I~VEeyI~g~-----------rhieVqvl 288 (2267)
|++|+||.++++.++ +...+.. +.... +...+++|.++... +.+.|-++
T Consensus 85 Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv 164 (317)
T TIGR02291 85 GSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVF 164 (317)
T ss_pred CCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEE
Confidence 999999999976533 4443332 21111 11235665554332 34555555
Q ss_pred EcCCCCEEEeccccccc---cccc---ce--EE-------------------EecCC-----CCCCHHHHHHHHHHHHHH
Q 000092 289 CDQYGNVAALHSRDCSV---QRRH---QK--II-------------------EEGPI-----TVAPLETVKKLEQAARRL 336 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsv---qrr~---qK--ii-------------------eeaPa-----~~l~~e~~~eL~~~A~rl 336 (2267)
.+ ..++-.-| ++. ..++ +- .. +.-|. ..+..+..+++.+.|.++
T Consensus 165 ~~---~~vaa~~R-~~~~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 165 KG---YPVMAMMR-LPTRASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred CC---EEEEEEEE-ccCccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 43 23333233 111 0010 00 00 00111 112235678999999999
Q ss_pred HHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHH
Q 000092 337 AKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQ 387 (2267)
Q Consensus 337 a~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~q 387 (2267)
++++|+ |...+|+++++ ++++++||+|+.++-+ |......|++-.-..
T Consensus 241 ~~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~ 288 (317)
T TIGR02291 241 WELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA-IQIANGAGLLPRLKH 288 (317)
T ss_pred HHhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC-HHHHHHCCCcHHHHH
Confidence 999998 99999999984 5789999999998755 222233444433333
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-10 Score=157.38 Aligned_cols=69 Identities=28% Similarity=0.493 Sum_probs=66.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|.|||||+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..||+|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4579999999999999999999999999999999999999999999999998 99999999999999885
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-09 Score=137.74 Aligned_cols=67 Identities=30% Similarity=0.460 Sum_probs=62.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+-.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 102 ~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~ 169 (463)
T PLN02226 102 SITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSE 169 (463)
T ss_pred CcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCC
Confidence 34589999999999999999999999999999999999999999988 99999999999999997543
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=134.09 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=62.1
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.|..|++|++++...
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999999999988 99999999999999998654
|
|
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-09 Score=102.42 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=57.9
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
+|++.+|++++|++|++||+++.+|+|||.++|+||.+|+|..+ ++.|+.+.+|+.|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 78999999999999999999999999999999999999999988 9999999999999874
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-09 Score=134.55 Aligned_cols=65 Identities=20% Similarity=0.356 Sum_probs=61.9
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+..+
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 479999999999999999999999999999999999999999988 99999999999999998654
|
|
| >PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=128.91 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
...|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 14 ~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 14 VTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3469999999999999999999999999999999999999999888 99999999999999998654
|
|
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-07 Score=105.90 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=176.5
Q ss_pred hHHHHHHhcCCCCCccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCC
Q 000092 34 EVDEFCRSLGGKKPIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGT 112 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~ 112 (2267)
.+.++++...- .+|-|+- +...|+.++.-||++|++|+ +++- .-....-.....||+++.+.
T Consensus 6 ~ileil~~Y~~----~~i~Iat~gSHSaL~Il~GAK~EGF~Ti---------~v~~-~gr~~~Y~~f~~a~e~i~v~--- 68 (361)
T COG1759 6 EILEILENYDL----EDITIATIGSHSALQILDGAKEEGFRTI---------AVCQ-RGREKPYEKFPVADEVIIVD--- 68 (361)
T ss_pred HHHHHHHhccc----cceEEEEeecchHHHHhhhHHhcCCcEE---------EEEe-cCccchHHhhchhheEEEec---
Confidence 34456655522 2344443 46899999999999999985 3332 22222223345578888884
Q ss_pred CCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 000092 113 NNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2267)
Q Consensus 113 ~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~ 190 (2267)
+|.|+ +.|.+-.++. ++|+.-.|......-.-....+.-++..|+ -..++.-.|...-+.++.++|++.|.-
T Consensus 69 ---~f~dil~~~iqe~L~~~--n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~~ 142 (361)
T COG1759 69 ---KFSDILNEEIQEELREL--NAIFIPHGSFVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPKK 142 (361)
T ss_pred ---hhHHHhhHHHHHHHHHc--CeEEecCCceEEEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCcc
Confidence 45433 2344444444 444433232222211111222344566665 345666669999999999999999983
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC---
Q 000092 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP--- 267 (2267)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~--- 267 (2267)
..+++|+ .-|||+|...--||+|-.++.|.+|+.+..+++....-
T Consensus 143 -------------------------~~~PeeI-------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~ 190 (361)
T COG1759 143 -------------------------YKSPEEI-------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITE 190 (361)
T ss_pred -------------------------cCChHHc-------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcch
Confidence 4466664 45999999999999999999999999999988875321
Q ss_pred --CCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc----------cc-------e--EEEecCCCCCCHHHH
Q 000092 268 --GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR----------HQ-------K--IIEEGPITVAPLETV 326 (2267)
Q Consensus 268 --~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr----------~q-------K--iieeaPa~~l~~e~~ 326 (2267)
-....||+|+-|+ ++-.+.+...--+.+-+.+-|.-.+.. .| + ++...|.. +-+.+.
T Consensus 191 edlkna~IeEYv~G~-~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRESLL 268 (361)
T COG1759 191 EDLKNARIEEYVVGA-PFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV-LRESLL 268 (361)
T ss_pred hhhhhceeeEEeecc-ceeeeeeeccccCceeEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcchh-hHHHHH
Confidence 1357899999885 565655533211223332222211110 11 1 12233554 556677
Q ss_pred HHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 327 KKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 327 ~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
.++.+++.++.++. |..|+++.|.++++ +=.+++.|+.+|+.++.
T Consensus 269 ~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~Ri~gGT 319 (361)
T COG1759 269 PKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGT 319 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEeccccCCc
Confidence 77888888877765 78899999999995 67899999999997653
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=124.03 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=100.6
Q ss_pred CCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhh
Q 000092 1583 GLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKA 1662 (2267)
Q Consensus 1583 g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~ 1662 (2267)
+..+. +|+|..+| +|++|-+++||+.|++|+++...+.|..+.+|+|.+.+||+|.+.+.+| ||+ +.-..
T Consensus 334 ~y~~t-lvtGfarl------nG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q~~IPLi~l~ni~G-fm~--g~~~e 403 (536)
T KOG0540|consen 334 GYGDT-LVTGFARL------NGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQRNIPLIFLQNITG-FMV--GRAAE 403 (536)
T ss_pred ccccc-eeeeeeeE------CCEEEEEeccCchhcccccchhhhhhhHHHHHHHHhcCCcEEEEEccCC-ccc--cchhh
Confidence 33344 78999988 9999999999999999999999999999999999999999999999888 887 43333
Q ss_pred hccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccC
Q 000092 1663 CFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKE 1742 (2267)
Q Consensus 1663 l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ 1742 (2267)
+++++ ..| +-++ +.-|-..
T Consensus 404 ~~gIa-------K~g---------------------------------------------------Aklv---~a~a~ak 422 (536)
T KOG0540|consen 404 AGGIA-------KHG---------------------------------------------------AKLV---YAVACAK 422 (536)
T ss_pred hhchh-------hhh---------------------------------------------------hhhh---hhhhhcc
Confidence 33333 011 0010 1222345
Q ss_pred ceEEEEEcCcccchhhhh----hccCCeEEEecCCcceecch-HH
Q 000092 1743 TFTLTYVTGRTVGIGAYL----ARLGMRCIQRLDQPIILTGF-SA 1782 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl----~~lgd~~I~~~~a~i~ltGp-~a 1782 (2267)
+|.||++||++.| |+|- ..++|++++.+++.|.+.|. +|
T Consensus 423 vpkITiit~~syG-G~y~m~sr~~~gd~~yawP~A~IavmG~~~a 466 (536)
T KOG0540|consen 423 VPKITIITGGSYG-GNYAMCSRGYSGDINYAWPNARIAVMGGKQA 466 (536)
T ss_pred CceEEEEecCccC-CcccccccccCCceeEEcccceeeeccccch
Confidence 8999999999999 6665 66799999999999999987 63
|
|
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=109.40 Aligned_cols=197 Identities=19% Similarity=0.229 Sum_probs=147.1
Q ss_pred cccccccCCCceeccccccceEEEEEEEE-CCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWARTVVTGRARL-GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1954 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a~~vVtG~arl-~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ar 1954 (2267)
|+..||-.+. ++. --..++.|.+.. +|+++.||.+. + +|.++-+.+.+.|+
T Consensus 2 ~l~~Lf~~~~--~~~--~~~~v~~g~~~~~~~~~iaVvg~~---------------~---------~~~vGl~ea~~lA~ 53 (234)
T PF06833_consen 2 WLAALFPDGH--GIP--ASVQVLDGEAGGEDGRFIAVVGDA---------------N---------HGEVGLEEAWALAK 53 (234)
T ss_pred hHHHhcCCCC--CcC--cccceEEeeccccCCcEEEEEecC---------------C---------CCcccHHHHHHHHH
Confidence 6666665521 111 135688888888 88999999872 1 58899999999999
Q ss_pred HHHHhc--ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC---CCEEEEEccCCcCCchhHhhhccccCCc
Q 000092 1955 ALMDFN--REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK---QPVFVYIPMMAELRGGAWVVVDSRINSD 2029 (2267)
Q Consensus 1955 ai~~a~--~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~---vP~i~vI~~~g~~~GGa~vv~~~~~n~d 2029 (2267)
++.+.- ..+.|||.++|++|-..|.++|.-|+-++.|.+..++..++ .|+|..|. |++-+|+|.+.+-. +|
T Consensus 54 ~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~--G~A~SGaFLA~Glq--A~ 129 (234)
T PF06833_consen 54 AVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVY--GKAMSGAFLAHGLQ--AN 129 (234)
T ss_pred HHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEe--cccccHHHHHHHHH--hc
Confidence 998764 47999999999999999999999999999888888877655 79999999 99999999999864 45
Q ss_pred cceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhH
Q 000092 2030 HIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQ 2109 (2267)
Q Consensus 2030 ~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~ 2109 (2267)
. +||.|++.+.||+.+.++.|.-|.-+.++. +. +-.|+|.
T Consensus 130 r--l~AL~ga~i~vM~~~s~ARVTk~~ve~Le~-----------------------------la--------~s~PvfA- 169 (234)
T PF06833_consen 130 R--LIALPGAMIHVMGKPSAARVTKRPVEELEE-----------------------------LA--------KSVPVFA- 169 (234)
T ss_pred c--hhcCCCCeeecCChHHhHHHhhcCHHHHHH-----------------------------Hh--------hcCCCcC-
Confidence 5 899999999999999999886554321111 11 1124332
Q ss_pred HHHHhHhhhCcHHHHHHcCCcccccC---ccchHHHHHHHHHHHHhH
Q 000092 2110 VATKFAELHDTSLRMAAKGVIKEVVD---WDKSRSFFCRRLRRRVAE 2153 (2267)
Q Consensus 2110 ~a~~fadlhdt~~rm~~~G~Id~ii~---~~~~R~~~~~~L~r~l~e 2153 (2267)
| -.......|.|+++++ ....+..+...++..|.+
T Consensus 170 ----~-----gi~ny~~lG~l~~l~~~~~~~~~~~~~~~~v~~~l~~ 207 (234)
T PF06833_consen 170 ----P-----GIENYAKLGALDELWDGDLADQPAEALAAQVQEALAA 207 (234)
T ss_pred ----C-----CHHHHHHhccHHHHhcccccccccHHHHHHHHHHHHh
Confidence 1 2457778899999988 444566666666665544
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=118.98 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeec--CCCCC--cCe
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKAS--WGGGG--KGI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs--~GgGG--kGI 246 (2267)
+.+.+|++++++|||||+|.. +++.+++.++++++| ||+++||. .|+.| -||
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~-----------------------~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV 60 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYV-----------------------ATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGV 60 (386)
T ss_pred cHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceE
Confidence 467889999999999999876 778999999999999 99999998 33322 299
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC
Q 000092 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY 292 (2267)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~~ 292 (2267)
+++.|.+++.++++++.... ++ ..++||+++++++|+.|.++.|..
T Consensus 61 ~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 61 KVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS 117 (386)
T ss_pred EEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence 99999999999998876421 11 369999999978999999999863
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.9e-08 Score=122.02 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=61.7
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||.|++||+++++|+|||+++|.||.+|+|+++ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 13 TEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGN 78 (403)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 359999999999999999999999999999999999999999988 99999999999999998653
|
dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. |
| >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-08 Score=123.86 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=62.6
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
-|+|++|+|++||+|++||+|++||+.|..++|.||.+|+|.++ +++|+.|..|++|+.|+.++.
T Consensus 16 EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 16 EGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred eEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 68999999999999999999999999999999999999999999 999999999999999998754
|
|
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-07 Score=116.36 Aligned_cols=105 Identities=20% Similarity=0.290 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCCCCCc----Ce
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWGGGGK----GI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~GgGGk----GI 246 (2267)
+++.+|++++++|||+|+|.. +++.+|+.++++++ ||||++||....||| ||
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~-----------------------~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV 60 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIV-----------------------ATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGV 60 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCee-----------------------eCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccE
Confidence 578899999999999999876 78999999999999 999999998655555 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEec
Q 000092 247 RKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2267)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~-~G~vi~l~ 299 (2267)
+++.+.+++.++++++.... ++ ..++||+++++++|+.+.+..|. .|.++.++
T Consensus 61 ~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 61 KLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred EEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 99999999999999887542 12 25899999997899999999996 46666543
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=110.20 Aligned_cols=172 Identities=14% Similarity=0.126 Sum_probs=121.0
Q ss_pred eEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHH-H-HcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1588 GMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLA-C-AKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1588 gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA-~-~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+||++..++ +|++|.|++|+..+ .||..++.|..+....+ . +.++|+|.|.|+.|++++..+|..-+.+
T Consensus 21 ~vv~G~arl------~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~ 91 (238)
T TIGR03134 21 GVLVGSAEL------AGGKVTVIGVVPDA---EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQ 91 (238)
T ss_pred cEEEEEEEE------CCEEEEEEEECCCC---cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHH
Confidence 699999988 99999999999866 88888999999888885 3 4899999999999999996655532210
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
..+++-.. +..++. ..+|+
T Consensus 92 ---------------------a~A~l~~a----------------------------~a~a~~------------~~vP~ 110 (238)
T TIGR03134 92 ---------------------ALAHLAKA----------------------------LALARL------------AGHPV 110 (238)
T ss_pred ---------------------HHHHHHHH----------------------------HHHhhc------------CCCCE
Confidence 00110000 000111 13799
Q ss_pred EEEEcCcccchhhhhhcc-CCeEEEecCCcceecchHHHHHhhcccccc-------ccccCCccccccccCceEEEecCc
Q 000092 1746 LTYVTGRTVGIGAYLARL-GMRCIQRLDQPIILTGFSALNKLLGREVYS-------SHMQLGGPKIMATNGVVHLTVSDD 1817 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~l-gd~~I~~~~a~i~ltGp~al~~~lG~evy~-------s~~~lGG~~i~~~nGv~d~~v~dd 1817 (2267)
|++|+|.+.|+|++.-.+ +|++++-+++.+..-+|+.--..+-+++-. .+...-+++...+.|.+|.+.+..
T Consensus 111 IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 111 IGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred EEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCC
Confidence 999999999988777666 999999999999999999887777655410 011123445567899999988633
Q ss_pred HH--HHHHHHHHHh
Q 000092 1818 LE--GISAILKWLS 1829 (2267)
Q Consensus 1818 ~e--~~~~i~~~Ls 1829 (2267)
.. .-+.+...++
T Consensus 191 ~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 191 DADAPAAQLAAVLA 204 (238)
T ss_pred CcccHHHHHHHHHH
Confidence 31 1244544444
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=107.28 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=124.6
Q ss_pred CCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh-CCcEEEeecCC
Q 000092 162 PPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV-GYPAMIKASWG 240 (2267)
Q Consensus 162 Ps~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I-GyPVVIKPs~G 240 (2267)
++.+....+.||..++.++.++|||+|+... .++.+.+......+.+++.+++... ..++++||+.|
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G 83 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIF------------NVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG 83 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEE------------eccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC
Confidence 6678889999999999999999999999432 2333333333467889998888774 68999999999
Q ss_pred CCCcCeEEECCHH------HHHHHHHHHHhhCCCCcEEEEEeccccc-----------eeeEEEEEcCCCCEEEe-----
Q 000092 241 GGGKGIRKVHNDD------EVRALFKQVQGEVPGSPIFIMKVASQSR-----------HLEVQLLCDQYGNVAAL----- 298 (2267)
Q Consensus 241 gGGkGIr~V~s~e------EL~~a~~~~~~e~~~~~I~VEeyI~g~r-----------hieVqvl~D~~G~vi~l----- 298 (2267)
+||+||.+++..+ +....+.... ...+..++||++|.... -+.|-.+.+. |.+..+
T Consensus 84 ~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lR 161 (285)
T PF14397_consen 84 SGGKGILVIDRRDGSEINRDISALYAGLE-SLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLR 161 (285)
T ss_pred CCccCEEEEEeecCcccccchhHHHHHHH-hcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEE
Confidence 9999999987665 2222222222 22222789999996532 2233333343 221110
Q ss_pred -------------------cccc---ccc--ccccceEEEecCCCCC-----CHHHHHHHHHHHHHHHHHcCceeeeEEE
Q 000092 299 -------------------HSRD---CSV--QRRHQKIIEEGPITVA-----PLETVKKLEQAARRLAKCVNYVGAATVE 349 (2267)
Q Consensus 299 -------------------~~Rd---csv--qrr~qKiieeaPa~~l-----~~e~~~eL~~~A~rla~aLGy~Ga~tVE 349 (2267)
..-+ +.. ...+.+.++.-|-+.. .-..++++.+.+.++++.+...+....|
T Consensus 162 lg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWD 241 (285)
T PF14397_consen 162 LGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWD 241 (285)
T ss_pred eCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEE
Confidence 0000 000 0111222333343221 2234789999999999999888999999
Q ss_pred EEEEccCCcEEEeeeCccCc
Q 000092 350 YLYSMETGEYYFLELNPRLQ 369 (2267)
Q Consensus 350 fl~d~~~g~~yfLEINpRlq 369 (2267)
+.+++ +| |.+||.|.|.+
T Consensus 242 vait~-~G-p~llE~N~~~~ 259 (285)
T PF14397_consen 242 VAITE-DG-PVLLEGNARWD 259 (285)
T ss_pred EEEcC-CC-cEEEEeeCCCC
Confidence 99993 45 99999999954
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-08 Score=128.06 Aligned_cols=65 Identities=26% Similarity=0.396 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+.+ +++|+.|..|++|++|+.++
T Consensus 13 ~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~~ 78 (633)
T PRK11854 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESAD 78 (633)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEeccc
Confidence 478999999999999999999999999999999999999999988 99999999999999998763
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-08 Score=128.07 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=62.5
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 4589999999999999999999999999999999999999999998 99999999999999997543
|
|
| >PLN02528 2-oxoisovalerate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-07 Score=117.63 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-|+|++|+|++||.|++||+++++|+|||++++.||.+|+|.++ +++|+.|..|++|+.|+.++
T Consensus 12 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 12 ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 38999999999999999999999999999999999999999988 99999999999999997443
|
|
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-07 Score=121.81 Aligned_cols=65 Identities=28% Similarity=0.443 Sum_probs=61.6
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|+.|+.++
T Consensus 128 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAG 193 (546)
T ss_pred ceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCC
Confidence 458999999999999999999999999999999999999999988 99999999999999998654
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=121.55 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=62.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+...|+|++|+|++||.|++||+|++||+|||.++|.||.+|+|.++ +++|+.|..|++|++|+.++
T Consensus 146 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 213 (590)
T TIGR02927 146 SVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG 213 (590)
T ss_pred CcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 34579999999999999999999999999999999999999999988 99999999999999997543
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-07 Score=119.11 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=63.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
++.+|+|++|+|++||.|++||++++||+|||+++|.|+.+|+|+.+ +++|+.|..|++|++|+.++.
T Consensus 10 ~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~~ 78 (546)
T TIGR01348 10 DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGAG 78 (546)
T ss_pred CCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecccc
Confidence 44789999999999999999999999999999999999999999988 999999999999999986543
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.4e-06 Score=99.32 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=117.3
Q ss_pred HHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCC-C--CCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh
Q 000092 153 STKGIIFLGPPATSMAALGDKIGSSLIAQAANV-P--TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV 229 (2267)
Q Consensus 153 ~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGV-P--tpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I 229 (2267)
++.|+.|+.| ...||+...+.+.+... . .|++.. +++.+++.++.++.
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~-----------------------~~~~~~l~~~L~~y 55 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETEL-----------------------LTSFEDLREMLNKY 55 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceE-----------------------cCCHHHHHHHHHHC
Confidence 3468999977 35899999999998642 2 333322 66788898888876
Q ss_pred CCcEEEeecCCCCCcCeEEEC----------------------CHHHHHHHHHHHHhhCCCCcEEEEEecc----cccee
Q 000092 230 GYPAMIKASWGGGGKGIRKVH----------------------NDDEVRALFKQVQGEVPGSPIFIMKVAS----QSRHL 283 (2267)
Q Consensus 230 GyPVVIKPs~GgGGkGIr~V~----------------------s~eEL~~a~~~~~~e~~~~~I~VEeyI~----g~rhi 283 (2267)
+ -|+|||..|++|+||.+++ +.+++...+.. ......++||+.|+ +++.+
T Consensus 56 ~-~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~yIiQq~I~l~~~~gr~f 131 (262)
T PF14398_consen 56 K-SVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKE---LLGKRRYIIQQGIPLATYDGRPF 131 (262)
T ss_pred C-EEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHH---hcCCCcEEEeCCccccccCCCeE
Confidence 5 4999999999999997653 23445444443 34456899999995 33555
Q ss_pred eEEEEE--cCCCC--EEEecccccccccccceEEEec-------CC-C-----CCCHHHHHHHHHHHHHHHHHc----Cc
Q 000092 284 EVQLLC--DQYGN--VAALHSRDCSVQRRHQKIIEEG-------PI-T-----VAPLETVKKLEQAARRLAKCV----NY 342 (2267)
Q Consensus 284 eVqvl~--D~~G~--vi~l~~Rdcsvqrr~qKiieea-------Pa-~-----~l~~e~~~eL~~~A~rla~aL----Gy 342 (2267)
.+-++. ++.|. +.....|-. ..+ .++..- |. . .-.....++|.+.|..+++++ |.
T Consensus 132 D~RvlvqK~~~G~W~vtg~~~Rva---~~~-~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~ 207 (262)
T PF14398_consen 132 DFRVLVQKNGSGKWQVTGIVARVA---KPG-SIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGG 207 (262)
T ss_pred EEEEEEEECCCCCEEEEEEEEEEc---CCC-CceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555554 55553 333333321 111 111110 00 0 012335667777777777665 65
Q ss_pred -eeeeEEEEEEEccCCcEEEeeeCccCcC
Q 000092 343 -VGAATVEYLYSMETGEYYFLELNPRLQV 370 (2267)
Q Consensus 343 -~Ga~tVEfl~d~~~g~~yfLEINpRlqg 370 (2267)
-|-..+|+-+| .+|+++|||+|++++-
T Consensus 208 ~~gElGiDl~iD-~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 208 HLGELGIDLGID-KNGKIWLIEVNSKPGK 235 (262)
T ss_pred ceeEEEEEEEEc-CCCCEEEEEEeCCCCc
Confidence 57889999999 5899999999999874
|
|
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.9e-07 Score=117.27 Aligned_cols=64 Identities=25% Similarity=0.466 Sum_probs=61.0
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++ +++|+.|..|++|++|+.+
T Consensus 131 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 131 TEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred ceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999888 9999999999999999754
|
|
| >cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=81.09 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=60.9
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
-+++-.|++.+|.+..|+.|.+|++++.+|+|||.+++.+|.+|+|... +.+|+.+..|++|++|
T Consensus 9 ~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 9 GESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3478889999999999999999999999999999999999999999877 9999999999999874
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. |
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=112.90 Aligned_cols=65 Identities=28% Similarity=0.525 Sum_probs=61.3
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|+|++|+|++||+|++||++++||+|||+++|.||.+|+|..+ +++|+.|..|++|+.|+.++
T Consensus 14 ~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 469999999999999999999999999999999999999999988 99999999999999997543
|
|
| >PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-06 Score=107.82 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=62.2
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-..|+|++|+|++||.|++||+++++|+|||.+++.||.+|+|..+ +++|+.|..|++|++|+.++
T Consensus 14 ~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 14 MTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 4579999999999999999999999999999999999999999888 99999999999999997544
|
|
| >TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=108.06 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCc-cCCCCEEEEEecC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQA-MQAGELIARLDLD 757 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~-v~~G~~La~l~~~ 757 (2267)
-..|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+. |..|++|++|+.+
T Consensus 11 ~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 11 MTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred cceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 3568999999999999999999999999999999999999999988 999999 9999999999754
|
This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. |
| >KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-06 Score=102.01 Aligned_cols=62 Identities=27% Similarity=0.460 Sum_probs=59.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
-|.|-.|+.++||+|++++.+++||+.|...+|.||.+|+|+.+ +++|++|++|+.|+.|++
T Consensus 86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 47777899999999999999999999999999999999999988 999999999999999987
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.7e-06 Score=107.26 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=60.5
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
--|+|.+|+|++||.|++||++++||+|||.+++.||.+|+|.++ +++|+ .|..|++|++|+.+.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 15 EEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred ceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 358999999999999999999999999999999999999999988 99995 799999999997543
|
|
| >PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
|---|
Probab=98.05 E-value=7e-06 Score=106.56 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=59.1
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEec
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDL 756 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~ 756 (2267)
.-|+|++|+|++||.|++||++++||++|..+++.||.+|+|.++ +++|+ .|..|++|+++..
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 358999999999999999999999999999999999999999988 99996 8999999998853
|
|
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=107.14 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=62.0
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
+...|+|++|+|++||.|++||++++||+|||.+++.||.+|+|..+ +++|+.|..|++|++|+..
T Consensus 13 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 13 SVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 44578999999999999999999999999999999999999999988 9999999999999999753
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=79.99 Aligned_cols=109 Identities=21% Similarity=0.365 Sum_probs=69.7
Q ss_pred eeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCce----------------------------
Q 000092 607 QVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNS---------------------------- 658 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s---------------------------- 658 (2267)
.+.+++||..|.+++.+.+...|.+++||+.|+|++..+.... ..++..
T Consensus 3 ~~~~~~~g~~~~v~v~~~~~~~~~itvnG~~y~V~vee~~~~~---~~~~~~~~~~~~~~~p~~~~~p~~~~~p~~~~~~ 79 (153)
T PRK05641 3 KVKVIVDGVEYEVEVEELGPGKFRVSFEGKTYEVEAKGLGIDL---SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAP 79 (153)
T ss_pred eEEEEECCEEEEEEEEeecCccEEEEECCEEEEEEEEEccccc---ccccccccccccccCcccccCcccccccCccccC
Confidence 4678999999999999999889999999999999997754211 000100
Q ss_pred -----EEEEeeecccceEEEE-cCc-------eeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 659 -----HVVYAEEEAAGTRLLI-DGR-------TCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 659 -----~~v~~~e~~~~~~v~v-~g~-------t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
..+...-...-..+.+ .|. -+.++...-...|.||..|+|.++++++||.|+.||+|+.|
T Consensus 80 ~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 80 ASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 0000000000000111 011 11111222235799999999999999999999999999986
|
|
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00028 Score=89.85 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCC----cCeE
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGG----KGIR 247 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGG----kGIr 247 (2267)
-+.+|.++.++|||+|++.. +++++|+.+.++++||| +++|+..-.|| -||+
T Consensus 5 E~eak~lL~~yGIpvp~~~~-----------------------~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~ 61 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGAL-----------------------AYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIK 61 (392)
T ss_pred HHHHHHHHHHcCCCCCCceE-----------------------ECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEE
Confidence 35678999999999999876 78999999999999995 59998432323 3689
Q ss_pred EECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcC-CCCEEEec
Q 000092 248 KVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQ-YGNVAALH 299 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~-~G~vi~l~ 299 (2267)
+..|++++.++++++.... .+ ..++||+.++..+|+-+.+..|. .|.++.++
T Consensus 62 l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 62 LCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred EECCHHHHHHHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 9999999999999887642 11 35899999998899999999986 46666653
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.4e-05 Score=88.45 Aligned_cols=106 Identities=25% Similarity=0.407 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCC-----CCcCe
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-----GGKGI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-----GGkGI 246 (2267)
+-..++.++..+|||+|+|.. +++.+++.++++.+||||++|...-. ---||
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~-----------------------~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV 67 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRL-----------------------VTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGV 67 (222)
T ss_dssp -HHHHHHHHHTTT------EE-----------------------ESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-E
T ss_pred CHHHHHHHHHHcCcCCCCeeE-----------------------eCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcE
Confidence 456789999999999999876 88999999999999999999998643 12267
Q ss_pred EE-ECCHHHHHHHHHHHHhhC----C---CCcEEEEEecc-ccceeeEEEEEcC-CCCEEEecc
Q 000092 247 RK-VHNDDEVRALFKQVQGEV----P---GSPIFIMKVAS-QSRHLEVQLLCDQ-YGNVAALHS 300 (2267)
Q Consensus 247 r~-V~s~eEL~~a~~~~~~e~----~---~~~I~VEeyI~-g~rhieVqvl~D~-~G~vi~l~~ 300 (2267)
+. +.+++++.++|+++.... + ...++||+.++ ++.|+.|-+..|. .|.++.++.
T Consensus 68 ~L~l~~~~~v~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 68 RLNLNSPEEVREAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp EEEE-SHHHHHHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 77 899999999999887653 2 25799999998 7799999999986 577776543
|
|
| >KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.3e-05 Score=94.25 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCC-CccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEG-QAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G-~~v~~G~~La~l~~~~ 758 (2267)
-|+|++|..++||.+++||.|+|||+.|-.|++.++.+|.+.+| +.+| ..|..|.+||.|..++
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEeccc
Confidence 49999999999999999999999999999999999999999988 9999 8999999999986544
|
|
| >PRK13380 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.8e-05 Score=84.37 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=47.8
Q ss_pred CceecCCCceeEEEEcc-CCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 688 SKLVAETPCKLLRYLVS-DGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~-~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
+...+.+.|+|+.+.+. +|++|++||++++||+|||+.+|.||.+|+|..+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v 87 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV 87 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence 45778999999999987 8999999999999999999999999999999887
|
|
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=82.60 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCc----CeE
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GIR 247 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GIr 247 (2267)
-+.++++++++|||+|++.. +++++|+.++++.+|.| +|+||---.||| ||.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~-----------------------a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk 60 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVV-----------------------ATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVK 60 (202)
T ss_dssp HHHHHHHHHCTT----SEEE-----------------------ESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCeee-----------------------cCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCcee
Confidence 36789999999999999765 78999999999999985 799997766665 589
Q ss_pred EECCHHHHHHHHHHHHhhCC--------C---CcEEEEEeccccceeeEEEEEcCCCCE
Q 000092 248 KVHNDDEVRALFKQVQGEVP--------G---SPIFIMKVASQSRHLEVQLLCDQYGNV 295 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~--------~---~~I~VEeyI~g~rhieVqvl~D~~G~v 295 (2267)
+++|++|+.+..++..+..- | ..++||++++-.+|+=+.+..|.....
T Consensus 61 ~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~ 119 (202)
T PF08442_consen 61 IAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRG 119 (202)
T ss_dssp EESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTE
T ss_pred ecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCc
Confidence 99999999999888764311 1 367999999988999999888875443
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00054 Score=87.52 Aligned_cols=101 Identities=16% Similarity=0.281 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh---CCcEEEeecC--CCCC---
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV---GYPAMIKASW--GGGG--- 243 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I---GyPVVIKPs~--GgGG--- 243 (2267)
.-+.++++++++|||+|++.. +.+++|+.+.++++ ++|+|+|+.- ||=|
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~v-----------------------a~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~ 87 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAA-----------------------ASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGT 87 (422)
T ss_pred CHHHHHHHHHHcCCCCCCcee-----------------------eCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccc
Confidence 467889999999999999776 78999999999999 6999999994 4433
Q ss_pred ------cCeEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC--CCEE
Q 000092 244 ------KGIRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY--GNVA 296 (2267)
Q Consensus 244 ------kGIr~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~~--G~vi 296 (2267)
-||+++++ +++.+++++..... .+ ..++|++.+...+|+-+.+..|.. |.++
T Consensus 88 hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 88 FKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred cccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 33667766 99999999887541 11 247777777777899999999962 4455
|
|
| >PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.3e-05 Score=81.81 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=47.3
Q ss_pred cccccccCCCceecccccc----ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHH
Q 000092 1876 WIGGIFDKDSFVETLEGWA----RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1951 (2267)
Q Consensus 1876 ~~~gl~D~gSF~E~~~~~a----~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K 1951 (2267)
++..+|| .|+|+.++-. +++|+|+|+++|+||.||+.+.+ .+..|+...+ +|+..|.+++|
T Consensus 72 yI~~l~~--df~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG------------~~~~e~~~rN-FGm~~PeGYRK 136 (145)
T PF03255_consen 72 YIENLFD--DFIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKG------------RDTKENIKRN-FGMPHPEGYRK 136 (145)
T ss_dssp HHHHH-E--EEEE----SSS---TTEEEEEEEETTEEEEEEEE---------------SSCCHHHHTG-GG---HHHHHH
T ss_pred HHHHHhC--cCeEecCCccCCcCccceeeeEEECCEEEEEEEEecC------------cCHHHHHHHc-CCCCCcchHHH
Confidence 3344787 5999987643 89999999999999999999865 3444555555 58999999999
Q ss_pred HHHHHHHhc
Q 000092 1952 TAQALMDFN 1960 (2267)
Q Consensus 1952 ~arai~~a~ 1960 (2267)
+.|.++.|+
T Consensus 137 AlRlmk~Ae 145 (145)
T PF03255_consen 137 ALRLMKQAE 145 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999874
|
4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.013 Score=77.58 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=119.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC--Ccce--------ec-chHHHHHh-----hccc----cccccccCCcc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD--QPII--------LT-GFSALNKL-----LGRE----VYSSHMQLGGP 1801 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~--a~i~--------lt-Gp~al~~~-----lG~e----vy~s~~~lGG~ 1801 (2267)
..|+|+.|.|.|+|+|..++-.||++|+.++ +.+. ++ |......+ +|.. ...+.+.+.+.
T Consensus 123 pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~Ae 202 (550)
T PRK08184 123 GLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGK 202 (550)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHH
Confidence 4699999999999999999999999999976 3322 22 11112222 2221 11122333333
Q ss_pred ccccccCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccCCC-CCCChHHHhcccccCCCCccccc
Q 000092 1802 KIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNNGKWIGGI 1880 (2267)
Q Consensus 1802 ~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~-~~yD~R~~i~~~~~~~~~~~~gl 1880 (2267)
+ ...-|++|.++++| +..+.+.+|..-+-.+...+. ++.-+.+.|- +..| .+ |+
T Consensus 203 e-A~~~GLVd~vv~~d-~l~~~a~~~A~~ia~~~~~~~--------~~~~~~~~~~~~~~~----------~~-----~~ 257 (550)
T PRK08184 203 R-AVDWRLVDEVVKPS-KFDAKVAERAAELAAASDRPA--------DAKGVALTPLERTID----------AD-----GL 257 (550)
T ss_pred H-HHHcCCccEeeCHH-HHHHHHHHHHHHHHhCCCCCC--------CCCcccccccccccc----------CC-----ce
Confidence 3 34689999999754 444445444332211111111 1222333332 1111 11 12
Q ss_pred ccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhc
Q 000092 1881 FDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFN 1960 (2267)
Q Consensus 1881 ~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~ 1960 (2267)
..+. +..-. ...|. |+.|..+.- +..|+-+..-++......|.+.-......+++.+.
T Consensus 258 ~~~~------------~~v~~-~~~~~-va~itlnrP--------~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~ 315 (550)
T PRK08184 258 RYRH------------VDVEI-DRAAR-TATITVKAP--------TAAQPADIAGIVAAGAAWWPLQMARELDDAILHLR 315 (550)
T ss_pred eeEE------------EEEEE-EccCC-EEEEEEeCc--------ccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 2211 11111 12232 444443210 00010000001111125788999999999999886
Q ss_pred c--cCCcEEEEecCC--CCCCchh--hhh-------hchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h-hHhhhcc
Q 000092 1961 R--EELPLFILANWR--GFSGGQR--DLF-------EGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G-AWVVVDS 2024 (2267)
Q Consensus 1961 ~--~~lPLv~l~d~~--Gf~~G~~--~e~-------~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G-a~vv~~~ 2024 (2267)
. ..+-.|+|.-.+ .|..|.. ... .........++..+..+.+|+|+.|-+ |.+.| | .-+++++
T Consensus 316 ~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~-G~a~GgG~~eLalac 393 (550)
T PRK08184 316 TNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP-GSCFAGTLAELALAA 393 (550)
T ss_pred hcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC-CceehhHHHHHHHHC
Confidence 3 567778887654 3776654 110 112233445677888999999999932 55555 4 4444443
|
|
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0007 Score=77.98 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEcc--CCcCCch
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM--MAELRGG 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~--~g~~~GG 2017 (2267)
.|.+.+..+..+.+.++.+...+ -+|++..|+|| |....+-.+.+++..++.|+|++|.| |-.+.||
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpG----------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG 76 (187)
T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPG----------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAG 76 (187)
T ss_pred eeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCC----------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHH
Confidence 36777888899999999887766 44677779999 44555667788888899999999976 4445557
Q ss_pred hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|+++++ |. ++|.|+|++|..+|-
T Consensus 77 ~~iala~----D~--iva~p~a~~g~~~~~ 100 (187)
T cd07020 77 TYILLAA----HI--AAMAPGTNIGAAHPV 100 (187)
T ss_pred HHHHHhC----Cc--eeECCCCcEEecccc
Confidence 7777765 76 899999999998875
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.01 Score=78.49 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=67.0
Q ss_pred cccccCCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCC-C-CCCchhh--hh-------hchHHHHHHHHHHHhcCC
Q 000092 1935 RVVPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWR-G-FSGGQRD--LF-------EGILQAGSTIVENLRTYK 2001 (2267)
Q Consensus 1935 ~~~~~~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~-G-f~~G~~~--e~-------~gilk~ga~iv~al~~~~ 2001 (2267)
.++.|..-.|.++-......++..+.+ ..+-+|+|.-.+ . |+.|..- +. ...+.+..+++..+..+.
T Consensus 286 ~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 365 (546)
T TIGR03222 286 AIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSS 365 (546)
T ss_pred cccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCC
Confidence 345555678999999999999998863 677778776643 2 6665432 10 112223345778899999
Q ss_pred CCEEEEE-ccCCcCCchh--HhhhccccCCccceeec-------ccccEEEee
Q 000092 2002 QPVFVYI-PMMAELRGGA--WVVVDSRINSDHIEMYA-------DRTAKGNVL 2044 (2267)
Q Consensus 2002 vP~i~vI-~~~g~~~GGa--~vv~~~~~n~d~~~~~A-------~p~A~~gvl 2044 (2267)
+|+|+.| - |.+.||+ -.+++ +|+ +|| .++++++.-
T Consensus 366 kpviAav~~--G~a~GgG~~eLala----cD~--~ia~~~~~~~~~~a~f~~~ 410 (546)
T TIGR03222 366 RSLFALIEP--GSCFAGTLAELAFA----ADR--SYMLAFPDNNDPEPAITLS 410 (546)
T ss_pred CCEEEEECC--CeEeHHHHHHHHHh----Cce--eeecCCCCCCCCCCEEeCC
Confidence 9999999 7 5556655 33444 366 677 666766553
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0017 Score=82.16 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHc-----CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhh---hCCc-EEEeecCCCCCc
Q 000092 174 IGSSLIAQAA-----NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV---VGYP-AMIKASWGGGGK 244 (2267)
Q Consensus 174 ~~~k~laq~a-----GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~---IGyP-VVIKPs~GgGGk 244 (2267)
+.+|+++.++ |||+|.... ++++.+|+.+++++ +|.| +||||---.|||
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v----------------------~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgR 66 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSA----------------------QVTESTDFNELANKEPWLSSTKLVVKPDMLFGKR 66 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCee----------------------ccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCC
Confidence 4567888887 999998654 24899999999988 8875 599998877776
Q ss_pred C----eEEECCHHHHHHHHHHHHhhC------CC--CcEEEEEeccccceeeEEEEEcCCCCEE
Q 000092 245 G----IRKVHNDDEVRALFKQVQGEV------PG--SPIFIMKVASQSRHLEVQLLCDQYGNVA 296 (2267)
Q Consensus 245 G----Ir~V~s~eEL~~a~~~~~~e~------~~--~~I~VEeyI~g~rhieVqvl~D~~G~vi 296 (2267)
| |.+++|++|+.++.++..... .| ..++||++++-.+|+=+.++.|.....+
T Consensus 67 GKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~i 130 (423)
T PLN02235 67 GKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSI 130 (423)
T ss_pred cccCceEEeCCHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEE
Confidence 5 899999999999999877543 11 2579999998889999999988876653
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0026 Score=72.33 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=72.4
Q ss_pred CccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEc-cCCcCCc-hh
Q 000092 1942 QVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIP-MMAELRG-GA 2018 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~-~~g~~~G-Ga 2018 (2267)
|.+.+..+.-..|.++.|.+.+ -+|++..|||| |.+..+-.|.+++...++|+++++. +||.+.+ |+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPG----------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCC----------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHH
Confidence 6788888888999999987754 57999999999 5566677889999999999999995 4444444 56
Q ss_pred HhhhccccCCccceeecccccEEEeeCccc
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
|++++. |. .+|.|++++|..+|-+
T Consensus 78 ~I~~a~----~~--i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 78 YIALGS----HL--IAMAPGTSIGACRPIL 101 (172)
T ss_pred HHHHhc----Cc--eEECCCCEEEEccccc
Confidence 666654 55 8999999999999953
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd06848 GCS_H Glycine cleavage H-protein | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00026 Score=72.94 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=45.0
Q ss_pred eecCCCceeEEEE-ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCC
Q 000092 690 LVAETPCKLLRYL-VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAE 741 (2267)
Q Consensus 690 l~APmPG~vv~~~-V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~ 741 (2267)
....+.|+|+.+. +++|++|++||++++||+||+..+|.||.+|+|..+ .+.
T Consensus 23 ~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l 76 (96)
T cd06848 23 YAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEAL 76 (96)
T ss_pred HHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhh
Confidence 4567799999955 455999999999999999999999999999999877 443
|
Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. |
| >TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00037 Score=86.88 Aligned_cols=34 Identities=6% Similarity=0.129 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.||.+|+|.+++|++||+|++||+|++|+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3458999999999999999999999999999975
|
|
| >PRK01202 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00067 Score=73.38 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=58.4
Q ss_pred ceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCCC
Q 000092 689 KLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDDP 759 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~~ 759 (2267)
.......|+|+.+.. +.|++|++||+++.||+||...+|.||.+|+|..+ ....+.|+ .|+ -|++|.+.++
T Consensus 30 ~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~ 109 (127)
T PRK01202 30 DHAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE 109 (127)
T ss_pred HHHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence 355678899988764 56999999999999999999999999999999877 34456666 565 8999987764
|
|
| >PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00059 Score=87.62 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=63.1
Q ss_pred CCceecCCCceeEEEE-ccCCCEEcCCCcEEEEEc-------------c-------------------------------
Q 000092 687 PSKLVAETPCKLLRYL-VSDGSHIDADTPYAEVEV-------------M------------------------------- 721 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~-V~~Gd~V~~G~~l~~iEa-------------M------------------------------- 721 (2267)
...|.|+.+|.|.+++ +++||+|++||+|++|++ .
T Consensus 123 ~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~ 202 (409)
T PRK09783 123 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 202 (409)
T ss_pred eEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4579999999999998 999999999999999982 0
Q ss_pred ----ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 722 ----KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 722 ----KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.-...|+||.+|+|... +.+|+.|.+|++|++|...+.
T Consensus 203 ~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 203 TRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred cCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 01357999999999988 999999999999999975543
|
|
| >TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00042 Score=72.97 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=41.6
Q ss_pred cCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 692 APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.-+-|+|+.+.+ ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 26 q~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v 73 (110)
T TIGR03077 26 QENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV 73 (110)
T ss_pred HHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 445677877766 56999999999999999999999999999999887
|
The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0021 Score=73.45 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=73.6
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhH
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAW 2019 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~ 2019 (2267)
.|.+.+..+.-..|+++.|.+.+ -.|++..|+|| |.+..+-.|...+..+++|++++|. +....+|+|
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspG----------G~v~~~~~I~~~l~~~~~pvva~V~-g~AaSaG~~ 75 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPG----------GRVDSALEIVDLILNSPIPTIAYVN-DRAASAGAL 75 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------CCHHHHHHHHHHHHhCCCCEEEEEC-CchHHHHHH
Confidence 37888888999999999998775 46888899999 5666777889999999999999997 333444777
Q ss_pred hhhccccCCccceeecccccEEEeeCcc
Q 000092 2020 VVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2020 vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+++++ |+ ++|.|++.+|..+|=
T Consensus 76 ia~a~----d~--i~m~p~a~iG~~~~v 97 (178)
T cd07021 76 IALAA----DE--IYMAPGATIGAAEPI 97 (178)
T ss_pred HHHhC----Ce--EEECCCCeEecCeeE
Confidence 77764 66 899999999998884
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00053 Score=86.17 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.++++|.|.+++|++||+|++||+|+.|+.
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 4568999999999999999999999999999986
|
|
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=79.01 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCc----CeEE
Q 000092 174 IGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIRK 248 (2267)
Q Consensus 174 ~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr~ 248 (2267)
+.+|+++.++|||+|+... +.+++++.++++++| .|+|+|+---.||| ||++
T Consensus 6 YqaKelf~~~GiPvp~g~v-----------------------~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~ 62 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYV-----------------------ATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKL 62 (387)
T ss_pred HHHHHHHHHcCCCCCCcee-----------------------eeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEE
Confidence 5788999999999999655 789999999999998 89999997654444 6999
Q ss_pred ECCHHHHHHHHHHHHh----hCC-C---CcEEEEEecc-ccceeeEEEEEcCCCCEEEe
Q 000092 249 VHNDDEVRALFKQVQG----EVP-G---SPIFIMKVAS-QSRHLEVQLLCDQYGNVAAL 298 (2267)
Q Consensus 249 V~s~eEL~~a~~~~~~----e~~-~---~~I~VEeyI~-g~rhieVqvl~D~~G~vi~l 298 (2267)
+.|.+|..++.+.... ... + ..++||+.++ -.+|+=+.++.|.....+.+
T Consensus 63 ~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 63 AKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred eCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 9999999999998876 222 2 3689999998 43499999888876655443
|
|
| >TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=76.91 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCCCccccCC
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPSAVRKAE 766 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~~~~v~~~~ 766 (2267)
...|+||.+|.+-. .++-||.|+|||+|+.|+. .+|+||.+|+|.-+++.|..|.+|--|+.|+|-.. ++.
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGlirdG~~V~~G~Ki~dIDPR~~----~~~ 234 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLIHEGLTVTEGLKIGDVDPRGE----KAD 234 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEecCCCCcCCCCEEEEECCCCC----ccc
Confidence 45799999996655 9999999999999999985 89999999999999999999999999999977642 222
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 000092 767 PFYGSFPILGPPTAISGKVHQRCAASLNAA 796 (2267)
Q Consensus 767 ~f~g~~p~~~~p~~~~~~~~~~~~~~~~~l 796 (2267)
.|+ .+.|.+......++.+
T Consensus 235 ~~~-----------isdkar~Iag~VLeAi 253 (256)
T TIGR03309 235 CTT-----------ISDKARAIGGGVLEAI 253 (256)
T ss_pred ccc-----------cCHHHHHHHHHHHHHH
Confidence 332 4566666655544443
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins. |
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00075 Score=76.61 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH-HHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND-DEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 216 V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~-eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
..+.+++.++.++.+. +|+||..|.||+||.++... ..+...++.+.... ..++++|+|++.-+
T Consensus 18 s~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~-~~~~mvQ~flp~i~ 82 (173)
T PF02955_consen 18 SRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNG-ERPVMVQPFLPEIK 82 (173)
T ss_dssp ES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTT-TS-EEEEE--GGGG
T ss_pred ECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcC-CccEEEEecccccc
Confidence 4578999999999998 99999999999999999874 45666555554332 35899999997644
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >TIGR01730 RND_mfp RND family efflux transporter, MFP subunit | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00093 Score=82.42 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=62.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc--------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2267)
...|.||.+|+|.+++|++||+|++||+|+.++.=-
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 356999999999999999999999999999997410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 723 ---------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
-.+.|+||.+|+|..+ +++|+.+.+|++|++|...+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 0246999999999988 99999999999999987544
|
This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. |
| >PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=71.87 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=60.6
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|++.||+.+.+|..||++.+- . +|.|| +| +|..|.+.+ ||+|+
T Consensus 56 ~~V~~aRhp~Rp~~~dyI~~l~----------------~-----df~El-----hG---------DR~~~dD~A-ivgG~ 99 (145)
T PF03255_consen 56 QRVQLARHPDRPTALDYIENLF----------------D-----DFIEL-----HG---------DRLFGDDPA-IVGGI 99 (145)
T ss_dssp HHHHHHTBTTS--HHHHHHHH-----------------E-----EEEE------------------SSS---TT-EEEEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHh----------------C-----cCeEe-----cC---------CccCCcCcc-ceeee
Confidence 3789999999999999999881 2 79998 88 888888777 99999
Q ss_pred EEecCccccCCcEEEEEEecc--------cccCCCcchHHHHHHHHHHHHHH
Q 000092 1594 MEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLAC 1637 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~--------T~~~GS~g~~~~~k~~ra~elA~ 1637 (2267)
+++ +|++|+||+++= -...|+..|.+.+|-.|++++|.
T Consensus 100 a~~------~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 100 ARF------DGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp EEE------TTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred EEE------CCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 987 999999999954 67899999999999999999984
|
4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: |
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0076 Score=72.13 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=106.3
Q ss_pred HHHHhcCHHHHHHHHHHcC--CCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCC
Q 000092 166 SMAALGDKIGSSLIAQAAN--VPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGG 243 (2267)
Q Consensus 166 am~~lgDK~~~k~laq~aG--VPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGG 243 (2267)
.+..|.||...|...++.+ ...||..+ ..++++++.- ..+.-++||||..|+|+
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~----------------------v~~~~~~i~~--~~Lp~~fViK~nhgsg~ 69 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLG----------------------VYDNPDDIDF--DSLPDKFVIKPNHGSGS 69 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceee----------------------cCCChhhhhh--hcCCCCEEEEEecCCCc
Confidence 3567899999999999986 34555443 1334444422 34556899999999999
Q ss_pred cCeEEECCHHHHHHHHHHHH---h--------hCC----CCcEEEEEeccccc-----eeeEEEEE----------cCCC
Q 000092 244 KGIRKVHNDDEVRALFKQVQ---G--------EVP----GSPIFIMKVASQSR-----HLEVQLLC----------DQYG 293 (2267)
Q Consensus 244 kGIr~V~s~eEL~~a~~~~~---~--------e~~----~~~I~VEeyI~g~r-----hieVqvl~----------D~~G 293 (2267)
.+|....+.-+...+...+. . |.. ...|++|+++.... .+-+-++. |..+
T Consensus 70 ~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~ 149 (239)
T PF14305_consen 70 NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFG 149 (239)
T ss_pred EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCC
Confidence 88887665444333332221 1 110 24799999996532 23333332 1111
Q ss_pred -CEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 294 -NVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 294 -~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
....++.+|.....-..+. . .+.....|+..++|.+.|.+|++.+.| +.|||... ++++||=|+-..+++.
T Consensus 150 ~~~~~~yd~dw~~l~~~~~~-~-~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~--~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 150 NHKRNFYDRDWNRLPFRSDY-P-PDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNV--DGKIYFGELTFTPGAG 221 (239)
T ss_pred CeEEEEECcccCCCccccCC-C-CCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEe--CCcEEEEeeecCCCCc
Confidence 1122222221111000000 0 222334577889999999999999776 59999887 8899999999988765
|
|
| >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00096 Score=82.72 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=60.6
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEccc-----------------------------------------------
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK----------------------------------------------- 722 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK----------------------------------------------- 722 (2267)
|.++.+|+|.++.|++||+|++||+|+.|+.=.
T Consensus 50 i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~ 129 (310)
T PRK10559 50 IAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANN 129 (310)
T ss_pred EccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 888999999999999999999999999998610
Q ss_pred -----------------------cceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 723 -----------------------MCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 723 -----------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
=...|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 130 ~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 130 VLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCC
Confidence 0257999999999988 99999999999999886544
|
|
| >KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00058 Score=81.40 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=59.1
Q ss_pred eeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 697 KLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 697 ~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+|.+|.|++||.|+.=|+++++.+.|...+|++-.+|+|+++ .++++....|++|..++.++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 588999999999999999999999999999999999999999 99999999999999998644
|
|
| >PRK03598 putative efflux pump membrane fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=81.86 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.||++|.|.+++|++||.|++||+|+.|+.
T Consensus 44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 358999999999999999999999999999974
|
|
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00078 Score=61.22 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=32.2
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMC 724 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~ 724 (2267)
..|.||++|+|.+++|++||+|++||+|++|+.-...
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 3588999999999999999999999999999875443
|
|
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0027 Score=78.01 Aligned_cols=178 Identities=14% Similarity=0.253 Sum_probs=101.8
Q ss_pred CCeEeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhh
Q 000092 156 GIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQV 228 (2267)
Q Consensus 156 GI~fiGPs~eam~~lgDK~~~k~laq~a-------GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~ 228 (2267)
.+.++ -++++++.+.|...|.+++++. +|.+|++.. |.. . ..+..+.. ..+.
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~-------------i~~-----~-~~~~~~~l-~~ag 136 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVV-------------INS-----D-AESLPELL-KEAG 136 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEE-------------ESS-----S-HCCHHHHH-HCTT
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEE-------------EcC-----C-HHHHHHHH-HHCC
Confidence 56565 6789999999999999999886 344444322 110 0 12222221 1346
Q ss_pred hCCcEEEeecCCCC---CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc-ceeeEEEEEcCCCCEEEecccccc
Q 000092 229 VGYPAMIKASWGGG---GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS-RHLEVQLLCDQYGNVAALHSRDCS 304 (2267)
Q Consensus 229 IGyPVVIKPs~GgG---GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~-rhieVqvl~D~~G~vi~l~~Rdcs 304 (2267)
+.||+|+||....| +..|.++.+.+.|.+. ..|+++|+|+..+ .-+-|-+++|. +.+..|...
T Consensus 137 L~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L---------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~SL 203 (307)
T PF05770_consen 137 LKFPLICKPLVACGSADSHKMAIVFNEEGLKDL---------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRPSL 203 (307)
T ss_dssp S-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEETTE----EEEEEEE--
T ss_pred CcccEEeeehhhcCCccceEEEEEECHHHHhhc---------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECCCC
Confidence 88999999988654 5678999999998753 3599999999643 45666666553 222222110
Q ss_pred ----c---ccc-----cceEE-----------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccC-CcEE
Q 000092 305 ----V---QRR-----HQKII-----------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMET-GEYY 360 (2267)
Q Consensus 305 ----v---qrr-----~qKii-----------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~-g~~y 360 (2267)
. .+. .+.+- ...+.. ....-.+.+.+.|..+-+++|+ ..+++|++.+..+ |++|
T Consensus 204 pn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~ 281 (307)
T PF05770_consen 204 PNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYY 281 (307)
T ss_dssp ----SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEE
T ss_pred CCCCcccccccccceeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEE
Confidence 0 000 00000 000111 1111245688899999999998 5777999998777 7899
Q ss_pred EeeeCccCc
Q 000092 361 FLELNPRLQ 369 (2267)
Q Consensus 361 fLEINpRlq 369 (2267)
++.||-=++
T Consensus 282 VIDINyFPg 290 (307)
T PF05770_consen 282 VIDINYFPG 290 (307)
T ss_dssp EEEEEES--
T ss_pred EEEeccCCC
Confidence 999999776
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PRK15136 multidrug efflux system protein EmrA; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=82.66 Aligned_cols=33 Identities=0% Similarity=0.147 Sum_probs=30.5
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.++.+|+|.+++|++||.|++||+|++|+.
T Consensus 62 v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 358899999999999999999999999999974
|
|
| >PRK00624 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0015 Score=69.24 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=51.5
Q ss_pred ecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe---e-CCCCccCC---CC-EEEEEecCCCC
Q 000092 691 VAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---M-AEGQAMQA---GE-LIARLDLDDPS 760 (2267)
Q Consensus 691 ~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i---~-~~G~~v~~---G~-~La~l~~~~~~ 760 (2267)
-.-+-|.|+.+.. +.|++|++||++++||+||+..+|.||.+|+|..+ + ..-+.++. |+ =|++|.++++.
T Consensus 27 a~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~~ 105 (114)
T PRK00624 27 MQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDEDF 105 (114)
T ss_pred HHHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECChh
Confidence 3455677887766 55999999999999999999999999999999877 2 11222222 22 57777766553
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.018 Score=67.26 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
-+|.+.+..+....+.+...+. ..-|+.+..|++| |-...|-.|.+++...+.|+.+++. |.+.|
T Consensus 36 i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaS~ 103 (200)
T PRK00277 36 LGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPDVSTICI--GQAASM 103 (200)
T ss_pred ECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCEEEEEE--eEeccH
Confidence 3678888888887777766654 3579999999999 4455677899999999999999997 66666
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|++++++. +.+. .++.|+|++++-.|.+.
T Consensus 104 a~~I~~ag--~~~~--r~~~p~s~imih~p~~~ 132 (200)
T PRK00277 104 GAFLLAAG--AKGK--RFALPNSRIMIHQPLGG 132 (200)
T ss_pred HHHHHhcC--CCCC--EEEcCCceEEeccCccc
Confidence 55555553 2233 78999999999888653
|
|
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=66.05 Aligned_cols=89 Identities=19% Similarity=0.110 Sum_probs=68.1
Q ss_pred CccCH---HHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-
Q 000092 1942 QVWFP---DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG- 2017 (2267)
Q Consensus 1942 G~~~p---~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG- 2017 (2267)
|.+.. .++....+.++.+... -|+++..|+|| |....+-.+.+.+..++.|+++++. |.+.|+
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspG----------G~~~~~~~i~~~i~~~~~pvi~~v~--g~a~s~g 73 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPG----------GDVFAGLAIYNALKRHKGKVTVKID--GLAASAA 73 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc--chHHhHH
Confidence 44444 5777888888887655 89999999999 3455677889999999999999997 655554
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
++++++. |. .+|.|++++++-.|.+.
T Consensus 74 ~~ia~a~----d~--~~~~~~a~~~~~~~~~~ 99 (160)
T cd07016 74 SVIAMAG----DE--VEMPPNAMLMIHNPSTG 99 (160)
T ss_pred HHHHhcC----Ce--EEECCCcEEEEECCccc
Confidence 4545443 65 89999999999877654
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.013 Score=65.54 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchh
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2018 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa 2018 (2267)
.|.+.+.+.....+.++.+... -.+|++-.|++|. ....+..+.+++..++.|+++++. |.+.|++
T Consensus 5 ~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg----------~~~~~~~i~~~l~~~~kpvva~~~--g~~~s~g 72 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGG----------RVDAGMNIVDALQASRKPVIAYVG--GQAASAG 72 (161)
T ss_pred EeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCc----------CHHHHHHHHHHHHHhCCCEEEEEC--ChhHHHH
Confidence 4777788888899999888663 3567777898872 233456677888888999999997 5556655
Q ss_pred HhhhccccCCccceeecccccEEEeeCccc
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
+..... .|. +||.|++.+++.+|..
T Consensus 73 ~~la~~---~d~--~~~~~~a~~~~~g~~~ 97 (161)
T cd00394 73 YYIATA---ANK--IVMAPGTRVGSHGPIG 97 (161)
T ss_pred HHHHhC---CCE--EEECCCCEEEEeeeEE
Confidence 544432 365 8999999999999864
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=68.26 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=77.4
Q ss_pred CCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC
Q 000092 1924 PADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK 2001 (2267)
Q Consensus 1924 PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~ 2001 (2267)
|.+..+.....+.+.. +|.+.+..+.-..+.+...+. -.-||.+..|++| |-.-.|-.|.+++...+
T Consensus 13 ~~~~~~~l~~~r~I~i-~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~ag~aI~d~i~~~~ 81 (197)
T PRK14512 13 IDKSLEKFLKSRSIVI-AGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG----------GDIDAGFAIFNMIRFVK 81 (197)
T ss_pred cchHHHHHhcCcEEEE-CCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhCC
Confidence 3333333333444444 578888888777777766554 3589999999999 45667788999999999
Q ss_pred CCEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2002 QPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2002 vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.|+++++. |.+.+ |+.++++..- . ..++.|+|++-+..|.+.
T Consensus 82 ~~V~t~v~--G~AaSaaslIl~ag~~--~--~R~~~p~s~imiHqP~~~ 124 (197)
T PRK14512 82 PKVFTIGV--GLVASAAALIFLAAKK--E--SRFSLPNARYLLHQPLSG 124 (197)
T ss_pred CCEEEEEE--eeeHhHHHHHHhcCCc--C--ceeECCCCcEEEEcCccc
Confidence 99999997 66666 5555555421 2 278899999999988754
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=74.33 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCC--cCCch
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMA--ELRGG 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g--~~~GG 2017 (2267)
-|.++|.++.-..|.++.|.++| -.+|...|||| |.+...-+|++++.++++|++.|+.|.| .+..|
T Consensus 34 ~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPG----------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAG 103 (436)
T COG1030 34 DGAIDPASADYLQRALQSAEEENAAAVVLELDTPG----------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAG 103 (436)
T ss_pred cCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCC----------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchh
Confidence 48999999999999999999998 88999999999 5666677899999999999998888765 44459
Q ss_pred hHhhhccccCCccceeecccccEEEeeCc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|+++++ |. .+|-|+..+|...|
T Consensus 104 tyI~m~~----hi--aaMAPgT~iGaa~P 126 (436)
T COG1030 104 TYILMAT----HI--AAMAPGTNIGAATP 126 (436)
T ss_pred hHHHHhc----Ch--hhhCCCCcccccce
Confidence 9999986 55 88999998887777
|
|
| >TIGR00527 gcvH glycine cleavage system H protein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0015 Score=70.62 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=43.1
Q ss_pred eecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 690 LVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 690 l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
......|.|+.+.. ++|++|++||+++.||+||+..+|.||.+|+|..+
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 79 (127)
T TIGR00527 30 FAQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV 79 (127)
T ss_pred HHhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence 34567888877754 57999999999999999999999999999999877
|
The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff. |
| >PRK15030 multidrug efflux system transporter AcrA; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0048 Score=79.12 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=61.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc--------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2267)
...|.++.+|+|.++.|++||+|++||+|++|+.-.
T Consensus 65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d 144 (397)
T PRK15030 65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD 144 (397)
T ss_pred EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 345999999999999999999999999999997411
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCCE--EEEEecCCC
Q 000092 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGEL--IARLDLDDP 759 (2267)
Q Consensus 723 ---------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~~--La~l~~~~~ 759 (2267)
=...|+||.+|+|... +++|+.|.+|+. |++|...++
T Consensus 145 ~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 145 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence 0246999999999888 999999999985 677755554
|
|
| >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0034 Score=80.18 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=61.5
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM-------------------------------------------- 723 (2267)
..|.++++|+|.++.|++||+|++||+|+.|+.--.
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 469999999999999999999999999999975200
Q ss_pred ---------------------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCCC
Q 000092 724 ---------------------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDDP 759 (2267)
Q Consensus 724 ---------------------------~~~l~ap~~G~v~~i-~~~G~~v~~G--~~La~l~~~~~ 759 (2267)
...|+||.+|+|... +.+|+.|.+| ++|++|...++
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence 247999999999877 9999999996 58988876655
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.027 Score=65.50 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred cCCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1939 QAGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1939 ~~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
..||.+.+.++..+...+...+.. .-|+.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 29 fl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~t~~~--G~AaS 96 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG----------GSVYDGLGIFDTMQHVKPDVHTVCV--GLAAS 96 (196)
T ss_pred EECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehh
Confidence 457889999998888777766653 489999999999 4455677899999999999999998 76666
Q ss_pred hh-HhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GA-WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga-~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.| .+.++. +....+|.|+|++.+-.|.+.
T Consensus 97 ~AslIl~aG----~~~~R~~~p~a~iMIHqP~~~ 126 (196)
T PRK12551 97 MGAFLLCAG----AKGKRSSLQHSRIMIHQPLGG 126 (196)
T ss_pred HHHHHHhCC----CCCceecCCCCEEEEecCCcc
Confidence 44 434443 222378999999999988643
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=67.08 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=72.0
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+....+.+..++.. .-|+.+..|++| |-.-.|-.|.+++...+.|+++++. |.+.+ |
T Consensus 41 ~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~g~~I~d~i~~~~~~v~t~~~--G~aaSaa 108 (207)
T PRK12553 41 GGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG----------GSVTAGDAIYDTIQFIRPDVQTVCT--GQAASAG 108 (207)
T ss_pred cceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhcCCCcEEEEE--eehhhHH
Confidence 5788899999988888877665 579999999999 4566778899999999999999998 66666 4
Q ss_pred hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+++.++.. ... .+|.|+|++.+-.|.
T Consensus 109 ~lI~~ag~--~~~--R~~~p~s~imiH~p~ 134 (207)
T PRK12553 109 AVLLAAGT--PGK--RFALPNARILIHQPS 134 (207)
T ss_pred HHHHHcCC--cCc--EEECCCchhhhcCcc
Confidence 44455442 122 689999999999886
|
|
| >PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0056 Score=77.78 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.||++|.|.++.|++||+|++||+|++|+.
T Consensus 62 ~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 458999999999999999999999999999986
|
|
| >PRK12784 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0096 Score=57.63 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=63.6
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcccccee-eecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMP-LLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~-l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.||.-|+|-+++|.+++.|-+=++|+.|+.|.-+++ |..-.+|-|+.+ +.+||.+.++.+|+.++.|
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 47899999999999999999999999999999987777 455789999999 9999999999999999865
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.059 Score=62.58 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=70.6
Q ss_pred cccCCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC
Q 000092 1937 VPQAGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL 2014 (2267)
Q Consensus 1937 ~~~~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~ 2014 (2267)
+-..+|.+.+..+..+..-+...+. ..-|+.+..|++| |-...|-.|.+.+...+.|+.+++. |.+
T Consensus 28 iI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG----------G~v~~g~~I~d~l~~~~~~v~t~~~--G~A 95 (191)
T TIGR00493 28 IIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG----------GSITAGLAIYDTMQFIKPDVSTICI--GQA 95 (191)
T ss_pred EEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--Eee
Confidence 3345788888777766655544443 3579999999999 4456778899999999999999987 766
Q ss_pred Cc-hhHhhhccccCCccceeecccccEEEeeCccc
Q 000092 2015 RG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2015 ~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
.+ |++++++.. .+. .+|.|+|++.+-.|.+
T Consensus 96 aSaaslI~~aG~--~~~--r~~~p~s~imiH~p~~ 126 (191)
T TIGR00493 96 ASMGAFLLSAGA--KGK--RFSLPNSRIMIHQPLG 126 (191)
T ss_pred ccHHHHHHhcCC--CCc--EEecCCceEEEecCcc
Confidence 66 555555432 223 6889999999999865
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0058 Score=78.84 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc--------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK-------------------------------------------- 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK-------------------------------------------- 722 (2267)
...|.++++|+|.++.|++||+|++||+|++|..-.
T Consensus 87 ~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld 166 (415)
T PRK11556 87 TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELD 166 (415)
T ss_pred EEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 456999999999999999999999999999995410
Q ss_pred ---------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000092 723 ---------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2267)
Q Consensus 723 ---------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2267)
-...|+||++|+|... +++|+.|.+|+ .|++|...++
T Consensus 167 ~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 233 (415)
T PRK11556 167 AQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHP 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCCc
Confidence 0347999999999888 99999999985 5777654443
|
|
| >PRK09859 multidrug efflux system protein MdtE; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0059 Score=78.00 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=60.4
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc---------c------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---------K------------------------------------ 722 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM---------K------------------------------------ 722 (2267)
..|.++.+|+|.++.|++||+|++||+|++|+.= |
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~ 141 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDT 141 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 3589999999999999999999999999999831 0
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCCC--EEEEEecCCC
Q 000092 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAGE--LIARLDLDDP 759 (2267)
Q Consensus 723 --------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G~--~La~l~~~~~ 759 (2267)
=...|+||.+|+|... +.+|+.|.+|+ +|++|...++
T Consensus 142 a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 142 ARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1257999999999877 99999999995 6877755443
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.047 Score=62.39 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=79.7
Q ss_pred hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccc
Q 000092 227 QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQ 306 (2267)
Q Consensus 227 ~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvq 306 (2267)
....||+|||--.+.+|.|=.+|+|..++.+...-+... .+-+.+|.||+....+.+|-+++.+ .++ .|. |+
T Consensus 47 s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~--~~Y~T~EPfId~kyDirvqkIG~~y---kA~-~R~-si- 118 (203)
T PF02750_consen 47 SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAIT--KDYATTEPFIDAKYDIRVQKIGNNY---KAY-MRT-SI- 118 (203)
T ss_dssp S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHH--TS-EEEEE---EEEEEEEEEETTEE---EEE-EEE-ES-
T ss_pred cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhc--CceEEeeccccceeEEEEEEEcCeE---EEE-EEc-cc-
Confidence 345799999999999999999999999888765544422 4578999999887888888887643 332 231 11
Q ss_pred cccce------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc
Q 000092 307 RRHQK------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP 366 (2267)
Q Consensus 307 rr~qK------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp 366 (2267)
..+.| ..|..|. .++....+.++.+.+|---++.||.+.. ++|+-|++|+|-
T Consensus 119 s~nWK~N~gsa~lEqi~~-------~~ryk~Wvd~~s~lfGGlDI~~v~ai~~-kdGke~Iievnd 176 (203)
T PF02750_consen 119 SGNWKANTGSAMLEQIAM-------TERYKLWVDECSELFGGLDICAVDAIHG-KDGKEYIIEVND 176 (203)
T ss_dssp SSTSSTTSSSEEEEEE----------HHHHHHHHHHGGGGG--SEEEEEEEEE-TTS-EEEEEEE-
T ss_pred cccccccccchheeecCC-------ChHHHHHHHHHHHHcCCccEEEEEEEEc-CCCCEEEEEecC
Confidence 01112 2333332 2566667888888897778899999998 599999999995
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.054 Score=61.26 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
.|.+.+..+....+.+..++.. .-|+++..|+|| |..-.+-.|.+++...+.|+++++. |.+.+ |
T Consensus 6 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG----------G~v~~~~~i~~~i~~~~~~v~~~~~--g~aaS~~ 73 (162)
T cd07013 6 TGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG----------GDVFAGMAIYDTIKFIKADVVTIID--GLAASMG 73 (162)
T ss_pred ccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC----------CcHHHHHHHHHHHHhcCCCceEEEE--eehhhHH
Confidence 3677788888888888777654 379999999999 3455677889999999999999987 66666 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++... .. .++.|++++++-.|-+.
T Consensus 74 ~~i~~a~~~--g~--r~~~p~a~~~ih~~~~~ 101 (162)
T cd07013 74 SVIAMAGAK--GK--RFILPNAMMMIHQPWGG 101 (162)
T ss_pred HHHHHcCCC--Cc--EEEecCEEEEEccCccc
Confidence 555554422 12 57778999988777553
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.025 Score=64.85 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=93.7
Q ss_pred CCccCHHHHHHHHHHHHHh--cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-
Q 000092 1941 GQVWFPDSATKTAQALMDF--NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG- 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a--~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG- 2017 (2267)
+|.+.+..+......+... ....-|+.++.|++| |.+..|-.+.+++..++.|+.+++. |.+.+.
T Consensus 22 ~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG----------G~v~~g~~i~~~i~~~~~~v~t~~~--G~aaSaa 89 (182)
T PF00574_consen 22 NGPIDEESANRLISQLLYLENEDKNKPINIYINSPG----------GDVDAGLAIYDAIRSSKAPVTTVVL--GLAASAA 89 (182)
T ss_dssp ESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE----------BCHHHHHHHHHHHHHSSSEEEEEEE--EEEETHH
T ss_pred CCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC----------CccHHHHHHHHHHHhcCCCeEEEEe--Cccccce
Confidence 5788888888877665444 336689999999999 5567788999999999999999998 666664
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2097 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~ 2097 (2267)
+.+.++. +..+-+|.|+|.+.+-.|.....- ...++...+..++..-..+.+.+.+. ...+.++ +++
T Consensus 90 ~~i~~ag----~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~-tg~~~~~---i~~--- 156 (182)
T PF00574_consen 90 TLIFLAG----DKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAER-TGLSKEE---IEE--- 156 (182)
T ss_dssp HHHHHTS----STTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHH-HTS-HHH---HHH---
T ss_pred ehhhhcC----CcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHH-hCCcHHH---HHH---
Confidence 4444443 221237889999999888654332 22333333322222111111111111 0111111 111
Q ss_pred HHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2098 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2098 ~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
+ -..+.+=+|..+++.|+||.|+..
T Consensus 157 -----~---------~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 157 -----L---------MDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -----H---------CSSTEEEEHHHHHHHTSSSEEESS
T ss_pred -----H---------HhCCccccHHHHHHcCCCCEeccC
Confidence 0 012345579999999999999864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.059 Score=63.72 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=67.9
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
||.+....+..+...+-..+. .+-||.+..|++| |..-.|-.|.+++...+.|+.+++. |-+.+ |
T Consensus 60 ~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG----------Gsv~aGlaIyd~m~~~~~~V~tv~~--G~AAS~A 127 (221)
T PRK14514 60 GTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG----------GSVYAGLGIYDTMQFISSDVATICT--GMAASMA 127 (221)
T ss_pred CCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EEehhHH
Confidence 677777777776664433332 3589999999999 4455677899999999999999998 77776 4
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+.+.++... .. .+|.|+|++.+-.|.+.
T Consensus 128 slIl~aG~~--gk--R~~~pna~iMiHqP~~~ 155 (221)
T PRK14514 128 SVLLVAGTK--GK--RSALPHSRVMIHQPLGG 155 (221)
T ss_pred HHHHhcCCC--Cc--eeeCCCCEEEeccCCcc
Confidence 444444322 22 68899999999888754
|
|
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.13 Score=60.35 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=59.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCC--CCEEEEEccCCcCC-c
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYK--QPVFVYIPMMAELR-G 2016 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~--vP~i~vI~~~g~~~-G 2016 (2267)
|++. .+...+.++++.+.. .+ ..||+-.|++|.+ +..+..+..++..++ .|+++++- |-+. |
T Consensus 9 g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~----------~~~~~~l~~~i~~~~~~kpvia~v~--g~a~s~ 75 (207)
T TIGR00706 9 GAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGT----------VVASEEIYEKLKKLKAKKPVVASMG--GVAASG 75 (207)
T ss_pred EEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCC----------HHHHHHHHHHHHHhcCCCCEEEEEC--CccchH
Confidence 4444 456777888887754 23 4677778888732 223455666666666 99999997 5554 5
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
|.|+++.+ |. +||.|++.+|..|.-
T Consensus 76 g~~la~aa----D~--i~a~p~a~vg~iGv~ 100 (207)
T TIGR00706 76 GYYIAMAA----DE--IVANPGTITGSIGVI 100 (207)
T ss_pred HHHHHhcC----CE--EEECCCCeEEeeeEE
Confidence 66666654 66 999999998877663
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=60.81 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCCccCHHHHHHHH-HHHHHhcc-cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTA-QALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~a-rai~~a~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
-+|.+.+..+..+. +.+.+... ..-|+.+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+.
T Consensus 35 l~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG----------G~v~~g~aIyd~m~~~~~~V~Tv~~--G~AaS~ 102 (200)
T CHL00028 35 LGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG----------GSVISGLAIYDTMQFVKPDVHTICL--GLAASM 102 (200)
T ss_pred ECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------cchhhHHHHHHHHHhcCCCEEEEEE--EehHHH
Confidence 46777777776665 44444433 4689999999999 3455677899999999999999998 777774
Q ss_pred h-HhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 A-WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a-~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
| .+.++... .. .+|.|+|++.+-.|.+.
T Consensus 103 aslIl~aG~k--g~--R~~~p~s~imiHqp~~~ 131 (200)
T CHL00028 103 ASFILAGGEI--TK--RLAFPHARVMIHQPASS 131 (200)
T ss_pred HHHHHhCCCC--CC--EEecCCCeEEEecCccC
Confidence 4 44444322 12 68899999999888654
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.057 Score=61.55 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
.+|.+.+..+......+..++.. .-|+.+..|+|| |-.-.|-.|.+.+...+.|+.+++. |.+.++
T Consensus 14 i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG----------G~v~~~~~i~~~l~~~~~~v~t~~~--g~aaS~ 81 (171)
T cd07017 14 LGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPPVSTICL--GLAASM 81 (171)
T ss_pred EcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEE--eEehhH
Confidence 46888888888877777777654 379999999999 3455667888889889999999998 766665
Q ss_pred hHh-hhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWV-VVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~v-v~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+.+ .++... .. .+|.|+|++.+-.|.+.
T Consensus 82 ~~~i~~~g~~--~~--r~~~~~a~~~~h~~~~~ 110 (171)
T cd07017 82 GALLLAAGTK--GK--RYALPNSRIMIHQPLGG 110 (171)
T ss_pred HHHHHHcCCC--CC--EEEccchHHHHcCCCcc
Confidence 544 444322 13 78899999988888653
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.033 Score=74.24 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=73.5
Q ss_pred eeeEeecCeEEEEEEEeec-----CceEEEEECCeEEEEEEEEec---------------CCceEEEeCCceEEEEeeec
Q 000092 607 QVSLNIEGSKYRIDMVRRG-----PGSYTLRMNESEIEAEIHTLR---------------DGGLLMQLDGNSHVVYAEEE 666 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g-----~~~y~v~inG~~~~V~v~~l~---------------dg~~~v~~~G~s~~v~~~e~ 666 (2267)
.+++..+|+.|.|++...+ .....+.+||+..++.+...+ .+.+..-+.|....+.+++
T Consensus 465 e~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~- 543 (596)
T PRK14042 465 EFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSA- 543 (596)
T ss_pred EEEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCC-
Confidence 3555689999999997754 345677889988777554211 1223333444444443332
Q ss_pred ccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 667 AAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 667 ~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
+-.|..+..-+.++...-.+.|.||..|+|.+++|++|+.|..||+|++||+
T Consensus 544 --Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 544 --GDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred --CCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 2223333333344444445789999999999999999999999999999984
|
|
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.11 Score=60.62 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
-||.+.+..+.-+..-+-..+.. .-|+-+..|++| |-.-.|-.|.+++...+.|+.+++. |-+.+
T Consensus 32 l~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG----------G~v~~GlaIyd~m~~~~~~V~Ti~~--G~AaS~ 99 (201)
T PRK14513 32 VGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG----------GEVYAGLAIYDTMRYIKAPVSTICV--GIAMSM 99 (201)
T ss_pred ECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC----------CchhhHHHHHHHHHhcCCCEEEEEE--eeehhh
Confidence 37888888888886666555543 579999999999 3455677899999999999999998 77666
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
++.+.++.. ... .+|.|+|++-+=.|.+.
T Consensus 100 As~il~aG~--kgk--R~~~pna~iMIHqp~~~ 128 (201)
T PRK14513 100 GSVLLMAGD--KGK--RMALPNSRIMIHQGSAG 128 (201)
T ss_pred HHHHHhcCC--CCc--EEecCCeEEEEecCCCC
Confidence 444444432 112 57889999988888654
|
|
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.043 Score=57.05 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=58.0
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|----.+..++++-- .+..+ .++|. |. ......+.+.+ +..|.+.|+++|++
T Consensus 2 kVLviGsGgREHAia~~l~~s~--------~v~~v-~~aPG----N~-G~~~~~~~~~~-------~~~d~~~l~~~a~~ 60 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSP--------SVEEV-YVAPG----NP-GTAELGKNVPI-------DITDPEELADFAKE 60 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCT--------TEEEE-EEEE------T-TGGGTSEEE-S--------TT-HHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCC--------CCCEE-EEeCC----CH-HHHhhceecCC-------CCCCHHHHHHHHHH
Confidence 7999999965555566655431 12222 13322 22 22222334444 34678999999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHH
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAA 169 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~ 169 (2267)
.++|.|++|-...-. .-+.+.|.+.||..+||+.+++++
T Consensus 61 ~~idlvvvGPE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp TTESEEEESSHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred cCCCEEEECChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 999999999321111 124589999999999999988764
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.01 Score=73.56 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.+|.+|+| +++|++||+|++||+|++++.
T Consensus 21 ~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 21 EVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 456999999999 999999999999999999985
|
... |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.25 Score=58.71 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=63.1
Q ss_pred ccCHHHHHHHHHHHHHhccc-CCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHh
Q 000092 1943 VWFPDSATKTAQALMDFNRE-ELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWV 2020 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~~-~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~v 2020 (2267)
...+.+...+.+.++.|.+. ++- ||+-.|++|+++.... .....+..++....|+++++- +.+.||-|+
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~-------el~~~i~~~~~~~kpVia~~~--~~~sggy~l 95 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLE-------ELRQALERFRASGKPVIAYAD--GYSQGQYYL 95 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHH-------HHHHHHHHHHHhCCeEEEEeC--CCCchhhhh
Confidence 34467788899999988764 555 4555689998544332 234566667777899999986 545555566
Q ss_pred hhccccCCccceeecccccEEEeeCcc
Q 000092 2021 VVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2021 v~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
++.+ |. +||.|++.+|..|.-
T Consensus 96 asaa----d~--I~a~p~~~vg~iGv~ 116 (222)
T cd07018 96 ASAA----DE--IYLNPSGSVELTGLS 116 (222)
T ss_pred hhhC----CE--EEECCCceEEeeccc
Confidence 6654 65 999999999998763
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.029 Score=64.81 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=34.8
Q ss_pred ceEEEEEc---CcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vt---g~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
.|+|+.+. |.++|+|++++..||+++|.+++.+++.++
T Consensus 59 kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~ 99 (187)
T cd07020 59 VPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHP 99 (187)
T ss_pred CCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccc
Confidence 59999999 999999999999999999999998877554
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=3.7 Score=58.25 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=81.7
Q ss_pred EEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeec-ccceEEEEcCceeecc--cCCCCCceecCCCceeEEEEccC
Q 000092 629 YTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE-AAGTRLLIDGRTCLLQ--NDHDPSKLVAETPCKLLRYLVSD 705 (2267)
Q Consensus 629 y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~-~~~~~v~v~g~t~~~~--~~~d~~~l~APmPG~vv~~~V~~ 705 (2267)
+.+..+|..|..+|.+.+.+.+.+.+||..-++-+.+= ..++.++.+|+.+.+- .+.+
T Consensus 606 vdli~e~~kY~lkV~rss~~~y~l~mngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~------------------- 666 (2196)
T KOG0368|consen 606 VDLIYEGNKYTLKVVRSSSGTYVLRMNGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVD------------------- 666 (2196)
T ss_pred eEEEecCcEEEEEEEecCCceEEEEEcCcEEEEEEEEecCCcEEEEECCceEEEEEeeccc-------------------
Confidence 45667999999999999999999999998888877554 4567888889877653 3332
Q ss_pred CCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 706 GSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 706 Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|-++.-|---+.+|.-.=-..+++|.+|++... |+.|+-|.+||+-|++|
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 233344444555555444456899999998655 99999999999999987
|
|
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.014 Score=53.16 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=30.9
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
..|.+|.+|+|..+ +++|+.|++||+|++|+..+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46899999999999 99999999999999997654
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.18 Score=57.81 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcc-cCCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-hHhhh
Q 000092 1946 PDSATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVV 2022 (2267)
Q Consensus 1946 p~sa~K~arai~~a~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG-a~vv~ 2022 (2267)
..+...+.++++.+.+ .++- ||+-.|++|.... . .+....++.++..++.|+|+++- |.+.|| .|+++
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~---~----~~~~~~~i~~~~~~~kpVia~v~--G~a~g~g~~la~ 91 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVT---A----SEVIRAELAAARAAGKPVVASGG--GNAASGGYWIST 91 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHH---H----HHHHHHHHHHHHhCCCCEEEEEC--CchhHHHHHHHH
Confidence 3467788888888765 4555 4444566653221 1 12345567788888999999996 555554 44444
Q ss_pred ccccCCccceeecccccEEEeeCcc
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
. +|+ +||.|++.++..+.-
T Consensus 92 a----~D~--i~a~~~a~~~~~G~~ 110 (177)
T cd07014 92 P----ANY--IVANPSTLVGSIGIF 110 (177)
T ss_pred h----CCE--EEECCCCeEEEechH
Confidence 4 477 999999999998763
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.035 Score=71.41 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
....|.||.+|.|.+++|++||.|++||+|+.++.
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEcc
Confidence 45568999999999999999999999999999853
|
Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. |
| >TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.033 Score=69.58 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.7
Q ss_pred CceecCCC---ceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 688 SKLVAETP---CKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 688 ~~l~APmP---G~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
..|.+|.+ |+|.+++|++||+|++||+|++|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 35889999 9999999999999999999999985
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members. |
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.033 Score=54.00 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...+.||..|+|.++++++||.|+.||+|++||
T Consensus 37 ~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 37 MEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999997
|
|
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.18 Score=59.46 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhccc-CCcEEEE-ecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCC-chhHhhhcc
Q 000092 1948 SATKTAQALMDFNRE-ELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR-GGAWVVVDS 2024 (2267)
Q Consensus 1948 sa~K~arai~~a~~~-~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~-GGa~vv~~~ 2024 (2267)
+..-+.++++.+.+. ++-.|+| .|++|.+.... ......+..+.....|+++++- |-+. ||.|+++.
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~-------~~~~~~l~~~~~~~kpVia~v~--g~a~s~gy~la~~- 91 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVVSAG--GAAASGGYWISTP- 91 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEEC--CeehhHHHHHHHh-
Confidence 467788888887664 6555555 78877443221 1223456678888999999997 6554 45555555
Q ss_pred ccCCccceeecccccEEEeeCcc
Q 000092 2025 RINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2025 ~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|. +||.|++.+|.+|.-
T Consensus 92 ---aD~--i~a~~~a~~gsiGv~ 109 (211)
T cd07019 92 ---ANY--IVANPSTLTGSIGIF 109 (211)
T ss_pred ---CCE--EEEcCCCEEEEeEEE
Confidence 476 999999999887753
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.099 Score=64.36 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=25.3
Q ss_pred cEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccc
Q 000092 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 232 PVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
-+|+||..|+.|+||+++++.+++.+. ......+++||+||+.+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccCCC
Confidence 489999999999999999999998754 22335689999999753
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.28 Score=57.92 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=56.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEE-ecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hh
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFIL-ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GA 2018 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l-~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga 2018 (2267)
..+++.......++++.+.. .++-.|+| .|++|.+. .. .......+..+.. ..|+++++- |-+.| |.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~--~~-----~~~l~~~l~~~~~-~KpViA~v~--g~a~s~gy 89 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEV--AG-----VFELADAIRAARA-GKPIVAFVN--GLAASAAY 89 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcH--HH-----HHHHHHHHHHHhc-CCCEEEEEC--CchhhHHH
Confidence 34566788889999988865 45655555 67776321 11 1112233333444 599999997 54444 55
Q ss_pred HhhhccccCCccceeecccccEEEeeCc
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|+++. +|. +||.|+|.+|..|.
T Consensus 90 ~lA~~----aD~--i~a~~~a~~g~iG~ 111 (214)
T cd07022 90 WIASA----ADR--IVVTPTAGVGSIGV 111 (214)
T ss_pred HHHhc----CCE--EEEcCCCeEEeeeE
Confidence 55554 476 99999999887765
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.51 Score=55.45 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=62.2
Q ss_pred CccC---HHHHHHHHHHHHHhccc-CCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1942 QVWF---PDSATKTAQALMDFNRE-ELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1942 G~~~---p~sa~K~arai~~a~~~-~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
|.+. +.+...+.++++.+... ++- |++-.|++|.+... .+.....+..+...+.|+++++- |-+.|
T Consensus 9 g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~-------~~~i~~~i~~~~~~~kpvia~v~--g~~~s 79 (208)
T cd07023 9 GTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVA-------SEEIYREIRRLRKAKKPVVASMG--DVAAS 79 (208)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHH-------HHHHHHHHHHHHhcCCcEEEEEC--Ccchh
Confidence 4555 67888999999888653 344 55557877743322 12335567778888899999997 54544
Q ss_pred -hhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2017 -GAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2017 -Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
|.|++++ +|. +||.|++.+|..|.-
T Consensus 80 ~g~~lA~a----aD~--i~a~~~s~~g~iG~~ 105 (208)
T cd07023 80 GGYYIAAA----ADK--IVANPTTITGSIGVI 105 (208)
T ss_pred HHHHHHhh----CCE--EEECCCCeEEeCcEE
Confidence 5555554 476 999999999887663
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.038 Score=55.25 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.1
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
......|+||.+|+|.++.+++|+.|+.||+|++++
T Consensus 44 ~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 44 MKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334456999999999999999999999999999986
|
|
| >PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.056 Score=58.38 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=45.8
Q ss_pred ceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe---eC--CCCccCC----CCEEEEEecCCCCc
Q 000092 696 CKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK---MA--EGQAMQA----GELIARLDLDDPSA 761 (2267)
Q Consensus 696 G~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i---~~--~G~~v~~----G~~La~l~~~~~~~ 761 (2267)
|.|+.+.. ++|++|++|++++.||+.|...++.||.+|+|..+ +. |+ .++. .-=|+.|.+.++..
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~-lln~~p~~~gWl~~i~~~d~~~ 105 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPE-LLNSDPYGDGWLIKIKPSDPEE 105 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TT-HHHHSTTTTTEEEEEEESCGGG
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChH-HhccCCCCCCeEEEEEeCCHHH
Confidence 66666654 45999999999999999999999999999999887 22 32 3322 34488888876543
|
GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B .... |
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.072 Score=51.94 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...|+||++|+|.++++++||.|+.|+++++|+
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999884
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.68 Score=53.90 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.++...+..+...+.+... ..-|+.+..|||| |...+|-.|.+.+..-+.|+.+++. |-+.+ |
T Consensus 33 ~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG----------G~V~aG~AIydtm~~ik~~V~ti~~--G~AaSmg 100 (200)
T COG0740 33 GGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG----------GSVTAGLAIYDTMQFIKPPVSTICM--GQAASMG 100 (200)
T ss_pred eeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC----------cccchhHHHHHHHHhcCCCeEEEEe--cHHHhHH
Confidence 344555555555544444333 4689999999999 6667888999999999999999998 54444 6
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2097 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~ 2097 (2267)
+.+.++..- .. -++.|+|++=+=-|.|.+. =...|+...+..++..-..|..-++.. +..+.++ + ++..
T Consensus 101 s~l~~aG~~--g~--r~~lPnsrimIHqP~gg~~--G~a~Di~i~A~ei~~~~~~l~~i~a~~-TGq~~e~---i-~~d~ 169 (200)
T COG0740 101 SVLLMAGDK--GK--RFALPNARIMIHQPSGGAQ--GQASDIEIHAREILKIKERLNRIYAEH-TGQTLEK---I-EKDT 169 (200)
T ss_pred HHHHhcCCC--CC--ceeCCCceEEEecCCccCc--cCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH---H-HHhh
Confidence 666666532 22 4788999988877775431 011122222333332222222222221 1112221 1 1222
Q ss_pred HHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccc
Q 000092 2098 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDK 2138 (2267)
Q Consensus 2098 ~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~ 2138 (2267)
+|+-. =++..+++-|+||.|+...+
T Consensus 170 drd~~----------------msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 170 DRDTW----------------MSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred ccccc----------------CCHHHHHHcCCcceeccccc
Confidence 33333 36899999999999998764
|
|
| >PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.32 Score=59.86 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=110.6
Q ss_pred EEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHc
Q 000092 104 QFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAA 183 (2267)
Q Consensus 104 e~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~a 183 (2267)
..|.||..+ .+.+-|.+.+|....--||.....+-++.+...+++. ++...+ -.-.+..++...
T Consensus 47 ~~Y~VP~~T---------L~~~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~a~a-----P~GW~~~fa~~~ 110 (355)
T PF11379_consen 47 PPYFVPDDT---------LVGAQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPDAAA-----PAGWSPAFAERV 110 (355)
T ss_pred ceeecCCcc---------hhhhHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCCCCC-----CCCcCHHHHHHH
Confidence 477887522 2346788889988777788777777677666666632 222111 001112223322
Q ss_pred CCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhh--CCcEEEeecCCCCCcCeEEECCHHHHHHHHHH
Q 000092 184 NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVV--GYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ 261 (2267)
Q Consensus 184 GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~I--GyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~ 261 (2267)
.=-+.|.. ++.|.+|+..++..+ +-||=+||..+.||+|-+++.+.++|..++..
T Consensus 111 ~~~vL~G~-----------------------tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~ 167 (355)
T PF11379_consen 111 RDAVLPGY-----------------------TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAA 167 (355)
T ss_pred hhhccCCc-----------------------cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHc
Confidence 22233332 278999999888764 57999999999999999999999999999987
Q ss_pred HHhh-CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc
Q 000092 262 VQGE-VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR 308 (2267)
Q Consensus 262 ~~~e-~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr 308 (2267)
.-.. .....+.+|+-++...-+||--+.-+ |..++.++..|....+
T Consensus 168 ~~~~~l~~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~GtQ~lT~dn 214 (355)
T PF11379_consen 168 LDDAELARHGLVLEEDLEEVVTYSVGQVRVA-GLVASYYGTQRLTRDN 214 (355)
T ss_pred CCHHHHHhCCEEEecccCCCceeeEEEEEEC-CEEEEEeeEeecccCC
Confidence 5432 22457999999988888888754432 5677777666655333
|
|
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=55.68 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=62.7
Q ss_pred eeeEeecCeEEEEEEEeecCceEEEEE------CCeE--EEEE----EEE---ecCCc--eEEEeCCceEEEEeeecccc
Q 000092 607 QVSLNIEGSKYRIDMVRRGPGSYTLRM------NESE--IEAE----IHT---LRDGG--LLMQLDGNSHVVYAEEEAAG 669 (2267)
Q Consensus 607 ~vel~~~g~~Y~v~v~~~g~~~y~v~i------nG~~--~~V~----v~~---l~dg~--~~v~~~G~s~~v~~~e~~~~ 669 (2267)
.+.+.+||+.|.+++...+...-..-. .... -... ... ...|. +...+.|....+++.+ +
T Consensus 4 ~~~itvng~~y~V~vee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ap~~G~V~~i~V~~---G 80 (130)
T PRK06549 4 KFKITIDGKEYLVEMEEIGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAV---G 80 (130)
T ss_pred eEEEEECCEEEEEEEEEccCccccccccCccccCCCcccCCccccccCCCCccCCCCCcEEECCCCEEEEEEEeCC---C
Confidence 366788999999999886533100000 0000 0000 000 11122 2334556555555432 2
Q ss_pred eEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 670 TRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 670 ~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
-.+..+..-+.++...-...|.||..|+|.+++|++||.|+.||+|++|
T Consensus 81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 2223333333333333456799999999999999999999999999986
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.36 Score=57.19 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred HHHHH-HHHHHHhcc-cCCcEEEEecCCCCCCchhhhhh----chHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhh
Q 000092 1948 SATKT-AQALMDFNR-EELPLFILANWRGFSGGQRDLFE----GILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2021 (2267)
Q Consensus 1948 sa~K~-arai~~a~~-~~lPLv~l~d~~Gf~~G~~~e~~----gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv 2021 (2267)
.+..+ ++.+-+... ..-|+-+..|++|- +.+. |..-.|-.|.+++...+-|+.+++. |-+.+.|-+.
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGG-----sv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~--G~AaS~AslI 125 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGT-----SWYTGDAIGFETEAFAICDTMRYIKPPVHTICI--GQAMGTAAMI 125 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCC-----CccccccccccccHHHHHHHHHhcCCCeEEEEE--eehhhHHHHH
Confidence 55554 444444333 46899999999992 2222 2345677899999999999999998 7777754444
Q ss_pred hccccCCccceeecccccEEEeeCccch
Q 000092 2022 VDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2022 ~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+... +.-..+|.|+|++-+=.|.+.
T Consensus 126 l~aG---~kg~R~alpns~iMIHqP~~~ 150 (222)
T PRK12552 126 LSAG---TKGQRASLPHATIVLHQPRSG 150 (222)
T ss_pred HhCC---CCCceecCCCcEEEeccCCcc
Confidence 4331 212267889999988888654
|
|
| >PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.1 Score=54.60 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=35.7
Q ss_pred EEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 699 LRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 699 v~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.+..|++||+|++||.|++-+. -|..+|.||.+|+|+.+
T Consensus 42 ~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I 80 (101)
T PF13375_consen 42 AEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI 80 (101)
T ss_pred ceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence 4578999999999999999986 66889999999999988
|
|
| >cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.16 Score=63.38 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
..++||.+| ++...++.||.|++||+|++|--+ ....+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~-~~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR-RPPGLVRRGDCLAVLAA 315 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe-eCCCccCCCCEEEEEec
Confidence 469999999 666889999999999999998654 34678999999988655 23356899999998753
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.12 Score=59.53 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=36.1
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
+|++++|.|.+.|+|++++..||+++|.+++.|+..||
T Consensus 59 ~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 59 IPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP 96 (178)
T ss_pred CCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee
Confidence 59999999999999999999999999999999988887
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.19 Score=60.50 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=73.2
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhh
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVV 2021 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv 2021 (2267)
+.+..+.+....|+|+.+.+ +.|+..+.+|+| |...+.-+|+.++.++..|+.++|+ +-..-||+.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~-~~~IdLii~TpG----------G~v~AA~~I~~~l~~~~~~v~v~VP-~~A~SAGTlIA 137 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPK-DKPIDLIIHTPG----------GLVDAAEQIARALREHPAKVTVIVP-HYAMSAGTLIA 137 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCC-CCceEEEEECCC----------CcHHHHHHHHHHHHhCCCCEEEEEC-cccccHHHHHH
Confidence 56778889999999999975 458999999999 6677788899999999999998886 55566788888
Q ss_pred hccccCCccceeecccccEEEeeCcc
Q 000092 2022 VDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2022 ~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
++. |- ++|.|+|.+|.++|.
T Consensus 138 LaA----De--IvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 138 LAA----DE--IVMGPGAVLGPIDPQ 157 (285)
T ss_pred HhC----Ce--EEECCCCccCCCCcc
Confidence 875 64 899999999988883
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.92 Score=52.24 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=67.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhh-----------hhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.+.......++++.+.+ ...-+|+|...++ |+.|..-. .....+....++..+..+++|+|+.|
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 68889999999999999876 5677777776544 66664311 12345566778888889999999999
Q ss_pred ccCCcCCchhHhhhccccCCccceeecccccEEEeeC
Q 000092 2009 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2009 ~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
- |.+.||++..... .|+ ++|.++++++.-+
T Consensus 101 ~--G~a~g~G~~la~~---~D~--~i~~~~~~~~~pe 130 (195)
T cd06558 101 N--GAALGGGLELALA---CDI--RIAAEDAKFGLPE 130 (195)
T ss_pred C--CeeecHHHHHHHh---CCE--EEecCCCEEechh
Confidence 6 7767755443322 466 7777777766533
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.31 Score=70.20 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=82.3
Q ss_pred eEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeec
Q 000092 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2267)
Q Consensus 650 ~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~a 729 (2267)
+.+.+||+.+.|.+.+...... ..........++..|.|||||+|++|+|++||.|++||+|++|||||||++|.|
T Consensus 1043 ~~~~vnG~~~~V~v~d~~~~~~----~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~A 1118 (1146)
T PRK12999 1043 VYFELNGQPREVQVRDRSVKST----VAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITA 1118 (1146)
T ss_pred EEEEECCEEEEEEEecCccccc----cccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEec
Confidence 4556666666666654332111 011112244567899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 730 PASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 730 p~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
|.+|+|+.+ +++|+.|+.||+|++|++
T Consensus 1119 p~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1119 PVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 999999999 999999999999999863
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.18 Score=67.77 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=64.9
Q ss_pred ceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEE-E----ec-CCceEEEeCCceEEEEeeecccceEEEEcCce
Q 000092 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIH-T----LR-DGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2267)
Q Consensus 605 ~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~-~----l~-dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t 678 (2267)
...+.+.+||+.|.+++...++- -.+...+........ . .. ...+...+.|....+.+++ +-.|..+..-
T Consensus 477 ~~~~~~~vnG~~~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~---Gd~V~~Gd~l 552 (593)
T PRK14040 477 SETYTVEVEGKAYVVKVSEGGDI-SQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTE---GQTVAEGDVL 552 (593)
T ss_pred CeEEEEEECCEEEEEEECCCCcc-ccccccccccccccccccccCCCCCceEECCccEEEEEEEeCC---CCEeCCCCEE
Confidence 45688889999999999765421 122223322221110 0 01 1133444556555544432 2222222222
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
+.++...-.+.|.||.+|+|.++.|++||.|+.||+|++|
T Consensus 553 ~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 553 LILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred EEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 3333333346799999999999999999999999999987
|
|
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.11 Score=57.55 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.+.|.||..|+|.+++|++||.|+.||+|++|+
T Consensus 107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 467999999999999999999999999999997
|
|
| >COG3608 Predicted deacylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.16 Score=62.86 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=53.6
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLD 755 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM---KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~ 755 (2267)
..++||-.| ++.++|+.||.|++||+|+.|=.+ +-+.+|+|+.+|+|......+ .+++|+++..+.
T Consensus 257 ~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~-~v~~Gdl~~~v~ 325 (331)
T COG3608 257 EMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR-LVQPGDLLKVVG 325 (331)
T ss_pred ceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc-ccCCCCeeeeec
Confidence 459999999 778999999999999999999888 788899999999986553222 355567777653
|
|
| >COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.094 Score=56.68 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=42.6
Q ss_pred eecCCCceeEEEE-ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 690 LVAETPCKLLRYL-VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 690 l~APmPG~vv~~~-V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
...-+-|.|+-+. .+.|++|++|+++++||+-|-..+|.||.+|+|..+
T Consensus 33 ~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 33 YAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred HHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 3445678888874 578999999999999999999999999999998776
|
|
| >TIGR02994 ectoine_eutE ectoine utilization protein EutE | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.26 Score=61.88 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=52.9
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
.-++||.+| ++...++.||.|++||++++|=-. ....+|+||.+|+|-.. ...-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~G-i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~-~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDG-LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR-HFPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCe-EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE-eCCCccCCCCEEEEe
Confidence 459999999 455889999999999999999653 24678999999998764 344678888988876
|
Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. |
| >cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.24 Score=61.41 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc---ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM---KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM---KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
...|+||.+| ++...++.||.|++||+|++|=-. ....+++||.+|+|-.+ ...-.|.+|+.|+.|
T Consensus 229 ~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~-~~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL-REYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe-ecCCeecCCceEEEe
Confidence 3458999999 566779999999999999999553 34678999999988665 334678889988876
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.25 Score=60.97 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=51.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc--ccceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM--KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
..++||.+|.+. ..++.||.|++||+++.|--. ....+|+||.+|+|.. ....-.|.+|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~-~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG-RNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE-ecCCCccCCCCEEEEe
Confidence 469999999755 689999999999999999542 1236899999999844 4455568899998876
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.4 Score=53.00 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh---------hhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
...++++.......+++.++. .++-+|++...++ |+.|..- ......+....++..+..+..|+|+.|-
T Consensus 19 ~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 19 RNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp TTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 468899999999999999876 4545677655443 7766531 1233445678889999999999999997
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+. .++. .|+ ++|.+++.++.
T Consensus 99 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 125 (245)
T PF00378_consen 99 --GHAVGGGFELALA----CDF--RIAAEDAKFGF 125 (245)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTTEEET
T ss_pred --ccccccccccccc----cce--EEeecccceee
Confidence 66666544 3443 477 88888888665
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.92 Score=53.94 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCccCHHHHHH-HHHHHHHh-cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATK-TAQALMDF-NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K-~arai~~a-~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
-||.+.++.+.- +||++-+- .....||..+.|+|| |..-.|-.|.+.+.-.+-|+-++.+ |-+.+
T Consensus 97 lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG----------G~vtaglAIYDtMq~ik~~V~Tic~--G~Aas~ 164 (275)
T KOG0840|consen 97 LGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG----------GSVTAGLAIYDTMQYIKPDVSTICV--GLAASM 164 (275)
T ss_pred eCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC----------CccchhhhHHHHHHhhCCCceeeeh--hhHHhH
Confidence 367777766554 56777654 447899999999999 4456778899999999999999998 77777
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccchh
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2050 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav 2050 (2267)
||+...+.+-+ . -||.|++++-+=-|.|.+
T Consensus 165 aalLLaaG~KG--~--R~alPnsriMIhQP~gga 194 (275)
T KOG0840|consen 165 AALLLAAGAKG--K--RYALPNSRIMIHQPSGGA 194 (275)
T ss_pred HHHHHhcCCCc--c--eeecCCceeEEeccCCCc
Confidence 55554444332 2 689999999998888764
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.22 Score=60.11 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=59.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. |...+.+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~e-A~~ 172 (249)
T PRK07110 94 PIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAE-LKK 172 (249)
T ss_pred CCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 469999999999999999999999999999864 3322 2233555555332 11233344443 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.++++ .+..+.+.++..-+
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~l 196 (249)
T PRK07110 173 RGVPFPVLPR-AEVLEKALELARSL 196 (249)
T ss_pred cCCCeEEeCh-HHHHHHHHHHHHHH
Confidence 9999999974 45556666654433
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.6 Score=67.14 Aligned_cols=125 Identities=16% Similarity=0.352 Sum_probs=99.6
Q ss_pred ceEEEEE-CCeEEEEEEEEec----CC--ceEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeE
Q 000092 627 GSYTLRM-NESEIEAEIHTLR----DG--GLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLL 699 (2267)
Q Consensus 627 ~~y~v~i-nG~~~~V~v~~l~----dg--~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv 699 (2267)
..+.+.+ +|+.+.|++...+ +| .+.+.+||..+.+.+.+..... .+......+..++++|.|||||+|+
T Consensus 1011 ~e~~v~~~~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~----~~~~~~KAd~~~~~~I~a~~~G~v~ 1086 (1143)
T TIGR01235 1011 EEIEVDIEKGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKA----EAAVRRKADPGNPAHVGAPMPGVII 1086 (1143)
T ss_pred cEEEEEecCCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccc----ccccccccccccCceeecCCCcEEE
Confidence 4567777 5777777665432 23 3457789999988876654211 1122222345678899999999999
Q ss_pred EEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 700 RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 700 ~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+|+|++||+|++||+|++||||||+++|.||.+|+|+.+ +++|+.|+.|++|++|+
T Consensus 1087 ~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1087 EVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 999999999999999999999999999999999999998 99999999999999985
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.33 Score=59.12 Aligned_cols=210 Identities=16% Similarity=0.124 Sum_probs=126.1
Q ss_pred HHcCCCEEEeCCCcC--CCCCchH---HHHHHcCCeEeCCCHHHHHHhcCHHHHHH----HHHHcC---CCCCCCCCCCc
Q 000092 128 EMTRVDAVWPGWGHA--SEIPELP---DTLSTKGIIFLGPPATSMAALGDKIGSSL----IAQAAN---VPTLPWSGSHV 195 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~--sEn~~la---~~l~~~GI~fiGPs~eam~~lgDK~~~k~----laq~aG---VPtpp~~~~~~ 195 (2267)
+....|+|+.+-+-. .+|.++. ..+...||+++ ++...+-...||-..+. +..+.| +|..+-..
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--- 227 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--- 227 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee---
Confidence 455778888775432 2444454 44566899998 77888888888765443 334455 44433111
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
| -+- ......-.||+|+|=-.+-.|.|-.+|+|-+||.+.-.-+.- . ....-+|.
T Consensus 228 ---------------y-----PnH---K~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval-~-~Tyat~ep 282 (488)
T KOG3895|consen 228 ---------------Y-----PNH---KEMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVAL-T-KTYATAEP 282 (488)
T ss_pred ---------------c-----CCc---hhhccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHH-H-hhhhhccc
Confidence 1 111 112233459999999999999999999999998764332221 1 12346788
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCC-HHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP-LETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~-~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
||+....+.||-++..|...+- + ++ -.|.|....+ ..+. -...++-......+.+.+|---+|.|+.+..
T Consensus 283 FiDaKYDiriQKIG~nYKaymR---t--sI-sgnWKtNtGS--amLEQIamseRyklwvdtcse~fGgldICav~alhs- 353 (488)
T KOG3895|consen 283 FIDAKYDIRIQKIGHNYKAYMR---T--SI-SGNWKTNTGS--AMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHS- 353 (488)
T ss_pred cccccceeehhhhhhhHHHHhh---h--hh-ccCcccCchH--HHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeec-
Confidence 8877677888877765532221 0 11 1233321111 1010 0112333445566778888888999999987
Q ss_pred cCCcEEEeeeCcc---CcCCccee
Q 000092 355 ETGEYYFLELNPR---LQVEHPVT 375 (2267)
Q Consensus 355 ~~g~~yfLEINpR---lqgehpvt 375 (2267)
++|+=|++|+|-- +=|||..-
T Consensus 354 KdGrd~i~eV~d~smpliGeh~ee 377 (488)
T KOG3895|consen 354 KDGRDYIIEVMDSSMPLIGEHQEE 377 (488)
T ss_pred ccchhheeeeccccccccccchhH
Confidence 6899999999983 34666443
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.9 Score=51.42 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhh--------hhchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL--------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e--------~~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.+. ...-+|++...+ .|+.|..-. .....+.+..++..+..+..|+|+.|- |
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~--G 100 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACT--G 100 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEc--C
Confidence 4788999999999999887 455666666544 377665211 112233345677788889999999996 6
Q ss_pred cCCchhHh-hhccccCCccceeecccc-cEEEe
Q 000092 2013 ELRGGAWV-VVDSRINSDHIEMYADRT-AKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa~v-v~~~~~n~d~~~~~A~p~-A~~gv 2043 (2267)
-+.||+.. ++. .|+ ++|.++ ++++.
T Consensus 101 ~a~GgG~~lal~----~D~--rva~~~~a~f~~ 127 (229)
T PRK06213 101 HAIAKGAFLLLS----ADY--RIGVHGPFKIGL 127 (229)
T ss_pred eeeHHHHHHHHh----CCe--eeEecCCcEEEC
Confidence 66665443 444 477 788887 77765
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.23 Score=60.77 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|||+.|.|.|+|||..++..||++|+.+++. +++. |..-+-..+|... .-+.+.+. ++-...
T Consensus 109 ~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~-a~eA~~ 187 (272)
T PRK06142 109 RKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDID-AAEAEK 187 (272)
T ss_pred CCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcC-HHHHHH
Confidence 469999999999999999999999999999875 3332 2223444444322 11112222 233457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.++++.++....+.+|.
T Consensus 188 ~GLv~~vv~~~~~l~~~a~~~a 209 (272)
T PRK06142 188 IGLVNRVYDDADALLAAAHATA 209 (272)
T ss_pred cCCccEecCCHHHHHHHHHHHH
Confidence 9999999986344444555543
|
|
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.85 Score=57.16 Aligned_cols=174 Identities=17% Similarity=0.090 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhh
Q 000092 1943 VWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVV 2022 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~ 2022 (2267)
..+.+...+..+.++..+ .--+|+...||||=++. .. ...++.+..+..-+ |+++++. +=.+-||-|+++
T Consensus 79 ~~~~~~~~~~l~~~~~~~-~vk~vvL~inSPGG~v~---as----~~i~~~l~~l~~~~-PV~v~v~-~~AASGGY~IA~ 148 (317)
T COG0616 79 FIGGDDIEEILRAARADP-SVKAVVLRINSPGGSVV---AS----ELIARALKRLRAKK-PVVVSVG-GYAASGGYYIAL 148 (317)
T ss_pred cccHHHHHHHHHHHhcCC-CCceEEEEEECcCCchh---HH----HHHHHHHHHHhhcC-CEEEEEC-Ceecchhhhhhc
Confidence 334555555555555443 55689999999993322 11 23455666666666 9999886 455566777666
Q ss_pred ccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHH----HHHHhhcCCCHHHHHHHHHHHHH
Q 000092 2023 DSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMA----KLQEAKNNRTLAMVESLQQQIKA 2098 (2267)
Q Consensus 2023 ~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~----~l~~~~~~~~~~~~~~~~~~i~~ 2098 (2267)
+. |. +||.|+|.+|-+|+-.. .....+.|.+++......++ .....-...++++++.++..+.+
T Consensus 149 aA----d~--I~a~p~si~GSIGVi~~------~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e 216 (317)
T COG0616 149 AA----DK--IVADPSSITGSIGVISG------APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDE 216 (317)
T ss_pred cC----CE--EEecCCceeeeceeEEe------cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHH
Confidence 64 65 99999999999888444 22333444444322111110 00000124556677766666655
Q ss_pred HHHh---------ccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccch
Q 000092 2099 REKQ---------LLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKS 2139 (2267)
Q Consensus 2099 r~~~---------l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~ 2139 (2267)
..++ -++.+. +-..+...|=+...+.+.|.||++-.-.+.
T Consensus 217 ~y~~F~~~V~~~R~~~~~~-~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 217 TYDEFVDKVAEGRGLSDEA-VDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHHHhcCCCChhH-HHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 3211 112222 333444466677888888888888765544
|
|
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.24 Score=49.96 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...+.||..|+|.+++|++||.|..||+|+.|+.
T Consensus 42 ~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 42 KVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred eEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 3479999999999999999999999999999973
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.21 Score=60.64 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=57.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecchH-HHHHhhcccc----ccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS-ALNKLLGREV----YSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltGp~-al~~~lG~ev----y~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.|+. .+.+.+|... .-+.+.+.+.+ ...-|+
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~lll~g~~~~a~e-A~~~GL 175 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAAE-LYRRGV 175 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHHHHcCCeeCHHH-HHHcCC
Confidence 369999999999999999999999999999864 4555542 3556666432 11222222222 346899
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
++.++++ .+..+.+.+|..
T Consensus 176 v~~vv~~-~~~~~~a~~~a~ 194 (257)
T PRK06495 176 IEACLPP-EELMPEAMEIAR 194 (257)
T ss_pred cceecCH-HHHHHHHHHHHH
Confidence 9999974 444455555543
|
|
| >cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.31 Score=60.24 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc--cccceeeecCCCcEEEEeeCCCCccCCCCEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV--MKMCMPLLSPASGVLQFKMAEGQAMQAGELI 751 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa--MKM~~~l~ap~~G~v~~i~~~G~~v~~G~~L 751 (2267)
+...++||.+| ++...++.||.|++||+|++|=- -....+|+||.+|+|-.+.. .-.|.+|+.|
T Consensus 222 ~~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~-~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA-TLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC-CCccCCCCcc
Confidence 34579999999 66688999999999999999922 13467899999999866521 2345555544
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.23 Score=60.58 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=59.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---chHHHHHhhccc----cccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGRE----VYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---Gp~al~~~lG~e----vy~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. |...+-+.+|.. ..-+.+.+.+.+ +..-
T Consensus 101 ~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~~ 179 (265)
T PRK05674 101 KIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRR-AREL 179 (265)
T ss_pred CCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHH-HHHC
Confidence 369999999999999999999999999998864 3333 222344445532 222333444433 4578
Q ss_pred CceEEEecCcHHHHHHHHHHHhcC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
|++|.++++ .+..+.+.+|..-+
T Consensus 180 Glv~~vv~~-~~l~~~a~~~a~~l 202 (265)
T PRK05674 180 GLLAESYPA-AELEAQVEAWIANL 202 (265)
T ss_pred CCcceecCH-HHHHHHHHHHHHHH
Confidence 999999974 45556666665443
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.24 Score=59.94 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcc----ccccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGR----EVYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~----evy~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |..-+-..+|. +..-+...+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 170 (255)
T PRK06563 92 SKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQE-ALR 170 (255)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHH-HHH
Confidence 46999999999999999999999999999887533 22 12224445553 2222333444333 447
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+..|.
T Consensus 171 ~Glv~~vv~~~-~l~~~a~~~a 191 (255)
T PRK06563 171 LGLVQEVVPPG-EQLERAIELA 191 (255)
T ss_pred cCCCcEeeCHH-HHHHHHHHHH
Confidence 89999999754 3444444443
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.29 Score=59.35 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=57.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c---chHHHHHhhccccc----cccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---GFSALNKLLGREVY----SSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t---Gp~al~~~lG~evy----~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-..+|.... -+...+. ++-....
T Consensus 96 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~-a~eA~~~ 174 (255)
T PRK07112 96 PYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVT-AQQAFSW 174 (255)
T ss_pred CCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCccc-HHHHHHc
Confidence 469999999999999999999999999999876433 2 11223333443321 1112222 2223479
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.+++++++.+..+.+-++-.|
T Consensus 175 Glv~~vv~~~~~~~~~~a~~l~~~~ 199 (255)
T PRK07112 175 GLVDAYGANSDTLLRKHLLRLRCLN 199 (255)
T ss_pred CCCceecCcHHHHHHHHHHHHHhCC
Confidence 9999999876655555544454444
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.26 Score=58.64 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=59.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+.+.+|... .-+...+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~e-A~~ 177 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEE-ALA 177 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 469999999999999999999999999998865433 2 2334556666532 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+.+|..
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~ 199 (222)
T PRK05869 178 LGLIDEMVAPD-DVYDAAAAWAR 199 (222)
T ss_pred CCCCCEeeCch-HHHHHHHHHHH
Confidence 89999999754 55566666544
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.28 Score=59.36 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||+.++..||++|+.+++.+.+ . |...+.+.+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~e-A~~ 176 (255)
T PRK07260 98 PKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEK-ALE 176 (255)
T ss_pred CCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999999976332 2 2223444455322 22223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+..+.
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a 197 (255)
T PRK07260 177 YGFVYRVAESE-KLEKTCEQLL 197 (255)
T ss_pred cCCcceecCHh-HHHHHHHHHH
Confidence 99999999754 3444444443
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.37 Score=58.55 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=57.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+.+.+ ...
T Consensus 98 ~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07511 98 PKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER-LHA 176 (260)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 47999999999999999999999999999997533 22 1123444455422 11223344333 457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+.+|.
T Consensus 177 ~Glv~~vv~~~-~~~~~a~~~a 197 (260)
T PRK07511 177 LGVVNRLAEPG-QALAEALALA 197 (260)
T ss_pred cCCccEeeCch-HHHHHHHHHH
Confidence 99999999754 3455555554
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=5 Score=48.88 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++...-..++++.+.+ ..+-+|+|.-.+ .|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 26 NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 57888999999999988764 456677776543 376665311 011122334577788999999999997
Q ss_pred cCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.| |..+++. .|+ ++|.++++++.
T Consensus 106 --G~a~GgG~~lal~----cD~--~va~~~a~f~~ 132 (260)
T PRK05809 106 --GFALGGGCELSMA----CDI--RIASEKAKFGQ 132 (260)
T ss_pred --CeeecHHHHHHHh----CCE--EEeeCCCEEeC
Confidence 66655 4444444 376 77777777665
|
|
| >cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.62 Score=59.30 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc-cc---cceeeecCCCcEEEEeeCCCCccCCCCEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV-MK---MCMPLLSPASGVLQFKMAEGQAMQAGELIARL 754 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa-MK---M~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l 754 (2267)
...++||-.| ++...++.||.|++||+|++|=- .. -+.+|+||.+|+|-.+ ...-.|.+|+.|+.|
T Consensus 289 ~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~-~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR-ASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe-cCCccccCCCeEEEe
Confidence 3469999999 56688999999999999999943 21 1223699999986554 556678899999876
|
This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding |
| >PF13437 HlyD_3: HlyD family secretion protein | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.28 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=30.9
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
.|+||..|.|..+.+++|+.|.+|++++.|..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999864
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.34 Score=59.05 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=57.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhccc----cccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~e----vy~s~~~lGG~~i~~~ 1806 (2267)
..|||+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|.. ..-+...+.+.+ ...
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 181 (266)
T PRK05981 103 PCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAET-ALQ 181 (266)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHH-HHH
Confidence 46999999999999999999999999999987532 21 122344444432 222333444444 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.++++ .+..+.+++|..
T Consensus 182 ~Glv~~vv~~-~~~~~~a~~~a~ 203 (266)
T PRK05981 182 WGLVNRVVDD-AELMAEAMKLAH 203 (266)
T ss_pred cCCceEeeCH-hHHHHHHHHHHH
Confidence 8999999975 455666666653
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.33 Score=55.84 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=58.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c-c---hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T-G---FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t-G---p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
.+|+|+++.|.|.|+|+.++..||++|+.+++.+.+ . + ...+.+..|... .-+...+- ++-+..
T Consensus 93 ~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~-a~ea~~ 171 (195)
T cd06558 93 PKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRIS-AEEALE 171 (195)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccC-HHHHHH
Confidence 479999999999999999999999999999865432 1 1 122333333322 11112222 233457
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.++++ .+..+.+.+|..
T Consensus 172 ~Glv~~~~~~-~~l~~~a~~~a~ 193 (195)
T cd06558 172 LGLVDEVVPD-EELLAAALELAR 193 (195)
T ss_pred cCCCCeecCh-hHHHHHHHHHHh
Confidence 9999999975 667777777754
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.24 Score=59.40 Aligned_cols=84 Identities=23% Similarity=0.143 Sum_probs=55.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|+.++..||++|+.+++.+.+. |-..+.+.+|.... -+...+. ++-...
T Consensus 90 ~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~-a~eA~~ 168 (245)
T PF00378_consen 90 PKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPIS-AEEALE 168 (245)
T ss_dssp SSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEE-HHHHHH
T ss_pred hhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccch-hHHHHh
Confidence 4699999999999999999999999999999864421 11234444444321 0111111 222457
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.|++|.+++++. ..+.++.+
T Consensus 169 ~Glv~~v~~~~~-l~~~a~~~ 188 (245)
T PF00378_consen 169 LGLVDEVVPDEE-LDEEALEL 188 (245)
T ss_dssp TTSSSEEESGGG-HHHHHHHH
T ss_pred hcceeEEcCchh-hhHHHHHH
Confidence 999999998766 44444444
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.36 Score=58.97 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=58.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+.+.+|... .-+...+.+.+ ...
T Consensus 106 ~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (269)
T PRK06127 106 AKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAE-ALR 184 (269)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 469999999999999999999999999999975432 2 2233555555332 11222233322 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.++++ .+....+++|...+
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~~l 208 (269)
T PRK06127 185 IGLVHRVTAA-DDLETALADYAATI 208 (269)
T ss_pred cCCCCEeeCH-HHHHHHHHHHHHHH
Confidence 8999999974 55656666665544
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=3.5 Score=50.34 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=62.3
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC---CCCCchhhhh--------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR---GFSGGQRDLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~---Gf~~G~~~e~--------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++-.....++++.+++..+-+|+|.-.. -|+.|..-.. .........++..+..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~- 104 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE- 104 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe-
Confidence 57888899999999998876556777776532 3666653211 01112234567788899999999996
Q ss_pred CCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||++ .++. .|+ ++|.++++++.
T Consensus 105 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 131 (261)
T PRK11423 105 -GSVWGGAFELIMS----CDL--IIAASTSTFAM 131 (261)
T ss_pred -cEEechHHHHHHh----CCE--EEecCCCEecC
Confidence 66666554 4444 366 77777777665
|
|
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.19 Score=49.46 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=31.3
Q ss_pred cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 683 ~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
.......+.||.+|+|.++++++||.|..||+|+.|
T Consensus 39 t~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 39 TMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred cCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 333345699999999999999999999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.43 Score=57.40 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC-Cc-------ceecch----HHHHHhhcccc-----ccccccCCccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QP-------IILTGF----SALNKLLGREV-----YSSHMQLGGPKIM 1804 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~-------i~ltGp----~al~~~lG~ev-----y~s~~~lGG~~i~ 1804 (2267)
..|||+.|.|.|+|||..++..||++|+.++ +. +++..| ..+...+|... .-+...+. ++-.
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~-a~eA 172 (239)
T PLN02267 94 PMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLT-AEEA 172 (239)
T ss_pred CCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCC-HHHH
Confidence 4699999999999999999999999999854 33 344312 22334445322 11222233 2224
Q ss_pred cccCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1805 ATNGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1805 ~~nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
...|++|.+++++.+..+.++++..-+
T Consensus 173 ~~~Glv~~vv~~~~~l~~~a~~~A~~i 199 (239)
T PLN02267 173 VEMGIVDSAHDSAEETVEAAVRLGEEL 199 (239)
T ss_pred HHCCCcceecCCHHHHHHHHHHHHHHH
Confidence 579999999976555556666655433
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=14 Score=45.79 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC---CCCCchhhh--hh---------chHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR---GFSGGQRDL--FE---------GILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~---Gf~~G~~~e--~~---------gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
.++..+......++++.++. -.+=+|+|.-.. .|+.|..-. .. ...+....++..+..+.+|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 57888999999999998865 456677776653 377775311 00 0111123456778889999999
Q ss_pred EEccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+...... .|+ ++|.++++++.
T Consensus 113 aV~--G~a~GgG~~lala---cD~--ria~~~a~f~~ 142 (278)
T PLN03214 113 AIR--GACPAGGCAVSLC---CDY--RLQTTEGTMGL 142 (278)
T ss_pred EEc--CcccchHHHHHHh---CCE--EEecCCCEecC
Confidence 996 7666655443332 477 78888877766
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=4.6 Score=49.12 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh-hh--------hchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
-.+.++......++++.++ ..+-+|+|.-.+ .|+.|..- +. ....+....++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~-- 100 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH-- 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 5788999999999999887 666677776533 37766531 11 01122345567788899999999996
Q ss_pred CcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||++. ++. .|+ ++|.++++++.
T Consensus 101 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 127 (255)
T PRK08150 101 GAVVGGGLELASA----AHI--RVADESTYFAL 127 (255)
T ss_pred CEEEcHHHHHHHh----CCE--EEEeCCCEEec
Confidence 766665544 433 476 77777777766
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=89.78 E-value=15 Score=45.27 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h------------------hchHHHHHHHHHHHhc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F------------------EGILQAGSTIVENLRT 1999 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~------------------~gilk~ga~iv~al~~ 1999 (2267)
-.+.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+....++..+..
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (275)
T PLN02664 30 NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQ 109 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998864 466777776543 266665211 0 0111233456778889
Q ss_pred CCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+..|+|+.|- |.+.|| .-+++. .|+ ++|.++++++.
T Consensus 110 ~~kPvIaav~--G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 146 (275)
T PLN02664 110 CRKPVIAAIH--GACIGGGVDIVTA----CDI--RYCSEDAFFSV 146 (275)
T ss_pred CCCCEEEEEC--CccccchHHHHHh----CCE--EEecCCCEecc
Confidence 9999999997 666654 444444 476 77777777655
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=89.72 E-value=4.3 Score=49.37 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=63.1
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh------------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~------------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.+++..+-+|+|.-.+ .|+.|..-.. ....+....++..+..+.+|+|+.|
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 100 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAV 100 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47889999999999999976556667775443 3766653110 0111122446678889999999999
Q ss_pred ccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||+.. ++. .|+ ++|.++++++.
T Consensus 101 ~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 128 (256)
T TIGR02280 101 N--GVAAGAGANLALA----CDI--VLAAESARFIQ 128 (256)
T ss_pred C--CeeehHHHHHHHh----CCE--EEecCCCEEeC
Confidence 7 666665443 443 477 88888887764
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.43 Score=58.03 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=57.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+.+ ...
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 177 (262)
T PRK08140 99 PLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQ-AEQ 177 (262)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 46999999999999999999999999999987532 21 2223444455321 11223333322 457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.+++++ +..+.+.+|..-+
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~i 201 (262)
T PRK08140 178 WGLIWRVVDDA-ALADEAQQLAAHL 201 (262)
T ss_pred cCCccEeeChH-HHHHHHHHHHHHH
Confidence 99999999754 4555666654433
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=4.5 Score=49.31 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--h------chHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E------GILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--~------gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++......++++.++. ..+-+|+|.-.+ .|+.|..-.. . ........++.++..+.+|+|+.|-
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN- 102 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC-
Confidence 47788999999999988764 467778887655 3777763211 0 0111123456778889999999996
Q ss_pred CCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 103 -G~a~GgG~~lala----cD~--~ia~~~a~f~~ 129 (261)
T PRK03580 103 -GYAFGGGFELALA----ADF--IVCADNASFAL 129 (261)
T ss_pred -CeeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 66666544 4444 366 77777776655
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.4 Score=57.21 Aligned_cols=194 Identities=15% Similarity=0.246 Sum_probs=108.2
Q ss_pred HHHHhcCCCCCccEEEEECc---h--HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC
Q 000092 37 EFCRSLGGKKPIHSILIANN---G--MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG 111 (2267)
Q Consensus 37 ~~~~~~~g~~~~kkVLIan~---G--~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~ 111 (2267)
+-.+..+|..--.+|.|.-- + ..-....+..++.||.++ |+.+.| +++.|......+
T Consensus 174 ~~y~~~~~~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~v----------I~d~~~-------L~y~~g~L~~~~- 235 (445)
T PF14403_consen 174 DIYRTFGGRVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCV----------ICDPRD-------LEYRDGRLYAGG- 235 (445)
T ss_pred HHHHHhcCcCCCCcEEEEecccCCccchHHHHHHHHHHcCCceE----------ecChHH-------ceecCCEEEECC-
Confidence 33445666554566777652 2 122356677788888875 233333 334555544432
Q ss_pred CCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCC-----
Q 000092 112 TNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVP----- 186 (2267)
Q Consensus 112 ~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVP----- 186 (2267)
.-+|.|-.-+-... +++-|+ +...|.++..+..+.++|+ -..+.++||..+..+-....-.
T Consensus 236 ------~~ID~VyRR~Vt~e---~l~~~d---~~~~li~Ay~~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~e 301 (445)
T PF14403_consen 236 ------RPIDAVYRRFVTSE---LLERYD---EVQPLIQAYRDGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAE 301 (445)
T ss_pred ------EeeehhhHhhhhHH---hhhccc---cchHHHHHHhcCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHH
Confidence 12444443333221 111221 3344566666666667655 4567888999888876554322
Q ss_pred -------CCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEE--CCHHHHHH
Q 000092 187 -------TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV--HNDDEVRA 257 (2267)
Q Consensus 187 -------tpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V--~s~eEL~~ 257 (2267)
..||... ++ .+.. .| -...-++.+.+..-.=-+|+||.++.||+||.+= .+.++.++
T Consensus 302 e~~~I~~HvP~T~~---l~--~~~~-----~~----~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~ 367 (445)
T PF14403_consen 302 ERAFIRRHVPWTRL---LT--AGRT-----TY----QGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEA 367 (445)
T ss_pred HHHHHHHhCCceEE---Ec--Cccc-----cc----cccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHH
Confidence 2334320 00 0000 00 0012234444333334589999999999999874 57888888
Q ss_pred HHHHHHhhCCCCcEEEEEecccc
Q 000092 258 LFKQVQGEVPGSPIFIMKVASQS 280 (2267)
Q Consensus 258 a~~~~~~e~~~~~I~VEeyI~g~ 280 (2267)
+++++. +++.++|+|++-.
T Consensus 368 ~l~~a~----~~~yilQe~v~~~ 386 (445)
T PF14403_consen 368 ALEEAA----REPYILQEYVRPP 386 (445)
T ss_pred HHHHHh----cCCcEEEEEecCC
Confidence 888876 4599999999653
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.48 Score=57.40 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=51.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecc---hHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG---FSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltG---p~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ...-
T Consensus 89 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~e-A~~~ 167 (251)
T TIGR03189 89 PVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAE-GARI 167 (251)
T ss_pred CCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHHC
Confidence 369999999999999999999999999999874 44431 122334444322 11222222222 3479
Q ss_pred CceEEEecCcHH
Q 000092 1808 GVVHLTVSDDLE 1819 (2267)
Q Consensus 1808 Gv~d~~v~dd~e 1819 (2267)
|++|.+++++++
T Consensus 168 Glv~~v~~~~~~ 179 (251)
T TIGR03189 168 GLANAVAEDPEN 179 (251)
T ss_pred CCcceecCcHHH
Confidence 999999976543
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.47 Score=57.56 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=57.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+.+ ...
T Consensus 93 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 171 (256)
T TIGR02280 93 PLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDART-AAS 171 (256)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 469999999999999999999999999999975432 1 1223444455432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+.+|..
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a~ 193 (256)
T TIGR02280 172 WGLIWQVVDDA-ALMDEAQALAV 193 (256)
T ss_pred cCCcceeeChH-HHHHHHHHHHH
Confidence 89999999754 55555655544
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.49 Score=57.39 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=55.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |...+-..+|... .-+.+.+.+.+ ...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~e-A~~ 170 (255)
T PRK09674 92 NKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQ-AQQ 170 (255)
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 3699999999999999999999999999998753 332 2223444455432 11222333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+++|.
T Consensus 171 ~Glv~~vv~~~-~~~~~a~~~a 191 (255)
T PRK09674 171 AGLVSEVFPPE-LTLERALQLA 191 (255)
T ss_pred cCCCcEecChH-HHHHHHHHHH
Confidence 99999999754 3334444443
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.55 Score=59.04 Aligned_cols=86 Identities=21% Similarity=0.186 Sum_probs=57.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-..+|... .-+..-+.+.+ ...
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~e-A~~ 239 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASE-ALK 239 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 4699999999999999999999999999998765432 2233555566432 11222222222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++. .+....+.+|..
T Consensus 240 ~GLV~~vv~~-~~l~~~a~~~a~ 261 (327)
T PLN02921 240 MGLVNTVVPL-DELEGETVKWCR 261 (327)
T ss_pred CCCceEEeCH-HHHHHHHHHHHH
Confidence 8999999974 445555555543
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.49 Score=57.56 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |...+-..+|... .-+.+.+.+.+ ...
T Consensus 98 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 176 (261)
T PRK08138 98 PKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPE-ALA 176 (261)
T ss_pred CCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999988653 332 2233444455432 11222333222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +....+++|.
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a 197 (261)
T PRK08138 177 IGLVSEVVEDE-QTLPRALELA 197 (261)
T ss_pred CCCCcEecCch-HHHHHHHHHH
Confidence 89999999754 4445555544
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.47 Score=58.20 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+ +-...
T Consensus 104 ~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A-~eA~~ 182 (275)
T PRK09120 104 QKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTG-RKAAE 182 (275)
T ss_pred CCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCH-HHHHH
Confidence 469999999999999999999999999999875332 2 2233555555432 112233322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|+++.+++++ +..+.+.+|.
T Consensus 183 ~Glv~~vv~~~-~l~~~a~~~a 203 (275)
T PRK09120 183 MGLVNESVPLA-QLRARTRELA 203 (275)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999743 3444444443
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.5 Score=57.93 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec---c-hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT---G-FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt---G-p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. | ..-+-..+|... .-+...+.+ +=...
T Consensus 111 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a-~eA~~ 189 (275)
T PLN02664 111 RKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSG-SEAKE 189 (275)
T ss_pred CCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCH-HHHHH
Confidence 4699999999999999999999999999998753 332 1 122344445322 112222222 22357
Q ss_pred cCceEEEecC
Q 000092 1807 NGVVHLTVSD 1816 (2267)
Q Consensus 1807 nGv~d~~v~d 1816 (2267)
-|++|.++++
T Consensus 190 ~GLv~~vv~~ 199 (275)
T PLN02664 190 LGLVSRVFGS 199 (275)
T ss_pred cCCCceeeCC
Confidence 8999999975
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.55 Score=58.41 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe-cCCccee-------c----chHHHHHhhccccc----cccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~-~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+ . |...+.+.+|.... -+.+.+.+.+ ..
T Consensus 135 pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~ 213 (302)
T PRK08321 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEE-AH 213 (302)
T ss_pred CCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHH-HH
Confidence 46999999999999999999999999998 5765333 2 22335555665331 1222232222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.++++ .+..+.+..|..
T Consensus 214 ~~GLv~~vv~~-~~l~~~a~~~a~ 236 (302)
T PRK08321 214 DMGAVNAVVPH-AELETEALEWAR 236 (302)
T ss_pred HCCCceEeeCH-HHHHHHHHHHHH
Confidence 79999999974 445455555543
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.41 Score=58.17 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=56.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+. -...
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~-eA~~ 175 (259)
T TIGR01929 97 PKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE-QALD 175 (259)
T ss_pred CCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHH-HHHH
Confidence 469999999999999999999999999998875433 2 2333555556432 1121222222 2356
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +....+.+|.
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a 196 (259)
T TIGR01929 176 MGLVNTVVPLA-DLEKETVRWC 196 (259)
T ss_pred cCCcccccCHH-HHHHHHHHHH
Confidence 89999999754 4445555543
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=89.34 E-value=3.6 Score=47.18 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=58.4
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccce-----------------------EEEecCCCCCCHHH
Q 000092 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK-----------------------IIEEGPITVAPLET 325 (2267)
Q Consensus 269 ~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qK-----------------------iieeaPa~~l~~e~ 325 (2267)
....||||+-|. ++-+..|...=-+-+-+.+-| ||+|- ++..-|+. +-+.+
T Consensus 21 ~~~~IeEyviG~-~~~~~yFySpi~~~~Ellg~D----~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESL 94 (188)
T PF06973_consen 21 ENAIIEEYVIGV-PFYFHYFYSPIKDRVELLGID----RRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESL 94 (188)
T ss_dssp CCEEEEE---SE-EEEEEEEEETTTTEEEEEEEE----EEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGG
T ss_pred cccEEEEEecCc-eEEEeeecccccCceeeeeee----eEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhh
Confidence 478999999884 777776654433333333323 22221 12233554 55667
Q ss_pred HHHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 326 VKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 326 ~~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
.+++.+++.+++++. |..|++.+|.++++ +.++++.|+.+|+.++
T Consensus 95 L~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 95 LPKVFEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCC
Confidence 778888877777765 78899999999984 7899999999999764
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.79 Score=61.88 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=59.5
Q ss_pred ceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccC
Q 000092 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQND 684 (2267)
Q Consensus 605 ~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~ 684 (2267)
.+.+.|.+||+...+.+.......-.. .........+...+.|+...+.+++ +-.+.-+..-+.++..
T Consensus 489 ~r~~~~~~ng~~~~v~v~d~~~~~~~~---------~~~~~~~~~V~Ap~~G~v~~~~V~~---Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 489 KRPFYLRVDGMPEEVVVEPLKEIVVGG---------RPRASAPGAVTSPMPGTVVKVKVKE---GDKVKAGDTVLVLEAM 556 (592)
T ss_pred cceEEEEecCceeeeeccCcccccccc---------cCCCCCCceEeCCCcEEEEEEEeCC---CCEECCCCEEEEEecc
Confidence 356677788888877775433211000 0001111223333455444443322 2222222222333333
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.-.+.|+||.+|+|.++++++||.|..||+|++||
T Consensus 557 Kme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 557 KMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred ccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 34567999999999999999999999999999986
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.52 Score=57.41 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=56.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++. +++. |...+...+|... .-+.+.+.+ +=...
T Consensus 100 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a-~eA~~ 178 (263)
T PRK07799 100 TKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITA-AEAKE 178 (263)
T ss_pred CCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHHH
Confidence 469999999999999999999999999999874 3332 2223445555322 112233333 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.+++++. ..+.+++|..
T Consensus 179 ~Glv~~vv~~~~-l~~~a~~~a~ 200 (263)
T PRK07799 179 IGLIGHVVPDGQ-ALDKALELAE 200 (263)
T ss_pred cCCccEecCcch-HHHHHHHHHH
Confidence 999999997653 3444555433
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.06 E-value=0.57 Score=56.96 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=57.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~e-A~~ 172 (259)
T PRK06494 94 DKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTARE-GLE 172 (259)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHH-HHH
Confidence 469999999999999999999999999999875333 2 2223444455332 11222333332 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.++++ .+..+.+++|..-
T Consensus 173 ~GLv~~vv~~-~~l~~~a~~~a~~ 195 (259)
T PRK06494 173 LGFVNEVVPA-GELLAAAERWADD 195 (259)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHH
Confidence 8999999974 4445555555443
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.5 Score=57.58 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=56.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+ +-...
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a-~eA~~ 181 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDA-ATALE 181 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCH-HHHHH
Confidence 46999999999999999999999999999986533 32 2223444555432 112233332 33457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 182 ~Glv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK09245 182 WGLVSRVVPAD-QLLPAARALA 202 (266)
T ss_pred cCCcceecCHH-HHHHHHHHHH
Confidence 99999999754 4444555543
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.62 Score=56.38 Aligned_cols=84 Identities=25% Similarity=0.255 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+...+.+.+ +..
T Consensus 88 ~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~e-A~~ 166 (251)
T PLN02600 88 SIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGARE-AAS 166 (251)
T ss_pred CCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 369999999999999999999999999999875332 2 2233555555322 11233343333 346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +.....++|
T Consensus 167 ~Glv~~vv~~~-~~~~~a~~~ 186 (251)
T PLN02600 167 MGLVNYCVPAG-EAYEKALEL 186 (251)
T ss_pred cCCCcEeeChh-HHHHHHHHH
Confidence 89999999754 344444444
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.55 Score=56.82 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. +...+-+.+|... .-+...+++.+ ...
T Consensus 97 ~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e-A~~ 175 (251)
T PRK06023 97 EKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEA-AQE 175 (251)
T ss_pred CCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHH-HHH
Confidence 469999999999999999999999999998875 3332 1123445555322 11223334333 456
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +....++++.
T Consensus 176 ~Glv~~vv~~~-~l~~~a~~~a 196 (251)
T PRK06023 176 AGLIWKIVDEE-AVEAETLKAA 196 (251)
T ss_pred cCCcceeeCHH-HHHHHHHHHH
Confidence 89999999754 3444444443
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.48 Score=57.92 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=55.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+. ++=...
T Consensus 108 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~-a~eA~~ 186 (272)
T PRK06210 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFY-AEEALR 186 (272)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccC-HHHHHH
Confidence 47999999999999999999999999999987543 21 2222444444322 01112222 233457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+.+|.
T Consensus 187 ~Glv~~vv~~-~~l~~~a~~~a 207 (272)
T PRK06210 187 LGLVNRVVPP-DELMERTLAYA 207 (272)
T ss_pred cCCcceecCH-HHHHHHHHHHH
Confidence 9999999975 44445555553
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=5.6 Score=48.80 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC--CCCchhhhh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG--FSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G--f~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.+++ ..+=+|+|.-.++ |..|..-.. .........++.++..+..|+|+.
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 112 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC 112 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67889999999999998875 4556777766542 766653110 011122345677888999999999
Q ss_pred EccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+.. ++. .|+ ++|.++++++.
T Consensus 113 v~--G~a~GgG~~Lala----cD~--~ia~~~a~f~~ 141 (269)
T PRK06127 113 IR--GYCIGGGMGIALA----CDI--RIAAEDSRFGI 141 (269)
T ss_pred EC--CEEecHHHHHHHh----CCE--EEeeCCCEeeC
Confidence 97 766665544 333 477 78888877766
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=6.4 Score=48.00 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh-------------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.++...+.+|+|.-.+ .|+.|..-.. .........++..+..+.+|+|+.
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999999875567777776443 4666653110 001112234677888999999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK08140 106 VN--GVAAGAGANLALA----CDI--VLAARSASFIQ 134 (262)
T ss_pred EC--CeeehhHHHHHHh----CCE--EEecCCCEEec
Confidence 96 6666654 44444 477 78887777664
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=88.68 E-value=7.1 Score=47.38 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++.++-..-..++++.++. ..+-+|+|.-.. .|+.|..-. ..........++..+..+..|+|+.|-
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 96 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE 96 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 47888999999999988765 467788886543 377665211 011122234566778889999999996
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. .++. .|+ ++|.++++++.
T Consensus 97 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 123 (251)
T PLN02600 97 --GAALGGGLELALS----CDL--RICGEEAVFGL 123 (251)
T ss_pred --CeecchhHHHHHh----CCE--EEeeCCCEEeC
Confidence 66666554 3444 477 78888887776
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.4 Score=58.25 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+...+|... .-+...+.+. -...
T Consensus 102 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~-eA~~ 180 (262)
T PRK07509 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAE-EALE 180 (262)
T ss_pred CCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHH-HHHH
Confidence 46999999999999999999999999999997533 22 2233444555432 1122233332 2447
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.++++..+....+.+-|.
T Consensus 181 ~Glv~~vv~~~~~~a~~~a~~l~ 203 (262)
T PRK07509 181 LGLVTHVSDDPLAAALALAREIA 203 (262)
T ss_pred cCChhhhhchHHHHHHHHHHHHH
Confidence 99999998654444444333333
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.62 Score=56.59 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccc----cccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGRE----VYSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~e----vy~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+...+|.. ..-+...+.+.+ ...
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~ 173 (258)
T PRK09076 95 RGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAAT-ALR 173 (258)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHH-HHH
Confidence 369999999999999999999999999999876433 2 223355555542 111223333322 457
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+.++
T Consensus 174 ~Glv~~vv~~~-~l~~~a~~~ 193 (258)
T PRK09076 174 IGLVEEVVEKG-EAREAALAL 193 (258)
T ss_pred CCCCceecCch-hHHHHHHHH
Confidence 89999999754 434444444
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=5.6 Score=48.60 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh-------h---chHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF-------E---GILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~-------~---gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.+........+++.++. ..+-+|+|.-.+ .|+.|..-.. . ........++..+..+..|+|+.|
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 109 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI 109 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57788888999999988875 456777776544 4887763110 0 111223456777888999999999
Q ss_pred ccCCcCCchhHhhhccccCCccceeecccccEEEeeC
Q 000092 2009 PMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2009 ~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
- |.+.||+..... ..|+ ++|.++++++.-+
T Consensus 110 ~--G~a~GgG~~lal---a~D~--~ia~~~a~f~~pe 139 (262)
T PRK06144 110 A--GACVGGGAAIAA---ACDL--RIATPSARFGFPI 139 (262)
T ss_pred C--CeeeehHHHHHH---hCCE--EEecCCCEeechh
Confidence 6 766665544332 2487 8888988887643
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=88.37 E-value=15 Score=45.59 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=57.0
Q ss_pred CccCHHHHHHHHHHHHHhcc------cCCcEEEEecCC--CCCCchhh-hh---------hchHHHHHHHHHHHh-----
Q 000092 1942 QVWFPDSATKTAQALMDFNR------EELPLFILANWR--GFSGGQRD-LF---------EGILQAGSTIVENLR----- 1998 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~------~~lPLv~l~d~~--Gf~~G~~~-e~---------~gilk~ga~iv~al~----- 1998 (2267)
-++.++......++++.+.+ ..+-+|+|.-.. .|+.|..- +. .....+...+.+.+.
T Consensus 38 Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (287)
T PRK08788 38 PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRG 117 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 47888889999999988764 456667776552 37766531 11 111122222232222
Q ss_pred -cCCCCEEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 1999 -TYKQPVFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1999 -~~~vP~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.+.+|+|+.|- |-+.||+ -.++.+ |+ ++|.++++++.
T Consensus 118 ~~~pkPvIAaV~--G~a~GgG~~Lalac----D~--ria~~~a~f~~ 156 (287)
T PRK08788 118 FGAGAISIALVQ--GDALGGGFEAALSH----HT--IIAERGAKMGF 156 (287)
T ss_pred cCCCCCEEEEEC--CeeehHHHHHHHhC----CE--EEecCCCEeeC
Confidence 67899999996 6665544 444443 76 77888777665
|
|
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.55 Score=52.96 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=34.4
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
|.++...-...|+||..|+|+++++++|+.|..||+|++|+
T Consensus 115 ~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 115 CIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 34444444567999999999999999999999999999985
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.92 Score=52.01 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCcchHHHHHHHHHHHHHHHcCC-CEEEEEcCCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceee
Q 000092 1619 GSFGPREDAFFLAVTDLACAKKL-PLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIA 1697 (2267)
Q Consensus 1619 GS~g~~~~~k~~ra~elA~~~~i-P~I~l~~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~ 1697 (2267)
|...+.....+.++.+.|.+.+. +++...+|.|+.+.-...+. +.+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~~~I~---------------------------~~i------ 54 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAAGNIV---------------------------QRI------ 54 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHHHHHH---------------------------HHH------
Confidence 67778888899999999998876 46666788887664221111 111
Q ss_pred eccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEEEc---CcccchhhhhhccCCeEEEecCCc
Q 000092 1698 HEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVT---GRTVGIGAYLARLGMRCIQRLDQP 1774 (2267)
Q Consensus 1698 ~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~vt---g~~~G~gAyl~~lgd~~I~~~~a~ 1774 (2267)
+ +..+|++++|. |.+...|++++.-||.++|.+++.
T Consensus 55 -----------------------------~------------~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~ 93 (172)
T cd07015 55 -----------------------------Q------------QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTS 93 (172)
T ss_pred -----------------------------H------------hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCE
Confidence 0 01259999999 999999999999999999999999
Q ss_pred ceecchH
Q 000092 1775 IILTGFS 1781 (2267)
Q Consensus 1775 i~ltGp~ 1781 (2267)
++..||-
T Consensus 94 iG~~~pi 100 (172)
T cd07015 94 IGACRPI 100 (172)
T ss_pred EEEcccc
Confidence 9999983
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.75 Score=49.97 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred CCceecCCCceeEEEEccCCCE-EcC--CCc-EEE--EEccccceeeecCCCcEE-EEeeCCCCccCCCCEEEEEecC
Q 000092 687 PSKLVAETPCKLLRYLVSDGSH-IDA--DTP-YAE--VEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~-V~~--G~~-l~~--iEaMKM~~~l~ap~~G~v-~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.+.||..|+|..+.-..-.. ++. |-. +.- +.+.|| .|.= +..+++||.|.+||+|++++.+
T Consensus 35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l--------~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeec--------CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 4688999999887763321111 111 111 111 122222 2332 3348999999999999999754
|
The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. |
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=6.1 Score=48.05 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhhh-h------c------hHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDLF-E------G------ILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e~-~------g------ilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++-.....++++.++. ..+-+|+|.-.++ |+.|..-.. . + ..+....++.++..+..|+|+
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 57889999999999998865 4556777755443 666653110 0 0 112234566788899999999
Q ss_pred EEccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.| |.-+++. .|+ ++|.++++++.
T Consensus 104 av~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 133 (255)
T PRK07260 104 CVD--GAVAGAAANMAVA----ADF--CIASTKTKFIQ 133 (255)
T ss_pred Eec--CeeehhhHHHHHh----CCE--EEEeCCCEEec
Confidence 997 66655 5544554 477 88888888775
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.74 Score=55.91 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |...+-..+|... .-+.+.+.+ +-...
T Consensus 92 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a-~eA~~ 170 (255)
T PRK08150 92 RVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDA-QEGER 170 (255)
T ss_pred CCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH-HHHHH
Confidence 369999999999999999999999999999875332 1 2223444455321 112233322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 171 ~Glv~~vv~~~-~l~~~a~~~a~~ 193 (255)
T PRK08150 171 LGLAQYLVPAG-EALDKAMELARR 193 (255)
T ss_pred cCCccEeeCch-HHHHHHHHHHHH
Confidence 99999999854 455555555443
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.66 Score=56.97 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=57.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecc-----hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTG-----FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltG-----p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.. ...+-+.+|... .-+.+.+.+.+ ..
T Consensus 113 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~ 191 (277)
T PRK08258 113 PQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEE-GE 191 (277)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HH
Confidence 469999999999999999999999999999864 44431 223555555422 11222222222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
.-|++|.++++ .+..+.+.+|..-
T Consensus 192 ~~Glv~~vv~~-~~l~~~a~~~a~~ 215 (277)
T PRK08258 192 RWGFFNRLVEP-EELLAEAQALARR 215 (277)
T ss_pred HcCCCcEecCH-HHHHHHHHHHHHH
Confidence 79999999974 4555666666443
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=0.51 Score=57.23 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=57.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+ . |..-+.+.+|... .-+...+.+ +-...
T Consensus 96 ~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a-~eA~~ 174 (259)
T PRK06688 96 PKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSA-EEALR 174 (259)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCH-HHHHH
Confidence 469999999999999999999999999998865433 2 2223444555322 111122222 22346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.++++ .+..+.+.+|..-+
T Consensus 175 ~Glv~~v~~~-~~l~~~a~~~a~~i 198 (259)
T PRK06688 175 IGLVNRVVPA-AELDAEADAQAAKL 198 (259)
T ss_pred cCCcceecCH-HHHHHHHHHHHHHH
Confidence 8999999974 44556666665443
|
|
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.76 Score=43.34 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.9
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
..|+||..|.|.++.+++|+.|++|++++.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999999999875
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.51 Score=57.62 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=57.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+++ . |...+.+.+|.... -+.+.+. ++=...
T Consensus 99 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~-a~eA~~ 177 (265)
T PLN02888 99 RKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLT-AETAER 177 (265)
T ss_pred CCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccC-HHHHHH
Confidence 469999999999999999999999999999875433 1 22335555565331 1112222 222347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+.+|..-
T Consensus 178 ~Glv~~vv~~~-~l~~~a~~~a~~ 200 (265)
T PLN02888 178 WGLVNHVVEES-ELLKKAREVAEA 200 (265)
T ss_pred cCCccEeeChH-HHHHHHHHHHHH
Confidence 99999999754 455555555443
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.58 Score=56.96 Aligned_cols=86 Identities=16% Similarity=0.044 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e-A~~ 172 (258)
T PRK06190 94 RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAAD-ALR 172 (258)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 46999999999999999999999999999987543 21 2223444555432 12223333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.+++++ +..+.+++|..
T Consensus 173 ~GLv~~vv~~~-~l~~~a~~~a~ 194 (258)
T PRK06190 173 AGLVTEVVPHD-ELLPRARRLAA 194 (258)
T ss_pred cCCCeEecCHh-HHHHHHHHHHH
Confidence 99999999743 44455555543
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.98 Score=48.46 Aligned_cols=106 Identities=25% Similarity=0.295 Sum_probs=61.2
Q ss_pred cEEEEEC----chHHHHHHHHHHHHcCCcccccccceeEEE-EEeccCCCCCChhhhhccEEE-EccCCCCCCCccCHHH
Q 000092 49 HSILIAN----NGMAAVKFIRSIRTWAYETFGTEKAILLVA-MATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANVQL 122 (2267)
Q Consensus 49 kkVLIan----~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~-~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~dvd~ 122 (2267)
|+|.|+| .+-.+.++++.+++.||+++..+..-..+. .-++.+.... -.-.|-++ .+|. .....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~---p~~iDlavv~~~~-------~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI---PEPIDLAVVCVPP-------DKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC---SST-SEEEE-S-H-------HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC---CCCCCEEEEEcCH-------HHHHH
Confidence 5788998 356799999999999998874333222221 1222222110 01233332 3322 23667
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHH
Q 000092 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATS 166 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~ea 166 (2267)
+++-|.+.++.+||--.| .++.++.+.++++|+.++||.---
T Consensus 71 ~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 71 IVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 788888889999997766 566778899999999999997543
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.51 Score=57.29 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=54.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-..+|... .-+.+.+.+ +=...
T Consensus 94 ~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a-~eA~~ 172 (257)
T PRK05862 94 RKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDA-AEAER 172 (257)
T ss_pred CCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH-HHHHH
Confidence 46999999999999999999999999999886533 22 2233444555422 111122222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 173 ~Glv~~vv~~~-~l~~~a~~~a 193 (257)
T PRK05862 173 AGLVSRVVPAD-KLLDEALAAA 193 (257)
T ss_pred cCCCCEeeCHh-HHHHHHHHHH
Confidence 89999999753 3444444443
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.95 Score=55.33 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++-.||++|+.+++. +++. |...+-+.+|... .-+...+. ++=...-
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~~ 182 (266)
T PRK08139 104 PQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFID-AATAREW 182 (266)
T ss_pred CCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccC-HHHHHHc
Confidence 369999999999999999999999999999865 3332 1112333444322 11222232 2334579
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~L 1828 (2267)
|++|.+++++ +..+.+.+|.
T Consensus 183 GLv~~vv~~~-~l~~~a~~~a 202 (266)
T PRK08139 183 GLVNRVVPAD-ALDAAVARLA 202 (266)
T ss_pred CCccEeeChh-HHHHHHHHHH
Confidence 9999999753 4444444443
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.82 Score=55.72 Aligned_cols=85 Identities=20% Similarity=0.074 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch------------HHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF------------SALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp------------~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+.-. .-+-..+|... .-+...+.+. -..
T Consensus 102 ~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~-eA~ 180 (262)
T PRK06144 102 RVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAE-EAL 180 (262)
T ss_pred CCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHH-HHH
Confidence 469999999999999999999999999999976554211 22344455332 1122233322 234
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.-|++|.++++ .+..+.+.+|.
T Consensus 181 ~~Glv~~vv~~-~~l~~~a~~~a 202 (262)
T PRK06144 181 AAGLVNEVVED-AALDARADALA 202 (262)
T ss_pred HcCCcCeecCH-HHHHHHHHHHH
Confidence 78999999975 44444444443
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.58 Score=56.75 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++-.||++|+.+++.+.+ . |...+-+.+|... .-+...+.+ +-...
T Consensus 93 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a-~eA~~ 171 (254)
T PRK08259 93 SKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDA-DEALA 171 (254)
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCH-HHHHH
Confidence 469999999999999999999999999999875432 1 2223444555432 111122222 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+++|.
T Consensus 172 ~Glv~~vv~~~-~l~~~a~~~a 192 (254)
T PRK08259 172 IGLANRVVPKG-QARAAAEELA 192 (254)
T ss_pred cCCCCEeeChh-HHHHHHHHHH
Confidence 99999999754 4455555554
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.91 Score=55.52 Aligned_cols=86 Identities=22% Similarity=0.184 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~e-A~~ 184 (268)
T PRK07327 106 DKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEE-AER 184 (268)
T ss_pred CCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHH-HHH
Confidence 4699999999999999999999999999998754 333 1122344444322 11122232222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 185 ~Glv~~vv~~-~~l~~~a~~~a~ 206 (268)
T PRK07327 185 IGLVSLAVDD-DELLPKALEVAE 206 (268)
T ss_pred cCCcceecCH-HHHHHHHHHHHH
Confidence 8999999974 444555555543
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=6.3 Score=47.99 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=63.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh--h-------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL--F-------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e--~-------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+....++..+..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 46788999999999998875 567777776654 277765211 0 11223344567788999999999996
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 104 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (258)
T PRK09076 104 --GYAMGGGLECALA----CDI--RIAEEQAQMAL 130 (258)
T ss_pred --CEEecHHHHHHHh----CCE--EEecCCCEeeC
Confidence 66666544 3443 476 77777777665
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.54 Score=57.19 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=55.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcc---ccccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGR---EVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~---evy~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++-.||++|+.+++.+.+ . |...+.++.|. +..-+...+. ++-+...
T Consensus 101 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l~l~g~~~~-a~eA~~~ 179 (260)
T PRK07827 101 PKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFG-AAEAARI 179 (260)
T ss_pred CCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHHHHHhCCccC-HHHHHHc
Confidence 369999999999999999999999999998875333 1 12223332221 1111222232 2334568
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.++++..+.+..+.+-+.-.|
T Consensus 180 Glv~~v~~~l~~~a~~~a~~la~~~ 204 (260)
T PRK07827 180 GLVTAAADDVDAAVAALLADLRRGS 204 (260)
T ss_pred CCcccchHHHHHHHHHHHHHHHhCC
Confidence 9999988654444444444444333
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.77 Score=55.85 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |..-+-+.+|... .-+.+.+.+.+ ...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 175 (260)
T PRK07657 97 PQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQE-AKE 175 (260)
T ss_pred CCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HHH
Confidence 4799999999999999999999999999988653 332 1223555555322 11222233333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 176 ~Glv~~vv~~-~~l~~~a~~~a~ 197 (260)
T PRK07657 176 IGLVEFVVPA-HLLEEKAIEIAE 197 (260)
T ss_pred cCCCCeecCH-HHHHHHHHHHHH
Confidence 8999999975 445555555543
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=0.76 Score=55.81 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~e-A~~~ 178 (256)
T PRK06143 100 PVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQ-ALAW 178 (256)
T ss_pred CCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHH-HHHC
Confidence 47999999999999999999999999999987533 21 1223444555422 11222233222 3478
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000092 1808 GVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
|++|.++++ .+....+.+|..
T Consensus 179 Glv~~vv~~-~~l~~~a~~~a~ 199 (256)
T PRK06143 179 GLVDRVVPL-AELDAAVERLAA 199 (256)
T ss_pred CCcCeecCH-HHHHHHHHHHHH
Confidence 999999974 444445555443
|
|
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.69 Score=52.19 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=34.7
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
|.++...-...|.||..|+|.+++|++||.|+.||+|++||
T Consensus 116 ~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 116 CIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 44444444567999999999999999999999999999985
|
The gene name is accB or fabE. |
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=0.78 Score=55.83 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=57.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~ 172 (261)
T PRK03580 94 DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEE-ALR 172 (261)
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHH-HHH
Confidence 46999999999999999999999999999886532 22 1223444455432 11222333333 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++. .+..+.+.+|..-
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~~ 195 (261)
T PRK03580 173 WGIVNRVVPQ-AELMDRARELAQQ 195 (261)
T ss_pred cCCCcEecCH-hHHHHHHHHHHHH
Confidence 8999999974 4555566665443
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=0.7 Score=56.73 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=56.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----c-hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----G-FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----G-p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++. | ...+-+.+|... .-+.+.+.+ +=..
T Consensus 109 ~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a-~eA~ 187 (276)
T PRK05864 109 HQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDA-EEAE 187 (276)
T ss_pred CCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCH-HHHH
Confidence 469999999999999999999999999998864 2333 1 123555556432 112233322 2234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.+++++ +..+.+.+|..
T Consensus 188 ~~Glv~~vv~~~-~l~~~a~~~a~ 210 (276)
T PRK05864 188 RIGLVSRQVPDE-QLLDTCYAIAA 210 (276)
T ss_pred HcCCcceeeCHH-HHHHHHHHHHH
Confidence 789999999754 44455555533
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=23 Score=45.13 Aligned_cols=94 Identities=13% Similarity=0.227 Sum_probs=60.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh--hh-----------chHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL--FE-----------GILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e--~~-----------gilk~ga~iv~al~~~~vP~i 2005 (2267)
-++.+.-.....++++.+++ ..+-+|+|.-.+ .|+.|..-. .. ...+....++..+..++.|+|
T Consensus 25 Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 25 NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57888999999999988875 456677777654 376665311 00 111122346677889999999
Q ss_pred EEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |.+.||+ -+++. .|+ ++|.++|+++.
T Consensus 105 AaVn--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 135 (342)
T PRK05617 105 ALMD--GIVMGGGVGISAH----GSH--RIVTERTKMAM 135 (342)
T ss_pred EEEc--CEEEccHhHHhhh----CCE--EEEcCCCEeeC
Confidence 9996 6666654 44443 366 66666665554
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=8.6 Score=46.85 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhhhh-----------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.+.......++++.+++ -.+-+|+|.-.++ |+.|..-.. .........++.++..+..|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998865 4566777765432 665532110 0111223456778889999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEeeC
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
- |-+.|| .-.++. .|+ ++|.++++++.-+
T Consensus 105 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~pe 134 (257)
T PRK06495 105 N--GPALGAGLGLVAS----CDI--IVASENAVFGLPE 134 (257)
T ss_pred C--CeeehhHHHHHHh----CCE--EEecCCCEeeChh
Confidence 7 666554 444444 477 7888888777643
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.7 Score=56.12 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=55.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|... .-+...+++. -...
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~-eA~~ 172 (256)
T TIGR03210 94 PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQ-EALA 172 (256)
T ss_pred CCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHH-HHHH
Confidence 369999999999999999999999999999865433 2 2223444555432 1111222222 2346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+.++.
T Consensus 173 ~Glv~~vv~~~-~l~~~a~~~a 193 (256)
T TIGR03210 173 MGLVNAVVPHD-QLDAEVQKWC 193 (256)
T ss_pred cCCceeeeCHH-HHHHHHHHHH
Confidence 89999999754 4444444443
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=8 Score=47.17 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=63.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh---------hch---HHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EGI---LQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~gi---lk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.+.......++++.++. ..+-+|+|.-.+ .|+.|..-.. ... .+....++.++..+..|+|+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR 105 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence 57889999999999998865 566777776544 3776643110 001 122345677888999999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (262)
T PRK05995 106 VH--GDAYAGGMGLVAA----CDI--AVAADHAVFCL 134 (262)
T ss_pred EC--CEEEhhHHHHHHh----CCE--EEeeCCCEEeC
Confidence 96 6666644 44444 476 77777777666
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=0.6 Score=56.74 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |...+...+|... .-+...+.+.+ ...
T Consensus 100 ~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 178 (260)
T PRK05980 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAER-ALE 178 (260)
T ss_pred CCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHH-HHH
Confidence 4699999999999999999999999999988753 222 2223444555432 11222333322 456
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+.+|.
T Consensus 179 ~Glv~~vv~~~-~l~~~a~~~a 199 (260)
T PRK05980 179 IGLVNAVVPHE-ELLPAARALA 199 (260)
T ss_pred cCCCCcccCHH-HHHHHHHHHH
Confidence 89999999754 4455555544
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=0.64 Score=57.83 Aligned_cols=86 Identities=20% Similarity=0.077 Sum_probs=54.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----c--h-HHHHHhhcccc----ccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----G--F-SALNKLLGREV----YSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----G--p-~al~~~lG~ev----y~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+- | + ..+-..+|... .-+...+.+.+ ...-|+
T Consensus 127 ~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~~~vG~~~A~~llltG~~i~a~e-A~~~GL 205 (302)
T PRK08272 127 HKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQ-AAEWGL 205 (302)
T ss_pred CCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHHHHHHHhhHHHHHHHHHcCCccCHHH-HHHcCC
Confidence 4799999999999999999999999999998754321 1 1 11222233221 11222233332 457999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
+|.++++ .+....+.++..
T Consensus 206 v~~vv~~-~~l~~~a~~la~ 224 (302)
T PRK08272 206 AVEAVPP-EELDERTERLVE 224 (302)
T ss_pred CceecCH-HHHHHHHHHHHH
Confidence 9999974 444445555443
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.7 Score=56.04 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +. |...+-+.+|... .-+.+.+.+ +=...
T Consensus 91 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a-~eA~~ 169 (254)
T PRK08252 91 RKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTA-ERAHE 169 (254)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCH-HHHHH
Confidence 47999999999999999999999999999987533 32 1222334444322 112223333 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
.|++|.+++++ +..+.+.++.
T Consensus 170 ~Glv~~vv~~~-~l~~~a~~~a 190 (254)
T PRK08252 170 LGLVNRLTEPG-QALDAALELA 190 (254)
T ss_pred cCCcceecCcc-hHHHHHHHHH
Confidence 89999999754 3444444443
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.7 Score=57.40 Aligned_cols=86 Identities=15% Similarity=-0.048 Sum_probs=55.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce--------ecchHHHHHhhccc----cccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII--------LTGFSALNKLLGRE----VYSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~--------ltGp~al~~~lG~e----vy~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +......-..+|.. ..-+.+.+.+.+ ...-|+
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~~~~vG~~~A~~llltg~~i~A~e-A~~~GL 190 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQ-AAEAEL 190 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHHHHHhhHHHHHHHHHcCCccCHHH-HHHcCC
Confidence 47999999999999999999999999999986533 22111111123332 111223333333 457999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
++.++++ .+....+.+|..
T Consensus 191 V~~vv~~-~~l~~~a~~~a~ 209 (298)
T PRK12478 191 INEAVPF-ERLEARVAEVAT 209 (298)
T ss_pred cceecCH-HHHHHHHHHHHH
Confidence 9999974 445555555544
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.98 E-value=6 Score=48.08 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh---------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF---------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~---------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
.++.++......++++.+.+ ..+-+|+|.-.+ .|+.|..= +. .........++.++..+.+|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57889999999999988864 567777776543 26666531 10 01223345677889999999999997
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+. +++. .|+ ++|.++++++.
T Consensus 103 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (257)
T PRK07658 103 --GAALGGGLELAMS----CHI--RFATESAKLGL 129 (257)
T ss_pred --CeeeeHHHHHHHh----CCE--EEecCCCcccC
Confidence 66666543 3443 366 67776666554
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.75 Score=55.67 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecch-HHHHHhhcccc----ccccccCCccccccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGF-SALNKLLGREV----YSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltGp-~al~~~lG~ev----y~s~~~lGG~~i~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++. +++.|. ..+...+|... .-+...+.+. =...-|+
T Consensus 94 ~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~-eA~~~Gl 172 (249)
T PRK07938 94 AVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAA-ELHHFGS 172 (249)
T ss_pred CCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCcCCHH-HHHHCCC
Confidence 369999999999999999999999999998864 333332 22334444322 1122233222 2347999
Q ss_pred eEEEecCcHHHHHHHHHHH
Q 000092 1810 VHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~L 1828 (2267)
+|.++++ .+..+.+.+|.
T Consensus 173 v~~vv~~-~~l~~~a~~~a 190 (249)
T PRK07938 173 VEEVVPR-DQLDEAALEVA 190 (249)
T ss_pred ccEEeCH-HHHHHHHHHHH
Confidence 9999974 44455555554
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=6.2 Score=48.39 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-----------hhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-----------FEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-----------~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.+.-.....++++.++. ..+-+|+|.-.+ .|+.|..-. ..........++..+..+..|+|+.|
T Consensus 34 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 113 (268)
T PRK07327 34 NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI 113 (268)
T ss_pred CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57888889999999988865 456677775543 366665311 01112233456777888999999999
Q ss_pred ccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||++ +++. .|+ ++|.++++++.
T Consensus 114 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 141 (268)
T PRK07327 114 H--GPAVGAGLVAALL----ADI--SIAAKDARIID 141 (268)
T ss_pred c--CeeeehhhHHHHh----CCE--EEecCCCEEeC
Confidence 6 66666544 4444 366 77777777664
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=9.1 Score=46.65 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-----------hhchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-----------FEGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-----------~~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++.+.-.....++++.+++ ..+-+|+|.-.+ .|+.|..= + ..........++..+..+.+|+|+.
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAa 104 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAA 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57888999999999998875 456667775433 36666521 0 0111233455677888999999999
Q ss_pred EccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.| |...++.+ |+ ++|.++|+++.
T Consensus 105 v~--G~a~GgG~~lala~----D~--~ia~~~a~f~~ 133 (260)
T PRK07511 105 VE--GAAAGAGFSLALAC----DL--LVAARDAKFVM 133 (260)
T ss_pred EC--CeeehHHHHHHHhC----CE--EEeeCCCEEec
Confidence 97 55555 55445443 66 77777766665
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=86.74 E-value=0.78 Score=55.74 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=55.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |..-+.+.+|... .-+...+.+ +=...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a-~eA~~ 175 (260)
T PRK05809 97 DKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINA-EEALR 175 (260)
T ss_pred CCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCH-HHHHH
Confidence 3699999999999999999999999999988653 332 1223445556322 112223322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+.++.
T Consensus 176 ~Glv~~vv~~-~~l~~~a~~~a 196 (260)
T PRK05809 176 IGLVNKVVEP-EKLMEEAKALA 196 (260)
T ss_pred cCCCCcccCh-HHHHHHHHHHH
Confidence 8999999974 34444444443
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=8.3 Score=47.03 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=63.8
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhh----------hhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.+.......++++.+....+-+|+|.-.+ .|+.|..-. ..........++.++..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~- 106 (260)
T PRK07659 28 NALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH- 106 (260)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec-
Confidence 57889999999999998855566777776544 377764211 111223345567778889999999996
Q ss_pred CCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+..... ..|+ ++|.++++++.
T Consensus 107 -G~a~GgG~~lal---acD~--ria~~~a~f~~ 133 (260)
T PRK07659 107 -GPAAGLGLSIAL---TADY--VIADISAKLAM 133 (260)
T ss_pred -CceecHHHHHHH---hCCE--EEEcCCCEEcC
Confidence 666665543332 2477 88888877665
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=86.71 E-value=0.92 Score=56.09 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=57.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+.+ ...
T Consensus 121 pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e-A~~ 199 (287)
T PRK08788 121 GAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE-LHD 199 (287)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHH
Confidence 46999999999999999999999999999987533 22 1223444555432 11223333333 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 200 ~GLV~~vv~~~-el~~~a~~~a~~ 222 (287)
T PRK08788 200 MGLVDVLVEDG-QGEAAVRTFIRK 222 (287)
T ss_pred CCCCcEecCch-HHHHHHHHHHHH
Confidence 89999999754 444555555443
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=86.69 E-value=7.7 Score=46.31 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=60.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh-hhh--------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR-DLF--------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~-~e~--------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
-++.++....+.++++.++. -++-+|+|.-.++ |+.|.. .+. ....+....++.++..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~- 107 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAIT- 107 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc-
Confidence 47788889999999988765 6777777765432 665543 110 11122334677788999999999997
Q ss_pred CCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.| |.-+++.+ |+ ++|.++++++.
T Consensus 108 -G~a~GgG~~lalac----D~--ria~~~a~f~~ 134 (222)
T PRK05869 108 -GYALGAGLTLALAA----DW--RVSGDNVKFGA 134 (222)
T ss_pred -CEeecHHHHHHHhC----CE--EEecCCCEEcC
Confidence 66655 44444444 65 66666666554
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=86.68 E-value=24 Score=45.94 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hh----hc-------hHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LF----EG-------ILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~----~g-------ilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++..+......++++.++. ..+-+|+|.-.+ .|..|..- .. .+ ..+....+...+..+..|+|+
T Consensus 64 NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA 143 (407)
T PLN02851 64 NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVA 143 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57899999999999998765 577777775433 36655421 11 00 111223455567789999999
Q ss_pred EEccCCcCCchh-Hhhhcccc---CCccceeecccccEEEeeCccch
Q 000092 2007 YIPMMAELRGGA-WVVVDSRI---NSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~---n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
.|- |-+.||+ .+++.+.+ ..+. .|+.|...+|+...-|+
T Consensus 144 ~v~--G~amGGG~gLal~~D~rVate~a--~famPE~~iGl~PdvG~ 186 (407)
T PLN02851 144 IMD--GITMGCGAGISIPGMFRVVTDKT--VFAHPEVQMGFHPDAGA 186 (407)
T ss_pred EEc--CEEeeHHHHHHHhCCEEEEeCCc--eEecchhccCCCCCccH
Confidence 996 6666654 44444321 1222 45556666666543333
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=25 Score=42.60 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhh----hhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDL----FEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e----~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
..++++......++++.++...+-+|+|.-.+ .|+.|..-. ..........++..+..+..|+|+.|- |.+.|
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~--G~a~G 99 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAIN--GPAIG 99 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEec--Ccccc
Confidence 57889999999999988876567677775433 366665311 112223345677788899999999996 66666
Q ss_pred hh-HhhhccccCCccceeecccccEEEe
Q 000092 2017 GA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2017 Ga-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+ ..++. .|+ ++|.++++++.
T Consensus 100 gG~~lal~----cD~--~ia~~~a~f~~ 121 (243)
T PRK07854 100 AGLQLAMA----CDL--RVVAPEAYFQF 121 (243)
T ss_pred cHHHHHHh----CCE--EEEcCCCEEec
Confidence 54 44444 477 77878777765
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=0.72 Score=57.22 Aligned_cols=84 Identities=18% Similarity=0.109 Sum_probs=53.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c----chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T----GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t----Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ . |...+-+.+|.... -+.+.+.+. -...
T Consensus 113 pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~-eA~~ 191 (296)
T PRK08260 113 LKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQ-EALD 191 (296)
T ss_pred CCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHH-HHHH
Confidence 479999999999999999999999999999875432 1 12234444454221 011122222 2347
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +....+.+|
T Consensus 192 ~GLv~~vv~~~-~l~~~a~~~ 211 (296)
T PRK08260 192 GGLVRSVHPPD-ELLPAARAL 211 (296)
T ss_pred CCCceeecCHH-HHHHHHHHH
Confidence 99999999744 444444444
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=7.3 Score=47.46 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..++.++......++++.++. ..+-+|+|.-.+ .|+.|..=. .....+....++..+..+.+|+|+.|
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 28 LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 357889999999999998864 566677776654 488775311 01112233456778889999999999
Q ss_pred ccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 108 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 135 (256)
T PRK06143 108 P--GWCLGGGLELAAA----CDL--RIAAHDAQFGM 135 (256)
T ss_pred C--CEEeehhHHHHHh----CCE--EEecCCCEEeC
Confidence 6 6666654 44444 366 66666666655
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=0.88 Score=56.26 Aligned_cols=88 Identities=19% Similarity=0.094 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceecchH--HHHHhhcccc----ccccccCCccccccccC
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILTGFS--ALNKLLGREV----YSSHMQLGGPKIMATNG 1808 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~ltGp~--al~~~lG~ev----y~s~~~lGG~~i~~~nG 1808 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++.|.. .+-..+|... .-+.+.+.+ +-...-|
T Consensus 118 pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~llltG~~i~A-~eA~~~G 196 (288)
T PRK08290 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFTGDRLTA-DEAHRLG 196 (288)
T ss_pred CCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHcCCCCCH-HHHHHCC
Confidence 469999999999999999999999999998864 5554321 1233445322 112222222 2245789
Q ss_pred ceEEEecCcHHHHHHHHHHHhcC
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
++|.++++ .+..+.+++|..-+
T Consensus 197 LV~~vv~~-~~l~~~a~~~a~~l 218 (288)
T PRK08290 197 MVNRVVPR-DELEAETLELARRI 218 (288)
T ss_pred CccEeeCH-HHHHHHHHHHHHHH
Confidence 99999975 45556666665444
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.9 Score=55.10 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+ ++. |..-+-..+|... .-+...+.+.+ ...
T Consensus 94 ~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e-A~~ 172 (257)
T PRK07658 94 SKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAE-ALK 172 (257)
T ss_pred CCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHH-HHH
Confidence 4699999999999999999999999999988653 332 1222444455432 11223333332 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.|++|.+++. .+..+.++++..
T Consensus 173 ~Glv~~vv~~-~~l~~~a~~~a~ 194 (257)
T PRK07658 173 WGLVNGVFPE-ETLLDDAKKLAK 194 (257)
T ss_pred cCCcCeecCh-hHHHHHHHHHHH
Confidence 9999999974 444445555443
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.5 Score=59.19 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=59.9
Q ss_pred ceeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEE------EEEecCCceEEEeCCceEEEEeeecccceEEEEcCce
Q 000092 605 NSQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAE------IHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678 (2267)
Q Consensus 605 ~~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~------v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t 678 (2267)
...+.+.+||+.|.|++...+... .+........ ......+.+..-+.|....+.+++ +-.+..+..-
T Consensus 472 ~~~~~~~vnG~~~~V~v~d~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~---Gd~V~~G~~l 545 (582)
T TIGR01108 472 SGSYTVEVEGKAFVVKVSPGGDVS---QITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSE---GQTVAEGEVL 545 (582)
T ss_pred ceEEEEEECCEEEEEEEcCCcccc---ccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCC---CCEECCCCEE
Confidence 456888899999999987544221 1110000000 000112233333455544444432 1222223333
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPY 715 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l 715 (2267)
+.++...-...|.||.+|+|.+++|++||.|+.||+|
T Consensus 546 ~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 546 LILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 3444444567899999999999999999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=9 Score=46.48 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=62.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-------hch---HHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------EGI---LQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-------~gi---lk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.++. .++-+|+|.-.+ .|+.|..-.. ... .+....++..+..+++|+|+.|-
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57889999999999998865 456667776533 4776654111 011 12234567788899999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 103 --G~a~GgG~~Lal~----cD~--ria~~~a~f~~ 129 (249)
T PRK07938 103 --GFCLGGGIGLVGN----ADV--IVASDDATFGL 129 (249)
T ss_pred --CEEeehHHHHHHh----CCE--EEEeCCCEeeC
Confidence 6666654 44444 376 77777777766
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=85.95 E-value=0.88 Score=55.81 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|.-++..||++|+.+++.+.+. |...+-..+|... .-+...+.+.+ ...
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~e-A~~ 185 (273)
T PRK07396 107 PKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQE-ALD 185 (273)
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999764442 1223444455432 11222222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.++++ .+..+.+.+|.
T Consensus 186 ~GLv~~vv~~-~~l~~~a~~~a 206 (273)
T PRK07396 186 MGLVNTVVPL-ADLEKETVRWC 206 (273)
T ss_pred cCCcCeecCH-HHHHHHHHHHH
Confidence 8999999974 44545555543
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=8.5 Score=46.91 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC--CCCchhh-h--------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG--FSGGQRD-L--------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G--f~~G~~~-e--------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++..+-.....++++.+.+ ..+-+|+|.-.++ |+.|..- + ..........++.++..+..|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 57888999999999988765 5677888877664 7777531 1 011222345677888899999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 --G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 132 (260)
T PRK07657 106 --GIALGGGLELALA----CDF--RIAAESASLGL 132 (260)
T ss_pred --CEeechHHHHHHh----CCE--EEeeCCCEEcC
Confidence 6666654 44444 366 67776666554
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=0.8 Score=55.80 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=48.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec---chHHHHHhhccccc----cccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT---GFSALNKLLGREVY----SSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt---Gp~al~~~lG~evy----~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. |...+-..+|.... -+...+.+. -...-
T Consensus 100 ~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~lll~g~~~~a~-eA~~~ 178 (262)
T PRK07468 100 PKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVARMGEANARRVFMSARLFDAE-EAVRL 178 (262)
T ss_pred CCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhhccHHHHHHHHHhCCccCHH-HHHHc
Confidence 469999999999999999999999999999865 3332 11111122343220 011122222 23479
Q ss_pred CceEEEecCc
Q 000092 1808 GVVHLTVSDD 1817 (2267)
Q Consensus 1808 Gv~d~~v~dd 1817 (2267)
|++|.+++++
T Consensus 179 Glv~~v~~~~ 188 (262)
T PRK07468 179 GLLSRVVPAE 188 (262)
T ss_pred CCcceecCHH
Confidence 9999999754
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=85.90 E-value=6.6 Score=48.12 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h--------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F--------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~--------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . ....+...+++..+..+..|+|+.|-
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 33 NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999988764 456666665433 377665311 0 11122334577788899999999996
Q ss_pred cCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+.. ++. .|+ ++|.++++++.
T Consensus 113 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (266)
T PRK08139 113 --GIATAAGCQLVAS----CDL--AVAADTARFAV 139 (266)
T ss_pred --ceeeHHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 767665543 444 366 77777777665
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=9 Score=46.85 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhccc-C-CcEEEEecCC-CCCCchhh-hh--------------hchHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNRE-E-LPLFILANWR-GFSGGQRD-LF--------------EGILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~-~-lPLv~l~d~~-Gf~~G~~~-e~--------------~gilk~ga~iv~al~~~~vP 2003 (2267)
.++.++-.....++++.+... . +-+|+|.-.+ .|+.|..= +. .........++.++..+.+|
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 26 NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 678899999999999988753 3 6666665543 36666431 10 01112234567788999999
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccccEEEee
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
+|+.|- |-+.||+..... ..|+ ++|.++++++..
T Consensus 106 vIaav~--G~a~GgG~~lal---acD~--~ia~~~a~f~~~ 139 (266)
T PRK05981 106 IVTAVN--GPAAGVGMSFAL---MGDL--ILCARSAYFLQA 139 (266)
T ss_pred EEEEEC--CEeehHHHHHHH---hCCE--EEecCCCEEech
Confidence 999996 777665544332 2487 899988887743
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=85.78 E-value=7.6 Score=42.69 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=68.8
Q ss_pred CcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccc
Q 000092 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ 310 (2267)
Q Consensus 231 yPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q 310 (2267)
-|+.|||....-.--=.++.+.++|. ......+..++++.+.++-..|+.+-++. |+++... ..+..
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~----~~~~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s-----~Y~~~- 68 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLI----GFGSLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGS-----PYRGD- 68 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhcc----ccCCCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEe-----ecCCC-
Confidence 48999999865444334666666655 22223345689999999877777776653 5666542 11111
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHH-HcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 311 KIIEEGPITVAPLETVKKLEQAARRLAK-CVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 311 KiieeaPa~~l~~e~~~eL~~~A~rla~-aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
+....+++. .+.+.+.++ .-..-.+..+|+=++. +|+.+++|+|+=
T Consensus 69 ------~~~~~~~~~----~~~~~~~~~~~~~~p~~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 69 ------WDLEPDPDV----VAFAIQALAAAWTLPPAYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred ------cccCCCHHH----HHHHHHHHHhcccCCCeEEEEEEEeC-CCCEEEEEecCc
Confidence 111123333 333344444 2333477889998884 789999999994
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=12 Score=45.51 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=61.9
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hh-----chHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE-----GILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~-----gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
...+.+.......++++.+++ ..+-+|+|.-.+ .|+.|..-. .. ........++..+..+.+|+|+.|-
T Consensus 23 ~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 100 (255)
T PRK09674 23 RNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVN-- 100 (255)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 367889999999999998865 466777776543 267665311 00 1112234567778899999999996
Q ss_pred CcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.|| .-.++.+ |+ ++|.++++++.
T Consensus 101 G~a~GgG~~lalac----D~--~ia~~~a~f~~ 127 (255)
T PRK09674 101 GYALGAGCELALLC----DI--VIAGENARFGL 127 (255)
T ss_pred CEeehHHHHHHHhC----CE--EEecCCCEEeC
Confidence 666665 4444443 66 67776666554
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=1.3 Score=53.93 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=53.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++-.||++|+.+++.+ ++. |...+-+.+|... .-+...+.+.+ ....
T Consensus 99 ~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a~e-A~~~ 177 (262)
T PRK05995 99 PKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAE-ALRL 177 (262)
T ss_pred CCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCHHH-HHHc
Confidence 4699999999999999999999999999988653 332 2222344455433 11222222222 3468
Q ss_pred CceEEEecCcHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~ 1827 (2267)
|++|.+++++ +....+.+|
T Consensus 178 Glv~~vv~~~-~l~~~a~~~ 196 (262)
T PRK05995 178 GLVHEVVPAE-ALDAKVDEL 196 (262)
T ss_pred CCCCeecCHH-HHHHHHHHH
Confidence 9999999643 344444444
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=29 Score=42.39 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=60.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h------hhchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L------FEGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e------~~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..= + .....+....++..+..+..|+|+.|- |
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~--G 107 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVN--G 107 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc--c
Confidence 57889999999999998864 566777776543 36766531 1 011122344567788899999999997 6
Q ss_pred cCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.+.|| .-+++.+ |+ ++|.++++++.
T Consensus 108 ~a~GgG~~lalac----D~--ria~~~a~f~~ 133 (261)
T PRK08138 108 YALGGGCELAMHA----DI--IVAGESASFGQ 133 (261)
T ss_pred EEEcHHHHHHHhC----CE--EEecCCCEeeC
Confidence 66554 4444443 55 56655555543
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=7.6 Score=48.95 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=79.1
Q ss_pred cEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcC-CchhHhhhccccCCccceeecccccEEEe
Q 000092 1965 PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAEL-RGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1965 PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~-~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-||.-.|+||-+... .+ ..+..+..+.+.+.|+++++- +-+ -||-|+++. +|. +||.|.+.+|.
T Consensus 125 aVvLridSpGG~v~~---s~----~a~~~l~~lr~~~kpVva~v~--~~AASggY~iAsa----AD~--I~A~P~a~vGS 189 (330)
T PRK11778 125 EVLLRLESPGGVVHG---YG----LAASQLQRLRDAGIPLTVAVD--KVAASGGYMMACV----ADK--IIAAPFAIVGS 189 (330)
T ss_pred eEEEEEeCCCCchhH---HH----HHHHHHHHHHhcCCCEEEEEC--CchhhHHHHHHHh----CCE--EEECCCCeEEe
Confidence 489999999933221 11 123335567778899999885 333 455555554 365 99999999988
Q ss_pred eCccchhhhhcchhhhHHHhhcchHHHHHHHH-HHHHhh---cCCCHHHHHHHHHHHHHHH-------Hhccc--hhhHH
Q 000092 2044 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMA-KLQEAK---NNRTLAMVESLQQQIKARE-------KQLLP--TYTQV 2110 (2267)
Q Consensus 2044 l~pegav~I~~r~~~~~~~m~r~d~~~~~l~~-~l~~~~---~~~~~~~~~~~~~~i~~r~-------~~l~p--~y~~~ 2110 (2267)
+|.-+. . +--. +.+.+++=...-++. +.++.. ...++++++.++..+.... .+-.| -..++
T Consensus 190 IGVi~~--~-~~~~---~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~v 263 (330)
T PRK11778 190 IGVVAQ--I-PNFH---RLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKV 263 (330)
T ss_pred eeeeee--c-cCHH---HHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHH
Confidence 887332 1 1111 111111100000000 000000 1235566666665554310 00111 01122
Q ss_pred HHHhHhhhCcHHHHHHcCCcccccCccch
Q 000092 2111 ATKFAELHDTSLRMAAKGVIKEVVDWDKS 2139 (2267)
Q Consensus 2111 a~~fadlhdt~~rm~~~G~Id~ii~~~~~ 2139 (2267)
| .-.+-++..+.+.|+||+|-...+.
T Consensus 264 a---~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 264 A---TGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred H---hCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 2 2246788999999999999876554
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=27 Score=42.63 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchh-hh-h-----hchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQR-DL-F-----EGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~-~e-~-----~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
.++.++....+.++++.++. ..+-+|+|.-.+ .|+.|.. .+ . .........++..+..+..|+|+.|- |
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~--G 103 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVA--G 103 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc--c
Confidence 57889999999999988864 466678887654 3666653 11 0 01112233456778889999999997 6
Q ss_pred cCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.|| .-+++.+ |+ ++|.++++++.
T Consensus 104 ~a~GgG~~lalac----D~--~ia~~~a~f~~ 129 (257)
T PRK05862 104 YALGGGCELAMMC----DI--IIAADTAKFGQ 129 (257)
T ss_pred EEeHHHHHHHHHC----CE--EEEeCCCEEeC
Confidence 66665 4444443 66 77777766655
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=12 Score=45.78 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=61.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h------h--c---hHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F------E--G---ILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~------~--g---ilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..-. . . . ..+....++.++..++.|+|+.
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR 106 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47889999999999998865 456667776543 377775311 0 0 0 1122344677889999999999
Q ss_pred EccCCcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+.. ++. .|+ ++|.++++++.
T Consensus 107 v~--G~a~GgG~~lala----~D~--ria~~~a~f~~ 135 (262)
T PRK07468 107 IQ--GQAFGGGVGLISV----CDV--AIAVSGARFGL 135 (262)
T ss_pred EC--CEEEhHHHHHHHh----CCE--EEEeCCCEEeC
Confidence 96 666665443 343 366 67777666554
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=0.82 Score=55.69 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=53.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+. +. |...+-+.+|... .-+...+.+. =...
T Consensus 96 ~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~-eA~~ 174 (261)
T PRK11423 96 PKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQ-RALA 174 (261)
T ss_pred CCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHH-HHHH
Confidence 46999999999999999999999999999987643 22 2222333444322 1111222222 2356
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +....++++
T Consensus 175 ~GLv~~vv~~~-~l~~~a~~~ 194 (261)
T PRK11423 175 VGILNHVVEVE-ELEDFTLQM 194 (261)
T ss_pred cCCcCcccCHH-HHHHHHHHH
Confidence 89999999743 444444444
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.1 Score=54.03 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH-----------HHHHhhcccc----ccccccCCcccccccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS-----------ALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~-----------al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
-|.|+.+-|-++|||.-|+.+||++||.+++.+++..++ =+-...|... .-+-.- =|++-..+-
T Consensus 128 KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~-~~AqeA~~~ 206 (290)
T KOG1680|consen 128 KPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRR-LGAQEAKKI 206 (290)
T ss_pred cceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCc-ccHHHHHhC
Confidence 499999999999999999999999999999987776543 1111122110 000000 012222368
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
|++..|++ ..+++....+|..-+-+
T Consensus 207 GlVn~Vvp-~~~~l~eAv~l~~~Ia~ 231 (290)
T KOG1680|consen 207 GLVNKVVP-SGDALGEAVKLAEQIAK 231 (290)
T ss_pred CceeEeec-chhHHHHHHHHHHHHHh
Confidence 99999997 45577777777655543
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=14 Score=45.50 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=62.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-------------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-------------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-------------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++.......+++.++. ..+-+|+|.-.+ .|+.|..-.. .........++.++..+.+|+|+
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA 118 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57888889999999988864 566677776543 3666543110 01112234677888999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ -+++. .|+ ++|.++++++.
T Consensus 119 aV~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 148 (277)
T PRK08258 119 AVD--GVCAGAGAILAMA----SDL--RLGTPSAKTAF 148 (277)
T ss_pred EEC--CeeehHHHHHHHh----CCE--EEecCCCEEec
Confidence 996 6666654 44444 376 77878777766
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=27 Score=42.56 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h------hchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F------EGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~------~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.+.. ..+-+|+|...+ .|+.|..-. . .........++..+..+..|+|+.|-
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-- 104 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN-- 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC--
Confidence 57888999999999988875 467778886544 366665311 0 11234456677888899999999997
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 105 G~a~GgG~~lal~----cD~--ria~~~a~f~~ 131 (259)
T PRK06688 105 GPAVGVGVSLALA----CDL--VYASESAKFSL 131 (259)
T ss_pred CeeecHHHHHHHh----CCE--EEecCCCEecC
Confidence 6666654 44444 366 67776666655
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=85.13 E-value=32 Score=44.51 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h----hch-------HHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F----EGI-------LQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~----~gi-------lk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++..+-...+.++++.+.. -.+-+|+|.-.+ .|..|..-- . .+. .+..-.+...+..+..|+|+
T Consensus 31 NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa 110 (381)
T PLN02988 31 NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVS 110 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 57888899999999988754 566777776544 477664211 1 110 11111234567889999999
Q ss_pred EEccCCcCCch-hHhhhccccCCccceeecccccEEE
Q 000092 2007 YIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGN 2042 (2267)
Q Consensus 2007 vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~g 2042 (2267)
.|- |-+.|| ..+++.+ |+ .+|.++++++
T Consensus 111 ~v~--G~a~GGG~~Lal~~----D~--rvate~a~f~ 139 (381)
T PLN02988 111 ILN--GIVMGGGAGVSVHG----RF--RIATENTVFA 139 (381)
T ss_pred Eec--CeEeehhhHHhhcC----Ce--EEEcCCcEEe
Confidence 986 666664 4444443 44 4555544443
|
|
| >PF13437 HlyD_3: HlyD family secretion protein | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.1 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.5
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 726 ~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
+|+||.+|+|..+ +++|+.|.+|++|+.|...+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 35 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTDD 35 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccce
Confidence 4899999999988 999999999999999987543
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=84.85 E-value=9.8 Score=46.59 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh---------hch---HHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------EGI---LQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~---------~gi---lk~ga~iv~al~~~~vP~i~v 2007 (2267)
-++.+.......++++.++. ..+=+|+|.-.+ .|+.|..-.. ... .+....++..+..+..|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (265)
T PRK05674 28 NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV 107 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47888889999999998865 345566665543 3666652110 001 122345777888999999999
Q ss_pred EccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.|| ..+++. .|+ ++|.++++++.
T Consensus 108 V~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 136 (265)
T PRK05674 108 VQ--GAAFGGALGLISC----CDM--AIGADDAQFCL 136 (265)
T ss_pred Ec--CEEEechhhHhhh----cCE--EEEeCCCEEeC
Confidence 97 666554 444444 476 77777777766
|
|
| >PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry | Back alignment and domain information |
|---|
Probab=84.82 E-value=0.56 Score=57.61 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=23.1
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.+|.++.+|+|+.+ |++|+.|++||+|++|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 03678999999999 9999999999999999875
|
; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B. |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=84.41 E-value=2.7 Score=49.73 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=34.2
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecch
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp 1780 (2267)
.|+|+++.|.|.|+|-+++..||++++.+++.+...|.
T Consensus 71 kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv 108 (211)
T cd07019 71 KPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGI 108 (211)
T ss_pred CCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEE
Confidence 49999999999999999999999999999987766663
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=14 Score=44.74 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh-hh-h---c---hHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD-LF-E---G---ILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~-e~-~---g---ilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..++.+.......++++.++. ..+-+|+|.-.++ |+.|..= +. . + .......++..+..+++|+|+.|-
T Consensus 27 ~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 105 (251)
T PRK06023 27 KNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD- 105 (251)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC-
Confidence 368899999999999998875 4567777765543 6666531 11 0 0 112234567788999999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ -+++. .|+ ++|.++++++.
T Consensus 106 -G~a~GgG~~la~a----cD~--ria~~~a~f~~ 132 (251)
T PRK06023 106 -GLAIGIGTTIHLH----CDL--TFASPRSLFRT 132 (251)
T ss_pred -CceecHHHHHHHh----CCE--EEEeCCCEecC
Confidence 6666654 44444 366 77777776654
|
|
| >cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=84.00 E-value=2 Score=53.32 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=39.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc--ccceeeecCCCcEEEEe
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM--KMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM--KM~~~l~ap~~G~v~~i 738 (2267)
..++||-+| ++...++.|+.|++||++++|--. .-..+++||.+|+|-.+
T Consensus 232 ~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 232 DWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 358999998 666889999999999999999432 11345899999998765
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=83.93 E-value=12 Score=45.74 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh---------hch-HHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF---------EGI-LQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~---------~gi-lk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++.++......++++.++. ..+-+|+|.-.+ .|+.|..-.. .+. ......++..+..+..|+|+.|
T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (259)
T TIGR01929 25 NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMV 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57888999999999988765 456677776654 3777763110 000 0012345667888999999999
Q ss_pred ccCCcCCchhHh-hhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRGGAWV-VVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |-+.||+.. ++. .|+ ++|.++++++.-
T Consensus 105 ~--G~a~GgG~~lala----cD~--~ia~~~a~f~~p 133 (259)
T TIGR01929 105 N--GYAIGGGHVLHVV----CDL--TIAAENARFGQT 133 (259)
T ss_pred c--CEEehHHHHHHHh----CCE--EEecCCCEecCc
Confidence 6 666665544 443 466 677776666653
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=31 Score=42.36 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=62.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-hh-------------------chHHHHHHHHHHHhc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FE-------------------GILQAGSTIVENLRT 1999 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~~-------------------gilk~ga~iv~al~~ 1999 (2267)
.+++++...-..++++.+++ ..+-+|+|...+ .|+.|..-. .. ........++.++..
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 107 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVAD 107 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998865 567888887644 477665311 00 011223456777888
Q ss_pred CCCCEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+..|+|+.|- |.+.| |.-+++.+ |+ ++|.++++++.
T Consensus 108 ~~kpvIAav~--G~a~GgG~~lalac----D~--~ia~~~a~f~~ 144 (272)
T PRK06142 108 CRKPVIAAVQ--GWCIGGGVDLISAC----DM--RYASADAKFSV 144 (272)
T ss_pred CCCCEEEEec--CccccchHHHHHhC----CE--EEecCCCeecc
Confidence 9999999996 66666 44444443 66 66666666544
|
|
| >PRK09439 PTS system glucose-specific transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.7 Score=49.63 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred eecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEEe---------------------------
Q 000092 690 LVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK--------------------------- 738 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~i--------------------------- 738 (2267)
|.||+.|+++.+ -+.-|.|-+ |+-+|+.=. +..|.||.+|+|..+
T Consensus 23 i~aP~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~ 98 (169)
T PRK09439 23 IIAPLSGEIVNI-EDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVE 98 (169)
T ss_pred EEecCCeEEEEh-HHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccc
Q ss_pred ---------eCCCCccCCCCEEEEEecC
Q 000092 739 ---------MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 739 ---------~~~G~~v~~G~~La~l~~~ 757 (2267)
+++||.|.+||+|++++++
T Consensus 99 L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 99 LKGEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred cCCCceEEEecCCCEEeCCCEEEEEcHH
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=18 Score=44.00 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hh----c---hHHHHHH-HHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE----G---ILQAGST-IVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~----g---ilk~ga~-iv~al~~~~vP~i~vI~ 2009 (2267)
.++.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-. .. + ....... +...+..+.+|+|+.|-
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 100 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQ 100 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEc
Confidence 57889999999999988765 456667776544 366665211 00 1 1111122 22347788999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ -.++. .|+ ++|.++++++.
T Consensus 101 --G~a~GgG~~lal~----cD~--ria~~~a~f~~ 127 (255)
T PRK06563 101 --GYCLTLGIELMLA----ADI--VVAADNTRFAQ 127 (255)
T ss_pred --CeeecHHHHHHHh----CCE--EEecCCCEEeC
Confidence 6666654 44444 477 78887777765
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=11 Score=46.00 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=61.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--h-----------chHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--E-----------GILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--~-----------gilk~ga~iv~al~~~~vP~i 2005 (2267)
.++..+...-..++++.+++ ..+-+|+|.-.+ .|+.|..-.. . ...+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57888999999999998865 567778887655 3777763210 0 111122346677888999999
Q ss_pred EEEccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |-+.||+. .++. .|+ ++|.++++++.
T Consensus 105 aav~--G~a~GgG~~lal~----cD~--ria~~~a~f~~ 135 (260)
T PRK05980 105 AAVN--GLAFGGGCEITEA----VHL--AIASERALFAK 135 (260)
T ss_pred EEEc--CEEEhhhhHHhHh----CCE--EEecCCCEecC
Confidence 9997 66666544 3443 365 66666666554
|
|
| >TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit | Back alignment and domain information |
|---|
Probab=83.49 E-value=1.1 Score=58.66 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=40.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEee
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~ 739 (2267)
++-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 34 ~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 34 RDFVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred hhcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 445677778999999999999999998754 67899999999999993
|
This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein | Back alignment and domain information |
|---|
Probab=83.45 E-value=1.1 Score=58.34 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=21.0
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
..|.||.+|.|.+++|++||+|++||+|+.|+
T Consensus 59 ~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~ 90 (421)
T TIGR03794 59 DTIQSPGSGVVIDLDVEVGDQVKKGQVVARLF 90 (421)
T ss_pred eEEECCCCeEEEEEECCCcCEECCCCEEEEEC
Confidence 35666666666666666666666666666664
|
Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. |
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=83.24 E-value=15 Score=44.73 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-h----hchHHHHHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-F----EGILQAGSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-~----~gilk~ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
-.+++.......++++.++. -.+-+|+|.-.+ .|+.|..- + . .........++.++..+.+|+|+.|- |-
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~--G~ 99 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVR--GQ 99 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEec--Ce
Confidence 47889999999999998865 456677776543 36666531 1 0 11223334567788899999999997 66
Q ss_pred CCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2014 LRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.| |.-+++.+ |+ ++|.++++++.
T Consensus 100 a~GgG~~lal~c----D~--~ia~~~a~f~~ 124 (251)
T TIGR03189 100 CLGGGLEVAAAG----NL--MFAAPDAKLGQ 124 (251)
T ss_pred eeeHHHHHHHhC----CE--EEEcCCCEEeC
Confidence 655 44444443 66 77777776665
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=83.12 E-value=8 Score=47.59 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=63.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhhh--------hchHH--HHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDLF--------EGILQ--AGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e~--------~gilk--~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.++. -.+-+|+|.-.+ -|+.|..-.. ..... ....++..+..+.+|+|+.|
T Consensus 35 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 35 NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 57889999999999998865 356677777654 2777653110 00011 11235667888999999999
Q ss_pred ccCCcCCchhH-hhhccccCCccceeecccccEEEeeCc
Q 000092 2009 PMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2009 ~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
- |.+.||+. +++. .|+ ++|.++++++.-++
T Consensus 115 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe~ 145 (273)
T PRK07396 115 A--GYAIGGGHVLHLV----CDL--TIAADNAIFGQTGP 145 (273)
T ss_pred C--CEEehHHHHHHHh----CCE--EEeeCCcEEecccc
Confidence 6 66666544 3444 477 77877777776443
|
|
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.3 Score=53.17 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...|.||..|+|.++++++||.|..||+|++||
T Consensus 240 meieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 240 LMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3457999999999999999999999999999996
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=82.84 E-value=14 Score=45.05 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=62.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hh----hc---hHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF----EG---ILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~----~g---ilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
-++..+......++++.++. ..+-+|+|.-.. .|+.|..- +. .. .......++.++..+..|+|+.|-
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~- 102 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ- 102 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 57888999999999988864 566777777655 37776531 11 00 111234567788899999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -.++.+ |+ ++|.++++++.
T Consensus 103 -G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (256)
T TIGR03210 103 -GYAIGGGNVLVTIC----DL--TIASEKAQFGQ 129 (256)
T ss_pred -CEEehhhHHHHHhC----CE--EEEeCCCEEec
Confidence 6666654 444443 66 77777776665
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=82.75 E-value=1.7 Score=56.77 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=39.3
Q ss_pred EEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 672 LLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 672 v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
|..+..-+.++.+.-...|.||..|+|.++++++||.|+.||+|+.||.
T Consensus 119 V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 119 VQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred ecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 3334444455555556789999999999999999999999999999974
|
|
| >TIGR00830 PTBA PTS system, glucose subfamily, IIA component | Back alignment and domain information |
|---|
Probab=82.73 E-value=1.9 Score=46.72 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=37.0
Q ss_pred CCceecCCCceeEEEEccCCCE-E--cCCCcEEE---EEccccceeeecCCCcE-EEEeeCCCCccCCCCEEEEEecC
Q 000092 687 PSKLVAETPCKLLRYLVSDGSH-I--DADTPYAE---VEVMKMCMPLLSPASGV-LQFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~-V--~~G~~l~~---iEaMKM~~~l~ap~~G~-v~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.+.||..|+|..+.-..-.. + +.|-.+++ |.+.|| .|. .+..+++||.|.+||+|++++.+
T Consensus 35 ~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L--------~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 35 DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeec--------CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 4689999999998764321111 1 11221111 122222 232 23448999999999999999854
|
These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c |
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.4 Score=54.17 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec--c---hHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT--G---FSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt--G---p~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. + ...+-+.+|... .-+...+.+.+ ..
T Consensus 107 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~e-A~ 185 (278)
T PLN03214 107 RLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAE-AK 185 (278)
T ss_pred CCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHH-HH
Confidence 469999999999999999999999999998864 3442 1 123555566432 11112233222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHhc
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
.-|++|.++++ .+..+.+++|..-
T Consensus 186 ~~Glv~~vv~~-~~l~~~a~~~a~~ 209 (278)
T PLN03214 186 QLGLIDEVVPA-AALMEAAASAMER 209 (278)
T ss_pred HcCCCcEecCh-HHHHHHHHHHHHH
Confidence 68999999975 4555566665443
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=82.61 E-value=9.6 Score=46.24 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=60.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-----hchHHH-HHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----EGILQA-GSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-----~gilk~-ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
..+.++-..-..++++.++. ..+.+|+|...+ .|+.|..-.. .+...+ ...++..+..++.|+|+.|- |.
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~--G~ 104 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQ--GH 104 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEec--Cc
Confidence 57888999999999988865 456677776543 3777753111 011011 13567788899999999996 66
Q ss_pred CCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2014 LRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|| ...++.+ |+ ++|.++++++.
T Consensus 105 a~GgG~~lal~c----D~--~ia~~~a~f~~ 129 (249)
T PRK07110 105 AIGGGLVLGLYA----DI--VVLSRESVYTA 129 (249)
T ss_pred eechHHHHHHhC----CE--EEEeCCCEecC
Confidence 6554 4445544 66 67766665543
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.40 E-value=5 Score=51.73 Aligned_cols=112 Identities=12% Similarity=0.178 Sum_probs=66.9
Q ss_pred EEEEEEEEecCCceEEEeCCceEEEEe---eecccceEEEEcCceeecccCCCCCceecCCCceeEEEEcc-CCCEEcCC
Q 000092 637 EIEAEIHTLRDGGLLMQLDGNSHVVYA---EEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVS-DGSHIDAD 712 (2267)
Q Consensus 637 ~~~V~v~~l~dg~~~v~~~G~s~~v~~---~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~-~Gd~V~~G 712 (2267)
.+.+.++..+++.+.+.++|.+|..-. ..+.....+.+++ ..+.+..+.-.-|..+.++.+ .+-.|+-.
T Consensus 512 ~v~v~V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~g~~~~l~~~~~~~~ve~~ 584 (670)
T KOG0238|consen 512 PVHVAVRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDG-------EGNGYQGRVIILGDEISLFSNEGVIKVEVL 584 (670)
T ss_pred ceEEEEEECCCCeEEEEecCCceEeeccceecccccceEEEEe-------ccCceEEEEEEeCCeEEEEecCcceeEecC
Confidence 367788888899999999999854321 2222222222222 122333333344433333333 22333333
Q ss_pred CcEEEEEccccce------eeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 713 TPYAEVEVMKMCM------PLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 713 ~~l~~iEaMKM~~------~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
++ -.++.|+-+. .+.||..|.|.++ +++|+.|..||.|+.++.
T Consensus 585 ~~-k~l~~~~s~~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 585 PP-KYLSPQSSETKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred Ch-HhhhhhhhhhccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 33 3334444433 3789999999988 999999999999998874
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=82.38 E-value=12 Score=46.04 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh-h----c-------hHHHHHHHHHHHhcCCCCEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-E----G-------ILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~-~----g-------ilk~ga~iv~al~~~~vP~i 2005 (2267)
...+.++...-..++++.++. ..+-+|+|.-.+ .|+.|..- +. . + ..+....++.++..+.+|+|
T Consensus 29 ~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 29 RNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 357889999999999998865 566677776544 36666531 10 0 0 11122346777889999999
Q ss_pred EEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |.+.||+ -+++.+ |+ ++|.++|+++.
T Consensus 109 Aav~--G~a~GgG~~lal~c----D~--~ia~~~a~f~~ 139 (275)
T PRK09120 109 AMVN--GWCFGGGFSPLVAC----DL--AIAADEAQFGL 139 (275)
T ss_pred EEEc--CEEechhHHHHHhC----CE--EEEeCCcEecC
Confidence 9996 6666654 444443 66 66666666655
|
|
| >PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=1.9 Score=56.44 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEee
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKM 739 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~ 739 (2267)
.-.|.--+.+|++||+|++||+|++-... +..++.||.+|+|+.|.
T Consensus 36 qh~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 36 DYVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred hcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 33566667999999999999999976654 57899999999999993
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=82.27 E-value=19 Score=44.12 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h----hchH-HHHHHHHHHHhcCCCCEEEEEccCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F----EGIL-QAGSTIVENLRTYKQPVFVYIPMMAE 2013 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~----~gil-k~ga~iv~al~~~~vP~i~vI~~~g~ 2013 (2267)
..+.++-.....++++.++. ..+-+|+|.-.+ .|+.|..-. . .+-. .....++..+..+.+|+|+.|- |-
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~--G~ 109 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAIN--GF 109 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEEC--Ce
Confidence 57889999999999998865 456667776543 477776421 1 1111 1123456678889999999997 66
Q ss_pred CCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2014 LRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2014 ~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.||+. +++. .|+ ++|.++++++.
T Consensus 110 a~GgG~~lal~----cD~--ria~~~a~f~~ 134 (265)
T PLN02888 110 AITAGFEIALA----CDI--LVASRGAKFID 134 (265)
T ss_pred eechHHHHHHh----CCE--EEecCCCEecC
Confidence 666544 4444 376 77777776655
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=1 Score=54.90 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=50.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc-------ceec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-------IILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~-------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++. +++. |...|.+.+|... .-+...+++.+ ...
T Consensus 98 ~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~e-A~~ 176 (260)
T PRK07659 98 PKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATE-ALD 176 (260)
T ss_pred CCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHH-HHH
Confidence 469999999999999999999999999999875 3332 2233555555432 11223333333 447
Q ss_pred cCceEEEec
Q 000092 1807 NGVVHLTVS 1815 (2267)
Q Consensus 1807 nGv~d~~v~ 1815 (2267)
-|++|.+++
T Consensus 177 ~Glv~~vv~ 185 (260)
T PRK07659 177 LGLIDEVIG 185 (260)
T ss_pred cCChHHHhh
Confidence 899999983
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=81.92 E-value=19 Score=43.87 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh------hc-----hHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF------EG-----ILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~------~g-----ilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
.++.++......++++.++. .+-+|++...+ -|+.|..-.. .+ .......++..+..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 104 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVR 104 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57889999999999998874 56677776544 3666652110 00 012224567778889999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ -+++. .|+ ++|.++++++.
T Consensus 105 --G~a~GgG~~lala----~D~--~ia~~~a~f~~ 131 (255)
T PRK07112 105 --GKVNAGGIGFVAA----SDI--VIADETAPFSL 131 (255)
T ss_pred --cEEEcchhHHHHc----CCE--EEEcCCCEEeC
Confidence 6666654 44444 477 78888888776
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=1.8 Score=54.39 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK 722 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK 722 (2267)
...|.||..|+|.+++|++|+.|+.||+|+.|+.++
T Consensus 45 ~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 456999999999999999999999999999998653
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.60 E-value=1.5 Score=53.13 Aligned_cols=89 Identities=24% Similarity=0.175 Sum_probs=61.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec----chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT----GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||.-++..||++|+.+++.+ +|. |-..+-+.+|..- .-+...+.+ +-...
T Consensus 98 ~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a-~eA~~ 176 (257)
T COG1024 98 PKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISA-AEALE 176 (257)
T ss_pred CCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCH-HHHHH
Confidence 5799999999999999999999999999988753 332 2234455555432 011122222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.++++..+..+.+++|..-+
T Consensus 177 ~Glv~~vv~~~~~l~~~a~~~a~~~ 201 (257)
T COG1024 177 LGLVDEVVPDAEELLERALELARRL 201 (257)
T ss_pred cCCcCeeeCCHHHHHHHHHHHHHHH
Confidence 9999999987667777777776654
|
|
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=81.47 E-value=1.7 Score=42.23 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
...++||..|+|+++.++.|+.|..|++++.|
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45699999999999999999999999999864
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins | Back alignment and domain information |
|---|
Probab=81.21 E-value=1.9 Score=52.03 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=38.8
Q ss_pred ecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--ceeeecCCCcEEEEeeC
Q 000092 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM--CMPLLSPASGVLQFKMA 740 (2267)
Q Consensus 691 ~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM--~~~l~ap~~G~v~~i~~ 740 (2267)
-...+|..-+++|++||+|++||+|.+ .|- ..-..||.+|+|+.|.+
T Consensus 33 ~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 33 PDDFPGMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CcccCCCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 456788889999999999999999986 333 34468999999999955
|
The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process |
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=81.20 E-value=12 Score=46.69 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--------CCCCchhhhh--------------h--chHHH----HHH
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--------GFSGGQRDLF--------------E--GILQA----GST 1992 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--------Gf~~G~~~e~--------------~--gilk~----ga~ 1992 (2267)
..+.++...-..++++.++. ..+-+|+|.-.+ .|+.|..-.. . ...+. ...
T Consensus 47 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (302)
T PRK08321 47 NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILE 126 (302)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHH
Confidence 57889999999999998864 567777776543 3766653110 0 00001 112
Q ss_pred HHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecc-cccEEEeeC
Q 000092 1993 IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYAD-RTAKGNVLE 2045 (2267)
Q Consensus 1993 iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~-p~A~~gvl~ 2045 (2267)
+...+..+.+|+|+.|- |.+.||+...... .|+ ++|. ++++++..+
T Consensus 127 ~~~~l~~~pkP~IAaV~--G~a~GgG~~lala---cD~--ria~~~~a~f~~pe 173 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVP--GWAAGGGHSLHVV---CDL--TLASREHARFKQTD 173 (302)
T ss_pred HHHHHHcCCCCEEEEEc--CeeehHHHHHHHh---CCE--EEEecCCCEEECCc
Confidence 44567788999999996 6666655443322 476 7777 577777643
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.16 E-value=53 Score=40.01 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=67.0
Q ss_pred CccCHHHHHHHHHHHHHhccc-CCcEEEEecCC-CCCCchhhhh-h---------chHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNRE-ELPLFILANWR-GFSGGQRDLF-E---------GILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~-~lPLv~l~d~~-Gf~~G~~~e~-~---------gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
-++.+........+++.++.. .+.+|+|.-.+ .|+.|..=-. . ........++.++..+..|+|+.|-
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 478999999999999999874 78888887665 4877753111 0 1233445688899999999999996
Q ss_pred cCCcCCch-hHhhhccc--c-CCccceeecccccEEEeeCccch
Q 000092 2010 MMAELRGG-AWVVVDSR--I-NSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2010 ~~g~~~GG-a~vv~~~~--~-n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|-+.|| .-.++.+. + ..+. .++.|...+|++.+.|+
T Consensus 107 --G~a~GgG~eLal~~D~ria~~~a--~f~~pe~~iGl~Pg~g~ 146 (257)
T COG1024 107 --GYALGGGLELALACDIRIAAEDA--KFGLPEVNLGLLPGDGG 146 (257)
T ss_pred --ceEeechhhhhhcCCeEEecCCc--EecCcccccccCCCCcH
Confidence 666665 44444432 1 1122 34445555555554343
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=80.82 E-value=8 Score=52.56 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhccc-C-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc
Q 000092 1948 SATKTAQALMDFNRE-E-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR 2025 (2267)
Q Consensus 1948 sa~K~arai~~a~~~-~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~ 2025 (2267)
+....++.++.+... + -.||.-+|+||-+.... + .....+..+.....|+++++- +-.+.||-|+++++
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as---e----~i~~~i~~~~~~gKPVva~~~-g~aaSggY~iA~aa- 400 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS---E----IIRRELARAQARGKPVIVSMG-AMAASGGYWIASAA- 400 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH---H----HHHHHHHHHHhCCCcEEEEEC-CccccHHHHHHHhC-
Confidence 455677777777543 3 47888899999322111 1 123344445566789999996 22445566666654
Q ss_pred cCCccceeecccccEEEeeCc
Q 000092 2026 INSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2026 ~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|. +||.|++.+|.+|-
T Consensus 401 ---D~--I~a~p~t~~GSIGv 416 (584)
T TIGR00705 401 ---DY--IVASPNTITGSIGV 416 (584)
T ss_pred ---CE--EEECCCCeeecCEE
Confidence 66 99999998866654
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=80.48 E-value=21 Score=44.46 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=63.2
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------------------------hchHHHHHH
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------------------EGILQAGST 1992 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------------------~gilk~ga~ 1992 (2267)
..++.++...-..++++.++. ..+-+|+|...+ .|+.|..-.. .........
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (296)
T PRK08260 25 LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGR 104 (296)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHH
Confidence 367889999999999998865 566777776543 3665542110 001111234
Q ss_pred HHHHHhcCCCCEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 1993 IVENLRTYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 1993 iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
++..+..+.+|+|+.|- |-+.| |.-+++. .|+ ++|.++++++.-
T Consensus 105 ~~~~l~~~pkPvIAav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~p 149 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVN--GPAVGVGATMTLA----MDI--RLASTAARFGFV 149 (296)
T ss_pred HHHHHHhCCCCEEEEEC--CeeehHhHHHHHh----CCE--EEeeCCCEEecc
Confidence 67778889999999996 66655 4444554 477 888888877763
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=80.04 E-value=1.5 Score=50.35 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=37.0
Q ss_pred ceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~ 1781 (2267)
.|+|++|.|.|.|+|.+++..||+++|.+++.+.+.|..
T Consensus 72 kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~ 110 (177)
T cd07014 72 KPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIF 110 (177)
T ss_pred CCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechH
Confidence 599999999999999999999999999999999999874
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2267 | ||||
| 3tdc_A | 762 | Crystal Structure Of Human Acetyl-Coa Carboxylase 2 | 0.0 | ||
| 3ff6_A | 760 | Human Acc2 Ct Domain With Cp-640186 Length = 760 | 0.0 | ||
| 2x24_A | 793 | Bovine Acc2 Ct Domain In Complex With Inhibitor Len | 0.0 | ||
| 4asi_A | 769 | Crystal Structure Of Human Acaca C-Terminal Domain | 0.0 | ||
| 3tv5_A | 769 | Crystal Structure Of The Humanized Carboxyltransfer | 0.0 | ||
| 1w2x_A | 758 | Crystal Structure Of The Carboxyltransferase Domain | 0.0 | ||
| 3h0j_A | 769 | Crystal Structure Of The Carboxyltransferase Domain | 0.0 | ||
| 3pgq_A | 764 | Crystal Structure Of The Carboxyltransferase Domain | 0.0 | ||
| 1uyr_A | 737 | Acetyl-Coa Carboxylase Carboxyltransferase Domain I | 0.0 | ||
| 1uyv_A | 737 | Acetyl-Coa Carboxylase Carboxyltransferase Domain L | 0.0 | ||
| 1od2_A | 805 | Acetyl-Coa Carboxylase Carboxyltransferase Domain L | 1e-180 | ||
| 1w96_A | 554 | Crystal Structure Of Biotin Carboxylase Domain Of A | 1e-179 | ||
| 1w93_A | 553 | Crystal Structure Of Biotin Carboxylase Domain Of A | 1e-179 | ||
| 2hjw_A | 573 | Crystal Structure Of The Bc Domain Of Acc2 Length = | 1e-177 | ||
| 3jrx_A | 587 | Crystal Structure Of The Bc Domain Of Acc2 In Compl | 1e-176 | ||
| 3jrw_A | 587 | Phosphorylated Bc Domain Of Acc2 Length = 587 | 1e-176 | ||
| 2yl2_A | 540 | Crystal Structure Of Human Acetyl-Coa Carboxylase 1 | 1e-176 | ||
| 1uys_A | 737 | Acetyl-Coa Carboxylase Carboxyltransferase Domain I | 1e-175 | ||
| 3gid_A | 540 | The Biotin Carboxylase (Bc) Domain Of Human Acetyl- | 1e-173 | ||
| 3tw7_A | 1165 | Structure Of Rhizobium Etli Pyruvate Carboxylase T8 | 8e-61 | ||
| 2qf7_A | 1165 | Crystal Structure Of A Complete Multifunctional Pyr | 8e-61 | ||
| 3va7_A | 1236 | Crystal Structure Of The Kluyveromyces Lactis Urea | 5e-59 | ||
| 2dzd_A | 461 | Crystal Structure Of The Biotin Carboxylase Domain | 4e-57 | ||
| 3jzf_A | 486 | Crystal Structure Of Biotin Carboxylase From E. Col | 3e-54 | ||
| 2gpw_A | 469 | Crystal Structure Of The Biotin Carboxylase Subunit | 7e-54 | ||
| 2gps_A | 469 | Crystal Structure Of The Biotin Carboxylase Subunit | 1e-53 | ||
| 3rup_B | 452 | Crystal Structure Of E.Coli Biotin Carboxylase In C | 2e-53 | ||
| 1bnc_A | 449 | Three-Dimensional Structure Of The Biotin Carboxyla | 2e-53 | ||
| 3rv4_A | 452 | Crystal Structure Of E.Coli Biotin Carboxylase R16e | 3e-53 | ||
| 3g8c_A | 444 | Crystal Stucture Of Biotin Carboxylase In Complex W | 6e-53 | ||
| 1dv2_A | 452 | The Structure Of Biotin Carboxylase, Mutant E288k, | 6e-53 | ||
| 3g8d_A | 444 | Crystal Structure Of The Biotin Carboxylase Subunit | 3e-52 | ||
| 4hnt_A | 1173 | Crystal Structure Of F403a Mutant Of S. Aureus Pyru | 3e-52 | ||
| 3ho8_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 4e-52 | ||
| 3bg5_A | 1173 | Crystal Structure Of Staphylococcus Aureus Pyruvate | 4e-52 | ||
| 3hbl_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 4e-52 | ||
| 3hb9_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 4e-52 | ||
| 4hnu_A | 1173 | Crystal Structure Of K442e Mutant Of S. Aureus Pyru | 4e-52 | ||
| 2vpq_A | 451 | Crystal Structure Of Biotin Carboxylase From S. Aur | 5e-52 | ||
| 3n6r_A | 681 | Crystal Structure Of The Holoenzyme Of Propionyl-co | 6e-52 | ||
| 2vqd_A | 464 | Crystal Structure Of Biotin Carboxylase From Pseudo | 2e-51 | ||
| 4hnv_A | 1173 | Crystal Structure Of R54e Mutant Of S. Aureus Pyruv | 2e-51 | ||
| 3u9s_A | 655 | Crystal Structure Of P. Aeruginosa 3-methylcrotonyl | 4e-48 | ||
| 1ulz_A | 451 | Crystal Structure Of The Biotin Carboxylase Subunit | 9e-44 | ||
| 3ouz_A | 446 | Crystal Structure Of Biotin Carboxylase-Adp Complex | 4e-40 | ||
| 2dn8_A | 100 | Solution Structure Of Rsgi Ruh-053, An Apo-Biotin C | 2e-14 | ||
| 1x0u_A | 522 | Crystal Structure Of The Carboxyl Transferase Subun | 2e-13 | ||
| 3n6r_B | 531 | Crystal Structure Of The Holoenzyme Of Propionyl-co | 4e-08 | ||
| 1vrg_A | 527 | Crystal Structure Of Propionyl-coa Carboxylase, Bet | 1e-07 | ||
| 2bzr_A | 548 | Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Ca | 1e-07 | ||
| 2a7s_A | 548 | Crystal Structure Of The Acyl-Coa Carboxylase, Accd | 2e-07 | ||
| 2kcc_A | 84 | Solution Structure Of Biotinoyl Domain From Human A | 4e-07 | ||
| 1on3_A | 523 | Transcarboxylase 12s Crystal Structure: Hexamer Ass | 1e-06 | ||
| 1ce8_A | 1073 | Carbamoyl Phosphate Synthetase From Escherichis Col | 2e-05 | ||
| 1jdb_B | 1073 | Carbamoyl Phosphate Synthetase From Escherichia Col | 2e-05 | ||
| 1a9x_A | 1073 | Carbamoyl Phosphate Synthetase: Caught In The Act O | 2e-05 | ||
| 3iav_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422v Lengt | 1e-04 | ||
| 1xnw_A | 530 | Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo | 2e-04 | ||
| 3gf3_A | 588 | Glutaconyl-Coa Decarboxylase A Subunit From Clostri | 2e-04 | ||
| 3ib9_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422l Lengt | 3e-04 | ||
| 3ibb_A | 530 | Propionyl-Coa Carboxylase Beta Subunit, D422a Lengt | 4e-04 | ||
| 3u9r_B | 555 | Crystal Structure Of P. Aeruginosa 3-methylcrotonyl | 4e-04 | ||
| 3mfm_C | 530 | Crystal Structures And Mutational Analyses Of Acyl- | 8e-04 | ||
| 1xnv_A | 530 | Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo | 8e-04 |
| >pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2 Length = 762 | Back alignment and structure |
|
| >pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186 Length = 760 | Back alignment and structure |
|
| >pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor Length = 793 | Back alignment and structure |
|
| >pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain Length = 769 | Back alignment and structure |
|
| >pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase Domain Of Yeast Acetyl-Coa Caroxylase In Complex With Compound 1 Length = 769 | Back alignment and structure |
|
| >pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186 Length = 758 | Back alignment and structure |
|
| >pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of Acetyl-Coenzyme A Carboxylase In Complex With Compound 2 Length = 769 | Back alignment and structure |
|
| >pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S. Cerevisiae Acetyl Coa Carboxylase In Complex With Pinoxaden Length = 764 | Back alignment and structure |
|
| >pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In Complex With Inhibitor Diclofop Length = 737 | Back alignment and structure |
|
| >pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i V1967i Mutant Length = 737 | Back alignment and structure |
|
| >pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain Length = 805 | Back alignment and structure |
|
| >pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae In Complex With Soraphen A Length = 554 | Back alignment and structure |
|
| >pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae Length = 553 | Back alignment and structure |
|
| >pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 Length = 573 | Back alignment and structure |
|
| >pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With Soraphen A Length = 587 | Back alignment and structure |
|
| >pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2 Length = 587 | Back alignment and structure |
|
| >pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain Length = 540 | Back alignment and structure |
|
| >pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In Complex With Inhibitor Haloxyfop Length = 737 | Back alignment and structure |
|
| >pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa Carboxylase 2 (Acc2) In Complex With Soraphen A Length = 540 | Back alignment and structure |
|
| >pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165 | Back alignment and structure |
|
| >pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165 | Back alignment and structure |
|
| >pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea Carboxylase Length = 1236 | Back alignment and structure |
|
| >pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of Pyruvate Carboxylase Length = 461 | Back alignment and structure |
|
| >pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In Complex With Benzimidazoles Series Length = 486 | Back alignment and structure |
|
| >pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 | Back alignment and structure |
|
| >pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 | Back alignment and structure |
|
| >pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase Subunit Of Acetyl-Coa Carboxylase Length = 449 | Back alignment and structure |
|
| >pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With Biotin, Bicarbonate, Adp And Mg Ion Length = 444 | Back alignment and structure |
|
| >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 | Back alignment and structure |
|
| >pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli Length = 444 | Back alignment and structure |
|
| >pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 | Back alignment and structure |
|
| >pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus Complexed With Amppnp Length = 451 | Back alignment and structure |
|
| >pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681 | Back alignment and structure |
|
| >pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas Aeruginosa Complexed With Ampcp Length = 464 | Back alignment and structure |
|
| >pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex Length = 655 | Back alignment and structure |
|
| >pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase Length = 451 | Back alignment and structure |
|
| >pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From Campylobacter Jejuni Length = 446 | Back alignment and structure |
|
| >pdb|2DN8|A Chain A, Solution Structure Of Rsgi Ruh-053, An Apo-Biotin Carboxy Carrier Protein From Human Transcarboxylase Length = 100 | Back alignment and structure |
|
| >pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of Putative Pcc Of Sulfolobus Tokodaii Length = 522 | Back alignment and structure |
|
| >pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 531 | Back alignment and structure |
|
| >pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta Subunit (tm0716) From Thermotoga Maritima At 2.30 A Resolution Length = 527 | Back alignment and structure |
|
| >pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Carboxylase Beta-Subunit From Mycobacterium Tuberculosis Length = 548 | Back alignment and structure |
|
| >pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From Mycobacterium Tuberculosis Length = 548 | Back alignment and structure |
|
| >pdb|2KCC|A Chain A, Solution Structure Of Biotinoyl Domain From Human Acetyl- Coa Carboxylase 2 Length = 84 | Back alignment and structure |
|
| >pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly And Substrate Binding To A Multienzyme Core (With Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound) Length = 523 | Back alignment and structure |
|
| >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 | Back alignment and structure |
|
| >pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073 | Back alignment and structure |
|
| >pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073 | Back alignment and structure |
|
| >pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v Length = 530 | Back alignment and structure |
|
| >pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #2, Mutant D422i Length = 530 | Back alignment and structure |
|
| >pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co-Crystallized With Glutaconyl-Coa Length = 588 | Back alignment and structure |
|
| >pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l Length = 530 | Back alignment and structure |
|
| >pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a Length = 530 | Back alignment and structure |
|
| >pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc), Beta Subunit Length = 555 | Back alignment and structure |
|
| >pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa Carboxylase Subunit Of Streptomyces Coelicolor Length = 530 | Back alignment and structure |
|
| >pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #1 Length = 530 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Length = 793 | Back alignment and structure |
|---|
Score = 937 bits (2424), Expect = 0.0
Identities = 363/801 (45%), Positives = 503/801 (62%), Gaps = 31/801 (3%)
Query: 1482 SKHTVVYHSVAVR----GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETA 1537
S H +HS + G HG+ +N Y + +L KR A+ TTY YDFP F A
Sbjct: 3 SSHHHHHHSSGLVPRGSGPQHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPEMFRQA 62
Query: 1538 LEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMF 1597
L + W S P+ PKD L TEL D G LV + R PG N +GMVA+ M +
Sbjct: 63 LFKMWPS--PDKYPKDI--LTYTELVL-DPQG----QLVEMNRLPGGNEVGMVAFKMTLK 113
Query: 1598 TPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVA 1657
T E+P GR I++++ND+TF+ GSFGP ED +L ++LA A+ +P +YLAANSGARIG+A
Sbjct: 114 TLEYPEGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLA 173
Query: 1658 EEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKL-ESGETRWVVDSIVG 1716
EE+K F++ W D +P +G Y+YLTP+DY RI S H + E GE+R+V+ I+G
Sbjct: 174 EEIKHMFQVAWVDPEDPHKGIKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIG 233
Query: 1717 KEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1776
KE+GLGVENL GSG IAG S+ Y E T++ V+ R +GIGAYL RLG R IQ + II
Sbjct: 234 KEEGLGVENLRGSGMIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHII 293
Query: 1777 LTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIG 1836
LTG +ALNK+LGR+VY+S+ QLGG +IM NGV H+TV DD EG+ IL+WLSY+P
Sbjct: 294 LTGATALNKVLGRDVYTSNNQLGGVQIMHHNGVSHVTVPDDFEGVCTILEWLSYMPKDNR 353
Query: 1837 GALPIISPLDPPDRPVEYLPENS-CDPRAAICGFLD--NNGKWIGGIFDKDSFVETLEGW 1893
+P+++P DP DR +E+ P DPR + G G W G FD+ SF E + W
Sbjct: 354 SPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPW 413
Query: 1894 ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTA 1953
A+TVVTGRARLGGIPVG++A ET+TV V+PADP LDS +++ QAGQVWFPDSA KTA
Sbjct: 414 AQTVVTGRARLGGIPVGVIAAETRTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTA 473
Query: 1954 QALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAE 2013
QA+ DFNRE+LPL I ANWRGFSGG +D+++ +L+ G+ IV+ LR Y+QPV +YIP AE
Sbjct: 474 QAIKDFNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAE 533
Query: 2014 LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDL 2073
+RGG+W V+D+ IN IEMYADR ++ +VLEPEG +EIK++ K+L++ + RLD L
Sbjct: 534 VRGGSWAVMDTSINPLCIEMYADRESRASVLEPEGTVEIKYQKKDLVKTIRRLDPISKKL 593
Query: 2074 MAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2133
+ +L + + + L+ Q+KARE LLP Y QVA FA+LHDT+ RM KGVI ++
Sbjct: 594 VEQLGVS--ELSDTDRKELEGQLKAREDLLLPMYHQVALHFADLHDTAGRMLEKGVIYDI 651
Query: 2134 VDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGA 2193
++W +RSF RLRR + ES + + + A + L+H M+++WF+++E A K
Sbjct: 652 LEWKTARSFLYWRLRRLLLESQVKQEVLRACPE-LSHMHVQSMLRRWFVETEGA-VKAYL 709
Query: 2194 WLDDETFFTWKDDSRNYE--------KKVQELGVQKVLLQLTNIGNSTSDLQALPQGLAT 2245
W +++T W + + + L L + + + + L
Sbjct: 710 WDNNQTVVQWLEAHGQASDVLHSTIRENITCLRRDSALKTIQGLVQ--ENPELAMDSLVY 767
Query: 2246 LLSKVDPSCREQLIGEISKAL 2266
+ + P+ R Q+I +S
Sbjct: 768 VSQHISPAERAQVIHLLSTTD 788
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 | Back alignment and structure |
|---|
Score = 928 bits (2399), Expect = 0.0
Identities = 358/776 (46%), Positives = 484/776 (62%), Gaps = 27/776 (3%)
Query: 1495 GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDK 1554
G +H + Y L KR A TTY YDFP F A W + +++ D
Sbjct: 1 GSMHLRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDD 60
Query: 1555 ALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDV 1614
EL D++G L VER PG N IGMVA+ + + TPE+P GR ++VAND+
Sbjct: 61 -FFISNELIE-DENGE----LTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDI 114
Query: 1615 TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNP 1674
TFK GSFGP+ED FF VT+ A + +P IYLAANSGARIG+AEE+ F++ W D NP
Sbjct: 115 TFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANP 174
Query: 1675 DRGFNYVYLTPEDYARIG----SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSG 1730
D+GF Y+YLT E + + + E + +GE R+V+ +I+G EDGLGVE L GSG
Sbjct: 175 DKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSG 234
Query: 1731 AIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGRE 1790
IAGA SRAY + FT+T VT R+VGIGAYL RLG R IQ QPIILTG A+NK+LGRE
Sbjct: 235 LIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGRE 294
Query: 1791 VYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDR 1850
VY+S++QLGG +IM NGV HLT DDL G+ I++W+SYVP +PI+ D DR
Sbjct: 295 VYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDR 354
Query: 1851 PVEYLPENS--CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIP 1908
PV++ P N D R I G +G + G+FDK SF ETL GWA+ VV GRARLGGIP
Sbjct: 355 PVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKGVVVGRARLGGIP 413
Query: 1909 VGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPLF 1967
+G++ VET+TV +IPADP +S E ++ + GQVW P+SA KTAQA+ DFN E+LP+
Sbjct: 414 LGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMM 473
Query: 1968 ILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRIN 2027
ILANWRGFSGGQRD+F +L+ GS IV+ L YKQP+ +YIP ELRGG+WVVVD IN
Sbjct: 474 ILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTIN 533
Query: 2028 SDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLA 2087
+D +EMYAD A+ VLEP+GM+ IKFR ++LL+ M RLD K +L ++L +
Sbjct: 534 ADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEV- 592
Query: 2088 MVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRL 2147
+ + +Q+ RE++LLP Y Q++ +FA+LHD S RM AKGVI + ++W ++R FF RL
Sbjct: 593 -HQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRL 651
Query: 2148 RRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTW-KDD 2206
RRR+ E L+K L+ G+ + I I+ W+ S DD TW +++
Sbjct: 652 RRRLNEEYLIKRLSHQVGE-ASRLEKIARIRSWYPASV-------DHEDDRQVATWIEEN 703
Query: 2207 SRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEI 2262
+ + K++ L ++ L SD GL+ ++ + +E+L+ +
Sbjct: 704 YKTLDDKLKGLKLESFAQDLAKKI--RSDHDNAIDGLSEVIKMLSTDDKEKLLKTL 757
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587 | Back alignment and structure |
|---|
Score = 808 bits (2089), Expect = 0.0
Identities = 300/578 (51%), Positives = 399/578 (69%), Gaps = 20/578 (3%)
Query: 7 RSAMAGLG-RGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIR 65
R +M+GL G + + + ++ EF GG + I +LIANNG+AAVK +R
Sbjct: 14 RPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMR 73
Query: 66 SIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125
SIR WAYE F E+AI V M TPED++ NAE+I++AD +V VPGG NNNNYANV+LIV+
Sbjct: 74 SIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVD 133
Query: 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185
+A+ V AVW GWGHASE P+LP+ L G+ FLGPP+ +M ALGDKI S+++AQ V
Sbjct: 134 IAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQV 193
Query: 186 PTLPWSGSHVKIP------PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239
PTLPWSGS + + + +++P+DVY + CV +E + + + +G+P MIKAS
Sbjct: 194 PTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASE 253
Query: 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALH 299
GGGGKGIRK + ++ LF+QVQ E+PGSPIF+MK+A +RHLEVQ+L DQYGN +L
Sbjct: 254 GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLF 313
Query: 300 SRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359
RDCS+QRRHQKI+EE P T+APL + +EQ A RLAK V YV A TVEYLYS + G +
Sbjct: 314 GRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS-QDGSF 372
Query: 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRK 419
+FLELNPRLQVEHP TE IA++NLPAAQ+ + MG+PL ++ +IR YG G
Sbjct: 373 HFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG------- 425
Query: 420 TSVIATPFDFDQAEST-RPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS 478
TP F+ + +GH +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFS
Sbjct: 426 ----VTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFS 481
Query: 479 VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASD 538
V + GG+HEF+DSQFGH F++GE+R AI+NMV+ LKE+ IRG+ RT V+Y I+LL
Sbjct: 482 VAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETES 541
Query: 539 YRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKA 576
++ N I TGWLD IA +V+AE+P L V+ +
Sbjct: 542 FQNNDIDTGWLDYLIAEKVQAEKPDIMLGVLEHHHHHH 579
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540 | Back alignment and structure |
|---|
Score = 798 bits (2064), Expect = 0.0
Identities = 288/534 (53%), Positives = 377/534 (70%), Gaps = 19/534 (3%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
++ EF GG + I +LIANNG+AAVK +RSIR WAYE F E+AI V M
Sbjct: 19 HRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVM 78
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
TPED++ NAE+I++AD +V VPGG NNNNYANV+LIV++A+ V AVW GWGHASE P
Sbjct: 79 VTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENP 138
Query: 147 ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIP------PE 200
+LP+ L G+ FLGPP+ +M ALGDKI S+++AQ VPTLPWSGS + + +
Sbjct: 139 KLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQ 198
Query: 201 SCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFK 260
+++P+DVY + CV +E + + + +G+P MIKAS GGGGKGIRK + ++ LF+
Sbjct: 199 GKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFR 258
Query: 261 QVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITV 320
QVQ E+PGSPIF+MK+A +RHLEVQ+L DQYGN +L RDCS+QRRHQKI+EE P T+
Sbjct: 259 QVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATI 318
Query: 321 APLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE 380
APL + +EQ A RLAK V YV A TVEYLYS + G ++FLELNPRLQVEHP TE IA+
Sbjct: 319 APLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS-QDGSFHFLELNPRLQVEHPCTEMIAD 377
Query: 381 INLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAEST-RPKG 439
+NLPAAQ+ + MG+PL ++ +IR YG G TP F+ + +G
Sbjct: 378 VNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG-----------VTPISFETPSNPPLARG 426
Query: 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAF 499
H +A R+TSE+PD+GFKP+SG VQEL+F+S NVW YFSV + GG+HEF+DSQFGH F++
Sbjct: 427 HVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSW 486
Query: 500 GESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
GE+R AI+NMV+ LKE+ IRG+ RT V+Y I+LL ++ N I TGWLD I
Sbjct: 487 GENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLI 540
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554 | Back alignment and structure |
|---|
Score = 792 bits (2048), Expect = 0.0
Identities = 293/531 (55%), Positives = 379/531 (71%), Gaps = 8/531 (1%)
Query: 28 SPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMA 87
S + +F +S GG I ILIANNG+AAVK IRS+R WAYETFG ++ + VAMA
Sbjct: 27 DKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMA 86
Query: 88 TPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPE 147
TPED+ NAE+IR+ADQ++EVPGGTNNNNYANV LIV++AE VDAVW GWGHASE P
Sbjct: 87 TPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPL 146
Query: 148 LPDTL--STKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIP---PESC 202
LP+ L S + +IF+GPP +M +LGDKI S+++AQ+A VP +PWSG+ V ++
Sbjct: 147 LPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTG 206
Query: 203 LVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262
LV++ DD+Y++ C + E+ + + +G+P MIKAS GGGGKGIR+V +++ AL+ Q
Sbjct: 207 LVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQA 266
Query: 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP 322
E+PGSPIFIMK+A ++RHLEVQLL DQYG +L RDCSVQRRHQKIIEE P+T+A
Sbjct: 267 ANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAK 326
Query: 323 LETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEIN 382
ET ++E+AA RL K V YV A TVEYLYS + G++YFLELNPRLQVEHP TE ++ +N
Sbjct: 327 AETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVN 386
Query: 383 LPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442
LPAAQ+ + MGIP+ +I +IR YGM + + T + PKGHC
Sbjct: 387 LPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFK---TQDATKKQRRPIPKGHCT 443
Query: 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502
A R+TSEDP+DGFKP+ G + EL+F+S NVW YFSV + G IH FSDSQFGH+FAFGE+
Sbjct: 444 ACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGEN 503
Query: 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I TGWLD I
Sbjct: 504 RQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 554
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 | Back alignment and structure |
|---|
Score = 380 bits (978), Expect = e-115
Identities = 192/755 (25%), Positives = 309/755 (40%), Gaps = 122/755 (16%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ ILIAN G A + I++ R T VA+ + D A H+++AD+ V
Sbjct: 2 FNKILIANRGEIACRVIKTARKMGIST---------VAIYSDAD--KQALHVQMADEAVH 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ N +Y + ++ T AV PG+G SE + + L +G+IF+GPP ++
Sbjct: 51 IGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
A+GDKI S IAQ ANV T+P G + +EA+
Sbjct: 111 EAMGDKITSKKIAQEANVSTVP--GYM-------------------GLIEDADEAVKISN 149
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSRHL 283
+GYP MIKAS GGGGKG+R ND E R F+ + E S IFI K +Q RH+
Sbjct: 150 QIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHI 209
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q+LCD +GN L R+CS+QRR+QK++EE P T + + + A LAK V Y
Sbjct: 210 EIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYA 269
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A TVE++ +YFLE+N RLQVEHPVTE I ++L + V G PL
Sbjct: 270 SAGTVEFIVD-GQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPL------- 321
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q + + G + R+ +EDP GF P+ G++
Sbjct: 322 ------------------------SITQGD-VKLTGWAIENRLYAEDPYRGFLPSIGRLT 356
Query: 464 ELSFKSKPNVWAYFS--------------------VKSGGGIHEFSDSQFGHVFAFGESR 503
++ V GG I + D + + +R
Sbjct: 357 RYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTR 416
Query: 504 ALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPP 563
A AI M + L ++ G I N+ + ++ + + T ++ P
Sbjct: 417 AAAIEAMRIALDSFEVEG-IGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLP 475
Query: 564 ----WYLSVVGGALYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRI 619
++ A+++ + VS G++ H V ++ + ++G+ + +
Sbjct: 476 ETDLRRVAAAAAAMHRVAEIRRTRVS--------GRMDN-HERRVGTEWVVTLQGADFPV 526
Query: 620 DMVRRGPGSYTLRMNESEIEAEIH-TLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRT 678
+ GS + S + T D + +DG V+ + + G R+ G
Sbjct: 527 TIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKISGGFRIRTRGAD 586
Query: 679 CLLQ----------------NDHDPSK-LVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721
+ D SK L+ P +++ V G + +E M
Sbjct: 587 LKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM 646
Query: 722 KMCMPLLSPASGVLQ-FKMAEGQAMQAGELIARLD 755
KM L + GV+ + G ++ ++I +
Sbjct: 647 KMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 | Back alignment and structure |
|---|
Score = 351 bits (904), Expect = e-108
Identities = 154/517 (29%), Positives = 243/517 (47%), Gaps = 75/517 (14%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
+ I +L+AN G A IR R TE I VA+ + ED+ + H AD+
Sbjct: 4 RRIRKVLVANRGEIA---IRVFRA------CTELGIRTVAIYSKEDV--GSYHRYKADEA 52
Query: 106 VEV-PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPA 164
V G Y +++ I+E+A+ VDA+ PG+G SE + +GIIF+GP
Sbjct: 53 YLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNE 112
Query: 165 TSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIA 224
+ GDK+ + A A +P +P GS V E+ +A
Sbjct: 113 NHLDMFGDKVKARHAAVNAGIPVIP--GS-------------------DGPVDGLEDVVA 151
Query: 225 SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQS 280
+ GYP +IKA+ GGGG+G+R V + EV+ F++ + E GS +++ K+
Sbjct: 152 FAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211
Query: 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV 340
+H+EVQ+L D GN+ L+ RDCSVQRRHQK++E P E +++ +AA +L + V
Sbjct: 212 KHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSV 271
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
YV A TVE+L E+YF+E+NPR+QVEH +TE I I++ +Q+ + G L
Sbjct: 272 GYVNAGTVEFLV--SGDEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLH--- 326
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
Q E R G+ + RVT+EDP + F P +G
Sbjct: 327 ----------------------SHEVGIPKQ-EDIRINGYAIQSRVTTEDPLNNFMPDTG 363
Query: 461 KVQELSFKSKPNV-----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515
K+ V + G I + DS + + + A M+ L+
Sbjct: 364 KIMAYRSGGGFGVRLDAGNGF----QGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLR 419
Query: 516 EIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
E +IRG I+TN+ + +++ + + T ++D+
Sbjct: 420 EFRIRG-IKTNIPFLENVVQHPKFLSGEYDTSFIDTT 455
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-105
Identities = 158/546 (28%), Positives = 256/546 (46%), Gaps = 85/546 (15%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
PI IL+AN A++ R+ E I VA+ ED A H AD+
Sbjct: 12 GPISKILVANRSEIAIRVFRAAN---------ELGIKTVAIWAEEDK--LALHRFKADES 60
Query: 106 VEV-PGGTNNNN------YANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGII 158
+V G + Y ++ ++ +A+++ DA+ PG+G SE PE D + GII
Sbjct: 61 YQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGII 120
Query: 159 FLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYT 218
F+GP A +M LG+K+ + +A + VP +P + +
Sbjct: 121 FIGPKADTMRQLGNKVAARNLAISVGVPVVP--AT-------------------EPLPDD 159
Query: 219 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIM 274
E +GYP M+KASWGGGG+G+R + ++ ++ + + E G +++
Sbjct: 160 MAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLE 219
Query: 275 KVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAAR 334
K+ ++RH+E Q+L D +GNV L RDCSVQRR+QK++E P ++L +
Sbjct: 220 KLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSL 279
Query: 335 RLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394
++A NY+GA TVEYL +TG++YF+E+NPR+QVEH VTE + I++ AQ+ + G
Sbjct: 280 KIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGA 339
Query: 395 PLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDG 454
+ +Q E R GH + RVT+EDP+
Sbjct: 340 AIG-------------------------TPQSGVPNQ-EDIRLNGHALQCRVTTEDPEHN 373
Query: 455 FKPTSGKVQELSFKSKPNV-----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIAN 509
F P G++ S + +Y SG I + D V A+ + AI+
Sbjct: 374 FIPDYGRITAYRSASGFGIRLDGGTSY----SGAIITRYYDPLLVKVTAWAPNPLEAISR 429
Query: 510 MVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR------IAMRVRAERPP 563
M L+E +IRG + TN+ + ++ +R+N T ++D+ + + RA +
Sbjct: 430 MDRALREFRIRG-VATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQDRATKLL 488
Query: 564 WYLSVV 569
YL+ V
Sbjct: 489 TYLADV 494
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-104
Identities = 152/517 (29%), Positives = 239/517 (46%), Gaps = 77/517 (14%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ +LIAN G AV+ IR+ R + I VA+ + D +A H +IAD+
Sbjct: 1 MKKVLIANRGEIAVRIIRACR---------DLGIQTVAIYSEGDK--DALHTQIADEAYC 49
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
V + ++Y N+ I+ +A T D V PG+G +E + + + F+GP S+
Sbjct: 50 VGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+G K + ANVP +P GS + EA +
Sbjct: 110 QKMGIKDVAKAEMIKANVPVVP--GS-------------------DGLMKDVSEAKKIAK 148
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP +IKA+ GGGGKGIR ++ E+ F+ + E G+ +++ K RH+
Sbjct: 149 KIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHI 208
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q++ D YGNV L RDC++QRR QK++EE P + ET +++ AA R AK VNY
Sbjct: 209 EIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYE 268
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A T+E++Y + ++YF+E+N R+QVEHPVTE + I+L Q+ V MG L
Sbjct: 269 NAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVL------- 321
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
+ Q E + GH + R+ +E+P F P+ GK++
Sbjct: 322 ------------------------PYKQ-EDIKLTGHAIEFRINAENPYKNFMPSPGKIE 356
Query: 464 ELSFKSKPNV----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519
+ V Y + I + DS + +R AI + L E +
Sbjct: 357 QYLAPGGYGVRIESACY----TNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVV 412
Query: 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556
G I T + + I LL+ +R K +T +L+ M
Sbjct: 413 LG-IDTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIMN 448
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-104
Identities = 148/530 (27%), Positives = 245/530 (46%), Gaps = 76/530 (14%)
Query: 27 RSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAM 86
S + KKP ++LIAN G AV+ +++++ ++ VA+
Sbjct: 10 HSSGLVPRGSHMASEAQKKKPFETVLIANRGEIAVRIMKTLKRMGIKS---------VAV 60
Query: 87 ATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIP 146
+ D ++H+ AD V + G T Y ++ I+ A+ T A+ PG+G SE
Sbjct: 61 YSDPD--KYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENA 118
Query: 147 ELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206
+ D S + I+F+GP ++ LG K + IA+ A VP +P SG
Sbjct: 119 DFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGL------------- 165
Query: 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV 266
+ +EA + + YP M+K++ GGGG G++KV ++D++ +F+ VQ +
Sbjct: 166 ---------IKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQG 216
Query: 267 PGS----PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAP 322
+F+ + + +RH+E+Q++ D +G A+ RDCS+QRR+QK+IEE P P
Sbjct: 217 KSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLP 276
Query: 323 LETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEIN 382
T K+ A+ RL + Y A TVE++Y + E+YFLE+N RLQVEHP+TE + ++
Sbjct: 277 EATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLD 336
Query: 383 LPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442
L + + DFD + G +
Sbjct: 337 LVEWMLRIAANDSP-------------------------------DFDNTK-IEVSGASI 364
Query: 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNV--WAYFSVKSGGGIHEFSDSQFGHVFAFG 500
R+ +E+P F+P+ G++ +SF S V W VK G + D + G
Sbjct: 365 EARLYAENPVKDFRPSPGQLTSVSFPSWARVDTW----VKKGTNVSAEYDPTLAKIIVHG 420
Query: 501 ESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
+ R AI + L E + G TN+DY + + ++E K+ T LD
Sbjct: 421 KDRNDAIMKLNQALNETAVYG-CITNIDYLRSIASSKMFKEAKVATKVLD 469
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-05
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEG 742
D L +E + + + + G H++A +E MK M + + SG V + G
Sbjct: 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNG 1223
Query: 743 QAMQAGELIARL 754
++AG+L+A +
Sbjct: 1224 DMVEAGDLVAVI 1235
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-104
Identities = 140/517 (27%), Positives = 237/517 (45%), Gaps = 75/517 (14%)
Query: 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQF 105
K I +L+AN G A++ R+ E I VA+ + ED ++ H AD+
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAA---------ELDISTVAIYSNEDK--SSLHRYKADES 50
Query: 106 VEV-PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPA 164
V +Y N++ I+++A+ VDA+ PG+G SE + + +GI F+GP
Sbjct: 51 YLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHL 110
Query: 165 TSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIA 224
+ GDK+ + A A++P +P G+ + + E A
Sbjct: 111 EHLDMFGDKVKARTTAIKADLPVIP--GT-------------------DGPIKSYELAKE 149
Query: 225 SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQS 280
+ G+P MIKA+ GGGGKG+R V + E+ F + + E G+ ++I +
Sbjct: 150 FAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209
Query: 281 RHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCV 340
+H+EVQ++ D++GN+ L RDCSVQRRHQK++E P +++ AA +L + +
Sbjct: 210 KHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENI 269
Query: 341 NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIP 400
YV A TVE+L + E++F+E+NPR+QVEH +TE + I++ Q+ V G L+
Sbjct: 270 KYVNAGTVEFL--VSGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFG-- 325
Query: 401 EIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSG 460
Q + G+ + R+T+EDP + F P +G
Sbjct: 326 -----------------------EEINMPQQ-KDITTLGYAIQCRITTEDPLNDFMPDTG 361
Query: 461 KVQELSFKSKPNV-----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515
+ V + G I + DS + S A MV L+
Sbjct: 362 TIIAYRSSGGFGVRLDAGDGF----QGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLR 417
Query: 516 EIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552
E++IRG ++TN+ + I+++ + T +++
Sbjct: 418 EMRIRG-VKTNIPFLINVMKNKKFTSGDYTTKFIEET 453
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 | Back alignment and structure |
|---|
Score = 337 bits (868), Expect = e-103
Identities = 134/507 (26%), Positives = 230/507 (45%), Gaps = 71/507 (14%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
++ +L+AN G AV+ IR+ + E I VA+ + A H+++AD+
Sbjct: 2 VNKVLVANRGEIAVRIIRACK---------ELGIPTVAIYNEVES--TARHVKLADEAYM 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G + Y N Q I+ +A DA+ PG+G +E E GI F+GP +
Sbjct: 51 I-GTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVI 109
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK S + + A VP +P GS + + EEA A +
Sbjct: 110 ELMGDKARSKEVMKKAGVPVVP--GS-------------------DGVLKSLEEAKALAR 148
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP ++KA+ GGGG+GIR N++E+ ++Q E G + + K +H+
Sbjct: 149 EIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHI 208
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E Q+L D++GNV L RDCS+QRR+QK++E P + E + + AK + Y
Sbjct: 209 EYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYY 268
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
A T+E++ + G YF+E+N R+QVEHPV+E + I++ Q+ + G PL
Sbjct: 269 NAGTMEFIAD-QEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPL------- 320
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q E + G+ + R+ +EDP F P++ ++
Sbjct: 321 ------------------------TIKQ-EDVKFNGYAIECRINAEDPKKNFAPSTRVIE 355
Query: 464 ELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523
+ + G + + DS + + + A+ M L+ +I G +
Sbjct: 356 RYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITG-V 414
Query: 524 RTNVDYTIDLLHASDYRENKIHTGWLD 550
+T + I+++ D++ K T +L+
Sbjct: 415 KTTIPLLINIMKEKDFKAGKFTTKYLE 441
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-103
Identities = 150/517 (29%), Positives = 248/517 (47%), Gaps = 79/517 (15%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ I+IAN G A++ +R+ + +T VA+ + D + +H+ +AD+ V
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKT---------VAVHSSADR--DLKHVLLADETVC 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ + +Y N+ I+ AE+T A+ PG+G SE + + G IF+GP A ++
Sbjct: 51 IGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETI 110
Query: 168 AALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQ 227
+GDK+ + + A VP +P S + DD+ ++ A +
Sbjct: 111 RLMGDKVSAIAAMKKAGVPCVPGSDG-----------PLGDDM---------DKNRAIAK 150
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHL 283
+GYP +IKAS GGGG+G+R V D E+ + E + +++ K RH+
Sbjct: 151 RIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHV 210
Query: 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343
E+Q+L D GN L RDCS+QRRHQK++EE P E + + + + + Y
Sbjct: 211 EIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYR 270
Query: 344 GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIR 403
GA T E+L+ E GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 271 GAGTFEFLF--ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPL------- 321
Query: 404 RFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ 463
Q E +GH V R+ +EDP+ F P+ GK+
Sbjct: 322 ------------------------SIKQ-EEVHVRGHAVECRINAEDPNT-FLPSPGKIT 355
Query: 464 ELSFKSKPNV----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519
V Y +G + + DS G + +GE+R +AIA M L+E+ I
Sbjct: 356 RFHAPGGFGVRWESHIY----AGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELII 411
Query: 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMR 556
G I+TNVD I +++ +++ + +L+ ++ ++
Sbjct: 412 DG-IKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQ 447
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-100
Identities = 143/508 (28%), Positives = 236/508 (46%), Gaps = 80/508 (15%)
Query: 51 ILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110
ILIAN G A++ +R+I+ E + + + D +A +++ AD + +
Sbjct: 9 ILIANRGEIALRALRTIK---------EMGKKAICVYSEADK--DALYLKYADASICIGK 57
Query: 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170
++ +Y N+ I+ AE+ DA++PG+G SE + + I F+GP +M +
Sbjct: 58 ARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLM 117
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG 230
DK + + Q A VP +P GS + E A + +G
Sbjct: 118 SDKSKAKQVMQRAGVPVIP--GS-------------------DGALAGAEAAKKLAKEIG 156
Query: 231 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSP-IFIMKVASQSRHLEVQ 286
YP ++KA+ GGGG+G+R V N+ ++ + + E G +++ K RH+EVQ
Sbjct: 157 YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQ 216
Query: 287 LLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346
++ D +GNV + RDCS+QRRHQK+IEE P + +T +L + A + AK + Y GA
Sbjct: 217 VIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAG 276
Query: 347 TVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFY 406
T E+L + ++YF+E+N RLQVEH V+E ++ I++ + V G L
Sbjct: 277 TFEFLVD-KNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYAL---------- 325
Query: 407 GMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS 466
ES + GH + R+T+ED F P+ GK+ +
Sbjct: 326 -----------------------PSQESIKLNGHSIECRITAEDSKT-FLPSPGKITKYI 361
Query: 467 FKSKPNV----WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522
+ NV Y + + DS G + + E R AIA M + L E+ I G
Sbjct: 362 PPAGRNVRMESHCY----QDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISG- 416
Query: 523 IRTNVDYTIDLLHASDYRENKIHTGWLD 550
I+T D+ + ++ D+ N T +L
Sbjct: 417 IKTTKDFHLSMMENPDFINNNYDTNYLA 444
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 3e-39
Identities = 38/97 (39%), Positives = 59/97 (60%)
Query: 674 IDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG 733
TC+ + ++DP+ L + + KL +Y V DG H++A + YAE+EVMKM M L G
Sbjct: 4 GSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERG 63
Query: 734 VLQFKMAEGQAMQAGELIARLDLDDPSAVRKAEPFYG 770
+++ G ++AG ++ARL+LDDPS V + P G
Sbjct: 64 RVKYIKRPGAVLEAGCVVARLELDDPSKVHPSGPSSG 100
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-32
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQ 743
++DP+ L + + KL +Y V DG H++A + YAE+EVMKM M L G +++ G
Sbjct: 2 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGA 61
Query: 744 AMQAGELIARLDLDDPSAVRKAE 766
++AG ++ARL+LDD
Sbjct: 62 VLEAGCVVARLELDDLEHHHHHH 84
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 47/321 (14%), Positives = 90/321 (28%), Gaps = 55/321 (17%)
Query: 91 DMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP- 149
D A + +ADQ VP + ++ + + V A+ PEL
Sbjct: 35 DCSPLASALYMADQHYIVPKIDEVEY---IDHLLTLCQDEGVTALLTLID-----PELGL 86
Query: 150 -----DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204
+ G+ + P + DK + +
Sbjct: 87 LAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAH-----------ARTYAT 135
Query: 205 TIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQG 264
+ E + V P +K G +R+V +EV LF +
Sbjct: 136 M------------ASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK--- 180
Query: 265 EVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLE 324
+ + + ++ + L V D S+ + + + G +
Sbjct: 181 ---NTDLIVQELL-VGQELGVDAYVDLISGKV------TSIFIKEKLTMRAGETDKSRSV 230
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLP 384
+ + + VG + G Y E+NPR +P +N P
Sbjct: 231 LRDDVFELVEHVLDGSGLVGPLDFDLF--DVAGTLYLSEINPRFGGGYPHAY-ECGVNFP 287
Query: 385 AAQVAVGMGIPLWQIPEIRRF 405
A M +P+I ++
Sbjct: 288 AQLYRNLMHEIN--VPQIGQY 306
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 1e-21
Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIAS 225
S + GDKI S L+A+ A V T+P G V EEA+
Sbjct: 2 SSGSSGDKIESKLLAKKAEVNTIP--GF-------------------DGVVKDAEEAVRI 40
Query: 226 CQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS----PIFIMKVASQSR 281
+ +GYP MIKAS GGGGKG+R +D+E R F+ E S + I K R
Sbjct: 41 AREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPR 100
Query: 282 HLEVQLL 288
H+
Sbjct: 101 HISGPSS 107
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Length = 522 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-17
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 1777 LTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1835
+TG +LG EV S LGG + +GVVH V + E I+ + LSY+P +
Sbjct: 200 VTGPEITKVVLGEEV--SFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLPSNN 257
Query: 1836 GGALPIISPLDPPDRPVEYL----PENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVE 1888
P I DP DR + P ++ + R I I D F+E
Sbjct: 258 MEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREII-----------YKIVDNGEFLE 306
Query: 1889 TLEGWARTVVTGRARLGGIPVGIVA 1913
+ WA+ ++ G AR+ G VGIVA
Sbjct: 307 VHKHWAQNIIVGFARIAGNVVGIVA 331
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 1788 GREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLD 1846
G +V + +LGG + MA +G +H DD K LS++P + ++P +
Sbjct: 213 GEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNN 270
Query: 1847 PPDRPVE---YLPENSCDP---RAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTG 1900
E +P + R I I D ++E G+A +VT
Sbjct: 271 DVSPNTELRDIVPIDGKKGYDVRDVI-----------AKIVDWGDYLEVKAGYATNLVTA 319
Query: 1901 RARLGGIPVGIVA 1913
AR+ G VGIVA
Sbjct: 320 FARVNGRSVGIVA 332
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Length = 531 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 2e-16
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 1777 LTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1835
+TG + + +V S +LGG + V +D+E ++ + + + ++P +
Sbjct: 213 VTGPDVVKTVTNEQV--SAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFLPLNN 270
Query: 1836 GGALPIISPLDPPDRPVEYL----PENSCDP---RAAICGFLDNNGKWIGGIFDKDSFVE 1888
P+ D PDR L P+N P + I + D+ F E
Sbjct: 271 REKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELI-----------HKLADEGDFYE 319
Query: 1889 TLEGWARTVVTGRARLGGIPVGIVA 1913
E +A+ ++TG RL G VG+VA
Sbjct: 320 IQEEFAKNIITGFIRLEGRTVGVVA 344
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 4e-16
Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 38/296 (12%)
Query: 1797 QLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYL 1855
G I G +DL I I K++SY+P + + +P P P E L
Sbjct: 254 APGSVPIHYDETGFFREVYQNDLGVIDGIKKYISYLPAYNLEFFRVDTP-KAPQLPAEDL 312
Query: 1856 ----PENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIP 1908
P N D I +FD F E +G+ +VTG A++ G+
Sbjct: 313 YSIIPMNQKRPYDIYEVI-----------ARLFDNSEFSEYKKGYGPEMVTGLAKVNGLL 361
Query: 1909 VGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFI 1968
VG++A +M + G + K + + R+ +PL
Sbjct: 362 VGVIANVQGLLMNYPEYKQNSV--------GIGGKLYRQGLIKMNEFVTLCARDRIPLIW 413
Query: 1969 LANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR---GGAWVVVDSR 2025
L + G G +L G +++ ++ K P +R A V+
Sbjct: 414 LQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEIT-----IRKASAAAHYVLGGP 468
Query: 2026 -INSDHIEMYADRTAKGNVLEPEGMIEIKFRTK-ELLECMGRLDQKLIDLMAKLQE 2079
N+ ++ + V+ E + K + G Q +I M + +
Sbjct: 469 QGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQ 524
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 1603 SGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
G+ + IVA+D AG++ P + + +D A LPLIYL SG ++V
Sbjct: 104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKV 161
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 5e-16
Identities = 36/223 (16%), Positives = 71/223 (31%), Gaps = 27/223 (12%)
Query: 1779 GFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGG 1837
+ + ++ R G I G + + + + I K++ +P +
Sbjct: 235 YANEIADMVDRTG--KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLPKYDPE 292
Query: 1838 ALPIISPLDPPDRPVE---YLPENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVETLE 1891
+ P P + +P N D I +FD E +
Sbjct: 293 FFRVDDPKAPAFPADDLYSMVPLNDKRAYDIYNVI-----------ARLFDNSELHEYKK 341
Query: 1892 GWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK 1951
G+ +VTG A++ G+ VG+VA +M G + K
Sbjct: 342 GYGPEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAG-------SVGIGGKLYRQGLVK 394
Query: 1952 TAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIV 1994
+ + R+ LP+ + + G G +L G +++
Sbjct: 395 MNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLI 437
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 1603 SGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
+G+ ++VA+D AG++ P + L +D A +PL+Y+ SG + E+V
Sbjct: 103 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKV 160
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Length = 527 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 5e-16
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 1777 LTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1835
+TG + + + G E+ S LGG + +G H +D + +S + LSY+P +
Sbjct: 206 ITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLPSNN 263
Query: 1836 GGALPIISPLDPPDRPVE---YLPENSC---DPRAAICGFLDNNGKWIGGIFDKDSFVET 1889
P+ P + P + LP+N D R I + D F E
Sbjct: 264 AEEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVI-----------KRVVDHGEFFEV 312
Query: 1890 LEGWARTVVTGRARLGGIPVGIVA 1913
+A+ +V G AR+ G VGIVA
Sbjct: 313 QPYFAKNIVIGFARIQGKTVGIVA 336
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 4e-15
Identities = 52/433 (12%), Positives = 124/433 (28%), Gaps = 90/433 (20%)
Query: 123 IVEMAEMTRVDAVWPGWGHASEI-PELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQ 181
IV++AEM DA+ + + L G+ G + DK
Sbjct: 94 IVKVAEMFGADAITTNNELFIAPMAKACERL---GL--RGAGVQAAENARDKNKMRDAFN 148
Query: 182 AANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG 241
A V + ++ VT T E+ A+ + +G P ++K ++
Sbjct: 149 KAGVKS-----------IKNKRVT------------TLEDFRAALEEIGTPLILKPTYLA 185
Query: 242 GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQY--------- 292
G+ + + + F +V + + + + + +++
Sbjct: 186 SSIGVTLITDTETAEDEFNRVNDYLKSINV----PKAVTFEAPF--IAEEFLQGEYGDWY 239
Query: 293 --GNVAALHSRDCSVQRRHQKII------------EEGPITVAPL--ETVKKLEQAARRL 336
+ S + + I E IT + L E KK+ +AA++
Sbjct: 240 QTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKA 299
Query: 337 AKCVNYV-GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE---INLPAAQVAVGM 392
+ + A E M+ E +E R + I + +++ + V
Sbjct: 300 NEGLGLQNCATHTEIKL-MKNREPGLIESAARF-AGWNMIPNIKKVFGLDMAQLLLDVLC 357
Query: 393 GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPD 452
+P+ G+ D + P+ ++ D
Sbjct: 358 FGKDADLPD----------GLLDQEPYYVADCHLY---------PQHFKQNGQIPETAED 398
Query: 453 DGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEF---SDSQFGHVFAFGESRALAIAN 509
+ + K + ++ + G + + + G + +
Sbjct: 399 LVIEAIDIP--DGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFELKGSNSQDVAES 456
Query: 510 MVLGLKEIQIRGE 522
+ + ++ +
Sbjct: 457 IRQIQQHAKLTAK 469
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Length = 530 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 4e-15
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 1788 GREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLD 1846
G +V +LGG + +T+GV H D+ + + + + LSY+P + P
Sbjct: 216 GEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPEEA 273
Query: 1847 --PPDRPVEYL----PENSCDP---RAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTV 1897
L P+++ P + I + D F ET +A +
Sbjct: 274 DLAVTDEDAELDTIVPDSANQPYDMHSVI-----------EHVLDDAEFFETQPLFAPNI 322
Query: 1898 VTGRARLGGIPVGIVA 1913
+TG R+ G PVGIVA
Sbjct: 323 LTGFGRVEGRPVGIVA 338
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 7e-15
Identities = 60/445 (13%), Positives = 125/445 (28%), Gaps = 104/445 (23%)
Query: 95 NAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLST 154
+ + +AD+ + + +N + + + +D + I L
Sbjct: 42 HKPCLNLADEISYM-------DISNPDEVEQKVKDLNLDGAATCCL-DTGIVSLARICDK 93
Query: 155 KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQA 214
+ + +G + GDK + NV T +V
Sbjct: 94 ENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNT-----------ARHFVVR--------- 131
Query: 215 CVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI--- 271
E + + + P ++KA+ G KGI ++E F +
Sbjct: 132 ---NENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVE 188
Query: 272 -FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITV-------APL 323
FI + Q + +V + H V +
Sbjct: 189 EFI-----EGYEFGAQAFVYK-NDVLFVMP--------HGDETYMSHTAVPVGHYVPLDV 234
Query: 324 --ETVKKLEQAARRLAKCVNYV-GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAE 380
+ ++K + ++ K + A V+ + E Y +EL R+ + E
Sbjct: 235 KDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIELTGRVG-----ANCLPE 287
Query: 381 INLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440
+ V + GI Y ++ P F +S K
Sbjct: 288 L------VEINYGIEY-----------------YKMIASMAISENPLVFWSQKSKENKAG 324
Query: 441 CVAVRVTSEDPDDGFKPTSGKVQEL--SFKSKPNVW-AYFSVKSGGGIHEFSDSQ--FGH 495
+ + +E G ++E+ S ++ F + I +F +S G
Sbjct: 325 LARMIIETEKS--------GILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQ 376
Query: 496 VFAFGESRALAIANMVLGLKEIQIR 520
+ E+ + + + I I
Sbjct: 377 IIVKEETLDKCKDKLDVIINNINII 401
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Length = 548 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 1e-14
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 1788 GREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLD 1846
G EV + +LGG MA +G H S + + + + LSY+PP+ P
Sbjct: 227 GEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAA 284
Query: 1847 PPDRPVEYLPENSCDPRAAICGFLDNNGK------WIGGIFDKDSFVETLEGWARTVVTG 1900
P E L + + I D+ + I + D D F+E G+A+ +V G
Sbjct: 285 PTGPIEENLTDEDLELDTLIP---DSPNQPYDMHEVITRLLD-DEFLEIQAGYAQNIVVG 340
Query: 1901 RARLGGIPVGIVA 1913
R+ G PVGIVA
Sbjct: 341 FGRIDGRPVGIVA 353
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-13
Identities = 97/679 (14%), Positives = 204/679 (30%), Gaps = 224/679 (32%)
Query: 689 KLVAETPCK----LLRYLVSDG--SHIDADTPYAEVEVMKMCMPLLS-PASGVLQFKMAE 741
V CK + + ++S HI + A +++ LLS V +F + E
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEE 85
Query: 742 GQAMQAGELIARL--DLDDPSAVRKA-----EPFYGSFPILGPPTAISGKVH---QRCAA 791
+ L++ + + PS + + + Y + + + ++
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 792 SLNAAR------M------ILAGYEHNIEEVVQ---------------NLLNCLDSPELP 824
L A+ + +A +V NL NC +SPE
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVAL------DVCLSYKVQCKMDFKIFWLNLKNC-NSPETV 198
Query: 825 LLQWQECMAVLSTRLPKDLKNELESKCKEFERISSSQNV--------DFPAKLL------ 870
L Q+ L ++ + + + RI S Q + LL
Sbjct: 199 LEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 871 -RGVLEAHLLSCADKERGSQERLIEPLMSLVKSYEGGRESHARVIVQSLFEEYLSVEEL- 928
A LSC ++ L+ + R + + ++S++
Sbjct: 255 NAKAWNAFNLSC---------KI------LLTT----RFKQVTDFLSAATTTHISLDHHS 295
Query: 929 --FSDQIQADVIERLRLQYKKDLLKVVDIV---LSHQGVKRKNKLILRLMEQLVYPNPAA 983
+ E L LLK +D L + V N L ++ +
Sbjct: 296 MTLTPD------EVKSL-----LLKYLDCRPQDLPRE-VLTTNPRRLSII-------AES 336
Query: 984 YRDKLIRFSALNHTNYSEL--ALKASQLLEQTKLSELRSSIARSLSELEMFTED------ 1035
RD L + H N +L +++S L + +E R + L +F
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYR----KMFDRLSVFPPSAHIPTI 390
Query: 1036 --------------GESMDTPKRKSAIDERMEDLVSAPLAVEDALVGLFDHSDH--TLQR 1079
++ + S ++++ ++ +++ + L ++ L R
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKLENEYALHR 447
Query: 1080 RVVETY-VRRLYQP-YLVKGSVRMQWHRCGLIASWEFLEEHIERKNGPEDQTPEQPLVEK 1137
+V+ Y + + + L+ + ++ + H++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFY--------SHIGHHLKNIE-------------- 485
Query: 1138 HSERKWGAMVIIKSLQSFPDI------LSAALRETAHSRNDSISKGS--AQTASYGNMMH 1189
H ER + F + L +R + + N S S + Q Y +
Sbjct: 486 HPER----------MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--Y 533
Query: 1190 IALVGMNNQMSLLQDSGDEDQAQER-INKLAKILKEQEVGSGLHSAGVGVISCIIQRDEG 1248
I D D ER +N + L ++ L + + +++
Sbjct: 534 IC---------------DNDPKYERLVNAILDFL--PKIEENLICSK---YTDLLR---- 569
Query: 1249 RAPMRHSFHWSPEKFYYEE 1267
A M + ++ +EE
Sbjct: 570 IALM------AEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 7e-06
Identities = 99/743 (13%), Positives = 202/743 (27%), Gaps = 250/743 (33%)
Query: 282 HLEVQLLCDQYGNVAAL-HSRDCSVQRRHQKIIEEGPITVAPLETVKKL------EQAAR 334
H++ + QY L D V K +++ P ++ E + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 335 RLAKCVNYVGAATVE-YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393
RL + V+ ++ + Y FL ++ E P+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFL-----------MSPIKTEQRQPSM------- 107
Query: 394 IPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDD 453
+ R Y + +Y+ F K + V+ P
Sbjct: 108 --------MTRMYIEQRDRLYND-------NQVF---------AKYN-----VSRLQPYL 138
Query: 454 GFKPTSGKVQELSFKSKPNVWAYFSVKSG-GGIHEFSDSQFGHVFAFGESRALAIANMVL 512
+ + EL + NV G G G++ +A V
Sbjct: 139 KLRQ---ALLEL--RPAKNVLID-----GVLG--------------SGKT---WVALDVC 171
Query: 513 GLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGA 572
++Q + + KI WL+ + P L ++
Sbjct: 172 LSYKVQCK-------------------MDFKIF--WLNLK-----NCNSPETVLEMLQKL 205
Query: 573 LYKASASSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYR-----IDMVRRGPG 627
LY+ + ++ + I + +++ ++ Y + V+
Sbjct: 206 LYQ-------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---- 254
Query: 628 SYTLRMNESEIEA-EIH-----TLRDGGLLMQLDGN--SHVV-------YAEEEAAGTRL 672
N A + T R + L +H+ +E L
Sbjct: 255 ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--L 306
Query: 673 LIDGRTCLLQNDHD-PSKLVAETP--CKLLRYLVSDG-SHIDADTPYAEV------EVMK 722
L+ L D P +++ P ++ + DG + D + V +++
Sbjct: 307 LLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIE 360
Query: 723 MCMPLLSPA-------------------SGVLQ---FKMAEGQAMQ-AGELIARLDLDDP 759
+ +L PA + +L F + + M +L ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 760 SAVRKAEPFYGSFPILGPPTAISGKVHQRCAASLNAARMILAGYEHNIEEVVQNLLNCLD 819
++ + S P + + KV +L+ R I+ Y N+ D
Sbjct: 419 ---KQPKESTISIPSI----YLELKVKLENEYALH--RSIVDHY---------NIPKTFD 460
Query: 820 SPELPLLQWQECMAVLSTRLPKD----------LKN-ELESKCKEFERISSSQNVDF-PA 867
S +L D LKN E + F + + F
Sbjct: 461 SDDLIPPYL-------------DQYFYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQ 505
Query: 868 KLLR-GVLEAHLLSCAD-------------KERGSQERLIEPLMSLVKSYEGG--RESHA 911
K+ S + ERL+ ++ + E +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 912 RVIVQSLFEEYLSVEELFSDQIQ 934
++ +L E ++ E Q+Q
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 7e-05
Identities = 75/650 (11%), Positives = 171/650 (26%), Gaps = 241/650 (37%)
Query: 936 DVIERLRLQYKKDL--------LKVV-------DIVLSHQGVKRKNKLIL---------- 970
D++ + + K + I++S V +L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 971 -RLMEQLVYPN--------------PAA-------YRDKLIR----FSALN---HTNYSE 1001
+ +E+++ N P+ RD+L F+ N Y +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 1002 LALKASQLLEQTKL----------SELRSSIARSLSELEMFTEDGE----SMDTPKRKSA 1047
L +L + + + + S D + ++ K ++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNL---KNCNS 194
Query: 1048 IDERMEDLVSAPLAVEDALVGLFDHSDHTLQR-RVVETYVRRL--YQPY----LVKGSVR 1100
+ +E L ++ DHS + R ++ +RRL +PY LV +V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 1101 MQWH------RCG-LIASWEFLEEHIERKNGPEDQTPEQPLVEKHSERKWGAMVIIKSLQ 1153
C L+ + R D + + +
Sbjct: 255 NAKAWNAFNLSCKILLTT---------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 1154 SFPDILS---AALRETAHSRNDSISKGSAQTASYGNMMHIALVGMNNQMSLLQDSGD--E 1208
L L + N ++++ ++D +
Sbjct: 306 LLLKYLDCRPQDLPREVLT---------------TNPRRLSIIA-----ESIRDGLATWD 345
Query: 1209 DQAQERINKLAKILKEQEVGSGLHSAGVGVISCIIQRDEGRAPMRHSFH----------- 1257
+ +KL I++ S + + A R F
Sbjct: 346 NWKHVNCDKLTTIIE----------------SSLNVLEP--AEYRKMFDRLSVFPPSAHI 387
Query: 1258 --------WSPEKFYYEEEPLLRHL-----------EPPLSIY-LELDKLKGYDNI---- 1293
W + + ++ L E +SI + L+ +N
Sbjct: 388 PTILLSLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 1294 -----QYTLSRDRQW------------------HLYTV--VDKPLPIRRMFLRTLVRQPT 1328
Y + + HL + ++ R +FL
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-------- 498
Query: 1329 SNDGFMSYPVSDMGTNRAQWTMSFTSRGVLRSLMAAMEELELNVHNASVKSDHAQMYLCI 1388
+ F+ + T W + G + + + +L + + + +
Sbjct: 499 -DFRFLEQKIRHDSTA---W----NASGSILNTL-----QQLKFYKPYICDNDPK----- 540
Query: 1389 LREQKINDLVPYPKRVDVD------------AGQEETAIEALLEELAREI 1426
E+ +N ++ + +++ + A E EA+ EE +++
Sbjct: 541 -YERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-04
Identities = 84/610 (13%), Positives = 166/610 (27%), Gaps = 156/610 (25%)
Query: 1266 EEEPLLRHLEPPLSIYLELDKLKGYDNIQY------TLSRDRQW---HLYTVVDKPLPIR 1316
E + ++ + L L + ++ + T +P +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 1317 RMFLRTLVRQPTSNDGFMSYPVS--DMGTNRAQWTMSFTS-RGVL--------RSLMAAM 1365
RM++ R N F Y VS Q + + VL ++ +A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 1366 --------EELELNVH--N-ASVKSDHAQMY----LCILREQKINDLVPYPKRVDVDAGQ 1410
+++ + N + S + L + + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 1411 EETAIEALLEELAREIHATVGVRMHK--LGVCE--WEVKLWMAYSGQANGAWRVVVT--- 1463
+ + LL+ + ++ L V K W A++ ++++T
Sbjct: 230 IQAELRRLLKS-----------KPYENCLLVLLNVQNAKAWNAFNLSC----KILLTTRF 274
Query: 1464 -NVTGH-TCAVYIYRELEDTSKHTVVYHSVAVRGLLHGVEVNAQYQSLGVLDQKRLLARR 1521
VT + A + L+ S V+ LL +Y L Q L R
Sbjct: 275 KQVTDFLSAATTTHISLDHHSM---TLTPDEVKSLL------LKY--LDCRPQD--LPRE 321
Query: 1522 SNTTYCYDFPLAFET--ALEQSWASQFPNMR--PKDK---------ALLKVTELK----- 1563
TT P + + + N + DK +L+ E +
Sbjct: 322 VLTT----NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 1564 ---FADDSGTWGTPLVLVERSPGLNNIGMVAWC-MEMFTPEFPSGRTILIVANDVTFKAG 1619
F ++L + W + ++V +
Sbjct: 378 LSVFPPS--AHIPTILLS-----------LIWFDVIKSDVM-------VVVNKLHKYSLV 417
Query: 1620 SFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFN 1679
P+E + + K+ L A I + F+ +D+L P
Sbjct: 418 EKQPKESTISI--PSIYLELKVKLENEYALH-RSIVDHYNIPKTFD---SDDLIPPYLDQ 471
Query: 1680 YVYLTPEDYARIGSSVIAHEMK-LESGET-----------RWVVDSIVGKEDGLGVENLT 1727
Y Y S I H +K +E E R++ I + D
Sbjct: 472 YFY-----------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDST---AWN 515
Query: 1728 GSGAIAGAYS--RAYKETFTL--TYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSAL 1783
SG+I + YK I +L ++ I ++ A
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 1784 NKLLGREVYS 1793
++ + E +
Sbjct: 576 DEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-04
Identities = 84/625 (13%), Positives = 178/625 (28%), Gaps = 161/625 (25%)
Query: 1625 EDAFFLAVTDLACAKKLPLIYLAANSGAR----IGVAEEVKACFEIGWTDELNPDRG--- 1677
EDAF V + C K + + + S I + V + WT +
Sbjct: 26 EDAF---VDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 1678 FNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYS 1737
F L +Y + S I E + S TR ++ + L + Y+
Sbjct: 82 FVEEVLRI-NYKFLMSP-IKTEQRQPSMMTRMYIEQ---------RDRLYNDNQVFAKYN 130
Query: 1738 RAYKETFT-LTYVTGRTVGIGAYLARLGMRCIQRLDQP---IILTGFSALNK-LLGREVY 1792
+ + + L + + L +P +++ G K + +V
Sbjct: 131 VSRLQPYLKLR------------------QALLEL-RPAKNVLIDGVLGSGKTWVALDVC 171
Query: 1793 SSHMQLGGPKIMATNGVVHLTVS--DDLEGISAILKWLSY--VPPHIGGALPIISPLDPP 1848
S+ + + L + + E + +L+ L Y P + +
Sbjct: 172 LSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 1849 ----DRPVEYLPENSCDPRAAICGFLDN-NGKWIGGIFDKDSFVETLEGWARTVVTGRAR 1903
L + L N F+ + ++T R +
Sbjct: 228 HSIQAELRRLLKSKP-YENCLL--VLLNVQNAKAWNAFNLSC---------KILLTTRFK 275
Query: 1904 LGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKT--AQALMDFNR 1961
QV +H + + K+ + L D
Sbjct: 276 -----------------QVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYL-DCRP 315
Query: 1962 EEL--------PLFI----------LANWRGFSGGQRDLFEGILQAGSTIVENL------ 1997
++L P + LA W + D I+++ + L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLEPAEYR 372
Query: 1998 RTYKQ-PVF---VYIPM--MAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLE---PEG 2048
+ + + VF +IP ++ + W V + + ++ K +++E E
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLI----WFDVIKSD----VMVVVNKLHKYSLVEKQPKES 424
Query: 2049 MIEI---KFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVES----------LQQQ 2095
I I K LE L + ++D + ++ + L+
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 2096 IKAREKQLLPT-YTQVATKFAE---LHDTSLRMAAKGVIKEVVDWDKSRSFFCR---RLR 2148
L + +F E HD++ A+ ++ + + + C +
Sbjct: 485 EHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 2149 RRVAESSLVKTLTAAAGDYLTHKSA 2173
R V ++++ L + + K
Sbjct: 543 RLV--NAILDFLPKIEENLICSKYT 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-04
Identities = 62/518 (11%), Positives = 137/518 (26%), Gaps = 177/518 (34%)
Query: 46 KPIHSILIANNGMA-------AVKFIRSIRT---------WAYETFGT-EKAILLVAMAT 88
+P ++LI +G+ A+ S + W ++ M
Sbjct: 148 RPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQ 203
Query: 89 PEDMRINAEHIRIADQFVEVPGGTN-----------NNNYANVQLIVEMAEMTRVDAVWP 137
+I+ +D + + + Y N L+V + V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLV-------LLNVQ- 254
Query: 138 GWGHASEIPELPD----TLST---KGII-FLGPPATSMAALGDKIGS-------SLIAQA 182
++ + L T K + FL T+ +L + SL+ +
Sbjct: 255 ----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 183 ANVPTLPWSGSHVKIPPESCLV----------TIPDDV-----YRQACVYTTEEAIASCQ 227
+ +P E +I D + ++ I S
Sbjct: 311 LDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQ-------VQGEVP----------GSP 270
V E R +F + +P
Sbjct: 364 --------------------NVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIK 401
Query: 271 IFIMKVASQSRHLEVQLLCDQYGN--VAALHSRDCSVQRR-------HQKIIEEGPITVA 321
+M V ++ L L ++ ++ S ++ + H+ I++
Sbjct: 402 SDVMVVVNK---LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH------ 452
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYL-YSMETGEYY---------FLELNPRLQVE 371
K + Y ++ + ++ E+ FL+
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLDFR------ 501
Query: 372 HPVTEWIAE--INLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429
++ + + A A G + Q + + Y ++ Y+ ++ DF
Sbjct: 502 -----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-----LVNAILDF 551
Query: 430 -DQAEST--RPKGHCVAVRVTSEDPDDG-FKPTSGKVQ 463
+ E K + +R+ D+ F+ +VQ
Sbjct: 552 LPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 70/363 (19%), Positives = 114/363 (31%), Gaps = 88/363 (24%)
Query: 1798 LGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYL- 1855
LGG + +GV DD ++ + ++ + G L +P P P E L
Sbjct: 252 LGGADVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQGQLQCRAP-RAPLYPAEELY 310
Query: 1856 ---PENS---CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPV 1909
P +S D R I + D F E + T+V G A L G P+
Sbjct: 311 GVIPADSKQPYDVREVI-----------ARLVDGSEFDEFKALFGTTLVCGFAHLHGYPI 359
Query: 1910 GIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFIL 1969
I+A ++ F ++A K A + + +PL L
Sbjct: 360 AILA--NNGIL------------------------FAEAAQKGAHFIELACQRGIPLLFL 393
Query: 1970 ANWRGFSGGQRDLFEGILQAGS---TIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRI 2026
N GF GQ+ GI + G+ T V R K V + A G D R
Sbjct: 394 QNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRF 453
Query: 2027 NSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTL 2086
++ A+ V+ E + + K + + A +
Sbjct: 454 ------LWMWPNARIGVMGGEQAAGVLAQVKR----------------EQAERAGQQLGV 491
Query: 2087 AMVESLQQQIKAR-EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCR 2145
++ I + E Q P Y+ +A+ V+D ++R
Sbjct: 492 EEEAKIKAPILEQYEHQGHPYYS----------------SARLWDDGVIDPAQTREVLAL 535
Query: 2146 RLR 2148
L
Sbjct: 536 ALS 538
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 1603 SGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
G +IV ND T K G++ P L +A +LP IYL + GA + +EV
Sbjct: 119 EGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEV 176
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 7e-08
Identities = 37/321 (11%), Positives = 84/321 (26%), Gaps = 64/321 (19%)
Query: 90 EDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWP-GWGHASEIPEL 148
+ + E ++ +++ +E + DA + L
Sbjct: 33 DGFKNYYEITGFVRPEFSCLFTLPVDSMDSMEKYLE-----KSDAFLIIAPEDDFLLYTL 87
Query: 149 PDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208
LG + ++A DK + V++P T
Sbjct: 88 TKKAEKYCE-NLGSSSRAIAVTSDKWELYKKLRG-----------EVQVPQ-----TSLR 130
Query: 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268
+ +IK G+GI + Q + G
Sbjct: 131 PL-------------------DCKFIIKPRTACAGEGIGFSDEVPDGHI----AQEFIEG 167
Query: 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKK 328
+L V L + +++ + + R ++ P ++ +
Sbjct: 168 ------------INLSVSLAVGEDVKCLSVNEQIINNFRYAGAVV---PARISDEVKREV 212
Query: 329 LEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQV 388
+E+A R + G V+ +Y + + Y +E+N RL ++
Sbjct: 213 VEEAVRAVECVEGLNGYVGVDIVY---SDQPYVIEINARLTTPVVAFSRAYGASVADLLA 269
Query: 389 AVGMGIPLWQIPEIRRFYGME 409
+ Q+ +
Sbjct: 270 GGEVKHVRRQMVRKSKSAEKP 290
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 9e-08
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
V E A+ + +GYP +++AS+ GG+ + V+++ ++R F+ +P+ +
Sbjct: 695 VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754
Query: 276 VASQSRHLEVQLLCDQYG-NV-----------AALHSRD--CSVQRRHQKIIEEGPITVA 321
+ ++V +CD G V A +HS D CS+ T++
Sbjct: 755 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLP----------AYTLS 802
Query: 322 PLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367
E + Q ++LA + G V+ ++++ E Y +E+NPR
Sbjct: 803 Q-EIQDVMRQQVQKLAFELQVRGLMNVQ--FAVKNNEVYLIEVNPR 845
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEG 742
+A + + V G + A + MKM + SP G V + EG
Sbjct: 11 QETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG 70
Query: 743 QAMQAGELIARLDLDD 758
+ + ++
Sbjct: 71 AQANRHTPLVEFEEEE 86
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQA 744
++ A P K++ V G+ + P + MKM + SP G V + + +
Sbjct: 648 VKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT 707
Query: 745 MQAGELIARLD 755
++ +LI ++
Sbjct: 708 LEGDDLILEIE 718
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 44/282 (15%), Positives = 89/282 (31%), Gaps = 58/282 (20%)
Query: 100 RIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDT-----LST 154
++A + N + + + E + DA+ P EI E +
Sbjct: 58 QVAHRSYVG-------NMMDKDFLWSVVEREKPDAIIP------EI-EAINLDALFEFEK 103
Query: 155 KGIIFLGPPATSMAALGDKIGS-SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQ 213
G + P A + + + + A VPT +
Sbjct: 104 DGYFVV-PNARATWIAMHRERLRETLVKEAKVPTSRY----------------------- 139
Query: 214 ACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQ--GEVPGSPI 271
T +E +C+ +GYP KA GKG V +++ +++ + I
Sbjct: 140 MYATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKI 199
Query: 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK--IIEEGPITVAPLETVKKL 329
+ + + + N + + +Q + P E +K
Sbjct: 200 IVEEHIDFDVEVTELAVRHFDENGEIVTT-FPKPVGHYQIDGDYHA---SWQPAEISEKA 255
Query: 330 EQAARRLAKCV----NYVGAATVEYLYSMETGEYYFLELNPR 367
E+ R+AK + +G VE ++ + + E++PR
Sbjct: 256 EREVYRIAKRITDVLGGLGIFGVEMF--VKGDKVWANEVSPR 295
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAG 748
+ + L + V G I+ A +E MKM +P+++ SG V + K EG + G
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEG 61
Query: 749 ELIARLDLDD 758
+++ L
Sbjct: 62 DVLLELSNST 71
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 72/274 (26%)
Query: 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELP-DTLST--KGIIFLGPPATSMAALGD 172
N + + + E+ + + P EI + D L + + + P A + +
Sbjct: 59 NMLDGDALRRVVELEKPHYIVP------EIEAIATDMLIQLEEEGLNVVPCARATKLTMN 112
Query: 173 KIGS-SLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
+ G L A+ +PT + + + +GY
Sbjct: 113 REGIRRLAAEELQLPTSTY-----------------------RFADSESLFREAVADIGY 149
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSP--------------IFIMKVA 277
P ++K GKG + + +++ +K Q I ++ V
Sbjct: 150 PCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTV- 208
Query: 278 SQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLA 337
++ C G+ Q E + P + + A+ +A
Sbjct: 209 ---SAVDGVHFCAPVGH----------RQEDG--DYRE---SWQPQQMSPLALERAQEIA 250
Query: 338 KCV----NYVGAATVEYLYSMETGEYYFLELNPR 367
+ V G VE E F E++PR
Sbjct: 251 RKVVLALGGYGLFGVELFVC--GDEVIFSEVSPR 282
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAM 745
+ + A P K+LR LV G + +E MKM + SP G V + + EG+A+
Sbjct: 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAV 64
Query: 746 QAGELIARL 754
G+ + L
Sbjct: 65 DTGQPLIEL 73
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 26/185 (14%)
Query: 184 NVP--TLPWSGSHVKIPPESCLVTIPDDVYRQ--------------ACVYTTEEAIASCQ 227
NVP + + P + + + D R+ V E+ +
Sbjct: 69 NVPVEAARRLEGRLPLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLK 128
Query: 228 VVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286
VG PA++K GG GKG V ++E K + G + + R + +
Sbjct: 129 RVGLPALLKTRRGGYDGKGQALVRTEEEALEALK----ALGGRGLILEGFVPFDREVSLL 184
Query: 287 LLCDQYGNVAALHSRDCS--VQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG 344
+ + G VA + P A KK E A R + ++YVG
Sbjct: 185 AVRGRTGEVAFY---PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVG 241
Query: 345 AATVE 349
+E
Sbjct: 242 VLALE 246
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAGELIA 752
T +++R+ V +G ++ D EV K+ + + SP G +++ EGQ + G +
Sbjct: 14 TEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLL 73
Query: 753 RLD 755
++D
Sbjct: 74 QID 76
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQA 744
++ A + + LV +G + A +E MKM + +P G V + + E A
Sbjct: 7 GEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA 66
Query: 745 MQAGELIARL 754
+Q G+ + ++
Sbjct: 67 VQGGQGLIKI 76
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQA 744
S L + P ++ V G + +E MKM + + +G V G
Sbjct: 24 TSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT 83
Query: 745 MQAGELIARLD 755
+ G+L+ L+
Sbjct: 84 VGEGDLLVELE 94
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 698 LLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIARLDL 756
++++ V G ++ D EV+ K + + SP G + + + EG G+ + LD
Sbjct: 19 IVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 78
Query: 757 DDPSAVRKAEP 767
+
Sbjct: 79 PGYENMTFKGQ 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2267 | |||
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 100.0 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 100.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 100.0 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 100.0 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 100.0 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 100.0 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 100.0 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 100.0 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 100.0 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 100.0 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 100.0 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 100.0 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 100.0 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 100.0 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 100.0 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 100.0 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 100.0 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 100.0 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 100.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 100.0 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 100.0 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 100.0 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 100.0 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 100.0 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 100.0 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 100.0 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 100.0 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 100.0 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 100.0 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 100.0 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 100.0 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 100.0 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 100.0 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 100.0 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 100.0 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 100.0 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 100.0 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 100.0 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 100.0 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 99.98 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 99.96 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 99.95 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 99.95 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 99.95 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 99.95 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 99.95 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.94 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.94 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 99.94 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.94 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 99.94 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 99.94 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.93 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 99.93 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 99.93 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 99.93 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 99.92 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 99.92 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.92 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.92 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.91 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 99.9 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 99.89 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.86 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 99.85 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.81 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.75 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.73 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.67 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.64 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.64 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 99.63 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 99.62 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.62 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 99.62 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 99.61 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 99.61 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 99.61 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 99.6 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 99.59 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 99.58 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 99.57 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 99.52 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.47 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.43 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.43 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.41 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 99.41 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.4 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 99.28 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 99.27 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.26 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 99.26 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 99.25 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 99.24 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 99.23 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 99.21 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 99.2 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 99.16 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 99.16 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 99.15 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 99.15 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.14 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.14 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 99.14 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.13 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.12 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.09 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 99.09 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 99.07 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 99.06 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 99.05 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 99.02 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 98.83 | |
| 1zko_A | 136 | Glycine cleavage system H protein; TM0212, structu | 98.82 | |
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 98.71 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 98.7 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 98.68 | |
| 1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitoch | 98.62 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 98.53 | |
| 1hpc_A | 131 | H protein of the glycine cleavage system; transit | 98.44 | |
| 1onl_A | 128 | Glycine cleavage system H protein; hybrid barrel-s | 98.32 | |
| 3a7l_A | 128 | H-protein, glycine cleavage system H protein; lipo | 98.27 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 97.53 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 97.35 | |
| 3ne5_B | 413 | Cation efflux system protein CUSB; transmembrane h | 97.25 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 97.25 | |
| 3lnn_A | 359 | Membrane fusion protein (MFP) heavy metal cation Z | 97.25 | |
| 3klr_A | 125 | Glycine cleavage system H protein; antiparallel be | 97.24 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 97.2 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 97.17 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 97.07 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 96.95 | |
| 1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, | 96.9 | |
| 3mxu_A | 143 | Glycine cleavage system H protein; seattle structu | 96.87 | |
| 3tzu_A | 137 | GCVH, glycine cleavage system H protein 1; ssgcid, | 96.85 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 96.78 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 96.78 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 96.76 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 96.75 | |
| 3cdx_A | 354 | Succinylglutamatedesuccinylase/aspartoacylase; str | 96.62 | |
| 4dk0_A | 369 | Putative MACA; alpha-hairpin, lipoyl, beta-barrel, | 96.58 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 96.55 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 96.29 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 96.25 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 96.15 | |
| 3na6_A | 331 | Succinylglutamate desuccinylase/aspartoacylase; st | 96.02 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 96.0 | |
| 3hgb_A | 155 | Glycine cleavage system H protein; ssgcid, niaid, | 95.99 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 95.97 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 95.8 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 95.58 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 95.46 | |
| 3fmc_A | 368 | Putative succinylglutamate desuccinylase / aspart; | 94.85 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 94.33 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 94.16 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 92.91 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 92.76 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 92.44 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 91.9 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 91.83 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 91.65 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 91.38 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 91.22 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 91.16 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 91.15 | |
| 2qj8_A | 332 | MLR6093 protein; structural genomics, joint center | 91.15 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 91.14 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 91.14 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 90.92 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 90.75 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 90.69 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 90.41 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 90.36 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 90.36 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 90.33 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 90.3 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 90.23 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 89.94 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 89.93 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 89.92 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 89.71 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 89.6 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 89.5 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 89.28 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 89.16 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 88.94 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 88.94 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 88.86 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 88.71 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 88.66 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 88.61 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 88.43 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 88.4 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 88.37 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 88.02 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 87.98 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 87.84 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 87.79 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 87.76 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 87.75 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 87.56 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 87.48 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 87.32 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 87.28 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 87.21 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 87.17 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 87.08 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 87.08 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 86.88 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 86.84 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 86.75 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 86.51 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 86.48 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 86.45 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 86.35 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 86.28 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 86.27 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 86.26 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 86.26 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 86.11 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 86.04 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 85.91 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 85.68 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 85.47 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 85.42 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 85.37 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 85.35 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 85.2 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 85.1 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 85.03 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 84.95 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 84.93 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 84.91 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 84.89 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 84.82 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 84.78 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 84.64 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 84.62 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 84.59 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 84.52 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 84.48 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 84.48 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 84.47 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 84.45 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 84.34 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 84.13 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 83.79 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 83.66 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 83.56 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 83.51 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 83.45 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 83.41 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 83.4 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 83.31 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 83.04 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 82.83 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 82.82 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 82.78 | |
| 2xha_A | 193 | NUSG, transcription antitermination protein NUSG; | 82.74 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 82.65 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 82.6 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 82.53 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 82.52 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 82.5 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 82.21 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 82.15 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 82.14 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 81.77 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 81.74 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 81.6 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 81.46 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 81.41 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 81.4 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 81.26 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 81.09 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 81.05 |
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-168 Score=1600.99 Aligned_cols=749 Identities=48% Similarity=0.807 Sum_probs=660.0
Q ss_pred cccCCCcccccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCc
Q 000092 1495 GLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTP 1574 (2267)
Q Consensus 1495 g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~ 1574 (2267)
|||||+|+++|||+||+||+||++||++|||||||||+||++|+.++|++..+ ....|+++++++||+||+ +| +
T Consensus 1 g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~l~~~~~~~~w~~~~~-~~~~~~~~~~~~el~l~~-~~----~ 74 (758)
T 3k8x_A 1 GSMHLRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSA-DVKLTDDFFISNELIEDE-NG----E 74 (758)
T ss_dssp ----CCCCCCSSCCHHHHSHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHCT-TCCCCGGGEEEEEEEECT-TS----C
T ss_pred CCcCCcccCCCCCCcchhhHHHHHHHHcCCeeecchHHHHHHHHHHHHHhccc-cccCCCccceEEEEEEcC-CC----C
Confidence 79999999999999999999999999999999999999999999999987652 345678899999999998 77 8
Q ss_pred ccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCC
Q 000092 1575 LVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARI 1654 (2267)
Q Consensus 1575 l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi 1654 (2267)
|.+++|+||.|++|||+|.++++||||++|++|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||
T Consensus 75 L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~gGS~G~~~~eKi~Ra~e~A~~~~lPvI~l~dSGGARm 154 (758)
T 3k8x_A 75 LTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARI 154 (758)
T ss_dssp EEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCC
T ss_pred eehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccccccCcHHHHHHHHHHHHHHHHcCCCEEEEecCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhccccccCCCCCCCCccccccChhhHHhhc-----cceeeeccccccCceeeEEEeecccccCccccccccc
Q 000092 1655 GVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG-----SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGS 1729 (2267)
Q Consensus 1655 ~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~-----~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~s 1729 (2267)
|++++++++|+|+|+|+.+|.+||+|||+++++|++++ ++++.+.++ ++||.||||++|+|+++|+|++|+++|
T Consensus 155 qe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~-~~ge~r~~I~~I~G~~~~~gv~~l~~s 233 (758)
T 3k8x_A 155 GMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTV-INGEERFVIKTIIGSEDGLGVECLRGS 233 (758)
T ss_dssp CCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEE-ETTEEEEEEEEECCSSSCSSHHHHHHH
T ss_pred cccchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeec-cCCceeeeEeeeeccccchhhhhcccc
Confidence 99999999999999999999999999999999999994 568888777 899999999999999999999999999
Q ss_pred ccccccccccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCc
Q 000092 1730 GAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGV 1809 (2267)
Q Consensus 1730 G~iag~~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv 1809 (2267)
|+|||+||+||++||||++|||||+|||||+++|||++||+++++||||||++|++++|+++|+|+++|||+++|.+||+
T Consensus 234 G~iag~~s~a~~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifltGP~vIk~~tGeeV~~s~eeLGGA~vh~~sGv 313 (758)
T 3k8x_A 234 GLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGV 313 (758)
T ss_dssp HHHHHHHHHHHTTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESSCHHHHHHHHTSCCCSCTHHHHSHHHHTTTTS
T ss_pred chhhhhhhhhhcCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEeCHHHHHHHhCCccccCchhcchhhHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccCCC--CCCChHHHhcccccCCCCcccccccCCCce
Q 000092 1810 VHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFV 1887 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~--~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~ 1887 (2267)
+|++++||.++++.+|+||||+|.++.+++|..++.||++|.++++|. ++||+|++|+++.|+++ |++||||+++|+
T Consensus 314 ad~va~dd~eal~~ir~lLsyLP~~~~~~~p~~~~~dp~dr~~~~vP~~~~pYD~R~vIa~~~d~~~-~~~givD~~sF~ 392 (758)
T 3k8x_A 314 SHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFF 392 (758)
T ss_dssp SSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSCSCCCCCCCSSSCCCHHHHHHCEEETTE-EECCSSCTTCCE
T ss_pred eeEEecCHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCchhhhhccCCCCCCCCCHHHHHhccccccc-ccceeecCCceE
Confidence 999999999999999999999999999999999999999999999998 99999999999988887 999999999999
Q ss_pred eccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcc-cCCcE
Q 000092 1888 ETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNR-EELPL 1966 (2267)
Q Consensus 1888 E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~-~~lPL 1966 (2267)
|++++||+++|||+|||+|+||||||++++.+++.+||||+||++.|+..+++||+|+|++++|+||||++|++ |++||
T Consensus 393 E~~~~~a~~iVtG~ARl~G~pVGVIAn~~~~~~~~~padP~~p~~~e~~~~~~gG~l~pe~a~KaArfI~lcd~~f~iPL 472 (758)
T 3k8x_A 393 ETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPM 472 (758)
T ss_dssp EESTTSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTSTTCCCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCE
T ss_pred EEcCCccccEEEEEEEECCEEEEEEEEccccccccCcccccCcchhhhHHhhcCCCCCHHHHHHHHHHHHHhhhccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCc
Q 000092 1967 FILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1967 v~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
|+|+||+||++|.++|+.|++++||++++++++++||+|++|+|+|+++||||+++++++|+|+|++||||+|++|||+|
T Consensus 473 v~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~~am~~~~~ad~~~v~Awp~A~isVM~p 552 (758)
T 3k8x_A 473 MILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEP 552 (758)
T ss_dssp EECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHHHTTCGGGSTTTEEEEEETTCEEESSCH
T ss_pred EEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHHHHhCcccCCCHHHHhcCCCCEEEccCH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred cchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHH
Q 000092 2047 EGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAA 2126 (2267)
Q Consensus 2047 egav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~ 2126 (2267)
||+|+|+||+++++++|+|+||+|++|++++++. +.+.+++++++++|++||++|+|+|+|||++||||||||+||++
T Consensus 553 Egaa~Il~r~~~~~~~m~r~d~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~re~~l~p~y~qva~~fadlHd~~~rm~~ 630 (758)
T 3k8x_A 553 QGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNK--SLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVA 630 (758)
T ss_dssp HHHHHHHSCHHHHHHHHHHHCSCCCCC------------------------------HHHHHHHHHHHHHTTSBHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHhcCHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHh
Confidence 9999999999999999999999999999999887 56678889999999999999999999999999999999999999
Q ss_pred cCCcccccCccchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhc-
Q 000092 2127 KGVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD- 2205 (2267)
Q Consensus 2127 ~G~Id~ii~~~~~R~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~- 2205 (2267)
||+|++||+|+++|+||||||||||.|+.++++|.++++ .+++.+++++|++||.+. ..|+||++|++|++
T Consensus 631 ~g~i~~~~~w~~~r~~f~~rlrr~l~e~~~~~~~~~~~~-~~~~~~~~~~l~~w~~~~-------~~w~~d~~~~~w~~~ 702 (758)
T 3k8x_A 631 KGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVG-EASRLEKIARIRSWYPAS-------VDHEDDRQVATWIEE 702 (758)
T ss_dssp HTCSSEEECGGGHHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHHTTSCTT-------SCTTCHHHHHHHHHH
T ss_pred hCccccccchHHhHHHHHHHHHHHHhHHHHHHHHHhhCc-ccCHHHHHHHHHHHhhcc-------CCccccHHHHHHHHh
Confidence 999999999999999999999999999999999999998 579999999999999643 23999999999999
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 000092 2206 DSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEIS 2263 (2267)
Q Consensus 2206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 2263 (2267)
+.+.++++|++||.+++.++|.++++++ ++.+++ |+.+++++||+++|+++++.|+
T Consensus 703 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 758 (758)
T 3k8x_A 703 NYKTLDDKLKGLKLESFAQDLAKKIRSD-HDNAID-GLSEVIKMLSTDDKEKLLKTLK 758 (758)
T ss_dssp HHHHHHHHHHHHHTTCCC----------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHH-HHHHHHHhCCHHHHHHHHHhhC
Confidence 8899999999999999999999998888 888898 9999999999999999999874
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-154 Score=1487.63 Aligned_cols=756 Identities=47% Similarity=0.818 Sum_probs=622.9
Q ss_pred cccccCCCcccccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCc
Q 000092 1493 VRGLLHGVEVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWG 1572 (2267)
Q Consensus 1493 ~~g~~~~~~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~ 1572 (2267)
..|+|||+|+++|||+++.||+||++|+..||+||||||+||++++.++|.+.. ..|...+++.|++||+ +|
T Consensus 18 ~~g~~~~~~~~~p~~~~~~l~~kr~~a~~~g~~y~yd~~~~~~~a~~~~w~~~~----~~~~~~l~~~elllD~-~g--- 89 (793)
T 2x24_A 18 GSGPQHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPEMFRQALFKMWPSPD----KYPKDILTYTELVLDP-QG--- 89 (793)
T ss_dssp -------------------CTTHHHHHHHTTSCCGGGHHHHHHHHHHHHSCSSS----CCCTTSEEEEEEEECT-TS---
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHhhhhcc----cCCCCchhHHHHhcCC-CC---
Confidence 389999999999999999999999999999999999999999999999998621 3456788999999998 67
Q ss_pred CcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 000092 1573 TPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGA 1652 (2267)
Q Consensus 1573 ~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGA 1652 (2267)
.|.|+.+.+|.|++|||+|+++++||+||+||+|+|++||+||++||||+.+++||.|++++|+++|+|+|||++||||
T Consensus 90 -sf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~t~~gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGA 168 (793)
T 2x24_A 90 -QLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGA 168 (793)
T ss_dssp -CEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECSSGGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCB
T ss_pred -CEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhc--cceeeeccccccCceeeEEEeecccccCcccccccccc
Q 000092 1653 RIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIG--SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSG 1730 (2267)
Q Consensus 1653 Ri~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~--~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG 1730 (2267)
||+++|++++||||+|.|+.+|..||+|+|++++++++++ +++++++++ ++||++|+|++|||+++|+|++|+++||
T Consensus 169 Rig~~ee~~sl~qma~~d~~~p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~-~~ge~~~~i~~i~g~~~~i~v~~l~~SG 247 (793)
T 2x24_A 169 RIGLAEEIKHMFQVAWVDPEDPHKGIKYLYLTPQDYTRISSLNSVHCKHVE-EDGESRYVITDIIGKEEGLGVENLRGSG 247 (793)
T ss_dssp CCCCCHHHHTTCEEEESSSSCSTTCEEEEEECHHHHHHTTTSCSEEEEEEE-ETTEEEEEEEEECCSSSSSSTHHHHHHH
T ss_pred CccchhhhhhhhcccccCccCcccchheeccchhHHHhhhccccccccccc-cccccceeeeccccccchHHHHHHHhcc
Confidence 9999999999999999999999999999999999999996 567777777 8999999999999999999999999999
Q ss_pred cccccccccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCce
Q 000092 1731 AIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVV 1810 (2267)
Q Consensus 1731 ~iag~~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~ 1810 (2267)
+|||++|+||.+||||++|||||+|||||+++|||++||+++++|+||||++||+++|+++|+|+++|||+++|++||++
T Consensus 248 ~iag~~s~a~~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltGp~vi~~~~Ge~vy~s~e~LGGa~v~~~~Gv~ 327 (793)
T 2x24_A 248 MIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTGATALNKVLGRDVYTSNNQLGGVQIMHHNGVS 327 (793)
T ss_dssp HHHHHHHHHHHHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSCHHHHHHHHSSCCCSCHHHHHSHHHHTTTTSC
T ss_pred chhhccccccCCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecCHHHHHHhcCCcccCChhhhccHHHHHhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCCCccCCC-CCCChHHHhcccccCC--CCcccccccCCCce
Q 000092 1811 HLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRPVEYLPE-NSCDPRAAICGFLDNN--GKWIGGIFDKDSFV 1887 (2267)
Q Consensus 1811 d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~~~~~P~-~~yD~R~~i~~~~~~~--~~~~~gl~D~gSF~ 1887 (2267)
|++++||.++++.+++||||+|+++.+++|..++.||++|.++++|. ++||+|++|++..+++ +.|+++|||+++|+
T Consensus 328 d~vv~dd~ea~~~ir~~LsylP~~~~~~~p~~~~~d~~~rl~~ivP~~~pyD~r~vI~g~~~~~~~~~~~~~l~D~g~F~ 407 (793)
T 2x24_A 328 HVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFK 407 (793)
T ss_dssp SEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCSSCSSCCCCCCCCSSCCCHHHHHHCEECSSSSSCEECCSSCTTCCE
T ss_pred EEEeCCHHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHhhCCCCCCCCHHHHHhcccccccccchhhccccCcceE
Confidence 99999999999999999999999988888888899999999999998 9999999999776654 68999999999999
Q ss_pred eccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEE
Q 000092 1888 ETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLF 1967 (2267)
Q Consensus 1888 E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv 1967 (2267)
|++++||+++|||+|||+|+||||||+++++++.++||||+++++.|+..+++||+|+|++++|+||||++|++|++|||
T Consensus 408 E~~~~~g~~iVtG~ARl~G~pVGVIAn~~~~v~~~~padP~~~~~~e~~~~~~gG~l~~~~a~KaarfI~~cd~f~iPlv 487 (793)
T 2x24_A 408 EIMVPWAQTVVTGRARLGGIPVGVIAAETRTVELVVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLM 487 (793)
T ss_dssp EESCSSCTTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTSTTCCCEEEEECTTEECHHHHHHHHHHHHHHHTTTCCEE
T ss_pred EecCcccCcEEEEEEEECCEEEEEEEEccccccccccCCccccchhhhhhhhcCCcccHHHHHHHHHHHHHhccCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 1968 ILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 1968 ~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|+||+||++|.++|+.|++++||++++++++++||+|++|+|.|+++||||+++++++++|+||+||||+|++|||+||
T Consensus 488 ~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~VM~pE 567 (793)
T 2x24_A 488 IFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASVLEPE 567 (793)
T ss_dssp EECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEESSCHH
T ss_pred EEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccchhHHhhhcccCccHHHHhhhccCEEEecCHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred chhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHc
Q 000092 2048 GMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAK 2127 (2267)
Q Consensus 2048 gav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~ 2127 (2267)
|+|+|+||++++.++|+|+|+++++|++++... +.+++++++++++|++|+++++|+|+|+|.+|+|+||+|.||+++
T Consensus 568 gaa~Il~r~~~l~~~m~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~re~~~~p~y~~~a~~y~~~~~~p~r~a~~ 645 (793)
T 2x24_A 568 GTVEIKYQKKDLVKTIRRLDPISKKLVEQLGVS--ELSDTDRKELEGQLKAREDLLLPMYHQVALHFADLHDTAGRMLEK 645 (793)
T ss_dssp HHHHHHSCHHHHHHHHHHHCSSCC-----------------------CCHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHhhhhHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcCCHHHHHHc
Confidence 999999999988899999999999999887654 234456777888888899999999999999999999999999999
Q ss_pred CCcccccCccchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhc-C
Q 000092 2128 GVIKEVVDWDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-D 2206 (2267)
Q Consensus 2128 G~Id~ii~~~~~R~~~~~~L~r~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~-~ 2206 (2267)
|+||+||+|++||++|+|+|+|+|.|+.+++++.++++ .+++.+++++|++||.++. ++.....|+||+.|++|++ +
T Consensus 646 G~Id~VIdp~~TR~~l~~~L~~~l~e~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~d~~~~~w~~~~ 723 (793)
T 2x24_A 646 GVIYDILEWKTARSFLYWRLRRLLLESQVKQEVLRACP-ELSHMHVQSMLRRWFVETE-GAVKAYLWDNNQTVVQWLEAH 723 (793)
T ss_dssp TSSSEEECHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHH-CTTSGGGGGCHHHHHHHHHHC
T ss_pred CcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhcc-cccccccccccHHHHHHHHhc
Confidence 99999999999999999999999999999999999877 5899999999999997754 3444568999999999999 4
Q ss_pred c-------hHHHHHHHHHhHHHHHHHHHHhcccCCcccchHHHHHHHhhcCCHHHHHHHHHHHHh
Q 000092 2207 S-------RNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLLSKVDPSCREQLIGEISK 2264 (2267)
Q Consensus 2207 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 2264 (2267)
. +.++++|++||++++.++|.++++++ ++.+++ |+..++++||+++|+++++.|++
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
T 2x24_A 724 GQASDVLHSTIRENITCLRRDSALKTIQGLVQEN-PELAMD-SLVYVSQHISPAERAQVIHLLST 786 (793)
T ss_dssp C----------------------------------------------------------------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cHhHHH-HHHHHHhhCCHHHHHHHHHHHhc
Confidence 3 34899999999999999999999998 777777 99999999999999999999964
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-98 Score=992.54 Aligned_cols=632 Identities=29% Similarity=0.469 Sum_probs=498.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|++|+++|++||++|++++ ++++|.+++++++++||+++++++.+..++|+|.+.|+++
T Consensus 1 m~~kiLIanrGeia~riiraar~lGi~~v-----------av~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~ 69 (681)
T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTV-----------AIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAA 69 (681)
T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBC-----------CEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHH
Confidence 78999999999999999999999999997 5566888999999999999999888888899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+|||||++|++.+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 70 a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~-------------- 135 (681)
T 3n6r_A 70 IRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYM-------------- 135 (681)
T ss_dssp HHHTCCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC----------------
T ss_pred HHHhCcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rh 282 (2267)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..++. +.+++||+|+++++|
T Consensus 136 -------~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~re 208 (681)
T 3n6r_A 136 -------GLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208 (681)
T ss_dssp --------------------------------------------------------------------------CCSCEE
T ss_pred -------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcE
Confidence 126788899999999999999999999999999999999999999998876643 458999999999999
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++|++++|++|++++++.|||++||+|||+++++|++.+++++.++|.+.+.++++++||+|++++||++++ +|+||||
T Consensus 209 i~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~~~~l 287 (681)
T 3n6r_A 209 IEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFL 287 (681)
T ss_dssp EEEEEECCSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSCCCCC
T ss_pred EEEEEEEeCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCCEEEE
Confidence 999999999999999999999999999999999999989999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|||||+|++||+||+++|+|++++++++++|.|++. .+....+.||+|
T Consensus 288 EiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~~--------------------------------~~~~~~~~g~ai 335 (681)
T 3n6r_A 288 EMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLSI--------------------------------TQGDVKLTGWAI 335 (681)
T ss_dssp EEECSCCTTHHHHHHHHTCCHHHHHHHHHTSCCCSS--------------------------------CTTTCCCCSEEE
T ss_pred ecccccCCCcHHhHHHhCCCHHHHHHHHHCCCCCCC--------------------------------CccccceeEEEE
Confidence 999999999999999999999999999999999863 233456789999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccC-C-------------------CcEEEEEeeeeCCcccccCCcccEEEEEEeCC
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKS-K-------------------PNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s-~-------------------~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2267)
++|+|+|||.++|.|++|+|..+.+|. + ++|++++++.+|+.|+++||||+||||+||+|
T Consensus 336 ~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~~~~~g~~v~~~yd~~iak~i~~g~~ 415 (681)
T 3n6r_A 336 ENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPT 415 (681)
T ss_dssp EEEEESEEGGGTTEECCEECSCEECCCC--------------------CCEEEEESCCTTCEECTTSCCEEEEEEEEESS
T ss_pred EEEEecCCcccccCCCCcEEEEEECCCCCcccccccccccccccccCCCcEEEEccccCCCccCCCCCCceeEEEEEcCC
Confidence 999999999999999999999999887 3 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhhhhhhccCCCCchh----HHHhhHHHHHHH
Q 000092 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYL----SVVGGALYKASA 578 (2267)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~~~~~~~~----~~~~~a~~~~~~ 578 (2267)
|++|+++|.+||+++.|+| ++||++||++||++|+|++|+++|+|||+++++.+....++... +++|+++..+.
T Consensus 416 r~~a~~~~~~al~~~~i~g-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 493 (681)
T 3n6r_A 416 RAAAIEAMRIALDSFEVEG-IGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFEGVNLPETDLRRVAAAAAAMHRVA- 493 (681)
T ss_dssp HHHHHHHHHHHHHHCEECS-SCCSHHHHHHHHHCHHHHHCCCCSSHHHHHCTTSCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCEEEC-ccCCHHHHHHHhCCHhhccCCcccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999 99999999999999999999999999999998877665555322 22222222221
Q ss_pred hhhhhhhccccccccCCCCCCcccccceeeeEeecCeEEEEEEEeecCceEEEEE-CCeEEEEEEEEecCCc--eEEEeC
Q 000092 579 SSAAMVSDYIGYLEKGQIPPKHISLVNSQVSLNIEGSKYRIDMVRRGPGSYTLRM-NESEIEAEIHTLRDGG--LLMQLD 655 (2267)
Q Consensus 579 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vel~~~g~~Y~v~v~~~g~~~y~v~i-nG~~~~V~v~~l~dg~--~~v~~~ 655 (2267)
......+ .|+.+... ........+.++|.+|.+++++ +++.|.+.+ ||..+.+.. .+.++. +.+.+|
T Consensus 494 --~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 563 (681)
T 3n6r_A 494 --EIRRTRV-----SGRMDNHE-RRVGTEWVVTLQGADFPVTIAA-DHDGSTVSFDDGSSMRVTS-DWTPGDQLANLMVD 563 (681)
T ss_dssp --HHHHTTC-----TTCCTTCC-CCCCSEEEEECSSCEEEEEEEE-CSSCEEEEETTSCEEEEEE-CCCTTCSEEEEEET
T ss_pred --hhccccc-----ccCCCccc-cCCCcCEEEEECCEEEEEEEEE-cCCeEEEEEeCCcEEEEEE-EecCCCeEEEEEEC
Confidence 1111112 22222111 1111223344489999999987 667799999 898887764 234454 667899
Q ss_pred CceEEEEeeecccceEEEEcCceeecc-----------------cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 656 GNSHVVYAEEEAAGTRLLIDGRTCLLQ-----------------NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 656 G~s~~v~~~e~~~~~~v~v~g~t~~~~-----------------~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
|.++.+++......+++..+|.++.+. ...+++.|+|||||+|++|+|++||+|++||+|++|
T Consensus 564 G~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~i 643 (681)
T 3n6r_A 564 GAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTI 643 (681)
T ss_dssp TEEEEEEEEEETTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CEEEEEEEEEeCCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEE
Confidence 999999998888889999998887653 134578899999999999999999999999999999
Q ss_pred EccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 719 EVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 719 EaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|+|||+++|+||.+|+|+++ +++|++|+.|++|++|+
T Consensus 644 EamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 644 EAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp ECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 99999999999999999999 99999999999999985
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-96 Score=948.09 Aligned_cols=553 Identities=54% Similarity=0.943 Sum_probs=469.6
Q ss_pred cccccCCC-CCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEE
Q 000092 7 RSAMAGLG-RGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVA 85 (2267)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~ 85 (2267)
|++|+|+. ..+++...+.+...+..++++++||++.||++||+||||+|||++|+++||+||+|||++|++|++|++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVa 93 (587)
T 3jrx_A 14 RPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVV 93 (587)
T ss_dssp -------------------CCTTCCCCSSHHHHHHHTTCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEE
T ss_pred CCCCCcchhhcCchhhhhhhhccceeecCHHHHHHhcCCCcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEE
Confidence 56899997 22233333566678889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHH
Q 000092 86 MATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPAT 165 (2267)
Q Consensus 86 ~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~e 165 (2267)
|++++|.+++++++++||+++++|++++.++|+|++.|+++|++.++|+|||||||++||+.+++.|++.|++|+||+++
T Consensus 94 v~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ 173 (587)
T 3jrx_A 94 MVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSE 173 (587)
T ss_dssp EECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHH
T ss_pred EecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHH
Confidence 99988888999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 166 SMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 166 am~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
+++.++||..+|++++++|||+|||..++++++. .+..+.+|+++|.++++.+.+++.++++++||||||||+.
T Consensus 174 ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~ 253 (587)
T 3jrx_A 174 AMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASE 253 (587)
T ss_dssp HHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETT
T ss_pred HHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCC
Confidence 9999999999999999999999999864332211 1245678999999999999999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCC
Q 000092 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2267)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~ 319 (2267)
|+||+||++|++.+||.++++.+..+..++++|||+|+++++|++|++++|++|+++++++|||++||+|||+++++|++
T Consensus 254 GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~ 333 (587)
T 3jrx_A 254 GGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPAT 333 (587)
T ss_dssp CCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCC
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCC
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
.+++++.++|.+.|.++++++||+|+++|||++++ +|+|||||||||+|++|++||+++|+|++++|+++++|.||+.+
T Consensus 334 ~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~ 412 (587)
T 3jrx_A 334 IAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 412 (587)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccc
Confidence 88999999999999999999999999999999984 68899999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee
Q 000092 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV 479 (2267)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v 479 (2267)
+|||.+||..|.+ ++.|+|.. ....+.++||||+||||||||.++|.|++|+|+.+++|++++||+++++
T Consensus 413 ~di~~~~~~~~~~---------~~~~~~~~-~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 482 (587)
T 3jrx_A 413 KDIRLLYGESPWG---------VTPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 482 (587)
T ss_dssp HHHHHHTTCCTTC---------CCCCCSSS-CSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECC
T ss_pred hhccccccccccc---------cccccccc-ccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccc
Confidence 9999999999986 77888752 1123678999999999999999999999999999999999999999988
Q ss_pred eeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhhhhhhcc
Q 000092 480 KSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRA 559 (2267)
Q Consensus 480 ~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~~~~~ 559 (2267)
..++.|++|||||+||||+||+||++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||+++++++..
T Consensus 483 ~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~g~~~t~~~~~~~~~~~~~ 562 (587)
T 3jrx_A 483 AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLIAEKVQA 562 (587)
T ss_dssp C----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTTSSTTHHHHHHHTSHHHHTTCSCCGGGGC--------
T ss_pred cccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCCCCcHHHHHHHhCChhhccCCcchhHHhHhhhhhccc
Confidence 88888999999999999999999999999999999999999977999999999999999999999999999999999988
Q ss_pred CCCCchhHHHh
Q 000092 560 ERPPWYLSVVG 570 (2267)
Q Consensus 560 ~~~~~~~~~~~ 570 (2267)
++|+++++++-
T Consensus 563 ~~~~~~~~~~~ 573 (587)
T 3jrx_A 563 EKPDIMLGVLE 573 (587)
T ss_dssp -----------
T ss_pred CCCcchhhhhh
Confidence 89998887653
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-90 Score=886.56 Aligned_cols=514 Identities=56% Similarity=0.978 Sum_probs=435.7
Q ss_pred CcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEc
Q 000092 29 PAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEV 108 (2267)
Q Consensus 29 ~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~v 108 (2267)
+..++++++||++.||++||+||||+|||++|+++||+||+|||++|+++++|++|+|++++|.+++++++++||+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i 100 (540)
T 3glk_A 21 DFTVASPAEFVTRFGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100 (540)
T ss_dssp CCCCSSHHHHHHHTTCSCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEEC
T ss_pred CccccCHHHHHHhcCCcccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCC
Q 000092 109 PGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTL 188 (2267)
Q Consensus 109 p~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtp 188 (2267)
|++++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+|
T Consensus 101 ~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp 180 (540)
T 3glk_A 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTL 180 (540)
T ss_dssp CCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBC
T ss_pred CCCCcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCC
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCC------CCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH
Q 000092 189 PWSGSHVKIPP------ESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 262 (2267)
Q Consensus 189 p~~~~~~~~~~------~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~ 262 (2267)
||..++++++. ....+.+|++.|.++++.+.+++.++++++||||||||+.|+||+||++|++.+||.++++.+
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~ 260 (540)
T 3glk_A 181 PWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQV 260 (540)
T ss_dssp CBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHH
T ss_pred CcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 99763332111 123456888899999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCc
Q 000092 263 QGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNY 342 (2267)
Q Consensus 263 ~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy 342 (2267)
..+..+++++||+|++|++|++|++++|++|+++++++|||++|++|||+++++|++.++++..++|.+.|.++++++||
T Consensus 261 ~~~~~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~ 340 (540)
T 3glk_A 261 QSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGY 340 (540)
T ss_dssp HHHSTTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99888889999999999899999999999999999999999999999999999999988999999999999999999999
Q ss_pred eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 343 VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 343 ~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
+|+++|||++++ +|++||||||||+|++|++||+++|+|++++|+++++|.|++.+++||.+||..|.+ +
T Consensus 341 ~G~~~VEf~~d~-dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~---------~ 410 (540)
T 3glk_A 341 VSAGTVEYLYSQ-DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWG---------V 410 (540)
T ss_dssp CEEEEEEEEEET-TSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSC---------C
T ss_pred ccceEEEEEEcC-CCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCccccccccccccccccc---------c
Confidence 999999999984 688999999999999999999999999999999999999999999999999998875 6
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCC
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGES 502 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~ 502 (2267)
..+.|.. ....+.++||+|+||||||||.++|.|++|+|+.+.+|++++||+++++..++.|++|||||+||||+||+|
T Consensus 411 ~~~~~~~-~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~ 489 (540)
T 3glk_A 411 TPISFET-PSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGEN 489 (540)
T ss_dssp SCCCSCC-C----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC------------CEEEEEEEESS
T ss_pred ccccccc-ccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCC
Confidence 6777642 112367899999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 503 RALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 503 reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
|++|+++|.+||+++.|+|.|+||++||++||++|+|++|+++|+|||++|
T Consensus 490 r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 540 (540)
T 3glk_A 490 REEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYLI 540 (540)
T ss_dssp HHHHHHHHHHHHHHHTCC----HHHHHHHHHHHSHHHHHTCC---------
T ss_pred HHHHHHHHHHHHhccEEecccCCcHHHHHHHhCChhhcCCCccchhhhhcC
Confidence 999999999999999999966999999999999999999999999999875
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-78 Score=766.93 Aligned_cols=475 Identities=23% Similarity=0.349 Sum_probs=408.1
Q ss_pred ccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCC
Q 000092 1504 AQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPG 1583 (2267)
Q Consensus 1504 ~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g 1583 (2267)
.-|..++.|+.||.+|+..|+ +.++.++|++..-. .-+-.++.||+ | .|.|++...+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~g~----------~~~~~~~~~~g~l~-------areRi~~LlD~--g----sF~E~~~~~~ 70 (527)
T 1vrg_A 14 SLRDKIEELKKIEKEIEQGGG----------PEKVEKQHRAGKLT-------AWERLELLLDP--G----TFVEIDKFVE 70 (527)
T ss_dssp CHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHTTCCC-------HHHHHHHHSCT--T----CCEEECTTCC
T ss_pred hHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHhcCCCC-------HHHHHHHHccC--C----ceEEcccccc
Confidence 346788999999999999998 67889999754210 01222344554 3 2444432222
Q ss_pred C------------CceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCC
Q 000092 1584 L------------NNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSG 1651 (2267)
Q Consensus 1584 ~------------n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssG 1651 (2267)
. ...|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.+.|+|+|+|+||||
T Consensus 71 ~~~~~f~~~~~~~~~dgvVtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgG 144 (527)
T 1vrg_A 71 HRNTYFGLDKVKLPRDGVITGVGEI------NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGG 144 (527)
T ss_dssp CCCCGGGGGGCCCGGGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS
T ss_pred cCCcccCcccccCCCCcEEEEEEEE------CCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 1 237899999976 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccc
Q 000092 1652 ARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGA 1731 (2267)
Q Consensus 1652 ARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ 1731 (2267)
|||| |++.++++++ .+| ..|.+.||.
T Consensus 145 AR~q--eg~~~l~g~~------------~~~----------------------------------------~~~~~~s~~ 170 (527)
T 1vrg_A 145 ARIQ--EGVDALAGYG------------EIF----------------------------------------LRNTLASGV 170 (527)
T ss_dssp BCGG--GTHHHHHHHH------------HHH----------------------------------------HHHHHHTTT
T ss_pred CCcc--chhHHHHHHH------------HHH----------------------------------------HHHHHhCCC
Confidence 9999 8888876554 111 112223333
Q ss_pred ccccccccccCceEEEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCc
Q 000092 1732 IAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGV 1809 (2267)
Q Consensus 1732 iag~~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv 1809 (2267)
+|+|++|||||+|||||.++|||++||+++ +.|+|+||++|++++|+++ ++++|||+++|. +||+
T Consensus 171 -----------iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~aGP~vi~~~~ge~v--~~e~lggae~~~~~~G~ 237 (527)
T 1vrg_A 171 -----------VPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGN 237 (527)
T ss_dssp -----------SCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCC
T ss_pred -----------CCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEecCHHHHHHHhCCCC--CccccccHHHHhhcccc
Confidence 699999999999999999999999999999 8999999999999999999 778999999998 7999
Q ss_pred eEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccCCC---CCCChHHHhcccccCCCCccccccc
Q 000092 1810 VHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGGIFD 1882 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D 1882 (2267)
+|++++||.++++.+++||+|+|+++.+.+|..++.|| ++. ..++|. +|||+|++|+. |||
T Consensus 238 vd~vv~d~~~~~~~~~~~Ls~lp~~~~~~~~~~~~~dp-~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D 305 (527)
T 1vrg_A 238 AHFLADNDEKAMSLVRTLLSYLPSNNAEEPPVEDPDTS-LETPEDILDILPDNPNKGYDVRDVIKR-----------VVD 305 (527)
T ss_dssp CSEEESSHHHHHHHHHHHHTTSCSSTTSCCCBCSCCCC-CCCCGGGGGSSCSSTTSCCCTHHHHHH-----------HSG
T ss_pred eEEEecCHHHHHHHHHHHHHhcCccCcccCCCCCCCCC-CcChHHHhhhccCCCCCCcCHHHHHHH-----------hcC
Confidence 99999999999999999999999988888887777776 443 567887 89999999997 899
Q ss_pred CCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhccc
Q 000092 1883 KDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNRE 1962 (2267)
Q Consensus 1883 ~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~ 1962 (2267)
++||+|+...|++++|||+|||+|+||||||++++. .||+|++++++|++|||++|+++
T Consensus 306 ~g~f~E~~~~~~~~vV~G~ari~G~~V~via~~~~~---------------------~~G~~~~~~~~Kaar~i~~a~~~ 364 (527)
T 1vrg_A 306 HGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQPSV---------------------LAGVLDIDSSDKAARFIRFLDAF 364 (527)
T ss_dssp GGCCEEESTTSSTTEEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCcCcEEEEEEEECCEEEEEEEEcCcc---------------------cCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999997653 38999999999999999999999
Q ss_pred CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEE
Q 000092 1963 ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKG 2041 (2267)
Q Consensus 1963 ~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~ 2041 (2267)
++|||+|+||+||++|.++|..|+++++|++++++++++||+|++|+ |+++||+|++|++ .+++|+ +||||+|++
T Consensus 365 ~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~--g~~~gGg~~am~~~~~~~d~--~~a~p~a~~ 440 (527)
T 1vrg_A 365 NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVIL--RKAYGGAYIAMGSKHLGADM--VLAWPSAEI 440 (527)
T ss_dssp TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEE
T ss_pred CCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcCCCCCCCE--EEEcCCCeE
Confidence 99999999999999999999999999999999999999999999999 8889999999997 599998 999999999
Q ss_pred EeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcH
Q 000092 2042 NVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTS 2121 (2267)
Q Consensus 2042 gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~ 2121 (2267)
+||+|||+|+|+||++ ++.+ .+++ +++ ++++.+|++.|++|
T Consensus 441 ~Vm~pegaa~Il~r~~--~~~~--------------------~d~~---~~~--------------~~~~~~y~~~~~~p 481 (527)
T 1vrg_A 441 AVMGPEGAANIIFKRE--IEAS--------------------SNPE---ETR--------------RKLIEEYKQQFANP 481 (527)
T ss_dssp ESSCHHHHHHHHTHHH--HHHS--------------------SCHH---HHH--------------HHHHHHHHHHTSSH
T ss_pred EecCHHHHHHHHhhhh--hhcc--------------------cCHH---HHH--------------HHHHHHHHHhhCCH
Confidence 9999999999999976 1110 0111 111 24567899999999
Q ss_pred HHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2122 LRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2122 ~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
.++++.|+||+||+|++||++|+++|+..
T Consensus 482 ~~~~~~g~iD~II~p~~tR~~l~~~L~~l 510 (527)
T 1vrg_A 482 YIAASRGYVDMVIDPRETRKYIMRALEVC 510 (527)
T ss_dssp HHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999754
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-76 Score=812.06 Aligned_cols=447 Identities=30% Similarity=0.503 Sum_probs=403.7
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~I 123 (2267)
|+||+||||+|+|++|++++|+|+++|++++ +++++.+..+.+.++||+++++|+. ....+|+|++.|
T Consensus 1 M~~~kkVLIagrGeia~riiraa~elGi~vV-----------av~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~I 69 (1150)
T 3hbl_A 1 MKQIKKLLVANRGEIAIRIFRAAAELDISTV-----------AIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERI 69 (1150)
T ss_dssp --CCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EEEcCCcccchhhhhcceeeecCCCCCccccccCHHHH
Confidence 4689999999999999999999999998885 4445677889999999999999875 445799999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|+++++|+|+||||+++|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 70 i~~a~~~~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~----------- 138 (1150)
T 3hbl_A 70 IDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTD----------- 138 (1150)
T ss_dssp HHHHHHTTCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS-----------
T ss_pred HHHHHHhCCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g 279 (2267)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+.+++. +.+++||+|++|
T Consensus 139 ----------~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G 208 (1150)
T 3hbl_A 139 ----------GPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN 208 (1150)
T ss_dssp ----------SCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS
T ss_pred ----------cCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC
Confidence 115677777888899999999999999999999999999999999998876654 468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++|++++|++|+++++++|+|++|++|||.++.+|++.++++..++|.+.+.++++++||+|++|+||+++ ++++
T Consensus 209 ~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd--~d~~ 286 (1150)
T 3hbl_A 209 PKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEF 286 (1150)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEE
T ss_pred CcEEEEEEEEeCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCeE
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999 3499
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||||||+|++|+++|+++|+|++++++++++|.+++.. .+.+ +.+..+.++|
T Consensus 287 y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G~~L~~~------------------------~~~~--~~q~~i~~~G 340 (1150)
T 3hbl_A 287 FFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGE------------------------EINM--PQQKDITTLG 340 (1150)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTST------------------------TTCC--CCGGGCCCCS
T ss_pred EEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCCCCCCcc------------------------cccc--ccccccccce
Confidence 9999999999999999999999999999999999998631 0011 0234566789
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
|+|+||||+|||..+|.|++|+|+.+.+|.+++|+++.+ +.+|..|+++|||++||||+||+||++|+++|.+||+++.
T Consensus 341 ~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~ 420 (1150)
T 3hbl_A 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR 420 (1150)
T ss_dssp EEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCE
T ss_pred EEEEEEEeccCCccccCCCCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceE
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+| ++||++||+++|+||+|++|+++|+|||++
T Consensus 421 i~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 453 (1150)
T 3hbl_A 421 IRG-VKTNIPFLINVMKNKKFTSGDYTTKFIEET 453 (1150)
T ss_dssp EES-SCCSHHHHHHHHHCHHHHHSCCCTTHHHHC
T ss_pred EeC-ccCCHHHHHHHhCCHHHcCCCcccchhhCC
Confidence 999 999999999999999999999999999974
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-77 Score=759.81 Aligned_cols=417 Identities=22% Similarity=0.341 Sum_probs=375.0
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+|+|
T Consensus 82 ~dgvvtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGGARmq--eg~~sl~~ 153 (523)
T 1on3_A 82 ADGVVTGRGTI------LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQ--EGIDSLSG 153 (523)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--hHHHHHHH
Confidence 47799999976 99999999999999999999999999999999999999999999999999999 88999877
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
|+ .+| ..+.+.||. ||+
T Consensus 154 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 170 (523)
T 1on3_A 154 YG------------KMF----------------------------------------FANVKLSGV-----------VPQ 170 (523)
T ss_dssp HH------------HHH----------------------------------------HHHHHHTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhcCC-----------CCE
Confidence 65 111 011122332 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
|+++||||+||+||+++|||++||++++.|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++.+
T Consensus 171 Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP~vI~~~~ge~~--~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~ 248 (523)
T 1on3_A 171 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIA 248 (523)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC--CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCHHHHHHHhCCcC--ChHhcccHHHHhhccCceEEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 778999999998 7999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcCCCCCCCCC---CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEE
Q 000092 1825 LKWLSYVPPHIGGALPIISPLDPPDR---PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVV 1898 (2267)
Q Consensus 1825 ~~~LsylP~~~~~~~p~~~~~d~~~r---~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vV 1898 (2267)
++||+|+|+++.+.+|..++.|++++ ...++|. ++||+|++|++ |||++||+|++++||+++|
T Consensus 249 r~lL~~lp~~~~~~~p~~~~~d~p~~~~~l~~~vp~~~~~~~d~r~~I~~-----------l~D~g~f~E~~~~~~~~iv 317 (523)
T 1on3_A 249 KKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAK-----------IVDWGDYLEVKAGYATNLV 317 (523)
T ss_dssp HHHHHTSCSSTTSCCCCCSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHH-----------HSGGGCEEEESTTSSTTEE
T ss_pred HHHHHhcCccCcccCCCCCCCCCccchhhhhhhcCCCCCCCCCHHHHHHH-----------hCCCCeEEEecCCCcCcEE
Confidence 99999999998888887777777766 4567887 89999999997 8999999999999999999
Q ss_pred EEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCc
Q 000092 1899 TGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGG 1978 (2267)
Q Consensus 1899 tG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G 1978 (2267)
||+|||+|+||||||++++. .||+|++++++|++|||++|+++++|||+|+||+||++|
T Consensus 318 ~G~ari~G~~Vgvian~~~~---------------------~~G~~~~~~a~Kaar~i~~~~~~~iPlv~lvDtpGf~~G 376 (523)
T 1on3_A 318 TAFARVNGRSVGIVANQPSV---------------------MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPG 376 (523)
T ss_dssp EEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCC
T ss_pred EEEEEECCEEEEEEEecCCc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcCcc
Confidence 99999999999999997543 379999999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhcchh
Q 000092 1979 QRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 1979 ~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
.++|..|+++++|++++++++++||+|++|+ |+++||+|+++++ .+++|+ +||||+|+++||+|||+|+|+||++
T Consensus 377 ~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~a~p~a~~~Vm~pegaa~Il~r~~ 452 (523)
T 1on3_A 377 VQQEYGGIIRHGAKMLYAYSEATVPKITVVL--RKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKE 452 (523)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHH
T ss_pred hHHHHhhHHHHHHHHHHHHhcCCCCEEEEEe--CCcccHHHHHhcccCCCCCE--EEEcCCCeEEecCHHHHHHHHhhhh
Confidence 9999999999999999999999999999999 7889999999987 499998 9999999999999999999999975
Q ss_pred hhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCcc
Q 000092 2058 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWD 2137 (2267)
Q Consensus 2058 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~ 2137 (2267)
. + +. .+++ +++ +|++.+|++.|++|.++++.|+||+||+|+
T Consensus 453 ~--~-----------------~~---~d~~---~~~--------------~~~~~~y~~~~~~p~~~a~~g~iD~II~p~ 493 (523)
T 1on3_A 453 I--K-----------------AA---DDPD---AMR--------------AEKIEEYQNAFNTPYVAAARGQVDDVIDPA 493 (523)
T ss_dssp H--H-----------------HS---SCHH---HHH--------------HHHHHHHHHHHSSHHHHHHTTSSSEECCGG
T ss_pred h--h-----------------cc---cCHH---HHH--------------HHHHHHHHHhhCCHHHHHhcCCCCEeeCHH
Confidence 1 1 10 0111 111 345678999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q 000092 2138 KSRSFFCRRLRRR 2150 (2267)
Q Consensus 2138 ~~R~~~~~~L~r~ 2150 (2267)
+||++|+++|+..
T Consensus 494 ~tR~~l~~~L~~l 506 (523)
T 1on3_A 494 DTRRKIASALEMY 506 (523)
T ss_dssp GHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999754
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-77 Score=758.08 Aligned_cols=420 Identities=23% Similarity=0.355 Sum_probs=372.0
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.++++
T Consensus 95 ~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGGARmq--eg~~sl~~ 166 (548)
T 2bzr_A 95 GDGVVTGYGTI------DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ--EGVVSLGL 166 (548)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGG--GTTHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCCCCch--hHHHHHHH
Confidence 47799999876 99999999999999999999999999999999999999999999999999999 88888876
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
|+ .+| ..+.+.||. ||+
T Consensus 167 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 183 (548)
T 2bzr_A 167 YS------------RIF----------------------------------------RNNILASGV-----------IPQ 183 (548)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhcCC-----------CcE
Confidence 55 111 112223443 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|||||+||+||+++|||++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 184 Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP~vI~~~~ge~v--~~e~lggae~h~~~sG~~d~vv~d~~~~~~~ 261 (548)
T 2bzr_A 184 ISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDY 261 (548)
T ss_dssp EEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSSCCSEEESSHHHHHHH
T ss_pred EEEecCCCchHHHHHHHhCCeEEeccCceeEEeccHHHHHHHhCCcC--ChHhcccHHHHhhccCceeEEeCCHHHHHHH
Confidence 999999999999999999999999998 8999999999999999999 778999999998 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCC-------CCCCC----CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceec
Q 000092 1824 ILKWLSYVPPHIGGALPIISPL-------DPPDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVET 1889 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~-------d~~~r----~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~ 1889 (2267)
+++||+|+|+++.+.+|..++. ||+++ ...++|. +|||+|++|+. |||++ |+|+
T Consensus 262 ~r~lls~lp~~~~~~~p~~~~~~~~~~~~d~p~~~~~~l~~~vp~~~~~pyd~r~~I~~-----------l~D~~-f~E~ 329 (548)
T 2bzr_A 262 VRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITR-----------LLDDE-FLEI 329 (548)
T ss_dssp HHHHHTTSCSSTTSCCCCCCCCCCCSSGGGSCCHHHHHGGGTSCSSTTCCCCTHHHHHH-----------HSSSC-CEEE
T ss_pred HHHHHHhcCccCcccCCCCCccccccccCCCCCCChHHHhhhCCCCCCCCCCHHHHHHH-----------HcCCC-eEEe
Confidence 9999999999888877776664 66654 3567887 89999999997 89998 9999
Q ss_pred cccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEE
Q 000092 1890 LEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFIL 1969 (2267)
Q Consensus 1890 ~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l 1969 (2267)
.+.|++++|||+|||+|+||||||++++. .||+|++++++|++|||++|+++++|||+|
T Consensus 330 ~~~~~~~vV~G~ari~G~~Vgvian~~~~---------------------~~G~l~~~~a~Kaar~i~~a~~~~iPlv~l 388 (548)
T 2bzr_A 330 QAGYAQNIVVGFGRIDGRPVGIVANQPTH---------------------FAGCLDINASEKAARFVRTCDCFNIPIVML 388 (548)
T ss_dssp STTSSTTEEEEEEEETTEEEEEEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccCccEEEEEEEECCEEEEEEEECCcc---------------------cCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999997653 389999999999999999999999999999
Q ss_pred ecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccc
Q 000092 1970 ANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 1970 ~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
+||+||++|.++|+.|++++|+++++++++++||+|++|+ |+++||+|.++++ .+++|+ +||||+|+++||+|||
T Consensus 389 vDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~a~i~Vmgpeg 464 (548)
T 2bzr_A 389 VDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVIT--RKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASG 464 (548)
T ss_dssp EEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred eeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEe--CCcchHHHHHhccccCCCCE--EEEcCCCEEEecCHHH
Confidence 9999999999999999999999999999999999999999 7889999999987 599998 9999999999999999
Q ss_pred hhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcC
Q 000092 2049 MIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKG 2128 (2267)
Q Consensus 2049 av~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G 2128 (2267)
+|+|+||++. +.++ + +.++.++++ +++..+|.+.|++|.++++.|
T Consensus 465 aa~Il~r~~~--~~~~--------------~-----~g~~~~~~~--------------~~~~~~y~~~~~~p~~~a~~g 509 (548)
T 2bzr_A 465 AVGFVYRQQL--AEAA--------------A-----NGEDIDKLR--------------LRLQQEYEDTLVNPYVAAERG 509 (548)
T ss_dssp HHHHHTCCC-------------------------------CHHHH--------------HHHHHHHHHHHSBSHHHHHTT
T ss_pred HHHHHhhhHH--hhhh--------------c-----ccccHHHHH--------------HHHHHHHHHhhCCHHHHHhcC
Confidence 9999999862 1110 0 001112222 345678999999999999999
Q ss_pred CcccccCccchHHHHHHHHHHH
Q 000092 2129 VIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2129 ~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
+||+||+|++||++|+++|+..
T Consensus 510 ~iD~II~p~~tR~~l~~~L~~l 531 (548)
T 2bzr_A 510 YVGAVIPPSHTRGYIGTALRLL 531 (548)
T ss_dssp SSSEECCGGGHHHHHHHHHHHT
T ss_pred CCceeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-77 Score=752.22 Aligned_cols=418 Identities=23% Similarity=0.345 Sum_probs=370.0
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|.+||||||| |++.++++
T Consensus 84 ~dgvVtG~G~I------~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGaRmq--Eg~~~l~~ 155 (530)
T 3iav_A 84 GDGVVTGYGTV------DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ--EGVASLGA 155 (530)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchh--hhhhhHHH
Confidence 46799999987 99999999999999999999999999999999999999999999999999998 88988866
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++ .+| ..+.+.||. ||+
T Consensus 156 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 172 (530)
T 3iav_A 156 YG------------EIF----------------------------------------RRNTHASGV-----------IPQ 172 (530)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHHcCC-----------CCE
Confidence 54 111 111223332 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|+|+|+||+||+++|||++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 173 Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~aGP~vi~~~~ge~v--~~e~LGGa~~h~~~sGv~d~va~de~~a~~~ 250 (530)
T 3iav_A 173 ISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEY 250 (530)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEecCcchHHHHHHHhCCEEEEecCCcEEEecCHHHHHHHhCCcC--ChhhcchHHHHHhccCceeEEecChHHHHHH
Confidence 999999999999999999999999987 8999999999999999999 999999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCC--CCC----CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceecccccc
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDP--PDR----PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWA 1894 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~--~~r----~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a 1894 (2267)
+++||||||.++.+.+|..++.|| +++ ...++|. ++||+|++|++ |||+++|+|++++||
T Consensus 251 ~r~~ls~lp~~~~~~~p~~~~~dp~~~~~~~~~l~~ivp~~~~~~yd~r~~I~~-----------l~D~~~f~E~~~~~~ 319 (530)
T 3iav_A 251 VKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEH-----------VLDDAEFFETQPLFA 319 (530)
T ss_dssp HHHHHHHSCSSTTSCCCCCCCCCCCSCCHHHHHGGGSSCSSTTCCCCHHHHHHT-----------TSGGGCCEEESTTSC
T ss_pred HHHHHHhccccCCCCCCCCCCCCcccccCChHhHHHhccCCCCCCCCHHHHHHH-----------HcCCcceeeeccccC
Confidence 999999999998888887777776 443 3467887 99999999997 899999999999999
Q ss_pred ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCC
Q 000092 1895 RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRG 1974 (2267)
Q Consensus 1895 ~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~G 1974 (2267)
+++|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+|
T Consensus 320 ~~iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpG 378 (530)
T 3iav_A 320 PNILTGFGRVEGRPVGIVANQPM---------------------QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPG 378 (530)
T ss_dssp TTEEEEEEEETTEEEEEEEECTT---------------------SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ceEEEEEEEECCEEEEEEEecCc---------------------ccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeeCCC
Confidence 99999999999999999999643 348999999999999999999999999999999999
Q ss_pred CCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhh
Q 000092 1975 FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIK 2053 (2267)
Q Consensus 1975 f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~ 2053 (2267)
|++|.++|+.|++++||++++++++++||+|++|+ |+++||+|+++++. +++|+ +||||+|+++||+|||+++|+
T Consensus 379 f~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~--g~~~GGa~~am~~~~~~~d~--~~awp~a~~~Vm~~egaa~il 454 (530)
T 3iav_A 379 FLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVIT--RKAFGGAYVVMGSKHLGADL--NLAWPTAQIAVMGAQGAVNIL 454 (530)
T ss_dssp BCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHH
T ss_pred CCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEe--CCcchHHHHHhcCCCCCCCE--EEEcCCceEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999 77799999999875 89998 999999999999999999999
Q ss_pred cchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccc
Q 000092 2054 FRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2133 (2267)
Q Consensus 2054 ~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~i 2133 (2267)
||++.. +. . ++.++++ .++..+|.+.+.+|+++++.|+||+|
T Consensus 455 ~r~~~~-------------------~~--~---~d~~~~~--------------~~~~~~y~~~~~~p~~aa~~~~vD~V 496 (530)
T 3iav_A 455 HRRTIA-------------------DA--G---DDAEATR--------------ARLIQEYEDALLNPYTAAERGYVDAV 496 (530)
T ss_dssp TSTTTS-------------------TT--C---TTCHHHH--------------HHHHHHHHHHHSSSHHHHHTTSSSEE
T ss_pred hhhhhh-------------------hc--c---cCHHHHH--------------HHHHHHHHHhcCCHHHHHhcCCCCcc
Confidence 998721 00 0 0111222 23445666666678899999999999
Q ss_pred cCccchHHHHHHHHHHH
Q 000092 2134 VDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2134 i~~~~~R~~~~~~L~r~ 2150 (2267)
|+|++||++|+..|+..
T Consensus 497 IdP~~TR~~l~~~l~~~ 513 (530)
T 3iav_A 497 IMPSDTRRHIVRGLRQL 513 (530)
T ss_dssp CCGGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999998653
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-76 Score=744.84 Aligned_cols=412 Identities=24% Similarity=0.369 Sum_probs=366.6
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||++.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.++++
T Consensus 92 ~dgVVtG~G~I------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGARmq--eg~~sl~~ 163 (531)
T 3n6r_B 92 GDGVVTGWGTI------NGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQ--EGVDSLAG 163 (531)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGG--GTHHHHHH
T ss_pred CCCEEEEEEEE------CCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCccccC--cccchhhh
Confidence 46799999987 99999999999999999999999999999999999999999999999999999 88888866
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++ .+| ..+.+.||. ||+
T Consensus 164 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 180 (531)
T 3n6r_B 164 YG------------EVF----------------------------------------QRNIMASGV-----------VPQ 180 (531)
T ss_dssp HH------------HHH----------------------------------------HHHHHTTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHHhCC-----------CCE
Confidence 54 111 122333443 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|+|||+||+||.++|+|++||+++ +.|+|+||++|++++|+++ +.++|||+++|. +||++|++++||.++++.
T Consensus 181 Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aGP~vI~~~~ge~v--~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~ 258 (531)
T 3n6r_B 181 ISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQV--SAEELGGATTHTRKSSVADAAFENDVEALAE 258 (531)
T ss_dssp EEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTTSCCSEEESSHHHHHHH
T ss_pred EEEEeCCcchHHHHHhhhCCEEEEecCCceEeecCHHHHHHHhCCcc--ChhhcchHHHHhhccCcceEEeCCHHHHHHH
Confidence 999999999999999999999999997 8999999999999999999 899999999995 899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccce
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1896 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~ 1896 (2267)
+++||+|||.++.+.+|..++.|++++.. .++|. +|||+|++|++ |||+++|+|++++||++
T Consensus 259 ~r~lls~Lp~~~~~~~p~~~~~d~~~~~~~~l~~ivp~~~~~pyd~r~vI~~-----------l~D~~~f~E~~~~~~~~ 327 (531)
T 3n6r_B 259 VRRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHK-----------LADEGDFYEIQEEFAKN 327 (531)
T ss_dssp HHHHHTTSCSSSSSCCCBCCCCSCTTCCCGGGGGTSCSSTTCCCCHHHHHHH-----------HSTTSCCEEESTTSSTT
T ss_pred HHHHHHhccccCCCCCCCCCCCCCcccChHHHHhhCCCCcCCCcCHHHHHHh-----------ccCCcceEEecccCCCc
Confidence 99999999999888888777777766543 46787 89999999997 89999999999999999
Q ss_pred EEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCC
Q 000092 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFS 1976 (2267)
Q Consensus 1897 vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~ 1976 (2267)
+|||+|||+|+|||||||++. +.||+|++++++|++|||++|+++++|||+|+||+||+
T Consensus 328 iV~G~arl~G~~Vgvian~~~---------------------~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~ 386 (531)
T 3n6r_B 328 IITGFIRLEGRTVGVVANQPL---------------------VLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFL 386 (531)
T ss_dssp EEEEEEEETTEEEEEEEECTT---------------------TGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECSBC
T ss_pred EEEEEEEECCEEEEEEEeccc---------------------ccCCCCCHHHHHHHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 999999999999999999643 24799999999999999999999999999999999999
Q ss_pred CchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhcc
Q 000092 1977 GGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFR 2055 (2267)
Q Consensus 1977 ~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~r 2055 (2267)
+|.++|+.|++++||++++++++++||+|++|+ |+++||+|.+|++ .+++|+ +||||+|+++||+|||+++|+||
T Consensus 387 ~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~--g~~~Ggg~~am~~~~~~~d~--~~awp~A~i~Vm~pegaa~Il~r 462 (531)
T 3n6r_B 387 PGTSQEYGGVIKHGAKLLYAYGEATVPMVTVIT--RKAYGGAYVVMSSKHLRADF--NYAWPTAEVAVMGAKGATEIIHR 462 (531)
T ss_dssp CSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHCC
T ss_pred CCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEc--CCccchhhhhccCccCCCCe--EEEcCCceEecCCHHHHHHHHhc
Confidence 999999999999999999999999999999999 7789999999986 489998 99999999999999999999999
Q ss_pred hhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccC
Q 000092 2056 TKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135 (2267)
Q Consensus 2056 ~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~ 2135 (2267)
++. ++ +++ . .+...+|.+.+.+|+.+++.|+||+||+
T Consensus 463 ~~~-------------------~~------~~~---~---------------~~~~~~y~~~~~~p~~aa~~~~vD~vId 499 (531)
T 3n6r_B 463 GDL-------------------GD------PEK---I---------------AQHTADYEERFANPFVASERGFVDEVIQ 499 (531)
T ss_dssp TTT-------------------TS------TTH---H---------------HHHHHHHHHHHSSSHHHHHHTSSSEECC
T ss_pred ccc-------------------cc------hhH---H---------------HHHHHHHHHHhcCHHHHHhcCccCcccC
Confidence 761 00 011 1 1123345555567788999999999999
Q ss_pred ccchHHHHHHHHHH
Q 000092 2136 WDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2136 ~~~~R~~~~~~L~r 2149 (2267)
|++||++|+..|+-
T Consensus 500 P~~TR~~l~~~l~~ 513 (531)
T 3n6r_B 500 PRSTRKRVARAFAS 513 (531)
T ss_dssp GGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-75 Score=753.57 Aligned_cols=533 Identities=56% Similarity=0.980 Sum_probs=476.1
Q ss_pred hhcccccCCCCCCCcccCCCCCCCCcchhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEE
Q 000092 5 QRRSAMAGLGRGNGHINGAVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLV 84 (2267)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v 84 (2267)
.|...+-|.+.+.+.- ... ..+++++|++++||++|++||||+|+|+.|+++++++|++||+|+..+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v 83 (554)
T 1w96_A 11 ERHTELPGHFIGLNTV----DKL---EESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFV 83 (554)
T ss_dssp HHHHHSCGGGCCSSBG----GGS---CCCHHHHHHHHTTCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEE
T ss_pred hhcccCCCCccccccc----ccc---ccccHHHHHhhcCCcccccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEE
Confidence 3555666665443311 001 127999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcC--CeEeCC
Q 000092 85 AMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKG--IIFLGP 162 (2267)
Q Consensus 85 ~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~G--I~fiGP 162 (2267)
+++++.|.++++++.++||+++.+|+..+.++|.|.+.|+++|+++++|+|+||+|+.+|++.++..|++.| +.++||
T Consensus 84 ~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp 163 (554)
T 1w96_A 84 AMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGP 163 (554)
T ss_dssp EEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSC
T ss_pred EEecccccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCC
Confidence 999988888999999999999999988778899999999999999999999999999999999999999999 999999
Q ss_pred CHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCC---ccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 163 PATSMAALGDKIGSSLIAQAANVPTLPWSGSH---VKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 163 s~eam~~lgDK~~~k~laq~aGVPtpp~~~~~---~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
++++++.++||..++++++++|||+|+|...+ ++.+....+..+|.+.|.+.++++.+++.++++++|||+||||+.
T Consensus 164 ~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~ 243 (554)
T 1w96_A 164 PGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASE 243 (554)
T ss_dssp CHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETT
T ss_pred CHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999999999999987520 000111122346777777777899999999999999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCC
Q 000092 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2267)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~ 319 (2267)
|+||+||++|++.+|+.++++.+..+..+.+++||+|+++++|++|++++|++|+++++++++|++|++|+|.++.+|++
T Consensus 244 g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~ 323 (554)
T 1w96_A 244 GGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVT 323 (554)
T ss_dssp CCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCC
T ss_pred CCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCc
Confidence 99999999999999999999999888777899999999988999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCc
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQI 399 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~i 399 (2267)
.++++..++|.+.+.++++++||+|++++||++++.+|++||||+|||+|++|+++++++|+|++++++++++|.+++.+
T Consensus 324 ~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~ 403 (554)
T 1w96_A 324 IAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRI 403 (554)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccc
Confidence 88999999999999999999999999999999974478899999999999999999999999999999999999999888
Q ss_pred hhhhhcccccCCCcccccccccccccCCCc------cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcE
Q 000092 400 PEIRRFYGMEHGGVYDAWRKTSVIATPFDF------DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNV 473 (2267)
Q Consensus 400 pdir~~yg~~~~~~~~~~~~~~~~~i~f~~------~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V 473 (2267)
|+++.+||.+|.+ ...++|.+ ..+..+.+.||++++|+++|+|.++|.|++|+|..+.++..++|
T Consensus 404 ~~~~~~~g~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v 474 (554)
T 1w96_A 404 SDIRTLYGMNPHS---------ASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNV 474 (554)
T ss_dssp HHHHHHTTCCTTC---------CCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSE
T ss_pred cchhhhccCCccc---------cccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCE
Confidence 8899999988865 56666630 01224567899999999999999999999999999988888899
Q ss_pred EEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 474 WAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 474 ~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
|+++++.+|+.|++++||++|+|+++|+|+++|+++|.++|++++|+|.++||++||++||++|+|++|+++|+|||++|
T Consensus 475 ~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~g~~~~~i~~~~~~~~~~~f~~~~~~t~~~~~~~ 554 (554)
T 1w96_A 475 WGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 554 (554)
T ss_dssp EEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTCCCTTHHHHHC
T ss_pred EEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEEeeccCCHHHHHHHhcCHhhhcCCccchHhhhhC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999864
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-76 Score=753.63 Aligned_cols=439 Identities=18% Similarity=0.241 Sum_probs=378.9
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|++++ +||+|+|++||+||++||+|+.+++|+.|++++|.++|+|+|+|.|||||||| |++.+++.
T Consensus 92 ~dgvVtG~G~I------~Gr~v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlq--e~~~~l~~ 163 (587)
T 1pix_A 92 SVAIVKGLGRV------NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFD--EQEKVYPN 163 (587)
T ss_dssp CCSEEEEEEEE------TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGG--GHHHHSSS
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc--ccchhccc
Confidence 47899999987 99999999999999999999999999999999999999999999999999999 66665531
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
..||+.+|... .+.||+ .||+
T Consensus 164 ---------~~~~g~i~~~~----------------------------------------~~ls~~----------giP~ 184 (587)
T 1pix_A 164 ---------RRGGGTPFFRN----------------------------------------AELNQL----------GIPV 184 (587)
T ss_dssp ---------TTSTTHHHHHH----------------------------------------HHHHHT----------TCCE
T ss_pred ---------cccHHHHHHHH----------------------------------------HHHhCC----------CCCE
Confidence 12444444221 111221 2699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHH-----------------hhccccccccccCCcccccc-c
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNK-----------------LLGREVYSSHMQLGGPKIMA-T 1806 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~-----------------~lG~evy~s~~~lGG~~i~~-~ 1806 (2267)
|++|+|+|+|||||+ +++|++||+++ +.|+|+||+++++ ++|+++ ++++|||+++|. +
T Consensus 185 Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~~~~d~~~A~el~~~tge~v--~~e~lgga~~h~~~ 261 (587)
T 1pix_A 185 IVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTG--KTEPPGAVDIHYTE 261 (587)
T ss_dssp EEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTTC--CCCCSSBHHHHTTT
T ss_pred EEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccccccchhHHHHHHHHhCCcc--ChhhcccHHHHHhh
Confidence 999999999999999 99999999886 8999999999999 999999 899999999998 6
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC----CccCCC---CCCChHHHhcccccCCCCcccc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP----VEYLPE---NSCDPRAAICGFLDNNGKWIGG 1879 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~----~~~~P~---~~yD~R~~i~~~~~~~~~~~~g 1879 (2267)
||++|++++||.++++.+++||+|+|+++.+.+|..++ |+++++ ..++|. +|||+|++|++
T Consensus 262 ~GvvD~vv~~e~~a~~~~r~~ls~lp~~~~~~~~~~~~-~~p~~~~~~l~~ivp~~~~~pyd~r~vI~~----------- 329 (587)
T 1pix_A 262 TGFMREVYASEEGVLEGIKKYVGMLPKYDPEFFRVDDP-KAPAFPADDLYSMVPLNDKRAYDIYNVIAR----------- 329 (587)
T ss_dssp SCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGBSSCC-CCCSSCGGGHHHHSCSSTTSCCCHHHHHHT-----------
T ss_pred cCceeEecCCHHHHHHHHHHHHHhCCccCCCCCCCCCC-CCCCCChHHHhhhCCCCCCCCccHHHHHHH-----------
Confidence 99999999999999999999999999988777776554 555543 456777 99999999997
Q ss_pred cccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHh
Q 000092 1880 IFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDF 1959 (2267)
Q Consensus 1880 l~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a 1959 (2267)
|||+++|+|++++|++++|||+|||+|+|||||||+++.. |+||. +.++...+.+|+|+|++++|++|||++|
T Consensus 330 l~D~~~f~E~~~~~~~~iV~G~arl~G~~VgvIan~~g~~----~~~P~---~~~~~~~~~~G~l~~~~a~Kaarfi~~c 402 (587)
T 1pix_A 330 LFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLL----MNYPE---YKAAGSVGIGGKLYRQGLVKMNEFVTLC 402 (587)
T ss_dssp TSGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEE----TTCCT---TSCTTCCEETTEECHHHHHHHHHHHHHH
T ss_pred hCCCceEEEeccccCCcEEEEEEEECCEEEEEEEeccCcc----ccccc---cccccccccCCCcCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999987633 56665 3334466778999999999999999999
Q ss_pred cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCC--ccceeecc
Q 000092 1960 NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINS--DHIEMYAD 2036 (2267)
Q Consensus 1960 ~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~--d~~~~~A~ 2036 (2267)
+++++|||+|+||+||++|.++|+.|++++||++++++++++||+|++|+ |+++||+|+++++ ++++ |+ +|||
T Consensus 403 ~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~--g~~~Ggg~~am~~~~~~~~~d~--~~a~ 478 (587)
T 1pix_A 403 ARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITL--RKGTAAAHYVLGGPQGNDTNAF--SIGT 478 (587)
T ss_dssp HHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEEC--SEEETTHHHHTTCTTCTTTEEE--EEEC
T ss_pred hcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCCccHHHHHhcCcccCcccce--eeec
Confidence 99999999999999999999999999999999999999999999999999 7889999999985 5999 98 9999
Q ss_pred cccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHh
Q 000092 2037 RTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAE 2116 (2267)
Q Consensus 2037 p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fad 2116 (2267)
|+|+++||+|||+++|+||++. +.++| .+ .+++++++++ ++++.+|.+
T Consensus 479 p~A~~~Vm~pegaa~Il~r~~~--~~~~~--------------~g--~~~~~~~~~~--------------~~~~~~y~~ 526 (587)
T 1pix_A 479 AATEIAVMNGETAATAMYSRRL--AKDRK--------------AG--KDLQPTIDKM--------------NNLIQAFYT 526 (587)
T ss_dssp TTCEEESSCHHHHHHHHHHHHH--HHHHH--------------TT--CCCHHHHHHH--------------HHHHHHHHH
T ss_pred cCCeEecCCHHHHHHHHHhhhh--hhhhh--------------cC--CChHHHHHHH--------------HHHHHHHHH
Confidence 9999999999999999999872 22221 11 2333333333 345678888
Q ss_pred hhCcHHHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2117 LHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2117 lhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
|++|.+++++|+||+||+|++||++|+++|+..
T Consensus 527 -~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~ 559 (587)
T 1pix_A 527 -KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAA 559 (587)
T ss_dssp -TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHH
T ss_pred -hCCHHHHHhcCCCccccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999754
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-76 Score=750.11 Aligned_cols=443 Identities=19% Similarity=0.237 Sum_probs=366.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhh-hc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKA-CF 1664 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~-l~ 1664 (2267)
..|||+|++++ +||+|+|++||+||++||+|+.+++|+.|++++|.++|+|+|+|.|||||||+++|++++ +
T Consensus 93 ~dgVVtG~G~I------~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l- 165 (588)
T 3gf3_A 93 TTNIVNGLGRV------DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNR- 165 (588)
T ss_dssp SCSEEEEEEEE------TTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSST-
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccch-
Confidence 35899999987 999999999999999999999999999999999999999999999999999988898875 5
Q ss_pred cccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCce
Q 000092 1665 EIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETF 1744 (2267)
Q Consensus 1665 ~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ip 1744 (2267)
.|++.+|... .. .|+. .||
T Consensus 166 -----------~~~g~if~~~---~~-------------------------------------ls~~----------~iP 184 (588)
T 3gf3_A 166 -----------RGGGTPFFRN---SE-------------------------------------LNQL----------GIP 184 (588)
T ss_dssp -----------TSTTHHHHHH---HH-------------------------------------HHHT----------TCC
T ss_pred -----------hhHHHHHHHH---HH-------------------------------------HhcC----------CCC
Confidence 3344444221 11 1111 279
Q ss_pred EEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHH-----------------HhhccccccccccCCcccccc-c
Q 000092 1745 TLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALN-----------------KLLGREVYSSHMQLGGPKIMA-T 1806 (2267)
Q Consensus 1745 tis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~-----------------~~lG~evy~s~~~lGG~~i~~-~ 1806 (2267)
+|++|+|+|+|||||.+.++|++|+.+++.|+|+||++|+ +.++.++|.|+++|||+++|. +
T Consensus 185 ~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~ 264 (588)
T 3gf3_A 185 VIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDE 264 (588)
T ss_dssp EEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTTBHHHHTTT
T ss_pred EEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccccccccchhhhhhhhccccccChhhccchhhhccc
Confidence 9999999999999999888888888899999999999996 445444444899999999998 7
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCC---CCCCCccCCC---CCCChHHHhcccccCCCCccccc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDP---PDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGI 1880 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~---~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl 1880 (2267)
||++|++++||+++++.+|+||||||+++.+.+|..++.+| .++...++|. +|||+|++|++ |
T Consensus 265 sGv~d~~a~de~~al~~~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~~L~~ivP~~~~~pyD~r~vI~~-----------i 333 (588)
T 3gf3_A 265 TGFFREVYQNDLGVIDGIKKYISYLPAYNLEFFRVDTPKAPQLPAEDLYSIIPMNQKRPYDIYEVIAR-----------L 333 (588)
T ss_dssp SCCSCEEESSHHHHHHHHHHHHHTSCCCCGGGGCSSCCCCCSSCGGGHHHHSCSSTTCCCCHHHHHHH-----------H
T ss_pred cccceEEeCCHHHHHHHHHHHHHhCCccCCCcCCCCCCCCCcCChHHHHhhCCCCCCCCCCHHHHHHH-----------H
Confidence 99999999999999999999999999988776665544333 2233456887 89999999997 8
Q ss_pred ccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhc
Q 000092 1881 FDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFN 1960 (2267)
Q Consensus 1881 ~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~ 1960 (2267)
||+++|+|++++||+++|||+|||+|+|||||||+++.. . .+|.+.++ ..+.||+|+|++++|++|||++|+
T Consensus 334 ~D~~~f~E~~~~~g~~iV~G~arl~G~pVgvvan~~~~~----~---~~p~~~~~-~~~~~G~l~~~~a~Kaarfi~lcd 405 (588)
T 3gf3_A 334 FDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIANVQGLL----M---NYPEYKQN-SVGIGGKLYRQGLIKMNEFVTLCA 405 (588)
T ss_dssp SGGGBCEESSTTSSTTEEEEEEEETTEEEEEEEECCSEE----E---TCCTTSSS-CEEETTEECHHHHHHHHHHHHHHH
T ss_pred cCCCcceeecccccccEEEEEEEECCEEEEEEEecCCcc----c---ccccchhh-hhccCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999986643 1 23444443 667899999999999999999999
Q ss_pred ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeeccccc
Q 000092 1961 REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTA 2039 (2267)
Q Consensus 1961 ~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A 2039 (2267)
+||+|||+|+||+||++|.++|+.|++++||++++++++++||+|++|+ |+.+||+|++|++. ++++++.+||||+|
T Consensus 406 ~f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~--g~~~Ggg~~am~~~~~~~~~~~~~awp~A 483 (588)
T 3gf3_A 406 RDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITI--RKASAAAHYVLGGPQGNNTNVFSIGTGAC 483 (588)
T ss_dssp HTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEES--SEEETTHHHHTTCTTCTTTEEEEEECTTC
T ss_pred hcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc--CCccHHHHHHhcccccCCccceEEECCCc
Confidence 9999999999999999999999999999999999999999999999999 67799999999864 88886669999999
Q ss_pred EEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhC
Q 000092 2040 KGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHD 2119 (2267)
Q Consensus 2040 ~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhd 2119 (2267)
++|||+|||+|+|+||++.. . .++.++..++ +++. +.++..+|.+..
T Consensus 484 ~~sVm~pEgaa~Il~~~~~~--~--------------~~~~~~~~~~--~~~~--------------~~~~~~~y~~~~- 530 (588)
T 3gf3_A 484 EYYVMPGETAANAMYSRKLV--K--------------AKKAGEDLQP--IIGK--------------MNDMIQMYTDKS- 530 (588)
T ss_dssp EEESSCHHHHHHHHHHHHHH--H--------------C-------CH--HHHH--------------HHHHHHHHHHTT-
T ss_pred eEEeCCHHHHHHHHhhhHHh--h--------------hhccccccch--HHHH--------------HHHHHHHHHHhC-
Confidence 99999999999999997621 0 0011001111 1111 133455666644
Q ss_pred cHHHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2120 TSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2120 t~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
+|.++++.|+||+||+|++||++|+..|..-
T Consensus 531 ~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~ 561 (588)
T 3gf3_A 531 RPKYCTEKGMVDEIVDMTEVRPYIQAFTEAA 561 (588)
T ss_dssp SHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999877664
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-75 Score=737.69 Aligned_cols=424 Identities=23% Similarity=0.306 Sum_probs=364.6
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||+|.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|.|||||||++++++++++
T Consensus 108 ~dgVVtG~G~I------~Gr~v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~- 180 (555)
T 3u9r_B 108 AAGIVAGIGRV------EGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDR- 180 (555)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSST-
T ss_pred CCcEEEEEEEE------CCEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcceeeccc-
Confidence 36899999987 99999999999999999999999999999999999999999999999999999889887753
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
.+|+.+|.. +.+ .||. .|||
T Consensus 181 ----------~~~~~i~~~---~~~-------------------------------------ls~~----------giP~ 200 (555)
T 3u9r_B 181 ----------EHFGRIFFN---QAN-------------------------------------MSAR----------GIPQ 200 (555)
T ss_dssp ----------TSTTHHHHH---HHH-------------------------------------HHHT----------TCCE
T ss_pred ----------ccHHHHHHH---HHH-------------------------------------HhcC----------CCCE
Confidence 234445432 111 1111 2699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++|+|+|+|||||+++++|++||+++ +.|+|+||++++.++|+++ +.++|||+++|. +||++|++++||.+++..
T Consensus 201 Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aGP~vik~~~ge~~--~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~ 278 (555)
T 3u9r_B 201 IAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATGEVV--SAEELGGADVHCKVSGVADHYAEDDDHALAI 278 (555)
T ss_dssp EEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTTCSCSEEESSHHHHHHH
T ss_pred EEEEecCCCccHHHHHHhCCceEEecCCceEEEccHHHHHHHhcCcc--ChhhccchhhhhhccCceeEEeCCHHHHHHH
Confidence 999999999999999999999999875 7899999999999999998 889999999997 799999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCcCCCCCC---CCCCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceE
Q 000092 1824 ILKWLSYVPPHIGGALPIISPLDP---PDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTV 1897 (2267)
Q Consensus 1824 i~~~LsylP~~~~~~~p~~~~~d~---~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~v 1897 (2267)
+++||+|||.++.+++|..++.+| +++...++|. +|||+|++|++ ++|+++|+|+++.||+++
T Consensus 279 ~r~~ls~Lp~~~~~~~~~~~~~~p~~~~~~l~~ivP~~~~~pyd~r~~i~~-----------i~D~~~f~E~~~~~g~~i 347 (555)
T 3u9r_B 279 ARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYDVREVIAR-----------LVDGSEFDEFKALFGTTL 347 (555)
T ss_dssp HHHHHHTSCCCCCCCCCCCCCCCCSSCGGGHHHHSCSSTTSCCCTHHHHTT-----------TSGGGBCEEESTTSSTTE
T ss_pred HHHHHHhCCccCCCCCCCCCCCCCCCChHHHHhhCCCCccCCccHHHHHhh-----------hcCCceeEEeeccCCCcE
Confidence 999999999988777666544333 3444567887 89999999997 799999999999999999
Q ss_pred EEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCC
Q 000092 1898 VTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSG 1977 (2267)
Q Consensus 1898 VtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~ 1977 (2267)
|||+|||+|+||||||| .|+|++++++|++|||++|++|++|||+|+||+||++
T Consensus 348 V~G~ari~G~~Vgvian--------------------------~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~ 401 (555)
T 3u9r_B 348 VCGFAHLHGYPIAILAN--------------------------NGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMV 401 (555)
T ss_dssp EEEEEEETTEEEEEEEE--------------------------CSSBCHHHHHHHHHHHHHHHHHTCCEEEEEEECCBCC
T ss_pred EEEEEEECCEEEEEEEe--------------------------CCccCHHHHHHHHHHHHHHhcCCCCEEEEecCcCCCC
Confidence 99999999999999999 3899999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchh
Q 000092 1978 GQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 1978 G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
|.++|+.|++++||+++.++++++||+|++|++ +.++||+|++.++.+++|+ +||||+|++|||+|||+++|+|..+
T Consensus 402 G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g-~~~Ggg~~am~~~~~~~d~--~~a~p~A~i~Vmgpegaa~il~~~~ 478 (555)
T 3u9r_B 402 GQKYEAGGIAKHGAKLVTAVACARVPKFTVLIG-GSFGAGNYGMCGRAYDPRF--LWMWPNARIGVMGGEQAAGVLAQVK 478 (555)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEE-EEETTHHHHTTCGGGCCSE--EEECTTCEEESSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeC-CccchhhHhhcCccCCCCe--EEEcCCcEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999993 3344455555556799999 9999999999999999999998532
Q ss_pred hhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH-HHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2058 ELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAR-EKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2058 ~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r-~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
. +++++.+++.++++.+++++++.++ +++. +|..+++.|+||+||+|
T Consensus 479 ~----------------~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~----------------~p~~aa~r~~vD~vIdP 526 (555)
T 3u9r_B 479 R----------------EQAERAGQQLGVEEEAKIKAPILEQYEHQG----------------HPYYSSARLWDDGVIDP 526 (555)
T ss_dssp H----------------HHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----------------SHHHHHHTTSSSCBCCG
T ss_pred H----------------HHHHhccCCCCcchHHHHHHHHHHHHHHhC----------------CHHHHhhccccCcccCh
Confidence 0 1233334455666666676666554 3333 46677899999999999
Q ss_pred cchHHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r~ 2150 (2267)
++||.+|+..|+..
T Consensus 527 ~~TR~~l~~~l~~~ 540 (555)
T 3u9r_B 527 AQTREVLALALSAA 540 (555)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888643
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-75 Score=737.18 Aligned_cols=417 Identities=27% Similarity=0.403 Sum_probs=373.8
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|||++.+++ +||+|+|++||+||++||+|+.+++|+.|++|+|.++|+|+|+|++||||||| |++.+++|
T Consensus 78 ~dgvvtG~G~i------~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGGaRmq--eg~~sl~~ 149 (522)
T 1x0u_A 78 GDGVVTGWGKV------DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQ--EGALSLEG 149 (522)
T ss_dssp TTTEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCChh--HHHHHHHH
Confidence 46799999876 99999999999999999999999999999999999999999999999999999 88999876
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
|+ .+| ..+.+.||. ||+
T Consensus 150 ~~------------~i~----------------------------------------~~~~~~s~~-----------iP~ 166 (522)
T 1x0u_A 150 YG------------AVF----------------------------------------KMNVMASGV-----------IPQ 166 (522)
T ss_dssp HH------------HHH----------------------------------------HHHHHHTTT-----------SCE
T ss_pred HH------------HHH----------------------------------------HHHHHhCCC-----------CcE
Confidence 65 111 111222333 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-C-cceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-Q-PIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGIS 1822 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a-~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~ 1822 (2267)
|+++||||+||+||+++|||++||+++ + .|+|+||++|++++|+++ ++++|||+++|. .||++|++++||.++++
T Consensus 167 Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP~vI~~~~ge~~--~~e~lggae~~~~~~G~~d~vv~~~~~~~~ 244 (522)
T 1x0u_A 167 ITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEV--SFQDLGGAVVHATKSGVVHFMVDSEQEAIN 244 (522)
T ss_dssp EEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCHHHHHHTTCCCC--CHHHHHBHHHHHHTTCCCSEEESCHHHHHH
T ss_pred EEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCHHHHHHHhCCcC--ChhhcchHHHHhhcCceeEEEeCCHHHHHH
Confidence 999999999999999999999999999 8 999999999999999999 778999999998 79999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcCCCCCCCCCCC----ccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccc
Q 000092 1823 AILKWLSYVPPHIGGALPIISPLDPPDRPV----EYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWAR 1895 (2267)
Q Consensus 1823 ~i~~~LsylP~~~~~~~p~~~~~d~~~r~~----~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~ 1895 (2267)
.+++||+|+|+++.+.+|..++.|++++.. .++|. .+||+|++|+. |||+|||+|+...|++
T Consensus 245 ~~~~ll~~lp~~~~~~~~~~~~~d~p~~~~~~l~~v~p~~~~~~~~~r~~I~~-----------l~D~gsF~E~~~~~~~ 313 (522)
T 1x0u_A 245 LTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIVPNDAAKPYNMREIIYK-----------IVDNGEFLEVHKHWAQ 313 (522)
T ss_dssp HHHHHHHHSCSSTTSCCCCCCCCCCSCCCSSSHHHHSCSSSSCCCCHHHHHHH-----------HSGGGCCEEETTTSCT
T ss_pred HHHHHHHhccccCccCCCCCCCCCCcccCchhHhhhccCCCCCCCCHHHHHHH-----------hCCCCceEEecCCCcc
Confidence 999999999998888788777777776643 45676 89999999997 8999999999999999
Q ss_pred eEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCC
Q 000092 1896 TVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGF 1975 (2267)
Q Consensus 1896 ~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf 1975 (2267)
++|||+|||+|+||||+|+|+++. ||+|++++++|++|||++|+++++|||+|+||+||
T Consensus 314 ~vVtG~ari~G~~V~via~d~~~~---------------------gG~l~~~~~~K~ar~i~~a~~~~~Plv~l~ds~G~ 372 (522)
T 1x0u_A 314 NIIVGFARIAGNVVGIVANNPEEF---------------------GGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGY 372 (522)
T ss_dssp TEEEEEEEETTEEEEEEEECTTTG---------------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCB
T ss_pred cEEEEEEEECCEEEEEEEECCCcc---------------------CCCcCHHHHHHHHHHHHHHhhCCCCEEEEecCCCC
Confidence 999999999999999999987654 89999999999999999999999999999999999
Q ss_pred CCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhc
Q 000092 1976 SGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKF 2054 (2267)
Q Consensus 1976 ~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~ 2054 (2267)
++|.++|+.|+++++|+++++++++++|+|++|+ |+++||+|.++++ ++++|+ +||||+|+++||+|||+++|+|
T Consensus 373 ~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~--g~~~GGg~~~~a~~a~~~D~--v~a~p~A~i~v~gpegaa~Il~ 448 (522)
T 1x0u_A 373 VPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIV--RKSYGGAHIAMSIKSLGADL--VYAWPTAEIAVTGPEGAVRILY 448 (522)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTCCGGGTCSE--EEECTTCEEESSCHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcccHHHHHhcccccCCCE--EEEeCCCEEEecCHHHHHHHHh
Confidence 9999999999999999999999999999999999 8889999999987 589999 9999999999999999999999
Q ss_pred chhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCccccc
Q 000092 2055 RTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVV 2134 (2267)
Q Consensus 2055 r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii 2134 (2267)
|++. +... | + +++ .+++..+|.+.|++|.+++++|+||+||
T Consensus 449 r~~i--~~~~--d------------------~---~~~--------------~~~l~~~y~~~~~~~~~~~~~G~iD~II 489 (522)
T 1x0u_A 449 RKEI--QQAS--N------------------P---DDV--------------LKQRIAEYRKLFANPYWAAEKGLVDDVI 489 (522)
T ss_dssp SSSS--SSSS--S------------------S---SSS--------------SHHHHHHHHHHHSSSHHHHHTTSSSEEC
T ss_pred hhhh--hccc--C------------------H---HHH--------------HHHHHHHHHHhcCCHHHHHhcCCCcEeE
Confidence 9851 0000 0 0 001 1345678999999999999999999999
Q ss_pred CccchHHHHHHHHHHH
Q 000092 2135 DWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2135 ~~~~~R~~~~~~L~r~ 2150 (2267)
+|+++|++|++.|+..
T Consensus 490 ~p~~tR~~L~~~L~~~ 505 (522)
T 1x0u_A 490 EPKDTRRVIVAGLEML 505 (522)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999754
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-71 Score=699.86 Aligned_cols=438 Identities=32% Similarity=0.549 Sum_probs=411.1
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.||+||||+|+|++|++++++++++|++++ +++++.++++++.++||+++++++.+..++|.|.+.|++
T Consensus 4 m~~~kiLI~g~g~~a~~i~~aa~~~G~~~v-----------~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~ 72 (446)
T 3ouz_A 4 MEIKSILIANRGEIALRALRTIKEMGKKAI-----------CVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIA 72 (446)
T ss_dssp TCCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHH
T ss_pred cccceEEEECCCHHHHHHHHHHHHcCCEEE-----------EEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHH
Confidence 368999999999999999999999999885 344466789999999999999988788889999999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+||||+.+|++.+++.|++.|+.|+||++++++.++||..++++++++|||+|||..
T Consensus 73 ~~~~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~------------- 139 (446)
T 3ouz_A 73 AAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSD------------- 139 (446)
T ss_dssp HHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS-------------
T ss_pred HHHHhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CCcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GSPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~r 281 (2267)
..+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+.. ..+++||+|++|++
T Consensus 140 --------~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~ 211 (446)
T 3ouz_A 140 --------GALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPR 211 (446)
T ss_dssp --------SSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCE
T ss_pred --------cCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 016899999999999999999999999999999999999999999998876532 56899999999989
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|++++|++|++++++.++|+++++|+|.++.+|++.++++..++|.+.+.++++++||+|++++||++++ +|++||
T Consensus 212 e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~~ 290 (446)
T 3ouz_A 212 HIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYF 290 (446)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEE
T ss_pred EEEEEEEEcCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCCEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 578999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
||||||++++|+++++++|+|++++++++++|.|++. +..+.+.||+
T Consensus 291 iEiNpR~~g~~~~~~~~~G~dl~~~~~~~~~G~~l~~---------------------------------~~~~~~~g~a 337 (446)
T 3ouz_A 291 IEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPS---------------------------------QESIKLNGHS 337 (446)
T ss_dssp EEEESSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCC---------------------------------GGGCCCCSEE
T ss_pred EEeECCCCCcceeeeeeeCCCHHHHHHHHHCCCCCCc---------------------------------CCCCCcceEE
Confidence 9999999999999999999999999999999998851 1223457999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+++||++|+| ..|.|++|+|..+.+|+.++|+++..+.+|..|+++|||++|+||++|+||++|+++|.+||+++.|+|
T Consensus 338 i~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr~~~~~~~G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g 416 (446)
T 3ouz_A 338 IECRITAEDS-KTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISG 416 (446)
T ss_dssp EEEEEESBCT-TTCCBCCEECSEEECCCSTTEEEEECCCTTCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEES
T ss_pred EEEEeeccCC-CccCCCCcEEeEEecCCCCCEEEEcccccCCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDS 551 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~ 551 (2267)
++||++||+++|++|+|++|+++|+|||+
T Consensus 417 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
T 3ouz_A 417 -IKTTKDFHLSMMENPDFINNNYDTNYLAR 445 (446)
T ss_dssp -SCCTHHHHHHHHTCHHHHTTCCCTTHHHH
T ss_pred -ccCCHHHHHHHhCChhhccCCcccccccc
Confidence 99999999999999999999999999996
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-68 Score=727.94 Aligned_cols=441 Identities=32% Similarity=0.541 Sum_probs=353.4
Q ss_pred CCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHH
Q 000092 44 GKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLI 123 (2267)
Q Consensus 44 g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~I 123 (2267)
+++||+||||+|+|++|++++++||++|++++ +++++.+.++++.++||+++++++....++|.|.+.|
T Consensus 27 ~~~m~kkILI~grGeia~~iiraar~lGi~vV-----------aV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~I 95 (1236)
T 3va7_A 27 KKKPFETVLIANRGEIAVRIMKTLKRMGIKSV-----------AVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKI 95 (1236)
T ss_dssp -CCSCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHH
T ss_pred ccCCCCEEEEEcCCHHHHHHHHHHHHCCCEEE-----------EEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHH
Confidence 46899999999999999999999999998875 4455777899999999999999887888899999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|+++++|+|+||||+++||..+++.|++.|+.|+||++++++.++||..+|++++++|||+|||+.
T Consensus 96 l~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~----------- 164 (1236)
T 3va7_A 96 INAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSG----------- 164 (1236)
T ss_dssp HHHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------------
T ss_pred HHHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeE-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g 279 (2267)
.+.+.+++.++++++||||||||+.|+||+||++|+|.+|+.++++.+..+. .+.+++||+|++|
T Consensus 165 -----------~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 165 -----------LIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -----------ecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 1678889999999999999999999999999999999999999999877543 3468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++|++++|++|++++++.|||++|++|+|+++++|++.+++++.++|.+.+.++++++||+|+++|||+++++++++
T Consensus 234 ~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~ 313 (1236)
T 3va7_A 234 ARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEF 313 (1236)
T ss_dssp CEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE
T ss_pred CeEEEEEEEecCCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcE
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999655899
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||||||+|++|+++|+++|+|++++++++++|.+++. .+..+.++|
T Consensus 314 y~iEINpRl~g~~~~te~vtGvDlv~~~l~~a~G~~l~~--------------------------------~~~~~~~~g 361 (1236)
T 3va7_A 314 YFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPDF--------------------------------DNTKIEVSG 361 (1236)
T ss_dssp EEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCG--------------------------------GGCCCCCCS
T ss_pred EEEEEECCCCCccHHHHHHHCCCHHHHHHHHHCCCCCCC--------------------------------ccccccccc
Confidence 999999999999999999999999999999999998752 112344679
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
|++++|+|+|||.++|.|++|++..+.++.+ ++++..+.+|+.|+++|||++|+||++|+||++|+++|.+||+++.|
T Consensus 362 ~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g--vrvd~~v~~G~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~i 439 (1236)
T 3va7_A 362 ASIEARLYAENPVKDFRPSPGQLTSVSFPSW--ARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAV 439 (1236)
T ss_dssp EEEEEEEESEETTTTTEECCEECCEEECCTT--SEEEECCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEE
T ss_pred eEEEEEEecCCcccccCCCCceEEEEEcCCc--cEecccccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEEE
Confidence 9999999999999999999999999988864 88888899999999999999999999999999999999999999999
Q ss_pred ecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 520 RGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 520 ~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 440 ~G-~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1236)
T 3va7_A 440 YG-CITNIDYLRSIASSKMFKEAKVATKVLDSF 471 (1236)
T ss_dssp ES-SCCSHHHHHHHHHCHHHHHTCCCTTGGGGC
T ss_pred eC-cccCHHHHHHHhCCHHHhCCCCcchhhhhc
Confidence 99 999999999999999999999999999986
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=708.31 Aligned_cols=451 Identities=33% Similarity=0.552 Sum_probs=352.4
Q ss_pred hcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-------CC
Q 000092 41 SLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-------TN 113 (2267)
Q Consensus 41 ~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-------~~ 113 (2267)
++|| ||+||||||||++|++++|+|+++|++++ +++++.+..+.+.++||+++.+|.. ..
T Consensus 9 ~~~~--~~~~~lianrGeia~riiraa~elGi~vv-----------av~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~ 75 (1165)
T 2qf7_A 9 HHGG--PISKILVANRSEIAIRVFRAANELGIKTV-----------AIWAEEDKLALHRFKADESYQVGRGPHLARDLGP 75 (1165)
T ss_dssp ---C--CCCEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCT
T ss_pred ccCC--cceEEEEcCCcHHHHHHHHHHHHcCCEEE-----------EEECCCcccchhHHhCCEEEEcCCcccccccCCc
Confidence 3444 68999999999999999999999998885 4444666778999999999999874 45
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCC
Q 000092 114 NNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2267)
Q Consensus 114 ~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~ 193 (2267)
..+|+|++.|+++|+++++|+|+||||+++|++.+++.|++.|++|+||++++++.++||..++++++++|||+|||..
T Consensus 76 ~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~- 154 (1165)
T 2qf7_A 76 IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATE- 154 (1165)
T ss_dssp THHHHCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC-----
T ss_pred cccccCHHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeC-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCC----CC
Q 000092 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP----GS 269 (2267)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~----~~ 269 (2267)
..+++.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+..++. +.
T Consensus 155 --------------------~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~ 214 (1165)
T 2qf7_A 155 --------------------PLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKD 214 (1165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCC
Confidence 015678888889999999999999999999999999999999999998876532 46
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEE
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVE 349 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVE 349 (2267)
+++||+|+++++|++|++++|++|+++++++|+|++||+|++.++.+|++.++++..++|.+.+.++++++||+|++++|
T Consensus 215 ~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vE 294 (1165)
T 2qf7_A 215 EVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVE 294 (1165)
T ss_dssp -----CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence 89999999988999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000092 350 YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2267)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2267)
|++++++|++||||+|||+|++|+++++++|+|++++++++++|.+++.++ +.+.
T Consensus 295 f~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~------------------------~g~p- 349 (1165)
T 2qf7_A 295 YLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQ------------------------SGVP- 349 (1165)
T ss_dssp EEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGG------------------------GTCC-
T ss_pred EEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccc------------------------cccc-
Confidence 999854788999999999999999999999999999999999999886310 0000
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEee-eeCCcccccCCcccEEEEEEeCCHHHHHH
Q 000092 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSV-KSGGGIHEFSDSQFGHVFAFGESRALAIA 508 (2267)
Q Consensus 430 ~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v-~~G~~i~~~~Ds~~g~via~G~~reeA~~ 508 (2267)
.+.....+||+++|||++|+|..+|.|++|+|..+..+..++++++.++ .+|..|+++|||++|+|+++|+|+++|++
T Consensus 350 -~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~ 428 (1165)
T 2qf7_A 350 -NQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAIS 428 (1165)
T ss_dssp -CGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHH
T ss_pred -cccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHH
Confidence 1223346799999999999999999999999998888877899988765 57999999999999999999999999999
Q ss_pred HHHHhhcceEEecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 509 NMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 509 ~l~~AL~el~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
+|.++|++++|+| ++||++||+++|++|+|++|+++|+|||++
T Consensus 429 ~~~~al~~i~i~G-~~tni~~~~~~~~~~~f~~~~~~t~~~~~~ 471 (1165)
T 2qf7_A 429 RMDRALREFRIRG-VATNLTFLEAIIGHPKFRDNSYTTRFIDTT 471 (1165)
T ss_dssp HHHHHHHHCEEES-SCCSHHHHHHHHTSHHHHTTCCCTTTTTTC
T ss_pred HHHHHhhcEEEec-ccCCHHHHHHHhcCHHhhcCCccchhhhcC
Confidence 9999999999999 999999999999999999999999999986
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-62 Score=620.16 Aligned_cols=443 Identities=33% Similarity=0.523 Sum_probs=403.4
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||||+|+|+.+++++++++++|++++ ++..+.+.++++.++||+++.+|+.....+|.|.+.|+++|
T Consensus 1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~ 69 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTV-----------AIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIA 69 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEE-----------EEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHH
T ss_pred CceEEEeCCCHHHHHHHHHHHHcCCEEE-----------EEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHH
Confidence 6899999999999999999999999885 33335567788999999999987766677999999999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
++.++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~--------------- 134 (451)
T 2vpq_A 70 TSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSD--------------- 134 (451)
T ss_dssp HHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCS---------------
T ss_pred HHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcc---------------
Confidence 99999999999999999988889999999999999999999999999999999999999999761
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhi 283 (2267)
..+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+. ...+++||+|++|++|+
T Consensus 135 ------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~ 208 (451)
T 2vpq_A 135 ------GLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHI 208 (451)
T ss_dssp ------SCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEE
T ss_pred ------cCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEE
Confidence 01678999999999999999999999999999999999999999998876531 24689999999998899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+|++++|++|+++.+..++|+++++|++..+.+|++.++++..+++.+.+.++++++||.|++++||++++++|++||||
T Consensus 209 ~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viE 288 (451)
T 2vpq_A 209 EIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFME 288 (451)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEE
Confidence 99999999899999999999999999999999999888999999999999999999999999999999984478899999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+|+++++++.++|+|++++++++++|.+++.. +..+...+|++.
T Consensus 289 iN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~~~~~--------------------------------~~~~~~~~~a~~ 336 (451)
T 2vpq_A 289 MNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLPYK--------------------------------QEDIKLTGHAIE 336 (451)
T ss_dssp EECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCSCC--------------------------------GGGCCCCSEEEE
T ss_pred eeCCCCCceehhhHHhCCCHHHHHHHHHCCCCCCCc--------------------------------ccccCcCceEee
Confidence 999999999999999999999999999999987521 112234589999
Q ss_pred EEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEeccc
Q 000092 444 VRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEI 523 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~v 523 (2267)
+++++++|..+|.|++|.+..+.++..++|++++.+.+|..+++++++++|||+++|+|+++|++++.++++++.|+| +
T Consensus 337 ~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g-~ 415 (451)
T 2vpq_A 337 FRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLG-I 415 (451)
T ss_dssp EEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCCCTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEES-S
T ss_pred eEeeeeccccccCCCCCEEeEEECCCCCCcccccccccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccEEeC-c
Confidence 999999999899999999999888877899888888999999889999999999999999999999999999999999 8
Q ss_pred ccCHHHHHHhcCCcccccccccchhhhhhhhh
Q 000092 524 RTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2267)
Q Consensus 524 ~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2267)
.||++||++++++|+|++|+++|+|||+++..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (451)
T 2vpq_A 416 DTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIM 447 (451)
T ss_dssp CCSHHHHHHHHTCHHHHHTCCCTTTTTTSCTT
T ss_pred CCCHHHHHHHhCCHhhhcCCCccHHHhhhhhh
Confidence 99999999999999999999999999987543
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-62 Score=620.11 Aligned_cols=447 Identities=32% Similarity=0.527 Sum_probs=402.3
Q ss_pred CCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCC-CCCCCccCHHHH
Q 000092 45 KKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGG-TNNNNYANVQLI 123 (2267)
Q Consensus 45 ~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~-~~~~~Y~dvd~I 123 (2267)
.+|||||||+|+|+.+++++++++++|++++ ++..+.+..+++.++||+++.+|.. ....+|.|.+.|
T Consensus 3 ~~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l 71 (461)
T 2dzd_A 3 TRRIRKVLVANRGEIAIRVFRACTELGIRTV-----------AIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGI 71 (461)
T ss_dssp CCCCSEEEECSCHHHHHHHHHHHHHHTCEEE-----------EEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHH
T ss_pred CCcCcEEEEECCcHHHHHHHHHHHHcCCEEE-----------EEECCcccccchhhhCCEEEEcCCCCCccccccCHHHH
Confidence 3578999999999999999999999999885 3333555677899999999999864 334578999999
Q ss_pred HHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcc
Q 000092 124 VEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCL 203 (2267)
Q Consensus 124 l~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~ 203 (2267)
+++|++.++|+|+||+|+.+|++.+++.|++.|++++||+++++..++||..++++++++|||+|||..
T Consensus 72 ~~~~~~~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~----------- 140 (461)
T 2dzd_A 72 IEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSD----------- 140 (461)
T ss_dssp HHHHHHTTCCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCS-----------
T ss_pred HHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcc-----------
Confidence 999999999999999999999988899999999999999999999999999999999999999999862
Q ss_pred cccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccc
Q 000092 204 VTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQ 279 (2267)
Q Consensus 204 ~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g 279 (2267)
..+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+ ....+++||+|++|
T Consensus 141 ----------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 210 (461)
T 2dzd_A 141 ----------GPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN 210 (461)
T ss_dssp ----------SCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred ----------cCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC
Confidence 0167899999999999999999999999999999999999999999887654 23468999999999
Q ss_pred cceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEY 359 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~ 359 (2267)
++|++|++++|.+|+++.+++++|+.+++|++.++.+|++.++++..+++.+.+.++++++||.|.+++||+++ ++++
T Consensus 211 ~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~--~~~~ 288 (461)
T 2dzd_A 211 PKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVS--GDEF 288 (461)
T ss_dssp CEEEEEEEEECTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE--TTEE
T ss_pred CeEEEEEEEEcCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEe--CCCE
Confidence 89999999999999999999999999999999999999977999999999999999999999999999999999 4889
Q ss_pred EEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCce
Q 000092 360 YFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKG 439 (2267)
Q Consensus 360 yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~G 439 (2267)
||||+|||+|++|+++++++|+|++++++++++|.+++.++ +.|. .+.....+|
T Consensus 289 ~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~------------------------~~~~--~~~~~~~~g 342 (461)
T 2dzd_A 289 YFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHE------------------------VGIP--KQEDIRING 342 (461)
T ss_dssp EEEEEESSCCGGGHHHHHHHCCCHHHHHHHHHTTCCTTSTT------------------------TCCC--CGGGCCCCS
T ss_pred EEEEEECCCCCceeeEEeecCCCHHHHHHHHHcCCCccccc------------------------cccc--cccccccce
Confidence 99999999999999999999999999999999999886321 1111 112245679
Q ss_pred EEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEe-eeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 440 HCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFS-VKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 440 hai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~-v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
|++++|+++++|..+|.|++|.++.+..+..++++.+.. +.+|++|+++|||++|+|+++|+|+++|++++.++++++.
T Consensus 343 ~~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~ 422 (461)
T 2dzd_A 343 YAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFR 422 (461)
T ss_dssp EEEEEEEESEEGGGTTEECCEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCE
T ss_pred eEEEeeecccCCccCccCCCCeeeEEecCCCCCeEeecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcE
Confidence 999999999999999999999999888887788887654 4799999999999999999999999999999999999999
Q ss_pred EecccccCHHHHHHhcCCcccccccccchhhhhh
Q 000092 519 IRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSR 552 (2267)
Q Consensus 519 I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~ 552 (2267)
|+| ++||+.|+.+++.+|+|++|+++|+|||++
T Consensus 423 ~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
T 2dzd_A 423 IRG-IKTNIPFLENVVQHPKFLSGEYDTSFIDTT 455 (461)
T ss_dssp EES-SCCSHHHHHHHHHSHHHHTSCCCTTHHHHC
T ss_pred EeC-CcCCHHHHHHHhCChhhhCCCccchhhhcc
Confidence 999 799999999999999999999999999986
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-62 Score=617.24 Aligned_cols=440 Identities=29% Similarity=0.509 Sum_probs=401.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|+|||||+|+|+.+++++++++++|++++ ++..+.+..+++.++||+++.+++. ...+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~~~p~-~~~~~~d~~~l~~~ 68 (451)
T 1ulz_A 1 MVNKVLVANRGEIAVRIIRACKELGIPTV-----------AIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINL 68 (451)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEE-----------EEECGGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHH
T ss_pred CCceEEEECCcHHHHHHHHHHHHcCCeEE-----------EEechhhcccchhhhCcEEEEcCCC-cccccCCHHHHHHH
Confidence 68999999999999999999999999985 4444566778999999999998654 56689999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|+||+|+.+|++.+++.|++.|++++||+++++..++||..++++++++|||+|+|..
T Consensus 69 ~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 134 (451)
T 1ulz_A 69 ALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSD-------------- 134 (451)
T ss_dssp HHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCS--------------
T ss_pred HHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcc--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999861
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rh 282 (2267)
..+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+..+ ....+++||+|++|++|
T Consensus 135 -------~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e 207 (451)
T 1ulz_A 135 -------GVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKH 207 (451)
T ss_dssp -------SSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEE
T ss_pred -------cccCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeE
Confidence 0167899999999999999999999999999999999999999999887653 22468999999998899
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
++|++++|.+|+++.+..|+|+++++|++.++.+|++.++++..+++.+.+.++++++||+|++++||++++ +|++|||
T Consensus 208 ~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~vi 286 (451)
T 1ulz_A 208 IEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFI 286 (451)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEE
T ss_pred EEEEEEEcCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCCEEEE
Confidence 999999998899999999999999999999999999878999999999999999999999999999999984 6789999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEE
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCV 442 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai 442 (2267)
|+|||++++++++++++|+|++++++++++|.|++.. +..+...||++
T Consensus 287 EiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~--------------------------------~~~~~~~~~a~ 334 (451)
T 1ulz_A 287 EMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIK--------------------------------QEDVKFNGYAI 334 (451)
T ss_dssp EEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCCCC--------------------------------GGGCCCCSEEE
T ss_pred EeeCCCCccchHHHHHhCCCHHHHHHHHHcCCCCCCc--------------------------------cccCCCceEEE
Confidence 9999999999999999999999999999999987621 11123457999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEecc
Q 000092 443 AVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGE 522 (2267)
Q Consensus 443 ~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G~ 522 (2267)
++++++++|..+|.|.+|++..+.++..++++++..+.+|..+++++|+++|||+++|+|+++|++++.++++++.|+|
T Consensus 335 ~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g- 413 (451)
T 1ulz_A 335 ECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITG- 413 (451)
T ss_dssp EEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEECS-
T ss_pred EEeccccCcccCcCCCCceeceEECCCCCCcccccCccCCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEEeC-
Confidence 9999999998899999999999988877889888888999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 523 IRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 523 v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
++||+.||+++|.+|+|++|+++|+|||+++
T Consensus 414 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (451)
T 1ulz_A 414 VKTTIPLLINIMKEKDFKAGKFTTKYLEEHP 444 (451)
T ss_dssp SCCSHHHHHHHHHCHHHHHTCCCTTTTTTCG
T ss_pred ccCCHHHHHHHhCCHHHhcCCCcchhhhhhH
Confidence 9999999999999999999999999999874
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=613.29 Aligned_cols=441 Identities=32% Similarity=0.574 Sum_probs=401.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|+|+.+++++++++++|++++ ++..+.+.++++.++||+++.+|+.....+|.|.+.|+++
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~ 69 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTV-----------AVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISA 69 (449)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEE-----------EEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceEEEeCCcHHHHHHHHHHHHcCCeEE-----------EEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHH
Confidence 68999999999999999999999999885 3333556778999999999998655667789999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+++++|+|+||+|+.+|++.+++.|++.|++++||++++++.++||..++++++++|||+|||..
T Consensus 70 ~~~~~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 135 (449)
T 2w70_A 70 AEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSD-------------- 135 (449)
T ss_dssp HHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCS--------------
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcc--------------
Confidence 999999999999999999988889999999999999999999999999999999999999999861
Q ss_pred CcccccccccCCHHHH-HHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccc
Q 000092 207 PDDVYRQACVYTTEEA-IASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSR 281 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea-~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~r 281 (2267)
..+++.+++ .++++++|||+||||..|+||+|+++|++.+|+.++++.+..+. .+.+++||+|++|++
T Consensus 136 -------~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~ 208 (449)
T 2w70_A 136 -------GPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPR 208 (449)
T ss_dssp -------SCCCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCE
T ss_pred -------cccCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCe
Confidence 016678888 88899999999999999999999999999999999998876531 246899999999889
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|+++++.+|+++++..|+|+++++|++..+.+|++.++++..+++.+.+.++++++||.|++++||+++ ++++||
T Consensus 209 e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~v 286 (449)
T 2w70_A 209 HVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYF 286 (449)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEE
T ss_pred EEEEEEEEcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE--CCCEEE
Confidence 999999999889999999999999999999999999987899999999999999999999999999999999 488999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
||+|||+++++++++.++|+|++++++++++|.|++. .+..+...||+
T Consensus 287 iEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~--------------------------------~~~~~~~~~~~ 334 (449)
T 2w70_A 287 IEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSI--------------------------------KQEEVHVRGHA 334 (449)
T ss_dssp EEEECSCCTTHHHHHHHHCCCHHHHHHHHHHTCCCSS--------------------------------CGGGCCCCSEE
T ss_pred EEEECCCCccchHHHHHhCCCHHHHHHHHHCCCCCCC--------------------------------chhccccceeE
Confidence 9999999999999999999999999999999998752 01122345899
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+++++++++| .+|.|.+|.+..+.++..++++++..+.+|..+++++++++|||+++|+|+++|++++.++++++.++|
T Consensus 335 ~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g 413 (449)
T 2w70_A 335 VECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDG 413 (449)
T ss_dssp EEEEEECBCT-TTCCBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEEES
T ss_pred EEEeecccCc-cccCCCCCEeceEECCCCCcEEEEeccccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEEeC
Confidence 9999999999 899999999998888877889888888899999889999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhcCCcccccccccchhhhhhhhh
Q 000092 522 EIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555 (2267)
Q Consensus 522 ~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~~~ 555 (2267)
++||+.||+++|++|+|++|+++|+|||+++++
T Consensus 414 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
T 2w70_A 414 -IKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 446 (449)
T ss_dssp -SCCSHHHHHHHHTCHHHHHCCCCTTHHHHHHTC
T ss_pred -cCCCHHHHHHHHcChhhccCCceehhhhhhhhc
Confidence 999999999999999999999999999998654
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=461.67 Aligned_cols=387 Identities=14% Similarity=0.139 Sum_probs=318.5
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.+++||||+|+|+.+++++++++++|++++ ++ +..++++++.++||+++.+| |.|.+.|++
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v-----------~v-~~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~ 65 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTI-----------AG-TMPNAHKPCLNLADEISYMD-------ISNPDEVEQ 65 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEE-----------EE-ECSSCCHHHHHHCSEEEECC-------TTCHHHHHH
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEE-----------EE-cCCCCCCcchhhCCeEEEec-------CCCHHHHHH
Confidence 346899999999999999999999999985 33 12335789999999999884 568999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|+++++|+|+|+ |+.++...+++.+++.|+ +||+++++..++||..++++++++|||+|+|..
T Consensus 66 ~~~~~~~d~v~~~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------- 129 (403)
T 4dim_A 66 KVKDLNLDGAATC-CLDTGIVSLARICDKENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFV------------- 129 (403)
T ss_dssp HTTTSCCSEEECC-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEEC-------------
T ss_pred HHHHcCCCEEEeC-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEE-------------
Confidence 9999999999997 777777778888888896 699999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieV 285 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+..+.++++|+|++| .|++|
T Consensus 130 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv 198 (403)
T 4dim_A 130 ----------VRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGA 198 (403)
T ss_dssp ----------CCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEE
T ss_pred ----------eCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEE
Confidence 7899999999999999999999999999999999999999999999988877789999999987 79999
Q ss_pred EEEEcCCCCEEEecccccccccc--cceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCcee-eeEEEEEEEccCCcEEEe
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRR--HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVG-AATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr--~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~G-a~tVEfl~d~~~g~~yfL 362 (2267)
.++.+ +|++..+.......... ........|+. ++++..++|.+.+.++++++||.| ++++||+++ ++++||+
T Consensus 199 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~i 274 (403)
T 4dim_A 199 QAFVY-KNDVLFVMPHGDETYMSHTAVPVGHYVPLD-VKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYII 274 (403)
T ss_dssp EEEEE-TTEEEEEEEEEEEEEESSSEEEEEEEESCC-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEE
T ss_pred EEEEE-CCEEEEEEEecceeccCCCCcceeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEE
Confidence 99875 36666543221111000 00111234666 889999999999999999999996 999999998 7899999
Q ss_pred eeCccCcCCc--ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceE
Q 000092 363 ELNPRLQVEH--PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGH 440 (2267)
Q Consensus 363 EINpRlqgeh--pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gh 440 (2267)
|+|||+++++ .+++.++|+|++++++++++|.|++.++ +......+|
T Consensus 275 EiN~R~~~~~~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~-------------------------------~~~~~~~~~ 323 (403)
T 4dim_A 275 ELTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFW-------------------------------SQKSKENKA 323 (403)
T ss_dssp EEESSCCSTTHHHHHHHHHTSCHHHHHHHHHTTCCTHHHH-------------------------------TTCCSSCCE
T ss_pred EEcCCCCCCcHHHHHHHHhCcCHHHHHHHHHcCCCccccc-------------------------------ccccccccc
Confidence 9999999986 4788999999999999999999873211 111122344
Q ss_pred EEEEEEccCCCCCCCCCCCCccccccccCCCc--E-EEEEeeeeCCcccccCCc--ccEEEEEEeCCHHHHHHHHHHhhc
Q 000092 441 CVAVRVTSEDPDDGFKPTSGKVQELSFKSKPN--V-WAYFSVKSGGGIHEFSDS--QFGHVFAFGESRALAIANMVLGLK 515 (2267)
Q Consensus 441 ai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~--V-~~~~~v~~G~~i~~~~Ds--~~g~via~G~~reeA~~~l~~AL~ 515 (2267)
+.+|++. |.|.+|+|..+.++..++ + .++..+.+|..|++++|| ++|+|+++|+|+++|++++.++++
T Consensus 324 -~~~~~~~------~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~ 396 (403)
T 4dim_A 324 -GLARMII------ETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIIN 396 (403)
T ss_dssp -EEEEEEC------CSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred -ceEEEEE------ecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhc
Confidence 5678865 568899999988765443 3 356789999999999999 899999999999999999999999
Q ss_pred ceEEe
Q 000092 516 EIQIR 520 (2267)
Q Consensus 516 el~I~ 520 (2267)
+++|+
T Consensus 397 ~~~i~ 401 (403)
T 4dim_A 397 NINII 401 (403)
T ss_dssp TEEEE
T ss_pred cEEEE
Confidence 99885
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=431.21 Aligned_cols=356 Identities=15% Similarity=0.109 Sum_probs=279.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||||+|+|..+..+++++|++||+|+ ++ |.++++++.++||+++++|. +.|.+.+++++
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv-----------~v--d~~~~~~~~~~aD~~~~~~~------~~d~~~~~~~~ 61 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVV-----------LV--DKNPQALIRNYADEFYCFDV------IKEPEKLLELS 61 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTTTTSSEEEECCT------TTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCChhHhhCCEEEECCC------CcCHHHHHHHh
Confidence 7999999999999999999999999986 55 66788999999999999964 34667777666
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+ ++|+|+|++|+.+++..+...+++.|+ ++||++++++.++||..+|++++++|||+|+|..
T Consensus 62 ~--~~D~v~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~--------------- 123 (363)
T 4ffl_A 62 K--RVDAVLPVNENLACIEFLNSIKEKFSC-PVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRP--------------- 123 (363)
T ss_dssp T--SSSEEEECCCCHHHHHHHHHHGGGCSS-CBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSC---------------
T ss_pred c--CCCEEEECCCChhHHHHHHHHHHHCCC-ccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCcee---------------
Confidence 4 689999999987765444454555555 5799999999999999999999999999998643
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+|||+||||+.|+||+|+++|+|.+++... ...+++|+|++| +|++|++
T Consensus 124 ---------------------ig~P~vvKp~~g~g~~gv~~v~~~~~~~~~---------~~~~~~ee~i~g-~e~sv~~ 172 (363)
T 4ffl_A 124 ---------------------SKPPYFVKPPCESSSVGARIIYDDKDLEGL---------EPDTLVEEYVEG-EVVSLEV 172 (363)
T ss_dssp ---------------------SSSCEEEECSSCCTTTTCEEEC------CC---------CTTCEEEECCCS-EEEEEEE
T ss_pred ---------------------cCCCEEEEECCCCCCcCeEEeccHHHhhhh---------ccchhhhhhccC-cEEEEEE
Confidence 489999999999999999999999887532 457899999987 7999999
Q ss_pred EEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
++|+.+.++....++|..++.+++.+..+|.. +++++.+.++++++||+|+++|||+++ ++++||||+|||
T Consensus 173 ~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~a~~~~~~l~~~G~~~vef~~~--~~~~~viEiN~R 243 (363)
T 4ffl_A 173 VGDGSHFAVVKETLVHIDETYDCHMVTPLPAN-------PLFRQISHDLAANLPLKGIMDVEAIFG--PKGLRVIEIDAR 243 (363)
T ss_dssp EEESSCEEECCCEEEEECTTSCEEEEEECCCC-------HHHHHHHHHHHHTTTCEEEEEEEEEEE--TTEEEEEEEECS
T ss_pred EEECCeEEEEEEEEeccCCcccceeecchhHH-------HHHHHHHHHHHHhCCccceeeeeeEEe--CCeEEEEEEeCC
Confidence 99998888888888888888888777655543 568899999999999999999999999 577999999999
Q ss_pred CcCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEE
Q 000092 368 LQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRV 446 (2267)
Q Consensus 368 lqgehp-vtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI 446 (2267)
++++++ ++++++|+|++++++++++|.+++.. .....+|++.+++
T Consensus 244 ~~g~~~~~~~~~~g~dl~~~~~~~~~g~~~~~~----------------------------------~~~~~~~~~~~~~ 289 (363)
T 4ffl_A 244 FPSQTPTVVYYSSGINLIELLFRAFTDGVEEIR----------------------------------AIPENKYCIYEHL 289 (363)
T ss_dssp CCSSHHHHHHHHHCCCHHHHHHHHTTTCCCCC--------------------------------------CCCEEEEEEE
T ss_pred CCCChHHHHHHHHCcCHHHHHHHHHCCCCCCcc----------------------------------ccCCCceEEEEEE
Confidence 999886 89999999999999999999987521 1122356666666
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeC-CcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEe
Q 000092 447 TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSG-GGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIR 520 (2267)
Q Consensus 447 ~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G-~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~ 520 (2267)
.+++. ..+.|..+.+. ...+++.. +....+ +.....+++++|+|++||+||+||++++.+||+.++.+
T Consensus 290 ~~~~~-~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~vi~~G~~~~eA~~k~~~al~~i~~~ 358 (363)
T 4ffl_A 290 MFGEN-GVLIPVGEQVL----SMGSDYGK-FYEEPGIEIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKER 358 (363)
T ss_dssp EECGG-GBEEECCHHHH----TTCSEEEE-EEEETTEEEEEEESSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CccCCCCceEE----ecCCCeeE-EEecCCCCCEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 66442 33444443332 12223322 222222 12234688999999999999999999999999988654
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=475.22 Aligned_cols=396 Identities=19% Similarity=0.268 Sum_probs=326.4
Q ss_pred CCccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
+.++||||+|+|++ +.+++++++++||+++ ++.++.+....+.++||+++..|
T Consensus 5 ~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv-----------~v~~~~~~~~~~~~~ad~~~i~p----- 68 (1073)
T 1a9x_A 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-----------NVNSNPATIMTDPEMADATYIEP----- 68 (1073)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-----------EECSCTTCGGGCGGGSSEEECSC-----
T ss_pred CCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEE-----------EEeCCcccccCChhhCcEEEECC-----
Confidence 56899999999985 6789999999999986 44444444446788999988554
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcC-CCCC--chH--HHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHA-SEIP--ELP--DTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLP 189 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~-sEn~--~la--~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp 189 (2267)
.|.+.|.++++++++|+|+|++|+. .++. .+. ..|++.|+.++||+++++..++||..++++++++|||+|+
T Consensus 69 ---~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~ 145 (1073)
T 1a9x_A 69 ---IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETAR 145 (1073)
T ss_dssp ---CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCS
T ss_pred ---CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCC
Confidence 3689999999999999999998852 1211 122 2677889999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCC
Q 000092 190 WSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 269 (2267)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~ 269 (2267)
|.. +++.+++.++++++|||+||||+.|+||+|+++|+|.+|+.++++.+....+..
T Consensus 146 ~~~-----------------------v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~ 202 (1073)
T 1a9x_A 146 SGI-----------------------AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTK 202 (1073)
T ss_dssp EEE-----------------------ESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTS
T ss_pred EEE-----------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCC
Confidence 876 788999999999999999999999999999999999999999999888777777
Q ss_pred cEEEEEeccccceeeEEEEEcCCCCEEEecccccccccc------cceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce
Q 000092 270 PIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR------HQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV 343 (2267)
Q Consensus 270 ~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr------~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~ 343 (2267)
+++||+|++|.+|+++++++|.+|+++.+ |++++. +++.++.+|+..++++..++|.+.+.++++++||+
T Consensus 203 ~vlvEe~I~G~~E~~v~v~~d~~g~~v~~----~~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~ 278 (1073)
T 1a9x_A 203 ELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVE 278 (1073)
T ss_dssp CEEEEECCTTSEEEEEEEEECTTCCEEEE----EEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cEEEEEccCCCeEEEEEEEEeCCCCEEEE----EEEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999998999999999999999887 666553 35567778998899999999999999999999999
Q ss_pred -eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 344 -GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 344 -Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
|.++|||++++++|++||||||||++++++++++++|+|+++.++++++|.+++.+++
T Consensus 279 ~G~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~--------------------- 337 (1073)
T 1a9x_A 279 TGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN--------------------- 337 (1073)
T ss_dssp SEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC---------------------
T ss_pred cCceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCCCHHHHHHHHHcCCChHHhhc---------------------
Confidence 9999999999657899999999999999999999999999999999999999874321
Q ss_pred cccCCCccccCCCCCceEEEEEEEccC-CCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeC
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSE-DPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aE-dp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~ 501 (2267)
+++.+ +|. .|.|+.|.+. +.+|..+ .+...+.+..+...++| +|||+++|+
T Consensus 338 ----------------------~i~~~~~~a-~f~p~~~~v~-~~ip~~~---~~~~~~~~~~~~~~~~~-~G~v~~~g~ 389 (1073)
T 1a9x_A 338 ----------------------DITGGRTPA-SFEPSIDYVV-TKIPRFN---FEKFAGANDRLTTQMKS-VGEVMAIGR 389 (1073)
T ss_dssp ----------------------TTTTTCSBS-CSCCBCSSEE-EEEEECC---GGGCTTSCCBCCSSCCC-CEEEEEEES
T ss_pred ----------------------cccCccCHH-HcccCCCcEE-EEccccc---ccccCCCCcccCCCccC-cEEEEEEcC
Confidence 12223 342 5667766552 2222211 01112234556666666 899999999
Q ss_pred CHHHHHHHHHHhhcceEEecccccC--------HHHHHHhcCCcc
Q 000092 502 SRALAIANMVLGLKEIQIRGEIRTN--------VDYTIDLLHASD 538 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G~v~tn--------~~~l~~ll~~~~ 538 (2267)
|++||+++|.++|+ +.+.| +.+| .+.|.+.|.+|.
T Consensus 390 ~~~ea~~ka~~~l~-~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~ 432 (1073)
T 1a9x_A 390 TQQESLQKALRGLE-VGATG-FDPKVSLDDPEALTKIRRELKDAG 432 (1073)
T ss_dssp SHHHHHHHHHHHSS-SSCSS-SCCSSCTTCTTHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHhhc-ccccC-cCccccccccccHHHHHHHHhCCC
Confidence 99999999999998 88999 6644 577888888877
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=425.15 Aligned_cols=395 Identities=15% Similarity=0.128 Sum_probs=307.0
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
+..|+|+|+|+|.....++++||++|++++ +++++.+..+.+...+|+++.+|...+.+.+ .+.+.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv-----------~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~--~~~~~~ 69 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVT-----------FFYNSAEDFPGNLPAVERCVPLPLFEDEEAA--MDVVRQ 69 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEE-----------EEEETTSCCCCSCTTEEEEEEECTTTCHHHH--HHHHHH
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEE-----------EEECCCcccccCHhhccEEEecCCCCCHHHH--HHHHHH
Confidence 346899999999999999999999999985 3334555667788899999999754333333 566777
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
++++.++|+|+++++...+ ..+..+++.|+ +||+++++..++||..+|++++++|||+|+|..
T Consensus 70 ~~~~~~id~V~~~~e~~~~--~~a~l~e~lgl--pg~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 132 (425)
T 3vot_A 70 TFVEFPFDGVMTLFEPALP--FTAKAAEALNL--PGLPFTTMENCRNKNKTRSILQQNGLNTPVFHE------------- 132 (425)
T ss_dssp HHHHSCCSEEECCCGGGHH--HHHHHHHHTTC--SSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------------
T ss_pred hhhhcCCCEEEECCchhHH--HHHHHHHHcCC--CCCCHHHHHHhhCHHHHHHHHHHCCCCCCceec-------------
Confidence 8888999999988554332 13445566674 599999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC---------CCCcEEEEEe
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV---------PGSPIFIMKV 276 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~---------~~~~I~VEey 276 (2267)
+++.+++. +.++|||+||||..|+||+||++|+|.+|+.++++.+.... .+.++++|+|
T Consensus 133 ----------~~~~~~~~--~~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~ 200 (425)
T 3vot_A 133 ----------FHTLADLE--NRKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQF 200 (425)
T ss_dssp ----------ESSGGGGT--TCCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEEC
T ss_pred ----------cCcHHHHH--HhhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEE
Confidence 45555553 35799999999999999999999999999999999886543 2568999999
Q ss_pred ccccceeeEEEEEcCCCC--EEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCce-eeeEEEEEEE
Q 000092 277 ASQSRHLEVQLLCDQYGN--VAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYV-GAATVEYLYS 353 (2267)
Q Consensus 277 I~g~rhieVqvl~D~~G~--vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~-Ga~tVEfl~d 353 (2267)
++| +|++|+++.++ |+ ++.+..+.|+.+..+++.....|+. ++++..+++.+.+.++++++|+. |++|+||+++
T Consensus 201 i~G-~e~sv~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~ 277 (425)
T 3vot_A 201 IDG-PEFAIETLSIQ-GNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLD 277 (425)
T ss_dssp CCS-CEEEEEEEEET-TEEEEEEEEEEECCCCSBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred ecC-cEEEEEEEEeC-CcEEEEeEEEEeccCCCccccceEeeccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEE
Confidence 987 79999988764 44 4455666677777777777778987 88999999999999999999995 9999999998
Q ss_pred ccCCcEEEeeeCccCcCC---cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCcc
Q 000092 354 METGEYYFLELNPRLQVE---HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430 (2267)
Q Consensus 354 ~~~g~~yfLEINpRlqge---hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~ 430 (2267)
+ +|++||||+|||++|. |.++++++|+|+++++++.++|.+.... +
T Consensus 278 ~-dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~~---------------------------~--- 326 (425)
T 3vot_A 278 K-DGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESSE---------------------------F--- 326 (425)
T ss_dssp T-TCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGGG---------------------------S---
T ss_pred e-CCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCccccc---------------------------c---
Confidence 4 7789999999999775 5688999999999999999999654310 0
Q ss_pred ccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc----ccCCCcE-EEEEeeeeCCccccc--CCcccEEEEEEeCCH
Q 000092 431 QAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS----FKSKPNV-WAYFSVKSGGGIHEF--SDSQFGHVFAFGESR 503 (2267)
Q Consensus 431 ~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~----~~s~~~V-~~~~~v~~G~~i~~~--~Ds~~g~via~G~~r 503 (2267)
.....+..++....+.+ |.+|++..+. +...|+| ++...+++|..|.++ +++++|||+++|+|+
T Consensus 327 -~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~ 397 (425)
T 3vot_A 327 -EGEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSY 397 (425)
T ss_dssp -CSCCCCSSEEEEEECCC--------CSCEEEEEEETHHHHHTCTTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSH
T ss_pred -ccccccceEEEEEEEcC--------CCCeEEEecCCHHHHhcCCCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCH
Confidence 01122334554444433 3468776653 3456787 677778899998765 567899999999999
Q ss_pred HHHHHHHHHhhcceEEecccccCH
Q 000092 504 ALAIANMVLGLKEIQIRGEIRTNV 527 (2267)
Q Consensus 504 eeA~~~l~~AL~el~I~G~v~tn~ 527 (2267)
++|+++++++++.++|.. ++|+
T Consensus 398 ~ea~~~~~~~~~~i~i~~--~~~i 419 (425)
T 3vot_A 398 EECEAFYRELDDELHIIY--QNNL 419 (425)
T ss_dssp HHHHHHHHHHHHHCEEEE--CC--
T ss_pred HHHHHHHHHHhCccEEEE--eCCC
Confidence 999999999999999975 4554
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=412.46 Aligned_cols=378 Identities=15% Similarity=0.162 Sum_probs=299.9
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+++||||+|+|..+..++++++++|++++ ++ |.++++++.++||+.+.+| |.|.+.|+++
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~d~~~~~~-------~~d~~~l~~~ 69 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVI-----------AV--DRYADAPAMHVAHRSHVIN-------MLDGDALRRV 69 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEE-----------EE--ESSTTCGGGGGSSEEEECC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--ECCCCCchhhhccceEECC-------CCCHHHHHHH
Confidence 46799999999999999999999999875 34 3345678889999998874 5788999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
|++.++|+|+|++++...+ +++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 70 ~~~~~~d~v~~~~e~~~~~--~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~------------- 133 (391)
T 1kjq_A 70 VELEKPHYIVPEIEAIATD--MLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRF------------- 133 (391)
T ss_dssp HHHHCCSEEEECSSCSCHH--HHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEE-------------
T ss_pred HHHcCCCEEEECCCcCCHH--HHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeee-------------
Confidence 9999999999998876643 5677888999 6799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|+++++|+
T Consensus 134 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 203 (391)
T 1kjq_A 134 ----------ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEI 203 (391)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEE
Confidence 778899999999999999999999999999999999999999999887543 24689999999966899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+|.++.++.| .. +...-..............|++ ++++..+++.+.+.++++++||+|++++||+++ ++++||||
T Consensus 204 sv~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~viE 278 (391)
T 1kjq_A 204 TLLTVSAVDG-VH-FCAPVGHRQEDGDYRESWQPQQ-MSPLALERAQEIARKVVLALGGYGLFGVELFVC--GDEVIFSE 278 (391)
T ss_dssp EEEEEEETTE-EE-ECCCEEEEEETTEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEE
T ss_pred EEEEEEeCCC-eE-EccCcceEEECCEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCcEEEEE
Confidence 9999998766 22 2211000000011111234776 889999999999999999999999999999999 34899999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEE
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVA 443 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~ 443 (2267)
+|||+++++.++...+|+|++++++++++|.+++. +...+|++.
T Consensus 279 iN~R~~~~~~~~~~~~g~~~~~~~~~~~~G~~~~~------------------------------------~~~~~~~~~ 322 (391)
T 1kjq_A 279 VSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG------------------------------------IRQYGPAAS 322 (391)
T ss_dssp EESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC------------------------------------CCBCSSEEE
T ss_pred EECCCCCCcceeeeecCcCHHHHHHHHHcCCCCCC------------------------------------ccccCcEEE
Confidence 99999998766666679999999999999988752 112467888
Q ss_pred EEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 444 VRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 444 aRI~aEdp~~~F~Ps-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
+++++++|.. .|. .|... +.. |++.+... +.....+++.+|||+++|+|+++|++++.++++.++|+|
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~---~~~-pg~~v~~~----~~~~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 391 (391)
T 1kjq_A 323 AVILPQLTSQ--NVTFDNVQN---AVG-ADLQIRLF----GKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG 391 (391)
T ss_dssp EEECCEEEES--SCEEECGGG---SCB-TTEEEEEC----CCCCEEEECCCEEEEEECSSHHHHHHHHHHHHHHCEEEC
T ss_pred EEEEccCccc--ccccccHHH---HhC-CCCEEEEe----ccCCCCCCCeEEEEEEecCCHHHHHHHHHHHHhhheecC
Confidence 8999987532 232 23322 222 55433322 223355778899999999999999999999999999874
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=414.32 Aligned_cols=390 Identities=16% Similarity=0.180 Sum_probs=296.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+++||||+|+|..+..++++++++|++++ ++ |.++++++.++||+.+.+| |.|.+.|+++
T Consensus 18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~-----------~v--~~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~ 77 (433)
T 2dwc_A 18 SAQKILLLGSGELGKEIAIEAQRLGVEVV-----------AV--DRYANAPAMQVAHRSYVGN-------MMDKDFLWSV 77 (433)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCHHHHHSSEEEESC-------TTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhcceEEECC-------CCCHHHHHHH
Confidence 45799999999999999999999999885 34 3345678889999998874 5788999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
|++.++|+|++++++.+. .+++.|++.|+ ++||++++++.++||..+++++ +++|||+|+|..
T Consensus 78 ~~~~~~d~V~~~~e~~~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~------------- 141 (433)
T 2dwc_A 78 VEREKPDAIIPEIEAINL--DALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMY------------- 141 (433)
T ss_dssp HHHHCCSEEEECSSCSCH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEE-------------
T ss_pred HHHcCCCEEEECcccCCH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeE-------------
Confidence 999999999999987654 46777888998 7799999999999999999999 899999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CCCcEEEEEecccccee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+..+. .+.+++||+|+++++|+
T Consensus 142 ----------~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~ 211 (433)
T 2dwc_A 142 ----------ATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEV 211 (433)
T ss_dssp ----------ESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEE
T ss_pred ----------eCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeE
Confidence 678899999999999999999999999999999999999999998776543 24689999999966899
Q ss_pred eEEEEEcC--CCCEE-EecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 284 EVQLLCDQ--YGNVA-ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 284 eVqvl~D~--~G~vi-~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
+|.++.+. +|+++ .+...-..............|++ ++++..+++.+.+.++++++||+|++++||+++ ++++|
T Consensus 212 sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~--~~~~~ 288 (433)
T 2dwc_A 212 TELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVK--GDKVW 288 (433)
T ss_dssp EECCEEEECTTSCEEEEEECCEEEEESSSSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEE--TTEEE
T ss_pred EEEEEecccCCCCEeEEEecccceEEEcCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEe--CCcEE
Confidence 99999875 67742 22111000111111122235776 889999999999999999999999999999999 34899
Q ss_pred EeeeCccCcCCccee--hhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000092 361 FLELNPRLQVEHPVT--EWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2267)
Q Consensus 361 fLEINpRlqgehpvt--E~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2267)
|||+|||+++.+..+ ..++|+|++++++++++|.|++... +. .+..+...
T Consensus 289 viEiN~R~~~~~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~---------~~-------------------~~~~~~~~ 340 (433)
T 2dwc_A 289 ANEVSPRPHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEW---------VD-------------------GYRLFPML 340 (433)
T ss_dssp EEEEESSCCGGGGGHHHHSCTTCSHHHHHHHHHHTCCCCCEE---------ET-------------------TEEEECCS
T ss_pred EEEEeCCcCCCcceehhHhccCCCHHHHHHHHHcCCCCCccc---------cc-------------------cccccccc
Confidence 999999999875433 4467999999999999999875200 00 00112335
Q ss_pred eEEEEEEEccCCCCCCCCCC-CCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 439 GHCVAVRVTSEDPDDGFKPT-SGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 439 Ghai~aRI~aEdp~~~F~Ps-~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+|++.+++++++|. ..|. .|....+ ..|++.+... +.....+++.+|||+++|+|+++|++++.++++.+
T Consensus 341 ~~a~~~~v~~~~~~--~~~~i~g~~~~~---~~pg~~v~~~----~~~~~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i 411 (433)
T 2dwc_A 341 IPAATHVIKAKVSG--YSPRFRGLVKAL---SVPNATVRLF----GKPEAYVGRRLGIALAWDKDVEVAKRKAEMVAHMI 411 (433)
T ss_dssp SCEEEEEEECSSCE--ESCEEECHHHHT---TSTTEEEEEC----CCSEECTTCEEEEEEEECSSHHHHHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCCC--cCcCcchHHHHh---hCCCcEEEEe----cCCCCCCCCeEEEEEEEeCCHHHHHHHHHHHHhhe
Confidence 78888999998753 2222 2332212 2344432221 22234577889999999999999999999999999
Q ss_pred EEecc
Q 000092 518 QIRGE 522 (2267)
Q Consensus 518 ~I~G~ 522 (2267)
.++|+
T Consensus 412 ~~~~~ 416 (433)
T 2dwc_A 412 ELRTR 416 (433)
T ss_dssp EEECT
T ss_pred EEEee
Confidence 99993
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=402.09 Aligned_cols=360 Identities=20% Similarity=0.215 Sum_probs=294.3
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEM 129 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~ 129 (2267)
||||+|+|..+..++++++++|++++ ++ |.+.+.++.++||+ +.. +|.|.+.++++|
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~a~~-~~~-------~~~d~~~l~~~~-- 57 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPLGLSFR-----------FL--DPSPEACAGQVGEL-VVG-------EFLDEGALLRFA-- 57 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTBTCCEE-----------EE--ESCTTCGGGGTSEE-EEC-------CTTCHHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCChHHHhhce-Eec-------CCCCHHHHHHHH--
Confidence 69999999999999999999999875 44 33355677889998 543 567899999999
Q ss_pred cCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 130 TRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 130 ~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
.++|+|++++++.. ..+.+.|++.| ++||+++++..++||..++++++++|||+|+|..
T Consensus 58 ~~~d~v~~~~e~~~--~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~----------------- 116 (369)
T 3aw8_A 58 EGLALVTYEFENVP--VEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHP----------------- 116 (369)
T ss_dssp TTCSEEEECCTTCC--HHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEE-----------------
T ss_pred hCCCEEEECCCCcC--HHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCcee-----------------
Confidence 68999999987653 45677888888 7899999999999999999999999999999876
Q ss_pred cccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 210 VYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 210 ~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+++.+++.++++++|||+||||..|+ ||+|+++|+|.+|+.++++.+. +.+++||+|+++++|++|+++
T Consensus 117 ------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~~g~e~sv~~~ 186 (369)
T 3aw8_A 117 ------VDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALG----GRGLILEGFVPFDREVSLLAV 186 (369)
T ss_dssp ------ESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTTC----SSSEEEEECCCCSEEEEEEEE
T ss_pred ------eCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC----CCcEEEEEcCCCCEEEEEEEE
Confidence 77899999999999999999999999 9999999999999999887652 568999999996699999999
Q ss_pred EcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccC
Q 000092 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL 368 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRl 368 (2267)
+|++|+++.+ ...+..++.+++.....|++.++++..+++.+.+.++++++||+|++++||+++ .+++||||+|||+
T Consensus 187 ~d~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~--~~~~~viEiN~R~ 263 (369)
T 3aw8_A 187 RGRTGEVAFY-PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQV--GEELLFNEMAPRV 263 (369)
T ss_dssp ECTTSCEEEC-CCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSC
T ss_pred ECCCCCEEEE-CCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEEeCCc
Confidence 9988888764 444556666666667789887889999999999999999999999999999999 3789999999999
Q ss_pred cCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEcc
Q 000092 369 QVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTS 448 (2267)
Q Consensus 369 qgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~a 448 (2267)
++++..+++.+|+|+...+++.++|.+++.+ ...++++.+++++
T Consensus 264 ~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~------------------------------------~~~~~~~~~~~~~ 307 (369)
T 3aw8_A 264 HNSGHWTIEGAETSQFENHLRAVLGLPLGST------------------------------------APRGQSAMVNLIG 307 (369)
T ss_dssp CGGGTTHHHHBSSCHHHHHHHHHHTCCCCCC------------------------------------CBCSEEEEEEEES
T ss_pred CCccceeeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccccEEEEEEeC
Confidence 9988888889999999999999999988631 1235688899998
Q ss_pred CCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 449 EDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 449 Edp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
++| + +.. +...|++... +. |..++ ....+|||+++|+|+++|++++.++++.+.
T Consensus 308 ~~~--------~-~~~--~~~~p~~~~~--~~-g~~~~--~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 308 EKP--------P-FAE--VLKVEGAHLH--WY-GKAVR--PGRKVGHITLRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp CCC--------C-HHH--HHTSTTEEEE--EC-CCCCC--TTCEEEEEEEEESSHHHHHHHHHHHHTTSS
T ss_pred CCc--------h-HHH--hccCCCcEEE--Ee-cCCCC--CCCeEEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 762 1 222 1223454221 11 22222 236799999999999999999999999876
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=405.25 Aligned_cols=372 Identities=20% Similarity=0.230 Sum_probs=297.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+.+||||+|+|+.+.+++++++++||+++ +. |.++++++.++||+++.. +|.|.+.|.++
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~~ 93 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVA-----------VL--DPDPASPAGAVADRHLRA-------AYDDEAALAEL 93 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--CSCTTCHHHHHSSEEECC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--CCCCcCchhhhCCEEEEC-------CcCCHHHHHHH
Confidence 45799999999999999999999999985 44 667889999999998865 57899999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|+ ++|+|+++ +...+..+.+.|++. .++||++++++.++||..+|++++++|||+|+|..
T Consensus 94 a~--~~D~V~~~--~e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 153 (419)
T 4e4t_A 94 AG--LCEAVSTE--FENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVV-------------- 153 (419)
T ss_dssp HH--HCSEEEEC--CTTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred Hh--cCCEEEEc--cCcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEE--------------
Confidence 94 68999966 445555677888877 48899999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHHhh----hCCcEEEeec-CCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 207 PDDVYRQACVYTTEEAIASCQV----VGYPAMIKAS-WGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~----IGyPVVIKPs-~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
+++.+++.+++++ + ||+||||. .|+||+|+++|+|.+|+.++++.+ .+.+++||+|+++++
T Consensus 154 ---------v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~ 219 (419)
T 4e4t_A 154 ---------IESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKY 219 (419)
T ss_dssp ---------ECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEE
T ss_pred ---------ECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCe
Confidence 7889999988888 9 99999999 889999999999999999999875 357899999999889
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccc-eEEE--ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQ-KIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~q-Kiie--eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
|++|.+++|.+|+++.+.. ++++|+ .+.. ..|++.++++..+++++.+.++++++||+|+++|||++++ +|+
T Consensus 220 Eisv~v~~~~~G~~~~~~~----~e~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~ 294 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPL----AQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGS 294 (419)
T ss_dssp EEEEEEEECTTSCEEECCC----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCC
T ss_pred EEEEEEEEcCCCCEEEEeC----eEEEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCC
Confidence 9999999999998877642 333333 3443 5688778999999999999999999999999999999984 678
Q ss_pred EEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCc
Q 000092 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPK 438 (2267)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~ 438 (2267)
+||+|||||+++++++++..+|+|+++++++.++|.|++.+ . ..
T Consensus 295 ~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~ra~~G~pl~~~---------------------------------~---~~ 338 (419)
T 4e4t_A 295 FVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNP---------------------------------R---QH 338 (419)
T ss_dssp EEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCC---------------------------------C---BC
T ss_pred EEEEEEeCCCCCCCCeEeeccCCCHHHHHHHHHcCCCCCCc---------------------------------c---cc
Confidence 99999999999999999999999999999999999998631 0 01
Q ss_pred eEEEEEEEccCC-CCCC--CCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhc
Q 000092 439 GHCVAVRVTSED-PDDG--FKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLK 515 (2267)
Q Consensus 439 Ghai~aRI~aEd-p~~~--F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~ 515 (2267)
..++.+.+..+. +... -.+....+.. +-..|++.+...-++.. .-...+|||.+.|+|.++|++++..+.+
T Consensus 339 ~~~~m~n~lg~~~~~~~~~~~~~~~~~~~--~l~~p~~~~~~ygk~~~----~~~rkmGhv~~~~~~~~~~~~~a~~~~~ 412 (419)
T 4e4t_A 339 SPAAMLNILGDVWFPNGAAAGAVTPPWDT--VAAMPAAHLHLYGKEEA----RVGRKMGHVNFTAEMRDDAVAAATACAQ 412 (419)
T ss_dssp SCEEEEEEEGGGGCTTCGGGCCCCCCHHH--HHTSTTEEEEECCCSCC----CTTCEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccccccccccchHHHH--HHhCCCCEEEECCCCCC----CCCCceEEEEEEeCCHHHHHHHHHHHHH
Confidence 124445555431 1000 0011111111 22345665443322211 1123489999999999999999999988
Q ss_pred ceEE
Q 000092 516 EIQI 519 (2267)
Q Consensus 516 el~I 519 (2267)
.+.|
T Consensus 413 ~l~~ 416 (419)
T 4e4t_A 413 LLRV 416 (419)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 7755
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=399.63 Aligned_cols=371 Identities=14% Similarity=0.141 Sum_probs=300.2
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhcc--EEEEccCCCCCCCccCHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIAD--QFVEVPGGTNNNNYANVQLIV 124 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~AD--e~v~vp~~~~~~~Y~dvd~Il 124 (2267)
+.+||||+|+|+.+.+++++++++|++++ ++ | .++++..++|| ..+.. +|.|.+.|.
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~-----------~~--d-~~~~p~~~~ad~~~~~~~-------~~~d~~~l~ 81 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVN-----------VL--D-ADNSPAKQISAHDGHVTG-------SFKEREAVR 81 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEE-----------EE--E-STTCTTGGGCCSSCCEES-------CTTCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--E-CCCCcHHHhccccceeec-------CCCCHHHHH
Confidence 46899999999999999999999999985 44 4 47788899999 44433 688999999
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccc
Q 000092 125 EMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLV 204 (2267)
Q Consensus 125 ~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~ 204 (2267)
+++++ +|+|.+++.+. +..+.+.|++ |+. +||++++++.+.||..+|++++++|||+|||..
T Consensus 82 ~~a~~--~d~i~~e~e~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~------------ 143 (403)
T 3k5i_A 82 QLAKT--CDVVTAEIEHV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRE------------ 143 (403)
T ss_dssp HHHTT--CSEEEESSSCS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEE------------
T ss_pred HHHHh--CCEEEECCCCC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEE------------
Confidence 99986 69998775544 4456788888 987 899999999999999999999999999999876
Q ss_pred ccCcccccccccC--CHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 205 TIPDDVYRQACVY--TTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 205 ~v~~~~~~~~~V~--s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
+. +.+++.++++++|||+||||..|+ ||+|+++|++.+|+.++++.+. +.+++||+|+++++
T Consensus 144 -----------~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~lvEe~i~~~~ 208 (403)
T 3k5i_A 144 -----------LVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK----DRPLYAEKWAYFKM 208 (403)
T ss_dssp -----------ESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTT----TSCEEEEECCCEEE
T ss_pred -----------EcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcC----CCcEEEecCCCCCe
Confidence 55 899999999999999999999998 9999999999999999998753 56899999999779
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 361 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yf 361 (2267)
|++|.+++|..| +..++..+.+++.+.+.....|++.++++..+++.+.+.++++++||+|.++|||++++ +|++||
T Consensus 209 E~sv~v~~~~~g--~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~~~v 285 (403)
T 3k5i_A 209 ELAVIVVKTKDE--VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLE-DDSIML 285 (403)
T ss_dssp EEEEEEEECSSC--EEECCCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSCEEE
T ss_pred EEEEEEEEcCCC--EEEeCCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCcEEE
Confidence 999999999888 55677778888888877778898878999999999999999999999999999999984 678999
Q ss_pred eeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEE
Q 000092 362 LELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHC 441 (2267)
Q Consensus 362 LEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Gha 441 (2267)
+|+|||++++..++...+|+|+.+++++.++|.|++.. .....+++
T Consensus 286 ~EiNpR~~~sg~~~~~~~~~s~~~~~~ra~~G~pl~~~----------------------------------~~~~~~~a 331 (403)
T 3k5i_A 286 CEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQ----------------------------------SLEIRQPS 331 (403)
T ss_dssp EEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCGG----------------------------------GGSBSSCE
T ss_pred EEeecCCCCCCceeeeecCCCHHHHHHHHHcCCCCCcc----------------------------------cccCCCcE
Confidence 99999999864444456899999999999999998631 01123457
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 442 VAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 442 i~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+.+.+..++.. .+....+.. +-..|++.+...-++..+ -...+|||.+.|+|.++|++++.++++.+
T Consensus 332 ~m~nilg~~~~---~~~~~~~~~--~~~~p~~~~~~ygk~~~~----~~rkmGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 332 IMLNIIGGAAP---DTHLQAAEC--ALSIPNASIHLYSKGAAK----PGRKMGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp EEEEEECCSSS---SHHHHHHHH--HTTSTTEEEEECCCCSCC----TTCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCcc---ccchhHHHH--HhcCCCCEEEECCCCCCC----CCCeeEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 77777775421 010001111 223466644432221111 12458999999999999999999998765
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=385.44 Aligned_cols=368 Identities=15% Similarity=0.177 Sum_probs=284.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
|+||||+|+|..+..++++++++|++++ ++ |.+++.+..+++|+++.+ +|.|.+.+.+++
T Consensus 1 M~~Ililg~g~~g~~~~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~-------~~~d~~~l~~~~ 60 (380)
T 3ax6_A 1 MKKIGIIGGGQLGKMMTLEAKKMGFYVI-----------VL--DPTPRSPAGQVADEQIVA-------GFFDSERIEDLV 60 (380)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTGGGSSEEEEC-------CTTCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--eCCCCCchhhhCceEEEC-------CCCCHHHHHHHH
Confidence 5899999999999999999999999875 34 333455667899998876 357789999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.++|+|+++++... ..+.+.|++.|++ +||+++++..++||..++++++++|||+|+|..
T Consensus 61 --~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~--------------- 120 (380)
T 3ax6_A 61 --KGSDVTTYDLEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKL--------------- 120 (380)
T ss_dssp --HTCSEEEESCSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred --hcCCEEEecccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE---------------
Confidence 57999999876543 3456788889998 689999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+++.++ +++++|||+||||..|+ ||+|+++|++.+|+.++++ .+++||+|+++++|++|.
T Consensus 121 --------~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~--------~~~lvEe~i~~g~e~sv~ 181 (380)
T 3ax6_A 121 --------VKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK--------GETYLEEFVEIEKELAVM 181 (380)
T ss_dssp --------CSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC--------SSEEEEECCCEEEEEEEE
T ss_pred --------eCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc--------CCEEEEeccCCCeeEEEE
Confidence 567766 66789999999999999 9999999999999877654 589999999966899999
Q ss_pred EEEcCCCCEEEeccccccc--ccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 287 LLCDQYGNVAALHSRDCSV--QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdcsv--qrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
+++|++|++..+... +.. ++.+.......|+. ++++..+++.+.+.++++++||.|.+++||++++ +|++||+|+
T Consensus 182 ~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~~~viEi 258 (380)
T 3ax6_A 182 VARNEKGEIACYPVV-EMYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGEILVNEI 258 (380)
T ss_dssp EEECSSCCEEEEEEE-EEC--------CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEE
T ss_pred EEECCCCCEEEECCe-eeeecccCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 999988887654322 222 33333333456877 8899999999999999999999999999999994 678999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~a 444 (2267)
|||+++++..+.+.+|+|+...+++.++|.+++..+ . .++++.+
T Consensus 259 N~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~----------------------------------~--~~~~~~~ 302 (380)
T 3ax6_A 259 APRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTE----------------------------------L--LIPAVMV 302 (380)
T ss_dssp ESSCCGGGTHHHHHBSSCHHHHHHHHHTTCCCCCCC----------------------------------B--CSCEEEE
T ss_pred cCCCCCCceeehhhccccHHHHHHHHHhCCCCCCcc----------------------------------c--cCceEEE
Confidence 999999888888899999999999999999886310 0 1224567
Q ss_pred EEccCCCCCCCCC-CCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 445 RVTSEDPDDGFKP-TSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 445 RI~aEdp~~~F~P-s~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
++.+++...+..+ ..| +..+ ..|++.++. .|.... .....+|||++.|+|+++|++++.++++.+.++-
T Consensus 303 ~~l~~~~~~~~~~~~~~-~~~~---~~p~~~~~~---~g~~~~-~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 372 (380)
T 3ax6_A 303 NLLGEEGYYGKPALIGL-EEAL---AIEGLSLHF---YGKKET-RPYRKMGHFTVVDRDVERALEKALRAKKILKVVS 372 (380)
T ss_dssp EEEBCTTCCBSEEEESH-HHHH---TSTTEEEEE---CCCSCB-CBTCEEEEEEEECSSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecccccccccccchh-HHHh---cCCCCEEEe---cCCCCC-CCCCeeEEEEEEeCCHHHHHHHHHHHHhhhhhhc
Confidence 7777653211112 233 4443 335654433 122221 2345699999999999999999999999999875
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=383.94 Aligned_cols=376 Identities=18% Similarity=0.232 Sum_probs=285.0
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....+++++ +++|++++ + +.+. +......+| .+.+ +|.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~~~~-------~~~d~~~l~~~~~ 59 (424)
T 2yw2_A 2 KVLVVGNGGREHAIAWKVAQSPLVKEL---------Y-VAKG----NAGIWEIAK-RVDI-------SPTDVEKLAEFAK 59 (424)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CTTGGGTSE-EECS-------CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhhCCCCCEE---------E-EECC----Ccchhhhcc-cccC-------CcCCHHHHHHHHH
Confidence 799999995444444443 56787764 1 2221 333445565 3322 5678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|+||.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (424)
T 2yw2_A 60 NEGVDFTIVGPEAPL-VEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEV---------------- 122 (424)
T ss_dssp HHTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999843211 124678888999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhie 284 (2267)
+++.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (424)
T 2yw2_A 123 -------FTDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEAS 194 (424)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEE
Confidence 778999999999999999999999999999999999999999999887532 1368999999996 7999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHH-HHHHHHHHHHc-----Cceeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAA 346 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL-~~~A~rla~aL-----Gy~Ga~ 346 (2267)
|.++.| |+.+... ..+++|+++.+ ..|++.+++++.+++ ++.+.++++++ +|.|++
T Consensus 195 v~~~~~--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (424)
T 2yw2_A 195 YIVMIN--GDRYVPL----PTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFL 268 (424)
T ss_dssp EEEEEE--TTEEEEC----CCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEEc--CCEEEee----cceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 999986 4544432 34566666653 267766889888888 46787777765 889999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2267)
++||++++ +| +||+|+|||+++.. ...+..+|+|+++++++++.|. ++.+
T Consensus 269 ~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~-------------------------- 319 (424)
T 2yw2_A 269 YAGLMITK-EG-PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHI-------------------------- 319 (424)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCC--------------------------
T ss_pred EEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcc--------------------------
Confidence 99999994 44 99999999998553 3345568999999999999985 3310
Q ss_pred CCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccc-cCCCcEEEEEeeeeCCcc----cccCCcccEEEEEE
Q 000092 426 PFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSF-KSKPNVWAYFSVKSGGGI----HEFSDSQFGHVFAF 499 (2267)
Q Consensus 426 ~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~-i~~l~~-~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~via~ 499 (2267)
. ...+|++.++++++++.. .|..|. +..+.. ...|+++++. .|..+ .......+|||+++
T Consensus 320 ~---------~~~~~a~~~~~~~~g~~~--~~~~g~~i~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~r~~~v~~~ 385 (424)
T 2yw2_A 320 K---------EDERYALDVVLASRGYPE--KPETGKIIHGLDYLKSMEDVVVFH---AGTKKEGNFTVTSGGRVLNVCAY 385 (424)
T ss_dssp C---------BCSSEEEEEEEECTTTTS--SCCCCCBCBCHHHHHTSTTEEEEE---SSEEEETTEEEECSSEEEEEEEE
T ss_pred c---------ccCCcEEEEEEecCCCCC--CCCCCCcCcCcccccCCCCeEEEE---cceEeeCCEEEecCCcEEEEEEE
Confidence 0 113688999998875432 355565 554432 2246765432 23322 12234568999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000092 500 GESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2267)
|+|+++|++++.++++++.++|
T Consensus 386 g~~~~~a~~~~~~~~~~i~~~g 407 (424)
T 2yw2_A 386 GKTLKEAKERAYEAIRYVCFEG 407 (424)
T ss_dssp ESSHHHHHHHHHHHHTTCBCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999999
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=396.08 Aligned_cols=376 Identities=15% Similarity=0.130 Sum_probs=305.9
Q ss_pred eeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCC--CchHHHHHHcCCe
Q 000092 81 ILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEI--PELPDTLSTKGII 158 (2267)
Q Consensus 81 i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn--~~la~~l~~~GI~ 158 (2267)
+++|+++...|.++.+++++.||+.+.+++......+..++.|+++|+++++|+|+|+ +|+ ..+++.+++.|++
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi~ 127 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGLR 127 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTCC
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCCC
Confidence 6789999988888888899999999988665555566779999999999999999995 565 5688999999987
Q ss_pred EeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeec
Q 000092 159 FLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKAS 238 (2267)
Q Consensus 159 fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs 238 (2267)
||+++++..++||..++++++++|||+|||.. +++.+++.++++++|||+||||+
T Consensus 128 --g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~-----------------------v~s~ee~~~~~~~lg~PvVVKP~ 182 (474)
T 3vmm_A 128 --GAGVQAAENARDKNKMRDAFNKAGVKSIKNKR-----------------------VTTLEDFRAALEEIGTPLILKPT 182 (474)
T ss_dssp --CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEE-----------------------ECSHHHHHHHHHHSCSSEEEEES
T ss_pred --CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999865 78899999999999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHhh----------CCCCcEEEEEeccccce-----------eeEE-EEEcCCCCEE
Q 000092 239 WGGGGKGIRKVHNDDEVRALFKQVQGE----------VPGSPIFIMKVASQSRH-----------LEVQ-LLCDQYGNVA 296 (2267)
Q Consensus 239 ~GgGGkGIr~V~s~eEL~~a~~~~~~e----------~~~~~I~VEeyI~g~rh-----------ieVq-vl~D~~G~vi 296 (2267)
.|+||+|+++|++.+|+.++++.+..+ ..+.+++||+|++|.+| +++. ++.|+++.++
T Consensus 183 ~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v 262 (474)
T 3vmm_A 183 YLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPI 262 (474)
T ss_dssp SCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEE
T ss_pred CCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEE
Confidence 999999999999999999999988764 23578999999998764 7776 5677777778
Q ss_pred EecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeee-EEEEEEEccCCcEEEeeeCccCc--CCcc
Q 000092 297 ALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA-TVEYLYSMETGEYYFLELNPRLQ--VEHP 373 (2267)
Q Consensus 297 ~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~-tVEfl~d~~~g~~yfLEINpRlq--gehp 373 (2267)
.+..++|+.+ +++.++.+|++ ++++..++|.+.+.++++++||+|.+ |+||++++ +|++||||+|||++ .+|+
T Consensus 263 ~i~~~~~~~~--~~~~~~~~Pa~-l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg~~~~iEvNpR~~G~~~~~ 338 (474)
T 3vmm_A 263 AIHDKTPQIG--FTETSHITPSI-LDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARFAGWNMIP 338 (474)
T ss_dssp EEEEECCCBT--TBCCEEEESCC-CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GGEEEEEEEESSCCSTTHHH
T ss_pred EEEeeccCCC--ccceEEEECCC-CCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CCCEEEEEEeCCCCCCchHH
Confidence 8889999877 78888899995 89999999999999999999999888 59999995 67899999999999 5689
Q ss_pred eehhhhcCCHHHHHHHHHc-CCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCC
Q 000092 374 VTEWIAEINLPAAQVAVGM-GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPD 452 (2267)
Q Consensus 374 vtE~vtGvDL~~~qL~iA~-G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~ 452 (2267)
++++++|+|++++++++++ |.+++..+ . ......+++.+|++.++.+.
T Consensus 339 ~~~~~tG~dl~~~~i~~a~~G~~l~~~~----------------------~---------~~~~~~~~~~~~~~~p~~~~ 387 (474)
T 3vmm_A 339 NIKKVFGLDMAQLLLDVLCFGKDADLPD----------------------G---------LLDQEPYYVADCHLYPQHFK 387 (474)
T ss_dssp HHHHHHCCCHHHHHHHHHHHGGGSCCCS----------------------S---------CCCCCSSEEEEEEECHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCCc----------------------c---------cccCCCceeEEEEEeccccc
Confidence 9999999999999999999 99886321 0 11123477778888776543
Q ss_pred C-CCCC-CCC--ccccccccCCC----cEEEEEe-eeeC----CcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceEE
Q 000092 453 D-GFKP-TSG--KVQELSFKSKP----NVWAYFS-VKSG----GGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQI 519 (2267)
Q Consensus 453 ~-~F~P-s~G--~i~~l~~~s~~----~V~~~~~-v~~G----~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~I 519 (2267)
. +-.| ..+ .|..+..|.+- .+.+..+ ...| -.+-.-|||.++-++ .|+++++..+.++..|+..++
T Consensus 388 ~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (474)
T 3vmm_A 388 QNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFEL-KGSNSQDVAESIRQIQQHAKL 466 (474)
T ss_dssp HTTSSCTTCEEEEEEEEECCTTCCCTTCEEEEEEECCTTEEECTTSCGGGCCCEEEEE-EESCHHHHHHHHHHHHHHCEE
T ss_pred cccccCCcccceeecceecccceecccceEeeccCCCCCceEEEEeehhccCceeEEe-ccccHHHHHHHHHHHHHhhhh
Confidence 2 1122 222 24444444321 2222221 1112 234456899988887 999999999999999999888
Q ss_pred ec
Q 000092 520 RG 521 (2267)
Q Consensus 520 ~G 521 (2267)
..
T Consensus 467 ~~ 468 (474)
T 3vmm_A 467 TA 468 (474)
T ss_dssp EE
T ss_pred hh
Confidence 65
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=378.37 Aligned_cols=374 Identities=17% Similarity=0.254 Sum_probs=284.2
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....+++++ +++|++++ ++.+. +......++ . ++ +|.|.+.|+++|+
T Consensus 2 kililG~g~r~~a~a~~l~~~~g~~~v----------~~~~~----~~~~~~~~~-~--~~------~~~d~~~l~~~~~ 58 (417)
T 2ip4_A 2 KVLVVGSGGREHALLWKAAQSPRVKRL----------YAAPG----NAGMEALAE-L--VP------WNGDVEALADWAL 58 (417)
T ss_dssp EEEEEESSHHHHHHHHHHHTCSSCCEE----------EEEEC----CTTGGGTSE-E--CC------CCSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE----------EEECC----Ccchhhhcc-c--CC------CccCHHHHHHHHH
Confidence 799999996566666666 45787764 12221 222333344 3 32 4678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 59 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~---------------- 121 (417)
T 2ip4_A 59 AEGIDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRV---------------- 121 (417)
T ss_dssp HHTCCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEE----------------
T ss_pred HcCCCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeee----------------
Confidence 999999999854321 124678888899999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEE
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.....+.+++||+|++| +|++|.++
T Consensus 122 -------~~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~ 193 (417)
T 2ip4_A 122 -------FREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLAL 193 (417)
T ss_dssp -------ESSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEE
T ss_pred -------eCCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEE
Confidence 7789999999999999999999999999999999999999999988863333578999999986 79999999
Q ss_pred EcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHH-HHHHHHHHHHc-----CceeeeEEEE
Q 000092 289 CDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVGAATVEY 350 (2267)
Q Consensus 289 ~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL-~~~A~rla~aL-----Gy~Ga~tVEf 350 (2267)
.| |+.+..+ .++++|++..+ ..|++ +++++.+++ ++.+.++++++ +|.|++++||
T Consensus 194 ~~--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~ 266 (417)
T 2ip4_A 194 TD--GETILPL----LPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGL 266 (417)
T ss_dssp ES--SSCEEEC----CCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred Ee--CCEEEEc----chheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 86 4444332 23455555432 36777 888888888 66787888775 8899999999
Q ss_pred EEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCc
Q 000092 351 LYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDF 429 (2267)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~ 429 (2267)
++++ +| +||+|+|||+++.. ...+..+|+|+++++++++.|. ++. ..+.|
T Consensus 267 ~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~------------------------~~~~~-- 317 (417)
T 2ip4_A 267 MLTR-EG-PKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAG------------------------TRLSW-- 317 (417)
T ss_dssp EECS-SC-EEEEEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGG------------------------CCCCB--
T ss_pred EEeC-CC-eEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCc------------------------CCccc--
Confidence 9984 55 99999999998653 2344568999999999999985 321 01111
Q ss_pred cccCCCCCceEEEEEEEccCCCCCCCCCCCCc-cccccccCCCcEEEEEeeeeCCccc----ccCCcccEEEEEEeCCHH
Q 000092 430 DQAESTRPKGHCVAVRVTSEDPDDGFKPTSGK-VQELSFKSKPNVWAYFSVKSGGGIH----EFSDSQFGHVFAFGESRA 504 (2267)
Q Consensus 430 ~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~-i~~l~~~s~~~V~~~~~v~~G~~i~----~~~Ds~~g~via~G~~re 504 (2267)
..++++.+++.++++.. .|..|. |..+... |+++++. .|..+. .....++|||+++|+|++
T Consensus 318 -------~~~~~~~~~l~~~~~~~--~~~~g~~i~~~~~~--~~v~~~~---~g~~~~~~~~~~~~~rv~~v~~~g~~~~ 383 (417)
T 2ip4_A 318 -------KEGAAACVVLAAPGYPE--SPRKGIPLHVPEPP--EGVLVFH---AGTRREGGRLVSAGGRVLNVVGLGRDLK 383 (417)
T ss_dssp -------CSSEEEEEEEECTTTTT--SCCCCCBCBCCCCC--TTEEEEE---SSEEESSSSEEECSSEEEEEEEEESSHH
T ss_pred -------cCCcEEEEEEeCCCCCC--CCCCCCcccccCCC--CCeEEEE---CceEeeCCeEEecCCcEEEEEEEcCCHH
Confidence 12688999998876432 466776 6555432 6765442 333321 122345899999999999
Q ss_pred HHHHHHHHhhcceEEec
Q 000092 505 LAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 505 eA~~~l~~AL~el~I~G 521 (2267)
+|++++.++++.+.++|
T Consensus 384 ~a~~~~~~~~~~i~~~~ 400 (417)
T 2ip4_A 384 EALERAYAYIPQVGFPG 400 (417)
T ss_dssp HHHHHHHHHGGGSBCTT
T ss_pred HHHHHHHHHHhcCccCC
Confidence 99999999999999998
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=375.00 Aligned_cols=337 Identities=14% Similarity=0.118 Sum_probs=268.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
||||+|+|+|+.+.+++.+++++||+++ .. | ++++. +.+ +
T Consensus 1 Mk~igilGgGqlg~m~~~aa~~lG~~v~-----------~~--~--~~a~~-------~~~----------~-------- 40 (355)
T 3eth_A 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVW-----------PV--G--LDAEP-------AAV----------P-------- 40 (355)
T ss_dssp CCEEEEESCSHHHHHHHHHHGGGTCEEE-----------EE--C--TTCCG-------GGC----------C--------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-----------CC--C--CCCCc-------eEE----------c--------
Confidence 6889999999999999999999999874 22 2 33332 011 1
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
.++|+|+|++++.+.+ +.+.|++.| ++||+++++..++||..+|++++++|||+|||..
T Consensus 41 --l~~d~it~e~e~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~--------------- 99 (355)
T 3eth_A 41 --FQQSVITAEIERWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQL--------------- 99 (355)
T ss_dssp --CTTSEEEESCSCCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred --ccCCEEEECcCCcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEE---------------
Confidence 1899999999988754 788898887 7899999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCC-CCCcCeEEECC--HHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-GGGKGIRKVHN--DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-gGGkGIr~V~s--~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie 284 (2267)
+++.+++.++++++|||+||||+.| +||+|+++|++ .+|+.+++ . + +++||+|+++++|++
T Consensus 100 --------v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~---~----~-~vivEe~I~~~~Eis 163 (355)
T 3eth_A 100 --------LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC---Y----G-ECIVEQGINFSGEVS 163 (355)
T ss_dssp --------ECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG---T----T-TEEEEECCCCSEEEE
T ss_pred --------ECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh---h----C-CEEEEEccCCCcEEE
Confidence 6788899999999999999999985 78999999999 99988743 1 2 699999999889999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
|.+++|.+|++.++... +.+++.+.......|+ .+++++.+++++.|.++++++||+|+++|||+++ ++++||+|+
T Consensus 164 v~v~~~~~G~~~~~p~~-e~~~~~g~~~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~--~~~~~v~Ei 239 (355)
T 3eth_A 164 LVGARGFDGSTVFYPLT-HNLHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINEL 239 (355)
T ss_dssp EEEEECTTSCEEECCCE-EEEEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEcCCCCEEEECCE-EEEeeCCeEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEe
Confidence 99999999998765332 3455555433334455 5899999999999999999999999999999999 578999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCCCccccCCCCCceEEEEE
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAV 444 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~a 444 (2267)
|||+++++++|+..+|+|+.+.+++.++|.|++.+ ...++++.+
T Consensus 240 npR~~~sg~~t~~~~~~s~fe~~~ra~~G~pl~~~------------------------------------~~~~~~~m~ 283 (355)
T 3eth_A 240 APRVHNSGHWTQNGASISQFELHLRAITDLPLPQP------------------------------------VVNNPSVMI 283 (355)
T ss_dssp ESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCCCC------------------------------------CCCSCEEEE
T ss_pred eCCCCCCccEEeeeecCCHHHHHHHHHcCCCCCCc------------------------------------cccCceEEE
Confidence 99999999999999999999999999999998631 112346666
Q ss_pred EEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcceE
Q 000092 445 RVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQ 518 (2267)
Q Consensus 445 RI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el~ 518 (2267)
.|..++ + ... +-..|++.+.+. |... .-...+|||.+.|+|.++|++++..+.+.+.
T Consensus 284 nilg~~---------~-~~~--~~~~p~~~~~~y---gk~~--r~~rkmGhv~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 284 NLIGSD---------V-NYD--WLKLPLVHLHWY---DKEV--RPGRKVGHLNLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EEESCC---------C-CGG--GGGSTTCEEEEC---CCCC--CTTCEEEEEEEECSCHHHHHHHHHHHGGGSC
T ss_pred EEecch---------H-HHH--HHhCCCCEEEEc---CCCC--CCCCeeEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 776653 1 111 122344433321 1111 1234599999999999999999999888753
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=384.71 Aligned_cols=382 Identities=16% Similarity=0.220 Sum_probs=279.9
Q ss_pred CccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
|.+||||+|+|.....+++.+ +++|++++ ++ .+ + ...+. ..++ ...++. +|.|.+.|++
T Consensus 23 m~~~IlIlG~g~r~~al~~~~a~~~g~~~v---------~~-~~-~--~~~~~-~~~~-~~~~~~-----~~~d~~~l~~ 82 (452)
T 2qk4_A 23 MAARVLIIGSGGREHTLAWKLAQSHHVKQV---------LV-AP-G--NAGTA-CSEK-ISNTAI-----SISDHTALAQ 82 (452)
T ss_dssp CSEEEEEEECSHHHHHHHHHHTTCTTEEEE---------EE-EE-C--CGGGS-BSSS-EEECCC-----CSSCHHHHHH
T ss_pred cCcEEEEECCCHHHHHHHHHHHhcCCCCEE---------EE-EC-C--Chhhh-hhcc-cccccc-----CCCCHHHHHH
Confidence 568999999997655555554 56676643 22 22 1 22222 3344 333432 5788999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|++.++|+|+|+.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 83 ~~~~~~~d~V~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 148 (452)
T 2qk4_A 83 FCKEKKIEFVVVGPEAPL-AAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKA------------- 148 (452)
T ss_dssp HHHHHTCCEEEECSSHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHHcCCCEEEECCcHHH-HHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 999999999999843211 125678888899999999999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEecccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQS 280 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~ 280 (2267)
+++.+++.++++++||| +||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++|
T Consensus 149 ----------~~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G- 217 (452)
T 2qk4_A 149 ----------FTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG- 217 (452)
T ss_dssp ----------ESSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-
T ss_pred ----------ECCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-
Confidence 77899999999999999 9999999999999999999999999998876421 1468999999995
Q ss_pred ceeeEEEEEcCCCC-EEEecccccccccccceEE------------EecCCCCCCHHHHHHHH-HHHHHHHHHc-----C
Q 000092 281 RHLEVQLLCDQYGN-VAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLE-QAARRLAKCV-----N 341 (2267)
Q Consensus 281 rhieVqvl~D~~G~-vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL~-~~A~rla~aL-----G 341 (2267)
+|++|.++.| |+ ++.+. .++++++.. ...|++.+++++.+++. +.+.++++++ +
T Consensus 218 ~E~sv~~~~d--G~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~ 290 (452)
T 2qk4_A 218 EEVSCLCFTD--GKTVAPMP-----PAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTP 290 (452)
T ss_dssp EEEEEEEEEC--SSCEEECC-----CBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCC
T ss_pred CeEEEEEEEC--CCEEEEcc-----eeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999986 44 44432 233444432 23677768888888886 6777777765 6
Q ss_pred ceeeeEEEEEEEccCCcEEEeeeCccCcCCcc-eehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccc
Q 000092 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEHP-VTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKT 420 (2267)
Q Consensus 342 y~Ga~tVEfl~d~~~g~~yfLEINpRlqgehp-vtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~ 420 (2267)
|+|++++||++++ +| +||+|+|||+++... .....+|+|+++++++++.|. ++..
T Consensus 291 ~~G~~~ve~~~~~-~g-~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~--------------------- 346 (452)
T 2qk4_A 291 YTGILYAGIMLTK-NG-PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCTS--------------------- 346 (452)
T ss_dssp CCEEEEEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGGG---------------------
T ss_pred ceeEEEEEEEEeC-CC-cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcc---------------------
Confidence 7899999999993 45 999999999996542 244567999999999999885 3310
Q ss_pred cccccCCCccccCCCCCceE-EEEEEEccCCCCCCCCCCCC-ccccccccCCCcEEEEEeeeeCCccc----ccCCcccE
Q 000092 421 SVIATPFDFDQAESTRPKGH-CVAVRVTSEDPDDGFKPTSG-KVQELSFKSKPNVWAYFSVKSGGGIH----EFSDSQFG 494 (2267)
Q Consensus 421 ~~~~i~f~~~~~~~~~~~Gh-ai~aRI~aEdp~~~F~Ps~G-~i~~l~~~s~~~V~~~~~v~~G~~i~----~~~Ds~~g 494 (2267)
.+.| ..++ ++.++++++++.. .|..| .|..+.....|+++++. .|..+. ......+|
T Consensus 347 ---~~~~---------~~~~~a~~~~l~~~g~~~--~~~~g~~i~~l~~~~~~~v~~~~---~G~~~~~~~~~~~~~rv~ 409 (452)
T 2qk4_A 347 ---LPVW---------LENHTALTVVMASKGYPG--DYTKGVEITGFPEAQALGLEVFH---AGTALKNGKVVTHGGRVL 409 (452)
T ss_dssp ---CCCB---------CTTCEEEEEEEECTTTTS--SCCCSCBCBCHHHHHHTTCEEEE---SSEEEETTEEEECSSEEE
T ss_pred ---ccee---------cCCCcEEEEEEECCCCCC--CCCCCCcccCccccCCCCcEEEE---CcEEeeCCeEEecCCeEE
Confidence 0111 1244 8899999876433 45667 46555322335665432 333321 12345579
Q ss_pred EEEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 495 HVFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 495 ~via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
||+++|+|+++|++++.++++.+.++|
T Consensus 410 ~v~~~g~~~~~a~~~~~~~~~~i~~~g 436 (452)
T 2qk4_A 410 AVTAIRENLISALEEAKKGLAAIKFEG 436 (452)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHCBCTT
T ss_pred EEEEecCCHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999998
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=373.58 Aligned_cols=296 Identities=19% Similarity=0.212 Sum_probs=256.0
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+.+||+|+|+|.++..++++++++|++++ ++ |.++++++.++||+.+.. +|.|.+.+.++
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi-----------~~--d~~~~~~~~~~ad~~~~~-------~~~d~~~l~~~ 72 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIA-----------VL--DPTKNSPCAQVADIEIVA-------SYDDLKAIQHL 72 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESSTTCTTTTTCSEEEEC-------CTTCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE-----------EE--eCCCCCchHHhCCceEec-------CcCCHHHHHHH
Confidence 34799999999999999999999999986 44 556778889999998875 67889999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
+++ +|+|.+++ ...+..+.+.|++.|+ +||+++++..+.||..++++++++|||+|+|..
T Consensus 73 ~~~--~dvI~~~~--e~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 132 (389)
T 3q2o_A 73 AEI--SDVVTYEF--ENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRL-------------- 132 (389)
T ss_dssp HHT--CSEEEESC--CCCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEE--------------
T ss_pred HHh--CCEeeecc--ccccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE--------------
Confidence 976 68887654 4455567788888885 899999999999999999999999999999876
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCC-CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeE
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGG-GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEV 285 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgG-GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieV 285 (2267)
+.+.+++.++++++|||+|+||+.|++ |+|+++|++.+|+.++++.+. +.+++||+|+++.+|++|
T Consensus 133 ---------~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~----~~~~lvEe~i~g~~E~~v 199 (389)
T 3q2o_A 133 ---------VQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN----AAECILEKWVPFEKEVSV 199 (389)
T ss_dssp ---------ESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH----HSCEEEEECCCCSEEEEE
T ss_pred ---------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCCEEEEecccCceEEEE
Confidence 788999999999999999999999975 899999999999999998764 458999999998899999
Q ss_pred EEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeC
Q 000092 286 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELN 365 (2267)
Q Consensus 286 qvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEIN 365 (2267)
.+++|.+|+++.+...++ +++.+.......|+. ++++..+++.+.+.++++++||+|+++|||++++ +|++||+|+|
T Consensus 200 ~~~~~~~G~~~~~~~~e~-~~~~g~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~~~viEiN 276 (389)
T 3q2o_A 200 IVIRSVSGETKVFPVAEN-IHVNNILHESIVPAR-ITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DGEIYINELA 276 (389)
T ss_dssp EEEECTTCCEEECCCEEE-EEETTEEEEEEESCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEE
T ss_pred EEEEcCCCCEEEecCeee-EEcCCceEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCCEEEEEee
Confidence 999998899877654432 233322223345665 8899999999999999999999999999999984 6789999999
Q ss_pred ccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 366 PRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 366 pRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
||++.+.+++..++|+|+.+.+++.++|.|++.
T Consensus 277 pR~~~s~~~~~~~~g~~~~~~~~r~~lg~~l~~ 309 (389)
T 3q2o_A 277 PRPHNSGHYTQDACETSQFGQHIRAICNLPLGE 309 (389)
T ss_dssp SSCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCC
T ss_pred CCCCCchhHHHHHcCCCHHHHHHHHHcCCCCCC
Confidence 999999888999999999999999999999863
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=367.77 Aligned_cols=294 Identities=15% Similarity=0.239 Sum_probs=248.2
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.+.+||||+|+|..+..++++++++|++++ ++ |.++++++.+.||+++.. +|.|.+.+.+
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~vi-----------v~--d~~~~~p~~~~ad~~~~~-------~~~d~~~l~~ 69 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVV-----------VL--DPSEDCPCRYVAHEFIQA-------KYDDEKALNQ 69 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEE-----------EE--ESCTTCTTGGGSSEEEEC-------CTTCHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-----------EE--ECCCCChhhhhCCEEEEC-------CCCCHHHHHH
Confidence 456899999999999999999999999986 44 556778899999998876 5788999999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
++++ +|+|.+++. .........+++.+ .++|++++++.+.||..++++++++|||+|||..
T Consensus 70 ~~~~--~dvi~~~~E--~~~~~~l~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~------------- 130 (377)
T 3orq_A 70 LGQK--CDVITYEFE--NISAQQLKLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFIS------------- 130 (377)
T ss_dssp HHHH--CSEEEESST--TSCHHHHHHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEE-------------
T ss_pred HHHh--CCcceeccc--ccCHHHHHHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEE-------------
Confidence 9987 688876642 22222455666665 5789999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCC-CCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGG-GGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~Gg-GGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie 284 (2267)
+.+.+++.++++++|||+|+||..|+ ||+|+++|++.+|+.++++.+. ..++++|+|+++.+|++
T Consensus 131 ----------~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~----~~~~ivEe~i~g~~E~s 196 (377)
T 3orq_A 131 ----------VKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE----TSECVAEKYLNIKKEVS 196 (377)
T ss_dssp ----------ECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT----TSCEEEEECCCEEEEEE
T ss_pred ----------ECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC----CCcEEEEccCCCCEEEE
Confidence 67778898999999999999999998 9999999999999999998875 36899999999889999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLEL 364 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEI 364 (2267)
|.++++.+|++..+...++ .++.+.......|+. +++ .+++.+.|.++++++||+|+++|||++++ +|++||+|+
T Consensus 197 v~~~~~~~g~~~~~~~~e~-~~~~g~~~~~~~Pa~-l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~v~Ei 271 (377)
T 3orq_A 197 LTVTRGNNNQITFFPLQEN-EHRNQILFKTIVPAR-IDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQLYVNEI 271 (377)
T ss_dssp EEEEECGGGCEEECCCEEE-EEETTEEEEEEESCS-SCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCCEEEEEE
T ss_pred EEEEEeCCCCEEEECCEeE-EEECCEEEEEECCCC-CCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEe
Confidence 9999888888877644432 222222223356775 555 78999999999999999999999999984 688999999
Q ss_pred CccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 365 NPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 365 NpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|||++++..+|...+++|+.+.+++.++|.|++
T Consensus 272 npR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl~ 304 (377)
T 3orq_A 272 APRPHNSGHYSIEACDYSQFDTHILAVTGQSLP 304 (377)
T ss_dssp ESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCC
T ss_pred eCCcCCCCcEeehhcCCCHHHHHHHHHcCCCCC
Confidence 999999888887889999999999999999986
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=370.19 Aligned_cols=370 Identities=18% Similarity=0.132 Sum_probs=274.2
Q ss_pred CccEEEEECchHHHHHHH-HHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFI-RSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iI-rsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
+.+||||+|+|..-..++ ..++++| +++ +++ +.+....+|+. + |.+.|++
T Consensus 14 ~~~~vlviG~Ggr~~a~a~~~a~~~g-~v~-----------~~~-----~np~~~~~d~~--i----------d~~~l~~ 64 (412)
T 1vkz_A 14 KAVRVHILGSGGREHAIGWAFAKQGY-EVH-----------FYP-----GNAGTKRDGTN--H----------PYEGEKT 64 (412)
T ss_dssp --CEEEEEECSHHHHHHHHHHHHTTC-EEE-----------EEE-----CCTTGGGTSEE--C----------CCCTHHH
T ss_pred ccCEEEEECCCHHHHHHHHHHHhCCC-CEE-----------EEC-----CChhhhccccc--C----------CHHHHHH
Confidence 345899999885444433 3457787 664 332 23566778876 2 3577999
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+|++.++|+|++| +|++.++..++..+. ++||+++++..++||..++++++++|||+|+|..
T Consensus 65 ~~~~~~~d~V~~~----~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~------------- 126 (412)
T 1vkz_A 65 LKAIPEEDIVIPG----SEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEV------------- 126 (412)
T ss_dssp HHTSCSSCEECCS----SGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------------
T ss_pred HHHHcCCCEEEEC----CcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEE-------------
Confidence 9999999999996 455556677777777 8899999999999999999999999999999865
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC--CC--CcEEEEEeccccc
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV--PG--SPIFIMKVASQSR 281 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~--~~--~~I~VEeyI~g~r 281 (2267)
+++.+++.++++++|||+||||+.|+||+|+++|+|.+|+.++++.+..+. .+ .+++||+|++| +
T Consensus 127 ----------~~~~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~ 195 (412)
T 1vkz_A 127 ----------AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-N 195 (412)
T ss_dssp ----------ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-E
T ss_pred ----------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-c
Confidence 778999999999999999999999999999999999999999999887542 12 38999999995 8
Q ss_pred eeeEEEEEcCCCCEEEecccccccccccc---e-----EEEecCCCCCCHHHHHHHHHHHHHHHHHc-----CceeeeEE
Q 000092 282 HLEVQLLCDQYGNVAALHSRDCSVQRRHQ---K-----IIEEGPITVAPLETVKKLEQAARRLAKCV-----NYVGAATV 348 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l~~Rdcsvqrr~q---K-----iieeaPa~~l~~e~~~eL~~~A~rla~aL-----Gy~Ga~tV 348 (2267)
|++|++++|+ +.+......+..++.+. + .....|++ +++++.+++.+.+.++++++ +|+|++++
T Consensus 196 E~sv~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~v 272 (412)
T 1vkz_A 196 ELSAMAVVNG--RNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYL 272 (412)
T ss_dssp EEEEEEEEET--TEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEEEEECC--CEEEEeeeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999974 43333332233333221 1 12457888 89999999999999999999 89999999
Q ss_pred EEEEEccCCcEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccccCC
Q 000092 349 EYLYSMETGEYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPF 427 (2267)
Q Consensus 349 Efl~d~~~g~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i~f 427 (2267)
||++++ +| +||||+|||+++. |+.++..+|+|+.+.++.++.|. ++.+ .+
T Consensus 273 e~~~~~-~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g~-l~~~--------------------------~~ 323 (412)
T 1vkz_A 273 GLMLHD-GD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG-KMEP--------------------------VE 323 (412)
T ss_dssp EEEEET-TE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTS-CCCC--------------------------CC
T ss_pred EEEEEC-CC-cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcCC-Cccc--------------------------cc
Confidence 999994 44 9999999999964 56677779999999999999884 3210 01
Q ss_pred CccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeee-eCCcccccCCcccEEEEEEeCCHHHH
Q 000092 428 DFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVK-SGGGIHEFSDSQFGHVFAFGESRALA 506 (2267)
Q Consensus 428 ~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~-~G~~i~~~~Ds~~g~via~G~~reeA 506 (2267)
..++++ +++.++++. .+.|..|.+..+..+. .++. .+.. .++.+.. ..+++|||+++|+|+++|
T Consensus 324 ---------~~~~a~-~~~l~~~~~-~~~~~~g~~i~l~~~~--~v~~-~g~~~~~~~~~~-~~~~vg~v~~~g~~~~ea 388 (412)
T 1vkz_A 324 ---------PRGFAV-DVVLAARGY-PDAPEKGKEITLPEEG--LIFF-AGVAEKDGKLVT-NGGRVLHCMGTGETKEEA 388 (412)
T ss_dssp ---------CCSEEE-EEEEECTTT-TTSCCCCCBCBCCSSC--CEEE-SSEEEETTEEEE-CSSEEEEEEEEESSHHHH
T ss_pred ---------cCCeEE-EEEEecCCC-CCCCCCCCEeeeCCCC--cEEE-CcccccCCeEEe-CCCcEEEEEEeCCCHHHH
Confidence 124665 455554321 2346667643333321 3432 1221 2232333 356799999999999999
Q ss_pred HHHHHHhhcceEEec
Q 000092 507 IANMVLGLKEIQIRG 521 (2267)
Q Consensus 507 ~~~l~~AL~el~I~G 521 (2267)
++++.++++.+.++|
T Consensus 389 ~~~~~~~~~~i~~~g 403 (412)
T 1vkz_A 389 RRKAYELAEKVHFEG 403 (412)
T ss_dssp HHHHHHHHHHCBCTT
T ss_pred HHHHHHHhcceeeCC
Confidence 999999999999998
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=364.21 Aligned_cols=374 Identities=19% Similarity=0.219 Sum_probs=270.5
Q ss_pred ccEEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
.+||||+|+|.....+++++ +++|++++ + +.+. +......+| . ++. ++.|.+.|+++
T Consensus 21 ~~~iliiG~g~r~~a~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~ 78 (451)
T 2yrx_A 21 HMNVLVIGRGGREHAIAWKAAQSPLVGKL---------Y-VAPG----NPGIADVAE-L--VHI-----DELDIEALVQF 78 (451)
T ss_dssp SEEEEEEECSHHHHHHHHHHHTCTTEEEE---------E-EEEC----CTTGGGTSE-E--CCC-----CTTCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEE---------E-EECC----ChhhhhhCc-e--ecc-----CCCCHHHHHHH
Confidence 36899999996555555544 56777653 2 2222 223344454 3 322 46789999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
|++.++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 79 ~~~~~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~-------------- 143 (451)
T 2yrx_A 79 AKQQAIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAA-------------- 143 (451)
T ss_dssp HHHTTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE--------------
T ss_pred HHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEE--------------
Confidence 99999999999854321 134678888899999999999999999999999999999999999875
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccce
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRH 282 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rh 282 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|
T Consensus 144 ---------~~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E 213 (451)
T 2yrx_A 144 ---------FTSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EE 213 (451)
T ss_dssp ---------ESCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EE
T ss_pred ---------ECCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cE
Confidence 778999999999999999999999999999999999999999998876532 2468999999996 79
Q ss_pred eeEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHH-HHHHHHHHHHc-----Ccee
Q 000092 283 LEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKL-EQAARRLAKCV-----NYVG 344 (2267)
Q Consensus 283 ieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL-~~~A~rla~aL-----Gy~G 344 (2267)
++|.++.| |+.+... ...++++++.+ ..|++.+++++.+++ ++.+.++++++ +|.|
T Consensus 214 ~sv~~~~d--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G 287 (451)
T 2yrx_A 214 FSFMAFVN--GEKVYPL----AIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLG 287 (451)
T ss_dssp EEEEEEEE--TTEEEEC----CCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEEEEEc--CCEEEEe----eeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 99999986 4544332 22344444432 357766888888888 66777777765 7889
Q ss_pred eeEEEEEEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccc
Q 000092 345 AATVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVI 423 (2267)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~ 423 (2267)
++++||++++ +| +||||+|||+++.. ...+..+|+|+++++++++.|.+.+ +
T Consensus 288 ~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~~~-~------------------------ 340 (451)
T 2yrx_A 288 VLYAGLMATA-NG-PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKELE-L------------------------ 340 (451)
T ss_dssp EEEEEEEEET-TE-EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCCCC-C------------------------
T ss_pred EEEEEEEEeC-CC-cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCCCC-c------------------------
Confidence 9999999994 44 99999999998764 3455678999999999999985431 0
Q ss_pred ccCCCccccCCCCCceEEEEEEE----ccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcc----cccCCcccEE
Q 000092 424 ATPFDFDQAESTRPKGHCVAVRV----TSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGI----HEFSDSQFGH 495 (2267)
Q Consensus 424 ~i~f~~~~~~~~~~~Ghai~aRI----~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i----~~~~Ds~~g~ 495 (2267)
.+ ..++++...+ ++++|..++. ..| +.++ . |++.++. .|..+ .......+||
T Consensus 341 --~~---------~~~~~~~~~l~~~g~p~~~~~g~~-i~~-~~~~---~-~~~~v~~---~G~~~~~~~~~~~~~rvg~ 400 (451)
T 2yrx_A 341 --EW---------TDEAVLGVVLAAKGYPGAYERGAE-IRG-LDRI---S-PDALLFH---AGTKREGGAWYTNGGRVLL 400 (451)
T ss_dssp --CB---------CSSEEEEEEEEETTTTSSCCCCCE-EBC-GGGS---C-TTSEEEE---SSEEEETTEEEECSSEEEE
T ss_pred --cc---------cCCceEEEEEecCCcCCCCCCCCc-CcC-cccc---C-CCCEEEe---CcccccCCeEEcCCCeEEE
Confidence 01 0134444444 3444444431 122 2322 2 4543332 12211 1122356999
Q ss_pred EEEEeCCHHHHHHHHHHhhcceEEec
Q 000092 496 VFAFGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 496 via~G~~reeA~~~l~~AL~el~I~G 521 (2267)
|++.|+|+++|++++.++++.+.++|
T Consensus 401 v~~~g~~~~ea~~~~~~~~~~i~~~~ 426 (451)
T 2yrx_A 401 LAAKGETLAKAKEKAYEQLAAIDCDG 426 (451)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCBCTT
T ss_pred EEEEeCCHHHHHHHHHHHhhccccCC
Confidence 99999999999999999999999998
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=361.84 Aligned_cols=374 Identities=20% Similarity=0.230 Sum_probs=274.3
Q ss_pred EEEEECchHHHHHHHHHH-HHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSI-RTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsa-R~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
||||+|+|.....+++++ +++|++++ + +.+. +....+.+| . ++. ++.|.+.|+++|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v---------~-~~~~----~~~~~~~~~-~--~~~-----~~~d~~~l~~~~~ 59 (422)
T 2xcl_A 2 NVLIIGKGGREHTLAWKAAQSSLVENV---------F-AAPG----NDGMAASAQ-L--VNI-----EESDHAGLVSFAK 59 (422)
T ss_dssp EEEEEECSHHHHHHHHHHTTCTTCSEE---------E-EEEC----CGGGTTTCE-E--CCC-----CTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEE---------E-EeCC----Chhhhhhcc-c--ccc-----CcCCHHHHHHHHH
Confidence 799999996666666655 45787764 1 2222 233345566 3 332 5678999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++++|+|+++.+... ...+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 60 ~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~---------------- 122 (422)
T 2xcl_A 60 QNQVGLTIVGPEVPL-IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYET---------------- 122 (422)
T ss_dssp HTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEE----------------
T ss_pred HcCCCEEEECCcHHH-HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEE----------------
Confidence 999999999854221 124678888999999999999999999999999999999999999875
Q ss_pred ccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceee
Q 000092 209 DVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLE 284 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhie 284 (2267)
+++.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.... .+.+++||+|++| +|++
T Consensus 123 -------~~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~s 194 (422)
T 2xcl_A 123 -------FTSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFS 194 (422)
T ss_dssp -------ESCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEE
T ss_pred -------ECCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEE
Confidence 778999999999999999999999999999999999999999999886521 1368999999995 8999
Q ss_pred EEEEEcCCCCEEEecccccccccccceEE------------EecCCCCCCHHHHHHHH-HHHHHHHHHc-----Cceeee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRHQKII------------EEGPITVAPLETVKKLE-QAARRLAKCV-----NYVGAA 346 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~qKii------------eeaPa~~l~~e~~~eL~-~~A~rla~aL-----Gy~Ga~ 346 (2267)
|.++.| |+.+... ...++|+++. ...|++.+++++.+++. +.+.++++++ +|.|++
T Consensus 195 v~~~~d--G~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 195 LMAFVK--GEKVYPM----VIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp EEEEEE--TTEEEEC----CCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEc--CCEEEec----ceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999987 4443332 2233344333 23577668888888884 4777777765 789999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCCc-ceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCccccccccccccc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVEH-PVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIAT 425 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh-pvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~i 425 (2267)
++||++++ +| +||+|+|||+++.. ...+..+|+|+.+++++++.|...+ +
T Consensus 269 ~vd~~~~~-~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~l~~-~-------------------------- 319 (422)
T 2xcl_A 269 YAGLMLTE-NG-SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDKEVD-L-------------------------- 319 (422)
T ss_dssp EEEEEEET-TE-EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTCCCC-C--------------------------
T ss_pred EeeEEEeC-CC-cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCCcCc-c--------------------------
Confidence 99999993 44 99999999998764 3455679999999999999885321 0
Q ss_pred CCCccccCCCCCceEEEEEEEcc----CCCCCCCCCCCCccccccccCCCcEEEEE-eee-eCCcccccCCcccEEEEEE
Q 000092 426 PFDFDQAESTRPKGHCVAVRVTS----EDPDDGFKPTSGKVQELSFKSKPNVWAYF-SVK-SGGGIHEFSDSQFGHVFAF 499 (2267)
Q Consensus 426 ~f~~~~~~~~~~~Ghai~aRI~a----Edp~~~F~Ps~G~i~~l~~~s~~~V~~~~-~v~-~G~~i~~~~Ds~~g~via~ 499 (2267)
.+ ..++++.+++.+ ++|..++ +..| +.++ . |++.++. +.. .++.+.... .++|||+++
T Consensus 320 ~~---------~~~~~~~~~~~~~g~~~~~~~g~-~i~~-~~~~---~-~~~~~~~~g~~~~~~~~~~~~-~r~~~v~~~ 383 (422)
T 2xcl_A 320 RW---------KDTAAVSVVLASEGYPESYAKGT-PIGS-LAAE---T-EQVVVFHAGTKAEGGEFVTNG-GRVANVTAF 383 (422)
T ss_dssp CB---------CSCEEEEEEEEETTTTSCCCSCC-BCCC-CCCC---S-SSEEEEESSEEECSSSEEECS-SEEEEEEEE
T ss_pred cc---------cCCceEEEEEECCCCCCCCCCCC-cccC-cccC---C-CCcEEEEeeeEeeCCEEEeCC-CceEEEEEE
Confidence 01 013455555543 3333333 2223 2222 2 5665432 111 113333333 448999999
Q ss_pred eCCHHHHHHHHHHhhcceEEec
Q 000092 500 GESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 500 G~~reeA~~~l~~AL~el~I~G 521 (2267)
|+|+++|++++.++++.+.++|
T Consensus 384 g~~~~~a~~~~~~~~~~i~~~g 405 (422)
T 2xcl_A 384 DETFEAARDRVYKAVDEIFKPG 405 (422)
T ss_dssp ESSHHHHHHHHHHHHHHHCCTT
T ss_pred eCCHHHHHHHHHHHHhcceeCC
Confidence 9999999999999999999988
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=354.98 Aligned_cols=384 Identities=18% Similarity=0.179 Sum_probs=283.5
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
+.||||+|+|.-...+++++++.+. +..|. +.+ .|......++ ...++ -++.|.+.|+++|
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~--------v~~v~-~~p----gn~g~~~~~~-~~~~~-----~~~~d~~~l~~~a 63 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPL--------ADKIY-VAP----GNAGTALEPT-LENVD-----IAATDIAGLLAFA 63 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTT--------EEEEE-EEE----CCHHHHHCTT-CEECC-----CCTTCHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCC--------CCEEE-EEC----CCHHHhhhcc-cceec-----CCcCCHHHHHHHH
Confidence 4589999999877778888877642 12222 232 2222223333 21122 1567899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 64 ~~~~id~vv~g~e~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~--------------- 127 (431)
T 3mjf_A 64 QSHDIGLTIVGPEAPLV-IGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQN--------------- 127 (431)
T ss_dssp HHTTEEEEEECSHHHHH-TTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEE---------------
T ss_pred HHhCcCEEEECCchHHH-HHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEe---------------
Confidence 99999999998543221 35788999999999999999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++++++|||+||||..|+||+||++++|.+|+.++++.+... ..+.+++||+|++| +|+
T Consensus 128 --------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~ 198 (431)
T 3mjf_A 128 --------FTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEA 198 (431)
T ss_dssp --------ESCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEE
T ss_pred --------eCCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEE
Confidence 78899999999999999999999999999999999999999999987632 22468999999996 899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceEEE------------ecCCCCCCHHHHHHHHHH----HHHHHHHcC--ceee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKIIE------------EGPITVAPLETVKKLEQA----ARRLAKCVN--YVGA 345 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie------------eaPa~~l~~e~~~eL~~~----A~rla~aLG--y~Ga 345 (2267)
+|.++.|+. +++.+.. .++|+++.+ ..|++.++++..+++.+. +.+.++++| |+|+
T Consensus 199 sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~ 272 (431)
T 3mjf_A 199 SFIVMVDGE-NVLPMAT-----SQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGF 272 (431)
T ss_dssp EEEEEEESS-CEEECCC-----BEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEEcCC-EEEEEEe-----eEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999874 6665532 344555433 468877899999888876 667777655 4899
Q ss_pred eEEEEEEEccCCcEEEeeeCccCcCCcceeh---hhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccc
Q 000092 346 ATVEYLYSMETGEYYFLELNPRLQVEHPVTE---WIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSV 422 (2267)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqgehpvtE---~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~ 422 (2267)
.++||++++ +|++||||+|||++ +|.++ ..+|+||.+++++++.|....
T Consensus 273 ~~ve~~~~~-~g~~~viEiN~R~G--~~~~~~i~~~~g~dl~~~~~~~~~G~l~~------------------------- 324 (431)
T 3mjf_A 273 LYAGLMISA-DGQPKVIEFNCRFG--DPETQPIMLRMRSDLVELCLAGTQGKLNE------------------------- 324 (431)
T ss_dssp EEEEEEECT-TSCEEEEEECGGGS--TTTHHHHHHHBCSCHHHHHHHHHTTCGGG-------------------------
T ss_pred EEEEEEEeC-CCCeEEEEEecCCC--CcHHHHHHHHHCCCHHHHHHHHHcCCCCC-------------------------
Confidence 999999984 56799999999997 55555 789999999999999996321
Q ss_pred cccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc-ccCCCcEEEEE-eeee-CC-cccccCCcccEEEEE
Q 000092 423 IATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS-FKSKPNVWAYF-SVKS-GG-GIHEFSDSQFGHVFA 498 (2267)
Q Consensus 423 ~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~-~~s~~~V~~~~-~v~~-G~-~i~~~~Ds~~g~via 498 (2267)
.++.|+ .....+.++++.-|++++.++. .|..+. ... +++.++. ++.. ++ .+. ....++++|++
T Consensus 325 ~~~~~~-----~~~a~~vv~a~~gyp~~~~~g~-----~i~~~~~~~~-~~~~~~~ag~~~~~~~~~~-~~ggRv~~v~~ 392 (431)
T 3mjf_A 325 KTSDWD-----ERPSLGVVLAAGGYPADYRQGD-----VIHGLPQQEV-KDGKVFHAGTKLNGNHEVV-TNGGRVLCVTA 392 (431)
T ss_dssp CCCCBC-----SSCEEEEEEEETTTTSCCCCCC-----BCBCCCSSCB-TTEEEEESSEEECTTSCEE-ECSSEEEEEEE
T ss_pred CCcccc-----CCcEEEEEecCCCcCccCCCCC-----EeeCCccccC-CCcEEEEeeeEecCCCEEE-ecCCeEEEEEE
Confidence 112221 1112234444444555554432 222221 111 4665442 2322 22 332 24577999999
Q ss_pred EeCCHHHHHHHHHHhhcceEEec
Q 000092 499 FGESRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 499 ~G~~reeA~~~l~~AL~el~I~G 521 (2267)
.|+|.++|+++++++++.+++.|
T Consensus 393 ~g~~~~~A~~~a~~~~~~i~~~~ 415 (431)
T 3mjf_A 393 LGETVAQAQQYAYQLAEGIQWEG 415 (431)
T ss_dssp ECSSHHHHHHHHHHHHTTCBCTT
T ss_pred ecCCHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999998
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=351.11 Aligned_cols=384 Identities=16% Similarity=0.144 Sum_probs=285.6
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHH
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMA 127 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA 127 (2267)
-.||||+|+|.-...+++++++.+. +..+.+ .+ ..+....+++.+.+ ++.|.+.|+++|
T Consensus 21 ~m~ilvlG~ggre~ala~~l~~s~~--------v~~v~~-~p-----gn~g~~~~~~~~~i-------~~~d~~~l~~~a 79 (442)
T 3lp8_A 21 SMNVLVIGSGGREHSMLHHIRKSTL--------LNKLFI-AP-----GREGMSGLADIIDI-------DINSTIEVIQVC 79 (442)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTT--------EEEEEE-EE-----CCGGGTTTSEECCC-------CTTCHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCC--------CCEEEE-EC-----CChHHhhccceeec-------CcCCHHHHHHHH
Confidence 3589999999888888888877632 222222 22 23455566766544 567899999999
Q ss_pred HHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 128 EMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 128 ~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+++++|+|++|.+.... ..+++.|++.|++++||++++++.++||..++++++++|||+|+|..
T Consensus 80 ~~~~id~vv~g~E~~l~-~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~--------------- 143 (442)
T 3lp8_A 80 KKEKIELVVIGPETPLM-NGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGY--------------- 143 (442)
T ss_dssp HHTTCCEEEECSHHHHH-TTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEE---------------
T ss_pred HHhCCCEEEECCcHHHH-HHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 99999999998433211 24678899999999999999999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE----VPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+++.++++++|||+||||..|+||+|+++++|.+|+.++++++... ..+.+++||+|++| +|+
T Consensus 144 --------~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~ 214 (442)
T 3lp8_A 144 --------FVDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEI 214 (442)
T ss_dssp --------ESSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEE
T ss_pred --------ECCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEE
Confidence 78899999999999999999999999999999999999999999988743 11368999999996 899
Q ss_pred eEEEEEcCCCCEEEecccccccccccceE------------EEecCCCCCCHHHHHHHHHH----HHHHHHHcCc--eee
Q 000092 284 EVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPITVAPLETVKKLEQA----ARRLAKCVNY--VGA 345 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~~l~~e~~~eL~~~----A~rla~aLGy--~Ga 345 (2267)
+|.++.|+. +++.+.. .++|++. ....|++.++++..+++.+. +.++++++|+ +|+
T Consensus 215 sv~~~~dg~-~~~~~~~-----~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~ 288 (442)
T 3lp8_A 215 SFFTLVDGS-NPVILGV-----AQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGL 288 (442)
T ss_dssp EEEEEEESS-CEEEEEE-----EEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEECCC-eEEEeEE-----eEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 999999864 4544321 2233333 23458877899999999887 8888888887 899
Q ss_pred eEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCCCcccccccccccc
Q 000092 346 ATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIA 424 (2267)
Q Consensus 346 ~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~~~~~~~~~~~~~~ 424 (2267)
+++||+++ .+++||||+|||+++ +++.+...+|.|+.+++++++.|..... .
T Consensus 289 ~~ve~~~~--~~g~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~l~~~-------------------------~ 341 (442)
T 3lp8_A 289 LFAGIIIK--KNEPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGKLGNE-------------------------S 341 (442)
T ss_dssp EEEEEEEE--TTEEEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTCCSSC-------------------------C
T ss_pred EEEEEEEe--CCCeEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCCCCCC-------------------------C
Confidence 99999999 345999999999995 5777777899999999999999963221 1
Q ss_pred cCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCcccccc-ccCCCcEEEEE-eeee-CCcccccCCcccEEEEEEeC
Q 000092 425 TPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELS-FKSKPNVWAYF-SVKS-GGGIHEFSDSQFGHVFAFGE 501 (2267)
Q Consensus 425 i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~-~~s~~~V~~~~-~v~~-G~~i~~~~Ds~~g~via~G~ 501 (2267)
+.|. ....-+.++++.-|++++..+ ..|..+. ....+++.++. ++.. .+.+. ....+++.|++.|+
T Consensus 342 ~~~~-----~~~a~~vv~a~~gyp~~~~~g-----~~i~g~~~~~~~~~~~~~~ag~~~~~~~~~-~~ggRv~~v~~~g~ 410 (442)
T 3lp8_A 342 VELS-----KKAALCVVVASRGYPGEYKKN-----SIINGIENIEKLPNVQLLHAGTRREGNNWV-SDSGRVINVVAQGE 410 (442)
T ss_dssp CCBC-----SCEEEEEEEEETTTTSSCCSS-----CEEBSHHHHHTCSSEEEEESSEEEETTEEE-ECSSEEEEEEEEES
T ss_pred ceec-----cCcEEEEEEccCCCCCCCCCC-----CEeeCCcccccCCCcEEEEeeeeccCCeEE-ecCCeEEEEEEecC
Confidence 1221 001112223333334333222 1233232 23335665442 2221 22222 24567999999999
Q ss_pred CHHHHHHHHHHhhcceEEec
Q 000092 502 SRALAIANMVLGLKEIQIRG 521 (2267)
Q Consensus 502 ~reeA~~~l~~AL~el~I~G 521 (2267)
|.++|+++++++++.+++.|
T Consensus 411 ~~~~A~~~a~~~~~~i~~~~ 430 (442)
T 3lp8_A 411 NLASAKHQAYAALDLLDWPD 430 (442)
T ss_dssp SHHHHHHHHHHHHTTCBCTT
T ss_pred CHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999998
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=381.58 Aligned_cols=304 Identities=17% Similarity=0.276 Sum_probs=241.9
Q ss_pred CccEEEEECchHH-----------HHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGMA-----------AVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~~-----------Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
+.+||||+|+|.. +++++++++++||+++ ++..+.+..+.....||+.+..|
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi-----------~v~~np~~~s~~~~~ad~~~~~p------ 620 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-----------MVNCNPETVSTDYDTSDRLYFEP------ 620 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-----------EECCCTTSSTTSTTSSSEEECCC------
T ss_pred cCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEE-----------EEecCCcccccccccccEEEecc------
Confidence 5689999999984 5788999999999986 44333333334556789887543
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
.+.+.++++++..++|+|++++|.... ..++..|++.|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 621 --~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~--- 694 (1073)
T 1a9x_A 621 --VTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANAT--- 694 (1073)
T ss_dssp --CSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE---
T ss_pred --chhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceE---
Confidence 458999999999999999999875332 25788999999999999999999999999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEe 275 (2267)
+.+.+++.++++++|||+||||+.|+||+||++|++.+|+.++++.+.......+++||+
T Consensus 695 --------------------~~s~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEe 754 (1073)
T 1a9x_A 695 --------------------VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754 (1073)
T ss_dssp --------------------CCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEB
T ss_pred --------------------ECCHHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999999999999999999999999999999999999999999876555567999999
Q ss_pred eccccceeeEEEEEcCCCCEEEecccccccccc--c-ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRR--H-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 276 yI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr--~-qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
|++|.+|++|++++|+.+.++...... +.+. | .......|+..++++..+++.+.+.++++++|++|.++|||++
T Consensus 755 fI~g~~E~~V~~l~d~~~v~~~~i~e~--~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v 832 (1073)
T 1a9x_A 755 FLDDAVEVDVDAICDGEMVLIGGIMEH--IEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV 832 (1073)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEEEEEE--SSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEECCeEEEEeeEEE--EeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 999977999999999754332211111 1111 1 1112345776789999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 353 SMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+ ++++||||+|||+++++|+++.++|+|++++++++++|.+++
T Consensus 833 ~--~~~~~viEvNpR~~~~~~~~~~~tGi~l~~~~~~~~~G~~l~ 875 (1073)
T 1a9x_A 833 K--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLA 875 (1073)
T ss_dssp C--SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHH
T ss_pred E--CCeEEEEEEECCCccHHHHHHHHHCcCHHHHHHHHHcCCCch
Confidence 7 789999999999999999999999999999999999999875
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=323.93 Aligned_cols=290 Identities=17% Similarity=0.193 Sum_probs=212.2
Q ss_pred cEEEEECchHHHHHHHHHHHHc-C-CcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTW-A-YETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~l-G-~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+||||+|+|.. ..+++++++. | ++++ ++ |.+++++...++|+++.+|... +..| .+.++++
T Consensus 5 ~~Ili~g~g~~-~~l~~~l~~~~~~~~v~-----------~~--d~~~~~~~~~~~d~~~~~~~~~-~~~~--~~~l~~~ 67 (331)
T 2pn1_A 5 PHLLITSAGRR-AKLVEYFVKEFKTGRVS-----------TA--DCSPLASALYMADQHYIVPKID-EVEY--IDHLLTL 67 (331)
T ss_dssp CEEEEESCTTC-HHHHHHHHHHCCSSEEE-----------EE--ESCTTCGGGGGSSSEEECCCTT-STTH--HHHHHHH
T ss_pred ceEEEecCCch-HHHHHHHHHhcCCCEEE-----------EE--eCCCcchhHHhhhceecCCCCC-ChhH--HHHHHHH
Confidence 58999999865 5677888876 5 5654 44 4456777888999999887432 2333 8999999
Q ss_pred HHHcCCCEEEeCCCcCC-CCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 127 AEMTRVDAVWPGWGHAS-EIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~s-En~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
++++++|+|+|+++... ..+.+.+.|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 68 ~~~~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~------------- 134 (331)
T 2pn1_A 68 CQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYA------------- 134 (331)
T ss_dssp HHHHTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEES-------------
T ss_pred HHHcCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEe-------------
Confidence 99999999999876322 1122356777789999999999999999999999999999999999653
Q ss_pred cCcccccccccCCHHHHHHHH--hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 206 IPDDVYRQACVYTTEEAIASC--QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a--~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+++.+++ +.+|||+|+||..|+||+|++++++.+|+.++++. ..+++||+|++| +|+
T Consensus 135 ------------~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~------~~~~lvee~i~G-~e~ 195 (331)
T 2pn1_A 135 ------------TMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK------NTDLIVQELLVG-QEL 195 (331)
T ss_dssp ------------SHHHHHHHHHTTSSCSCEEEEESBC-----------------------------CEEEEECCCS-EEE
T ss_pred ------------cHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh------CCCeEEEecCCC-cEE
Confidence 345555555 57899999999999999999999999999988764 348999999998 899
Q ss_pred eEEEEEc-CCCCEEEecccccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEe
Q 000092 284 EVQLLCD-QYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFL 362 (2267)
Q Consensus 284 eVqvl~D-~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfL 362 (2267)
+|.++.| .+|+++.+..+.+...+.. .....+.. ..+++.+.+.++++++||.|.+++||+.+ +|++||+
T Consensus 196 ~v~~~~d~~~G~~~~~~~~~~~~~~~g--~~~~~~~~-----~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g~~~~i 266 (331)
T 2pn1_A 196 GVDAYVDLISGKVTSIFIKEKLTMRAG--ETDKSRSV-----LRDDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLS 266 (331)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEEEETT--EEEEEEEE-----CCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TTEEEEE
T ss_pred EEEEEEecCCCeEEEEEEEEEEEecCC--ceeEeEEe-----ccHHHHHHHHHHHHHhCCcceEEEEEEEc--CCCEEEE
Confidence 9999998 7788887666554332222 11122211 13678889999999999999999999965 7899999
Q ss_pred eeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 363 ELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 363 EINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
|+|||+++.+++ +..+|+|++++++++++|.+++
T Consensus 267 EiN~R~~g~~~~-~~~~G~~~~~~~~~~~~g~~~~ 300 (331)
T 2pn1_A 267 EINPRFGGGYPH-AYECGVNFPAQLYRNLMHEINV 300 (331)
T ss_dssp EEESSCCTTHHH-HHHTTCCHHHHHHHHHTTCCCC
T ss_pred EEeCCCCCchHH-HHHcCCCHHHHHHHHHcCCCCC
Confidence 999999999875 6789999999999999999875
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-30 Score=315.54 Aligned_cols=242 Identities=18% Similarity=0.156 Sum_probs=195.8
Q ss_pred HHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCC
Q 000092 123 IVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPES 201 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~ 201 (2267)
+.+..+..++|+|+|. +|+..|+..++..|+..||+|+||++.++..+.||..+|++++++|||+|||..- .
T Consensus 89 ~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~----~--- 161 (357)
T 4fu0_A 89 ASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTF----K--- 161 (357)
T ss_dssp ----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEE----E---
T ss_pred hhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEee----c---
Confidence 3445566789999998 7899999999999999999999999999999999999999999999999998650 0
Q ss_pred cccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccc
Q 000092 202 CLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSR 281 (2267)
Q Consensus 202 ~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~r 281 (2267)
......++.++++++||||||||+.|+||+||++|++.+||.++++.+... +..+++|+|++| +
T Consensus 162 -------------~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~--~~~vlvE~~i~G-~ 225 (357)
T 4fu0_A 162 -------------RFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH--DTEVIVEETING-F 225 (357)
T ss_dssp -------------GGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCCS-E
T ss_pred -------------CCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc--CCeEEEEEecCC-E
Confidence 012234455677889999999999999999999999999999999988754 568999999976 8
Q ss_pred eeeEEEEEcCCCCEEEe--cccccccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 282 HLEVQLLCDQYGNVAAL--HSRDCSVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 282 hieVqvl~D~~G~vi~l--~~Rdcsvqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
|++|++++++.+.+..+ ....+.+++.++|... ..|+. +++++.+++++.|.+++++||++|.++|||++++
T Consensus 226 e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~ 304 (357)
T 4fu0_A 226 EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP 304 (357)
T ss_dssp EEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC
Confidence 99999999876544322 2334556666666543 23554 8999999999999999999999999999999984
Q ss_pred cCCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHH
Q 000092 355 ETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~ 389 (2267)
+|++||||||||++-. .|..-.++|+|+.++.-+
T Consensus 305 -dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 305 -SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred -CCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHH
Confidence 7889999999998754 244445689988776444
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=295.22 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=191.7
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 155 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIV--------------- 155 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEE---------------
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEE---------------
Confidence 35799999997 67778888899999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHH----HHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTEE----AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~ee----a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.++ +.++++.+|||+||||..|+||+||.+|++.+||.++++.+... +.+++||+||+|.+|+
T Consensus 156 --------~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~ 225 (377)
T 1ehi_A 156 --------VDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--DYKVLIEEAVNGAREL 225 (377)
T ss_dssp --------ECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCCSCEE
T ss_pred --------EeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCceE
Confidence 233322 45566789999999999999999999999999999999887643 4689999999876899
Q ss_pred eEEEEEcCCCCEEEecccccc-------cccccceE------EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEE
Q 000092 284 EVQLLCDQYGNVAALHSRDCS-------VQRRHQKI------IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEY 350 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcs-------vqrr~qKi------ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEf 350 (2267)
+|.+++|+.+.++....+.+. +.+.+.|. ....|+. ++++..+++.+.|.++++++|+.|.++|||
T Consensus 226 ~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 304 (377)
T 1ehi_A 226 EVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 (377)
T ss_dssp EEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876566665444331 22222222 2345776 889999999999999999999999999999
Q ss_pred EEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHH
Q 000092 351 LYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~ 389 (2267)
++++ +|++||||+|||++... |....++|+|++++..+
T Consensus 305 ~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~ 346 (377)
T 1ehi_A 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDM 346 (377)
T ss_dssp EECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHH
T ss_pred EEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 9984 67899999999998653 44445799999666444
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=286.02 Aligned_cols=278 Identities=18% Similarity=0.202 Sum_probs=211.5
Q ss_pred CCccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCC
Q 000092 46 KPIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNN 116 (2267)
Q Consensus 46 ~~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~ 116 (2267)
.|.+||+|+-+|. .|..+++++++.||+++ .+ |.+..
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~-----------~i--~~~~~--------------------- 56 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAH-----------PF--DPAER--------------------- 56 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTTTS---------------------
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEE-----------EE--eCCCc---------------------
Confidence 3567888887764 68899999999999986 33 21100
Q ss_pred ccCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 117 YANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 117 Y~dvd~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
+. . ..++.++|.|++.. |...|+..++..|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 57 ~~--~----~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--- 127 (317)
T 4eg0_A 57 PL--S----ALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFET--- 127 (317)
T ss_dssp CT--T----HHHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---
T ss_pred hH--H----HhhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 00 0 12456899999865 34458888999999999999999999999999999999999999999999875
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHH----hhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC----QVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a----~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I 271 (2267)
+.+.+++.+++ +.+|||+||||..|+||+||++|++.+|+.++++.+... ..++
T Consensus 128 --------------------~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~ 185 (317)
T 4eg0_A 128 --------------------VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAATH--DKIV 185 (317)
T ss_dssp --------------------EETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTTT--CSEE
T ss_pred --------------------EECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeE
Confidence 33444444555 789999999999999999999999999999999886533 5689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEecccccccccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeee
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~ 346 (2267)
+||+|++.++|++|.+++|..+.++.+..... +.....|. ....|+. ++++..+++.+.+.++++++|++|.+
T Consensus 186 lvEe~i~~G~E~~v~vl~~~~~~~~~i~~~~~-~~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~~~a~~~~~~lg~~G~~ 263 (317)
T 4eg0_A 186 IVEKSIEGGGEYTACIAGDLDLPLIKIVPAGE-FYDYHAKYVANDTQYLIPCG-LPAEQETELKRIARRAFDVLGCTDWG 263 (317)
T ss_dssp EEEECCCSSEEEEEEEETTCCCCCEEEEC----------------CEEESSCS-SCHHHHHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEcCCCCCcEEEEEEECCcccceEEEeeCCc-eechhhcccCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCceE
Confidence 99999984499999999887666666543321 22222222 2456775 88999999999999999999999999
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHHH
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~iA 391 (2267)
+|||++++ +|++||||+|||++.. .|.....+|+|++++..++.
T Consensus 264 ~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 264 RADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp EEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99999984 6889999999999854 24444578999998877764
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=293.67 Aligned_cols=235 Identities=18% Similarity=0.206 Sum_probs=187.9
Q ss_pred HHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 128 EMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 128 ~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
+..++|+|+|+. |...|+..++..++..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~-------------- 149 (364)
T 2i87_A 84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYIS-------------- 149 (364)
T ss_dssp TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEE--------------
T ss_pred cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE--------------
Confidence 356799999987 67788888899999999999999999999999999999999999999999875
Q ss_pred CcccccccccCCHH-------HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc
Q 000092 207 PDDVYRQACVYTTE-------EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279 (2267)
Q Consensus 207 ~~~~~~~~~V~s~e-------ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g 279 (2267)
+.+.+ ++.++++++|||+||||..|+||+||.+|++.++|..+++.+.. .+.+++||+|++|
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~--~~~~~lvEe~I~G 218 (364)
T 2i87_A 150 ---------FLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ--FDRKLVIEQGVNA 218 (364)
T ss_dssp ---------EEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT--TCSEEEEEECCCC
T ss_pred ---------EechhhcccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCeEEEEeCccC
Confidence 33333 45666788999999999999999999999999999999988764 2568999999987
Q ss_pred cceeeEEEEEcCCCCEEEeccccc--ccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDC--SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdc--svqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
+|++|.+++++.+.++......+ .+.+...|... ..|+. ++++..+++.+.|.++++++|+.|.++|||++
T Consensus 219 -~E~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 296 (364)
T 2i87_A 219 -REIEVAVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMALEAFKATDCSGLVRADFFV 296 (364)
T ss_dssp -EEEEEEEEESSSCEECCCEEECCSCCC-----------CCEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred -eEEEEEEEcCCCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 89999999986543333222221 22233333332 35766 88999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
++ +|++||||+|||+++.. |....++|+|++++..++
T Consensus 297 ~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 337 (364)
T 2i87_A 297 TE-DNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKL 337 (364)
T ss_dssp CT-TCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred ec-CCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHH
Confidence 84 68899999999998753 334456899997765443
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=277.87 Aligned_cols=273 Identities=17% Similarity=0.265 Sum_probs=210.8
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000092 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 47 ~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y 117 (2267)
|.+||+|+++|. .+..++++++++||+++ .+ |.+ +....+
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~-----------~~--~~~-~~~~~~----------------- 49 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------PV--DPK-EVDVTQ----------------- 49 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTT-TSCGGG-----------------
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEE-----------EE--ecC-chHHHH-----------------
Confidence 346899999987 77899999999999985 33 221 111100
Q ss_pred cCHHHHHHHHHHcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCcc
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVK 196 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~ 196 (2267)
+.+.++|+|++.. |...|+..+...++..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 50 ---------~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~---- 116 (306)
T 1iow_A 50 ---------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA---- 116 (306)
T ss_dssp ---------TTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE----
T ss_pred ---------hhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEE----
Confidence 1124678998874 33346667788888899999999999999999999999999999999999865
Q ss_pred CCCCCcccccCcccccccccCCHHHHHH--------HHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCC
Q 000092 197 IPPESCLVTIPDDVYRQACVYTTEEAIA--------SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPG 268 (2267)
Q Consensus 197 ~~~~~~~~~v~~~~~~~~~V~s~eea~~--------~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~ 268 (2267)
+.+. ++.+ +++++|||+|+||..|+||+||++|++.+++.++++.+... +
T Consensus 117 -------------------~~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~--~ 174 (306)
T 1iow_A 117 -------------------LTRA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH--D 174 (306)
T ss_dssp -------------------EEHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT--C
T ss_pred -------------------Echh-hhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--C
Confidence 3444 5555 67789999999999999999999999999999999877532 5
Q ss_pred CcEEEEEeccccceeeEEEEEcCCCCEEEecccc-----ccccccc--ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 000092 269 SPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRD-----CSVQRRH--QKIIEEGPITVAPLETVKKLEQAARRLAKCVN 341 (2267)
Q Consensus 269 ~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rd-----csvqrr~--qKiieeaPa~~l~~e~~~eL~~~A~rla~aLG 341 (2267)
.+++||+|++| +|++|.++ + |.++....+. +.....+ .......|+. ++++..+++.+.+.++++++|
T Consensus 175 ~~~lvee~i~g-~e~~v~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg 249 (306)
T 1iow_A 175 EEVLIEKWLSG-PEFTVAIL-G--EEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG-LEASQEANLQALVLKAWTTLG 249 (306)
T ss_dssp SEEEEEECCCC-CEEEEEEE-T--TEECCCEEEECSSSSSCHHHHHTCSCCEEESSCC-CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCcCC-EEEEEEEE-C--CCccceEEEEeCCCeEchhheecCCCeeEEcCCC-CCHHHHHHHHHHHHHHHHHcC
Confidence 68999999986 89999998 3 3443322110 1110000 1223455765 788899999999999999999
Q ss_pred ceeeeEEEEEEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 342 YVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 342 y~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
+.|.+++||++++ +|++||+|+|||+++.. |.....+|+|++++.+++.
T Consensus 250 ~~G~~~vD~~~~~-~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 250 CKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp CCSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CceEEEEEEEEcC-CCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999984 67899999999998753 3445678999999988765
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=293.02 Aligned_cols=234 Identities=16% Similarity=0.200 Sum_probs=192.9
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+ .|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~--------------- 179 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVC--------------- 179 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 4579999999 788889999999999999999999999999999999999999999999999876
Q ss_pred cccccccccCCHH----HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+ ++.++++.+|||+||||..|+||+||++|++.+||.++++.+... +.+++||+||+| +|+
T Consensus 180 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 180 --------FDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY--DHKVLVEAAVAG-REI 248 (386)
T ss_dssp --------EEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT--CSEEEEEECCCS-EEE
T ss_pred --------EeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC--CCcEEEEcCCCC-eEE
Confidence 44444 666778899999999999999999999999999999999887643 468999999987 999
Q ss_pred eEEEEEcCCCCEEEecccccc--cccccceEEE------ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 284 EVQLLCDQYGNVAALHSRDCS--VQRRHQKIIE------EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~Rdcs--vqrr~qKiie------eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
+|.+++|+.+.++......+. ++....|... ..|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA- 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-
T ss_pred EEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 999999876666655554443 2333444443 24776 8899999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++.. .|.....+|+|++++..++
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6789999999999854 2444557899998876554
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=287.47 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=195.6
Q ss_pred cCceE---EEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccCCCCCCChHHHhcccccCCCCccccccc
Q 000092 1807 NGVVH---LTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIFD 1882 (2267)
Q Consensus 1807 nGv~d---~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~R~~i~~~~~~~~~~~~gl~D 1882 (2267)
+|.+| .++.+|.++.+.+++.++.+++. ++. +..-|.++|+ |++|+. |||
T Consensus 37 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~r~~~-re~I~~-----------l~D 90 (327)
T 2f9i_A 37 KNDVDLQEEIDMLEASLERETKKIYTNLKPW--------------DRVQIARLQERPTT-LDYIPY-----------IFD 90 (327)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHSCCHH--------------HHHHHHTBTTSCCH-HHHHHH-----------HCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCChh--------------hcccccCCCCCCCH-HHHHHH-----------hcc
Confidence 44455 67888899999999999987621 110 1112336786 999997 799
Q ss_pred CCCceeccc--ccc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHH
Q 000092 1883 KDSFVETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMD 1958 (2267)
Q Consensus 1883 ~gSF~E~~~--~~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~ 1958 (2267)
+ |+|+.. .|+ +++|||+|||+|+||+||++++++ ++.+ .+.+.||+|+|++++|++|++++
T Consensus 91 ~--f~El~~d~~~~~d~~vV~G~gri~G~~V~Via~d~~~------------~~~~-~~~~~~G~~~~~~~~Ka~r~~~~ 155 (327)
T 2f9i_A 91 S--FMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGK------------DTKD-NIYRNFGMAHPEGYRKALRLMKQ 155 (327)
T ss_dssp E--EEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------SHHH-HHHTGGGCCCHHHHHHHHHHHHH
T ss_pred c--eEEecCCCCcCcccceEEEEEEECCEEEEEEEEcCCC------------chhh-hhhhhcCCCCHHHHHHHHHHHHH
Confidence 8 999988 688 899999999999999999997542 2222 33446899999999999999999
Q ss_pred hcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccc
Q 000092 1959 FNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT 2038 (2267)
Q Consensus 1959 a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~ 2038 (2267)
|+++++|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ ++|||+
T Consensus 156 A~~~~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~~~ 228 (327)
T 2f9i_A 156 AEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVI--GEGGSGGALGIGI---ANK--VLMLEN 228 (327)
T ss_dssp HHHTTCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEBHHHHHTTCC---CSE--EEEETT
T ss_pred HhhcCCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEE--CCcChHHHHHHHC---CCE--EEEcCC
Confidence 999999999999999999999999999999999999999999999999998 7777655544443 688 999999
Q ss_pred cEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhh
Q 000092 2039 AKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELH 2118 (2267)
Q Consensus 2039 A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlh 2118 (2267)
|++|+++|++++.+.+++.... .+ |.++ .+
T Consensus 229 A~~~v~~peg~a~il~~~~~~a--------------------------~~----------------------A~e~--~~ 258 (327)
T 2f9i_A 229 STYSVISPEGAAALLWKDSNLA--------------------------KI----------------------AAET--MK 258 (327)
T ss_dssp CBCBSSCHHHHHHHHSSCGGGH--------------------------HH----------------------HHHH--HT
T ss_pred ceEeecCchHHHHHHHHHhcch--------------------------HH----------------------HHHH--cC
Confidence 9999999999999998865210 00 0011 34
Q ss_pred CcHHHHHHcCCcccccCc-----cchHHHHHHHHHHHHh
Q 000092 2119 DTSLRMAAKGVIKEVVDW-----DKSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2119 dt~~rm~~~G~Id~ii~~-----~~~R~~~~~~L~r~l~ 2152 (2267)
.+|.++++.|+||+||+. ...+..+++.+|+.|.
T Consensus 259 itA~~a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 297 (327)
T 2f9i_A 259 ITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFV 297 (327)
T ss_dssp CBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHH
T ss_pred CCHHHHHHcCCceEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 578999999999999993 3556677777777764
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-27 Score=288.47 Aligned_cols=246 Identities=16% Similarity=0.199 Sum_probs=197.4
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCCCCC-CccCCCCCCChHHHhcccccCCCCcccccccCCCce
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYVPPHIGGALPIISPLDPPDRP-VEYLPENSCDPRAAICGFLDNNGKWIGGIFDKDSFV 1887 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~LsylP~~~~~~~p~~~~~d~~~r~-~~~~P~~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~ 1887 (2267)
+++.+..+|.++...++++.+.|++. +|. +..-|.++|+ |++|+. |||+ |+
T Consensus 56 ~~~~~~~~e~~~~~~~~~~~~~l~~~--------------~r~~~~r~~~rp~~-re~I~~-----------l~D~--f~ 107 (339)
T 2f9y_A 56 IDEEVHRLREKSVELTRKIFADLGAW--------------QIAQLARHPQRPYT-LDYVRL-----------AFDE--FD 107 (339)
T ss_dssp -CCGGGGTHHHHHTTTTHHHHTCCHH--------------HHHHHHTCTTCCCH-HHHHHH-----------HCEE--EE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHH--------------HhhcccCCCCCCCH-HHHHHH-----------Hccc--cE
Confidence 56667888899999999999887631 111 0111236786 999997 7998 99
Q ss_pred eccc--ccc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccC
Q 000092 1888 ETLE--GWA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREE 1963 (2267)
Q Consensus 1888 E~~~--~~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~ 1963 (2267)
|+.. .|+ +++|||+|||+|+||+||++|++. ++.+ .+.+.||+|+|++++|++|++++|++++
T Consensus 108 El~g~~~~~~d~avV~G~ari~G~~V~Via~d~~~------------~~~~-~~~~~~G~~~~~~~~Ka~r~~~~A~~~~ 174 (339)
T 2f9y_A 108 ELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGR------------ETKE-KIRRNFGMPAPEGYRKALRLMQMAERFK 174 (339)
T ss_dssp ECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------STTH-HHHTGGGCCCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCcCCCCCCcEEEEEEEECCEEEEEEEEeCCC------------chhh-hhhhhcCCCCHHHHHHHHHHHHHHhhcC
Confidence 9987 688 899999999999999999997542 1222 3445689999999999999999999999
Q ss_pred CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 1964 LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 1964 lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+|||+|+||+||.+|..+|..|+.+++++++.+++++++|+|++|. |+++||+..++.. +|+ +||||+|++|+
T Consensus 175 lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~--G~a~GGGa~~~~~---~D~--via~p~A~~~v 247 (339)
T 2f9y_A 175 MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVI--GEGGSGGALAIGV---GDK--VNMLQYSTYSV 247 (339)
T ss_dssp CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEEHHHHHTTCC---CSE--EEECTTCEEES
T ss_pred CCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe--CCcCcHHHHHHhc---cCe--eeecCCCEEEe
Confidence 9999999999999999999999999999999999999999999998 7777665544443 688 99999999999
Q ss_pred eCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHH
Q 000092 2044 LEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLR 2123 (2267)
Q Consensus 2044 l~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~r 2123 (2267)
++|++++.|.+++..-. .+ |.++ .+.++.+
T Consensus 248 ~~Peg~asil~~~~~~~--------------------------~~----------------------Aae~--~~itA~~ 277 (339)
T 2f9y_A 248 ISPEGCASILWKSADKA--------------------------PL----------------------AAEA--MGIIRPR 277 (339)
T ss_dssp SCHHHHHHHHSSCSTTH--------------------------HH----------------------HHHH--HTCSHHH
T ss_pred eccchHHHHHHHhhccH--------------------------HH----------------------HHHH--cCCCHHH
Confidence 99999999998865100 00 0111 3457899
Q ss_pred HHHcCCcccccCc-----cchHHHHHHHHHHHHh
Q 000092 2124 MAAKGVIKEVVDW-----DKSRSFFCRRLRRRVA 2152 (2267)
Q Consensus 2124 m~~~G~Id~ii~~-----~~~R~~~~~~L~r~l~ 2152 (2267)
+++.|+||+||+. ...+..+++.||..|.
T Consensus 278 a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~ 311 (339)
T 2f9y_A 278 LKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLL 311 (339)
T ss_dssp HHTTTSCSCCCCCSTTCGGGCHHHHHHHHHHHHH
T ss_pred HHHcCCeeEEecCCCCCCccCHHHHHHHHHHHHH
Confidence 9999999999993 4556778888887764
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=283.26 Aligned_cols=233 Identities=18% Similarity=0.183 Sum_probs=193.0
Q ss_pred HcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+ +|...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~--------------- 160 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT--------------- 160 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEE---------------
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 3578999999 699999999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHH----HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 208 DDVYRQACVYTTE----EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 208 ~~~~~~~~V~s~e----ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+++.+ ++.++++++|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+|++| +|+
T Consensus 161 --------~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~--~~~vlVEe~I~G-~E~ 229 (364)
T 3i12_A 161 --------LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF--DHKVVVEQGIKG-REI 229 (364)
T ss_dssp --------EETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEE
T ss_pred --------EEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc--CCcEEEEcCcCC-eEE
Confidence 33333 566777889999999999999999999999999999999987654 468999999988 999
Q ss_pred eEEEEEcCCCCEEEeccc---ccccccccce------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 284 EVQLLCDQYGNVAALHSR---DCSVQRRHQK------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~R---dcsvqrr~qK------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
+|.+++|+.+.+...... ++ ++....| .....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 230 ~v~vl~~~~~~~~~~~ei~~~~~-~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIVLNSE-FYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEECCTT-CC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEeCCCceEeeeEEEecCCC-ccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 999999876444443321 11 2222222 23345776 8899999999999999999999999999999984
Q ss_pred cCCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 355 ETGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++.. .|.....+|+|++++..++
T Consensus 308 -~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 308 -DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHH
Confidence 6889999999988754 2554567899999876554
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=274.17 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=163.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc------------------------ccceEEEEEEEECCeEEEEEE
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG------------------------WARTVVTGRARLGGIPVGIVA 1913 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~------------------------~a~~vVtG~arl~G~pVgViA 1913 (2267)
.++++|++|+. |||+|||+|+... ++++||||+|+|+|+||+|++
T Consensus 59 ~r~~arerI~~-----------L~D~gsF~El~~~~~~~~~l~f~~y~~~l~~~~~~t~~~~avVtG~g~I~G~~V~v~a 127 (285)
T 2f9i_B 59 IALTAYKRIEA-----------ISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAV 127 (285)
T ss_dssp CCCCHHHHHHH-----------TSCTTCCEEESTTCEECCTTCCTTHHHHHHHHHHHHCCSSSEEEEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHH-----------HccCCCcEEECCCcCcCCcccccchhHHHHHHhhccCCCCeEEEEEEEECCEEEEEEE
Confidence 67999999997 8999999999876 789999999999999999999
Q ss_pred EeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHH
Q 000092 1914 VETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGS 1991 (2267)
Q Consensus 1914 ~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga 1991 (2267)
+|++++ ||++++.+++|++|+++.|+++++|||+|+|++|+ .|++|+++ .++
T Consensus 128 ~d~~~~---------------------gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgGa-----r~qEGi~sl~q~a 181 (285)
T 2f9i_B 128 MDSRFR---------------------MGSMGSVIGEKICRIIDYCTENRLPFILFSASGGA-----RMQEGIISLMQMG 181 (285)
T ss_dssp ECTTTG---------------------GGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECSC-----CGGGHHHHHHHHH
T ss_pred Eccccc---------------------cCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc-----chhhhhhhHhHHH
Confidence 998766 89999999999999999999999999999999996 46778775 445
Q ss_pred H---HHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchH
Q 000092 1992 T---IVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2068 (2267)
Q Consensus 1992 ~---iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~ 2068 (2267)
+ .+.+++++++|+|++|+ |+++||+...+. ..+|+ ++|||+|++||+||+++..+.+++-
T Consensus 182 ki~~~l~~~s~~~vP~Isvv~--g~~~GG~~as~a--~~~D~--i~a~p~A~i~~aGP~vi~~~~~~~~----------- 244 (285)
T 2f9i_B 182 KTSVSLKRHSDAGLLYISYLT--HPTTGGVSASFA--SVGDI--NLSEPKALIGFAGRRVIEQTINEKL----------- 244 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGG--GCCSE--EEECTTCBEESSCHHHHHHHHTSCC-----------
T ss_pred HHHHHHHHHHcCCCCEEEEEe--CCccHHHHHHhh--hCCCE--EEEeCCcEEEEcCHHHHHHHhcccc-----------
Confidence 5 67778888999999999 888998866553 35788 9999999999999999876653211
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHH
Q 000092 2069 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2148 (2267)
Q Consensus 2069 ~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~ 2148 (2267)
| +.+.+|..+.++|+||.||+++++|..+...|.
T Consensus 245 ------------------------------------~----------e~~~~Ae~~~~~G~iD~Iv~~~e~r~~l~~~L~ 278 (285)
T 2f9i_B 245 ------------------------------------P----------DDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILK 278 (285)
T ss_dssp ------------------------------------C----------TTTTBHHHHHHTTCCSEECCGGGHHHHHHHHHH
T ss_pred ------------------------------------h----------HhHhhHHHHHhcCCccEEeChHHHHHHHHHHHH
Confidence 0 112357788899999999999999998887775
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=275.91 Aligned_cols=270 Identities=19% Similarity=0.233 Sum_probs=202.1
Q ss_pred EEEEECch---------HHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCH
Q 000092 50 SILIANNG---------MAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANV 120 (2267)
Q Consensus 50 kVLIan~G---------~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dv 120 (2267)
||+|+-+| ..+..+++++++.||+++ .. |.+....
T Consensus 5 ~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~-----------~i--~~~~~~~----------------------- 48 (307)
T 3r5x_A 5 RIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIV-----------PI--TLNEKMD----------------------- 48 (307)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEE-----------EE--ECSSGGG-----------------------
T ss_pred EEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEE-----------EE--cccCchh-----------------------
Confidence 67777665 457889999999998875 23 2110000
Q ss_pred HHHHHHHHHcCCCEEEeCCCc-CCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCC
Q 000092 121 QLIVEMAEMTRVDAVWPGWGH-ASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPP 199 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~-~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~ 199 (2267)
+ +.+..++|.|+++... ..|+..+...|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 49 --~--~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~------- 117 (307)
T 3r5x_A 49 --L--IEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIE------- 117 (307)
T ss_dssp --H--HHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE-------
T ss_pred --H--HHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE-------
Confidence 0 1223578999998643 237777888999999999999999999999999999999999999999875
Q ss_pred CCcccccCcccccccccCCHHHHHH-HHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 200 ESCLVTIPDDVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 200 ~~~~~~v~~~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
+.+.+++.. +++.+|||+||||..|+||+||++|++.+++.++++.+... +.+++||+|++
T Consensus 118 ----------------~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~lvee~i~ 179 (307)
T 3r5x_A 118 ----------------LTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIK 179 (307)
T ss_dssp ----------------EESSSCCCHHHHHHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH--CSEEEEEECCC
T ss_pred ----------------EeChhhhhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEECCcC
Confidence 222222222 56789999999999999999999999999999999887654 56899999999
Q ss_pred ccceeeEEEEEcCCCCEEEecccccccc--cccceE----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQ--RRHQKI----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsvq--rr~qKi----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
| +|++|.++. |+++.+....+..+ ....|. ....|+. ++++..+++.+.+.++++++|+.|.+++||++
T Consensus 180 G-~e~~v~v~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~ 254 (307)
T 3r5x_A 180 G-EEITCSIFD---GKQLPIISIRHAAEFFDYNAKYDDASTIEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMMV 254 (307)
T ss_dssp S-EEEEEEEET---TEECCCEEEEEEEEEETTEEEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred C-EEEEEEEEC---CEEeeEEEEEcCCcccChhhcCCCCCCeEecCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 7 899999863 34432222222111 223333 2223664 88999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
+ +|++||||+|||++... |.....+|+|+.++..++.
T Consensus 255 ~--~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 255 K--DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 295 (307)
T ss_dssp E--TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred E--CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHH
Confidence 9 68999999999998542 4456678999988776653
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=283.35 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=184.3
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|.. |...|+..+...++..|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (343)
T 1e4e_A 88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWV--------------- 152 (343)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEE---------------
Confidence 35789999985 45567888889999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+.+.+++. .+++|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+||+| +|++|.+
T Consensus 153 --------~~~~~~~~--~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~~lvEe~I~G-~E~~v~v 219 (343)
T 1e4e_A 153 --------INKDDRPV--AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY--DSKILIEQAVSG-CEVGCAV 219 (343)
T ss_dssp --------ECTTCCCC--GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEE
T ss_pred --------Eechhhhh--hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCcEEEEeCcCC-eEEEEEE
Confidence 22222211 1578999999999999999999999999999999887542 568999999986 8999999
Q ss_pred EEcCCCCEEEec--cccc--ccccccce---------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 288 LCDQYGNVAALH--SRDC--SVQRRHQK---------IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 288 l~D~~G~vi~l~--~Rdc--svqrr~qK---------iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
++++.+ +..+. ...+ .+.....| .....|+. ++++..+++.+.|.++++++|+.|.++|||++++
T Consensus 220 l~~~~~-~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 297 (343)
T 1e4e_A 220 LGNSAA-LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD 297 (343)
T ss_dssp EEETTC-CEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT
T ss_pred EeCCCC-eEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC
Confidence 998755 32221 1111 01111111 22345766 8889999999999999999999999999999984
Q ss_pred cCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 355 ETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 355 ~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
+|++||+|+|||++... |....++|+|+.++..++.
T Consensus 298 -~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 298 -NGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp -TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 78899999999998752 4455567999988876653
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=273.99 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=158.7
Q ss_pred cCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCC
Q 000092 1572 GTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSG 1651 (2267)
Q Consensus 1572 ~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssG 1651 (2267)
..+|.+.++..|.++ +||+|.+++ +|++|+|++||++|++||+|+.+++|+.|++++|.+.++|+|+|.||+|
T Consensus 95 ~~~l~~~~~~t~~~~-avVtG~g~I------~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsgG 167 (285)
T 2f9i_B 95 LEKIEKDQQKTGLKE-AVVTGTAQL------DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGG 167 (285)
T ss_dssp HHHHHHHHHHHCCSS-SEEEEEEEE------TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred hHHHHHHhhccCCCC-eEEEEEEEE------CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 334444444455555 599999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccc
Q 000092 1652 ARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGA 1731 (2267)
Q Consensus 1652 ARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ 1731 (2267)
|||| |++.+++||+ +.+ ....++ +.
T Consensus 168 ar~q--EGi~sl~q~a--------ki~-------~~l~~~-----------------------------------s~--- 192 (285)
T 2f9i_B 168 ARMQ--EGIISLMQMG--------KTS-------VSLKRH-----------------------------------SD--- 192 (285)
T ss_dssp CCGG--GHHHHHHHHH--------HHH-------HHHHHH-----------------------------------HH---
T ss_pred cchh--hhhhhHhHHH--------HHH-------HHHHHH-----------------------------------Hc---
Confidence 9998 9999998877 111 111111 00
Q ss_pred ccccccccccCceEEEEEcCcccchhhhh-hccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCce
Q 000092 1732 IAGAYSRAYKETFTLTYVTGRTVGIGAYL-ARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVV 1810 (2267)
Q Consensus 1732 iag~~s~a~~~iptis~vtg~~~G~gAyl-~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~ 1810 (2267)
..+|+|+++||+|+||++|. +.++|+++|.+++.|+++||+++++++|+++ ++++|++++|..+|++
T Consensus 193 ---------~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~vi~~~~~~~~---~e~~~~Ae~~~~~G~i 260 (285)
T 2f9i_B 193 ---------AGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKL---PDDFQTAEFLLEHGQL 260 (285)
T ss_dssp ---------TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHHHHTTCC
T ss_pred ---------CCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHHHHHHhcccc---hHhHhhHHHHHhcCCc
Confidence 13799999999999998666 7899999999999999999999999999988 7999999999999999
Q ss_pred EEEecCcHHHHHHHHHHHhcCC
Q 000092 1811 HLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1811 d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|.+++++ +..+.++++|+|+.
T Consensus 261 D~Iv~~~-e~r~~l~~~L~~l~ 281 (285)
T 2f9i_B 261 DKVVHRN-DMRQTLSEILKIHQ 281 (285)
T ss_dssp SEECCGG-GHHHHHHHHHHHTC
T ss_pred cEEeChH-HHHHHHHHHHHHhh
Confidence 9999855 99999999999984
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=280.56 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=185.0
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
+.++|.|+|.. |...|+..+...|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 152 (346)
T 3se7_A 88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWT--------------- 152 (346)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEE---------------
T ss_pred ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEE---------------
Confidence 45789999987 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+++.+ ...++.+|||+||||..|+||+||++|++.+|+.++++.+... +.+++||+|++| +|++|.+
T Consensus 153 --------~~~~~--~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G-~E~~v~v 219 (346)
T 3se7_A 153 --------VTADE--KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY--DSKVLIEEAVIG-TEIGCAV 219 (346)
T ss_dssp --------EETTS--CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT--CSEEEEEECCCS-EEEEEEE
T ss_pred --------EcCcH--HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC--CCcEEEEeCcCC-EEEEEEE
Confidence 11211 2345679999999999999999999999999999999987643 568999999986 8999999
Q ss_pred EEcCCCCEE-Eecccccc------cccccceEE-----EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 288 LCDQYGNVA-ALHSRDCS------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 288 l~D~~G~vi-~l~~Rdcs------vqrr~qKii-----eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
++++.+..+ .+....+. .|++..|.. ...|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 220 l~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~- 297 (346)
T 3se7_A 220 MGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTE- 297 (346)
T ss_dssp EEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECT-
T ss_pred EecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeC-
Confidence 998654222 22121111 233334433 235776 8899999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|+|||++.. .|....++|+|+.++..++
T Consensus 298 ~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 298 DGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp TSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 5789999999998853 2444557899999876554
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=273.14 Aligned_cols=233 Identities=16% Similarity=0.152 Sum_probs=183.1
Q ss_pred cCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 130 TRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 130 ~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
.++|+|+|.. |...|+..++..|+..||+++|+++.++..+.||..++++++++|||+|+|..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~---------------- 160 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHT---------------- 160 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEE----------------
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEE----------------
Confidence 5789999986 67779999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCHH----HHHHHHhhhCCc-EEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecccccee
Q 000092 209 DVYRQACVYTTE----EAIASCQVVGYP-AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHL 283 (2267)
Q Consensus 209 ~~~~~~~V~s~e----ea~~~a~~IGyP-VVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhi 283 (2267)
+.+.+ .+..+++++||| +||||..|+||+||.+|++.+||.++++.+... +.+++||+||+| +|+
T Consensus 161 -------~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 161 -------LSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY--DDRLMVEPRIRG-REI 230 (372)
T ss_dssp -------ECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT--CSCEEEEECCCS-EEE
T ss_pred -------EechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCCEEEECCCCC-EEE
Confidence 12211 244567789999 999999999999999999999999999887643 568999999986 999
Q ss_pred eEEEEEcCCCCEEEeccc-----ccccccccc--e-EEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEcc
Q 000092 284 EVQLLCDQYGNVAALHSR-----DCSVQRRHQ--K-IIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355 (2267)
Q Consensus 284 eVqvl~D~~G~vi~l~~R-----dcsvqrr~q--K-iieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~ 355 (2267)
+|.+++|+...+....+. -+..+.++. . .....|+. ++++..+++.+.|.++++++|++|.++|||++++
T Consensus 231 ~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~- 308 (372)
T 3tqt_A 231 ECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP- 308 (372)
T ss_dssp EEEEEESSSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred EEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-
Confidence 999999863211111111 011221111 1 23456776 8999999999999999999999999999999984
Q ss_pred CCcEEEeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 356 TGEYYFLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 356 ~g~~yfLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
+|++||+|||||++-. .|....++|+|++++..++
T Consensus 309 dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 309 NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 6889999999999844 3555567899998876554
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=273.49 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=181.7
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcC-CCCCCCCCCCccCCCCCcccccCc
Q 000092 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAAN-VPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 131 ~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aG-VPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++| ||+|+|... ..
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~-------------~~ 185 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVAL-------------IE 185 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEE-------------ET
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEE-------------eC
Confidence 789999965 566699999999999999999999999999999999999999999 999998750 00
Q ss_pred ccccccccCCH-HHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 209 DVYRQACVYTT-EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 209 ~~~~~~~V~s~-eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
..+. +++.++++.+||||||||..|+||+||++|++.+||.++++.+... +..++||+||+| +|++|.+
T Consensus 186 -------~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~--~~~vlVEe~I~G-~E~~v~v 255 (383)
T 3k3p_A 186 -------GEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY--DSRVLIEQGVDA-REIEVGI 255 (383)
T ss_dssp -------TSCHHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH--CSEEEEEECCCS-EEEEEEE
T ss_pred -------ccchhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC--CCeEEEEcCCCC-eEEEEEE
Confidence 1122 5677788899999999999999999999999999999999987754 468999999986 8999999
Q ss_pred EEcCCCCEEEeccc--ccccccccceE-----EEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 288 LCDQYGNVAALHSR--DCSVQRRHQKI-----IEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 288 l~D~~G~vi~l~~R--dcsvqrr~qKi-----ieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
++|+...+....++ ++.+.....|. ....|+. ++++..+++.+.|.++++++|++|.++|||++++ +|++|
T Consensus 256 l~d~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~g~~~ 333 (383)
T 3k3p_A 256 LGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVY 333 (383)
T ss_dssp EESSSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEE
T ss_pred EeCCCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-CCCEE
Confidence 99854333222221 12222222332 3456877 8999999999999999999999999999999984 68899
Q ss_pred EeeeCccCcCC----cceehhhhcCCHHHHHHHH
Q 000092 361 FLELNPRLQVE----HPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 361 fLEINpRlqge----hpvtE~vtGvDL~~~qL~i 390 (2267)
|+|+|||++.. .|.....+|+|+.++..++
T Consensus 334 vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 334 LNELNTMPGFTQWSMYPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp EEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 99999999843 3555567899998876654
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=276.71 Aligned_cols=230 Identities=19% Similarity=0.266 Sum_probs=187.2
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 131 ~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
++|.|+|.. |...|+..++..|+..|++++||++.++..+.||..++++++++|||+|+|..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~----------------- 171 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAV----------------- 171 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEE-----------------
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEE-----------------
Confidence 699999998 78889999999999999999999999999999999999999999999999875
Q ss_pred cccccccCCHHH--HHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 210 VYRQACVYTTEE--AIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 210 ~~~~~~V~s~ee--a~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+.+.++ ....++++|||+||||..|+||+||++|++.+||.++++.+... +.+++||+||+| +|++|.+
T Consensus 172 ------~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~--~~~vlVEe~I~G-~E~~v~v 242 (373)
T 3lwb_A 172 ------LRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH--DPKVIVEAAISG-RELECGV 242 (373)
T ss_dssp ------ECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT--CSSEEEEECCEE-EEEEEEE
T ss_pred ------EECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc--CCCEEEeCCCCC-eEEEEEE
Confidence 122111 12236789999999999999999999999999999999988754 568999999986 8999999
Q ss_pred EEcCCCC--EEEecccccc--------cccccceEE-----EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEE
Q 000092 288 LCDQYGN--VAALHSRDCS--------VQRRHQKII-----EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLY 352 (2267)
Q Consensus 288 l~D~~G~--vi~l~~Rdcs--------vqrr~qKii-----eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~ 352 (2267)
++++.+. +....+..+. +.+...|.. ...|+. +++++.+++++.|.++++++|++|.++|||++
T Consensus 243 l~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~ 321 (373)
T 3lwb_A 243 LEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 321 (373)
T ss_dssp EECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred EECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEE
Confidence 9998663 3222222222 333333332 235776 89999999999999999999999999999999
Q ss_pred EccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHH
Q 000092 353 SMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVA 389 (2267)
Q Consensus 353 d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~ 389 (2267)
++ +|. ||+|||||++... |....++|+|++++..+
T Consensus 322 ~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~ 360 (373)
T 3lwb_A 322 TD-DGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLAT 360 (373)
T ss_dssp ET-TEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHH
T ss_pred EC-CCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHH
Confidence 94 567 9999999998542 44445789998776544
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=268.34 Aligned_cols=231 Identities=22% Similarity=0.261 Sum_probs=189.3
Q ss_pred HcCCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++|+|+|+. |...|+..+...|+..|++++||+++++..+.||..++++++++|||+|+|..
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~--------------- 138 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVA--------------- 138 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEE---------------
Confidence 56799999987 77889888999999999999999999999999999999999999999999865
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEE
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqv 287 (2267)
+.+.++ +.. ++|||+||||..|+||+|+.+|++.+|+.++++.+... +.+++||+|++|.+|++|.+
T Consensus 139 --------~~~~~~--~~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~--~~~vlvEe~I~G~~E~~v~v 205 (322)
T 2fb9_A 139 --------VRKGEP--PVV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRY--DEKAVVEKALSPVRELEVGV 205 (322)
T ss_dssp --------EETTSC--CCC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT--CSEEEEEECCSSCEEEEEEE
T ss_pred --------EECchh--hhh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc--CCeEEEEeCCCCCeeEEEEE
Confidence 111111 112 68999999999999999999999999999999887643 46899999998768999999
Q ss_pred EEcCCCCEEEecccc--cccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEE
Q 000092 288 LCDQYGNVAALHSRD--CSVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYY 360 (2267)
Q Consensus 288 l~D~~G~vi~l~~Rd--csvqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~y 360 (2267)
++++.++++...... +.+.+...|... ..|+. ++++..+++++.|.++++++|+.|.++|||+++ +|++|
T Consensus 206 l~~~~~~~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~g~~~ 282 (322)
T 2fb9_A 206 LGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELY 282 (322)
T ss_dssp ESSSSCEEEEEEEEEEECCEEETTTEEECCEEEEESSCC-CCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE--TTEEE
T ss_pred EeCCCceEeeeEEEeeCCCccCHHHcccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE--CCcEE
Confidence 988765555444332 223344444432 35776 788899999999999999999999999999998 78999
Q ss_pred EeeeCccCcCCc----ceehhhhcCCHHHHHHHH
Q 000092 361 FLELNPRLQVEH----PVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 361 fLEINpRlqgeh----pvtE~vtGvDL~~~qL~i 390 (2267)
|+|+|||++... |....++|+|++++..++
T Consensus 283 vlEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 283 LNELNTIPGFTPTSMYPRLFEAGGVAYPELLRRL 316 (322)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEECCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 999999998752 333457899988886654
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-25 Score=260.78 Aligned_cols=270 Identities=14% Similarity=0.151 Sum_probs=193.0
Q ss_pred EEEECc--hHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 51 ILIANN--GMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 51 VLIan~--G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
|+|++. +..+..++++++++|++++ +. |.+.... ..+|. + ..
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~-----------~~--~~~~~~~--~~~~~------------~---------~~ 45 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYK-----------KV--YVPALPM--VLGER------------P---------KE 45 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEE-----------EE--EGGGCCE--ETTBC------------C---------GG
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEE-----------EE--ehhhcee--eccCC------------C---------cc
Confidence 677774 6788899999999999985 22 2111111 12221 1 11
Q ss_pred HcCCC-EEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccC
Q 000092 129 MTRVD-AVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIP 207 (2267)
Q Consensus 129 ~~~vD-aV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~ 207 (2267)
..++| ++++.+|.. ++..++..+++.|+++++ +++++..+.||..++++++++|||+|+|..
T Consensus 46 ~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~--------------- 108 (280)
T 1uc8_A 46 LEGVTVALERCVSQS-RGLAAARYLTALGIPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTAL--------------- 108 (280)
T ss_dssp GTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEEE---------------
T ss_pred cCCCCEEEECCccch-hhHHHHHHHHHCCCceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeEe---------------
Confidence 24689 788876622 455677888889999985 599999999999999999999999999876
Q ss_pred cccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHH--HhhCCCCcEEEEEeccc-cceee
Q 000092 208 DDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV--QGEVPGSPIFIMKVASQ-SRHLE 284 (2267)
Q Consensus 208 ~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~--~~e~~~~~I~VEeyI~g-~rhie 284 (2267)
+.+.+++.++++++|||+|+||..|+||+||+++++.+++.++++.+ .......++++|+|+++ +++++
T Consensus 109 --------~~~~~~~~~~~~~~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~ 180 (280)
T 1uc8_A 109 --------ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIR 180 (280)
T ss_dssp --------ESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEE
T ss_pred --------eCCHHHHHHHHHHhCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEE
Confidence 67888998889999999999999999999999999999999988776 22223568999999997 56777
Q ss_pred EEEEEcCCCCEEEeccccccccccc-ceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEee
Q 000092 285 VQLLCDQYGNVAALHSRDCSVQRRH-QKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLE 363 (2267)
Q Consensus 285 Vqvl~D~~G~vi~l~~Rdcsvqrr~-qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLE 363 (2267)
+.++. |.++....|...-.+.+ ...-...|.. ++ +++.+.+.++++++|+ |.+++||++++ +++||+|
T Consensus 181 v~v~~---~~~~~~~~~~~~~~~~~~~~g~~~~p~~-l~----~~~~~~~~~~~~~lg~-g~~~vD~~~~~--~g~~~iE 249 (280)
T 1uc8_A 181 VFVVG---ERAIAAIYRRSAHWITNTARGGQAENCP-LT----EEVARLSVKAAEAVGG-GVVAVDLFESE--RGLLVNE 249 (280)
T ss_dssp EEEET---TEEEEEEEC--------------CEECC-CC----HHHHHHHHHHHHHTTC-SEEEEEEEEET--TEEEEEE
T ss_pred EEEEC---CEEEEEEEEecCCccccccCCccccCCC-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEeC--CCeEEEE
Confidence 77663 44544332210000000 0000112433 33 3889999999999999 99999999994 3599999
Q ss_pred eCccCcCCcceehhhhcCCHHHHHHHHHcCC
Q 000092 364 LNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394 (2267)
Q Consensus 364 INpRlqgehpvtE~vtGvDL~~~qL~iA~G~ 394 (2267)
+|||++..+ ++..+|+|++++.+++++|.
T Consensus 250 iN~r~g~~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 250 VNHTMEFKN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp EETTCCCTT--HHHHHCCCHHHHHHHHHHHT
T ss_pred EeCCCCccc--hheeeccCHHHHHHHHHHhh
Confidence 999998765 57789999999999998874
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=269.25 Aligned_cols=223 Identities=17% Similarity=0.194 Sum_probs=173.7
Q ss_pred HhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCC---------CCCCcCcccccccCCCCCcee
Q 000092 1518 LARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADD---------SGTWGTPLVLVERSPGLNNIG 1588 (2267)
Q Consensus 1518 ~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~---------~g~~~~~l~~~~r~~g~n~~g 1588 (2267)
.++..+..++.|.+++| .. .-+|.|+.-+.. +..|..+|.+.++.+|.+++
T Consensus 48 ~~~~~~r~~arerI~~L----------------~D---~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~t~~~~a- 107 (304)
T 2f9y_B 48 KCDHHMRMTARNRLHSL----------------LD---EGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDA- 107 (304)
T ss_dssp TTCCBCCCCHHHHHHHH----------------SC---SSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSS-
T ss_pred CCCCCCCCCHHHHHHHH----------------CC---CCcEEEECCccccCCccccccccChHHHHHHHHhccCCCCc-
Confidence 46777777777777777 11 225666643210 13466678888888887665
Q ss_pred EEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccccc
Q 000092 1589 MVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGW 1668 (2267)
Q Consensus 1589 mv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v~w 1668 (2267)
||+|.+++ +|++|+|++||+||++||||+...+|+.+++++|.+.++|+|+|.++|||||+ |++.++++++
T Consensus 108 vvtG~g~i------~G~~V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarlq--eg~~~l~~~~- 178 (304)
T 2f9y_B 108 LVVMKGTL------YGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQ--EALMSLMQMA- 178 (304)
T ss_dssp EEEEECEE------TTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGG--GTHHHHHHHH-
T ss_pred EEEEEEEE------CCEEEEEEEEcCccccCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCHH--HHHHHHHHHH-
Confidence 99999877 99999999999999999999999999999999999999999999999999998 6654443222
Q ss_pred cCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEEEE
Q 000092 1669 TDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTLTY 1748 (2267)
Q Consensus 1669 ~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~iptis~ 1748 (2267)
++...+. .++ -..+|+|++
T Consensus 179 ---------------------~i~~al~----------------------------~~~------------~~~vP~Iav 197 (304)
T 2f9y_B 179 ---------------------KTSAALA----------------------------KMQ------------ERGLPYISV 197 (304)
T ss_dssp ---------------------HHHHHHH----------------------------HHH------------HTTCCEEEE
T ss_pred ---------------------HHHHHHH----------------------------HHh------------cCCCCEEEE
Confidence 2110000 000 113799999
Q ss_pred EcCcccchh-hhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCceEEEecCcHHHHHHHHHH
Q 000092 1749 VTGRTVGIG-AYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1749 vtg~~~G~g-Ayl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
|+|+|+||| +.++.+||++||.+++.|+++||+++.+++|+++ .+++|+++.+..+|++|.++++ .+..+.++++
T Consensus 198 V~G~~~GGg~a~~a~~~D~via~~~A~i~v~Gp~~i~~~ig~~l---~~~~~~Ae~~~~~Glvd~Vv~~-~el~~~l~~l 273 (304)
T 2f9y_B 198 LTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PPGFQRSEFLIEKGAIDMIVRR-PEMRLKLASI 273 (304)
T ss_dssp EEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHHGGGTCCSEECCH-HHHHHHHHHH
T ss_pred EECCCccHHHHHHHhcCCEEEEeCCcEEEeecHHHHHHHhCccC---CcccCCHHHHHhcCCccEEeCc-HHHHHHHHHH
Confidence 999999999 4458889999999999999999999999999987 4899999999999999999964 6899999999
Q ss_pred HhcCCCC
Q 000092 1828 LSYVPPH 1834 (2267)
Q Consensus 1828 LsylP~~ 1834 (2267)
|+|+|..
T Consensus 274 l~~l~~~ 280 (304)
T 2f9y_B 274 LAKLMNL 280 (304)
T ss_dssp HHHHTTC
T ss_pred HHHhhcC
Confidence 9999863
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=254.78 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=182.8
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~---~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.||||+|+| .+..++++++++|++++ ++ |.+.+.+ ....+|+.+.++. |.+ +.
T Consensus 3 m~Ililg~g-~~~~l~~a~~~~G~~v~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~------~~d-~~--- 58 (334)
T 2r85_A 3 VRIATYASH-SALQILKGAKDEGFETI-----------AF--GSSKVKPLYTKYFPVADYFIEEK------YPE-EE--- 58 (334)
T ss_dssp SEEEEESST-THHHHHHHHHHTTCCEE-----------EE--SCGGGHHHHHTTSCCCSEEECSS------CCH-HH---
T ss_pred eEEEEECCh-hHHHHHHHHHhCCCEEE-----------EE--ECCCCCcccccccccCceEecCC------cCh-HH---
Confidence 389999999 99999999999999986 34 2222223 4557788877642 323 22
Q ss_pred HHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 126 MAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
+++ .+|.|+|+.++... ...+.|++.|++++ |+++++..+.||..++++++++|||+|+| .
T Consensus 59 l~~--~~d~i~~~~e~~~~--~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~-~------------- 119 (334)
T 2r85_A 59 LLN--LNAVVVPTGSFVAH--LGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV-Y------------- 119 (334)
T ss_dssp HHH--TTEEECCCTTHHHH--HCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB-C-------------
T ss_pred hcc--cCCEEEECcchhhh--hHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc-c-------------
Confidence 232 35888877332211 12345677899876 56799999999999999999999999997 3
Q ss_pred cCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh---CCCCcEEEEEeccccce
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE---VPGSPIFIMKVASQSRH 282 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e---~~~~~I~VEeyI~g~rh 282 (2267)
.+. +.++||+||||..|+||+||++|++.+|+..+++.+... ....+++||+|++| .+
T Consensus 120 -----------~~~-------~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e 180 (334)
T 2r85_A 120 -----------EDP-------DDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VP 180 (334)
T ss_dssp -----------SCG-------GGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EE
T ss_pred -----------CCh-------HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ce
Confidence 111 135799999999999999999999999999999887643 12468999999988 57
Q ss_pred eeEEEEEcCCCC-EEEe--ccc-------ccccc--ccc----ceEEEec---CCCCCCHHHHHHHHHHHHHHHHHc---
Q 000092 283 LEVQLLCDQYGN-VAAL--HSR-------DCSVQ--RRH----QKIIEEG---PITVAPLETVKKLEQAARRLAKCV--- 340 (2267)
Q Consensus 283 ieVqvl~D~~G~-vi~l--~~R-------dcsvq--rr~----qKiieea---Pa~~l~~e~~~eL~~~A~rla~aL--- 340 (2267)
+++.++.+..++ +-.+ .+| .|... +.. ....... |+. ++++..+++.+.+.++++++
T Consensus 181 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~-l~~~~~~~i~~~a~~~~~~l~~~ 259 (334)
T 2r85_A 181 VYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV-LRESLLMDVIEAGERVVKAAEEL 259 (334)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccCCceeeeCCCCcc-cCHHHHHHHHHHHHHHHHHHHhh
Confidence 787776653332 1111 111 01000 000 0001112 665 77888899999999999999
Q ss_pred --CceeeeEEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 341 --NYVGAATVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 341 --Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
++.|.+++||++++ +|++||+|+|||+++..
T Consensus 260 ~~~~~G~~~vd~~~~~-~g~~~viEiN~R~g~~~ 292 (334)
T 2r85_A 260 MGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGT 292 (334)
T ss_dssp SSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGG
T ss_pred cccccccEEEEEEECC-CCCEEEEEEeCCcCCCc
Confidence 89999999999983 67899999999999854
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=259.08 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=182.7
Q ss_pred CCCEEEeCC-CcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcc
Q 000092 131 RVDAVWPGW-GHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDD 209 (2267)
Q Consensus 131 ~vDaV~pG~-G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~ 209 (2267)
++|+|+|.. |...|+..++..|+..|++++|++++++..+.||..++++++++|||+|+|..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~----------------- 169 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVL----------------- 169 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEE-----------------
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEE-----------------
Confidence 689999975 55678888999999999999999999999999999999999999999999865
Q ss_pred cccccccCCHH--HHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceee-EE
Q 000092 210 VYRQACVYTTE--EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLE-VQ 286 (2267)
Q Consensus 210 ~~~~~~V~s~e--ea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhie-Vq 286 (2267)
+.+.+ ++.+ ++.+|||+||||..|+||+|+.+|++.+||.++++.+... +.+++||+|++|.+|++ +.
T Consensus 170 ------~~~~~~~~~~~-~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~--~~~vlVEe~I~G~~E~svi~ 240 (367)
T 2pvp_A 170 ------LNEKNRANALD-LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY--SKEVLIEPFIQGVKEYNLAG 240 (367)
T ss_dssp ------ECTTTGGGHHH-HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT--CSCEEEEECCTTCEEEEEEE
T ss_pred ------EeCCchHHHHH-HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc--CCcEEEEeCCCCCceeeEEE
Confidence 23333 5555 6789999999999999999999999999999999887643 56899999998768955 44
Q ss_pred EEEcCCCCEEEeccccc---ccccccceEEE-----ecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCc
Q 000092 287 LLCDQYGNVAALHSRDC---SVQRRHQKIIE-----EGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGE 358 (2267)
Q Consensus 287 vl~D~~G~vi~l~~Rdc---svqrr~qKiie-----eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~ 358 (2267)
+..+ |+++....+-. .+.....|... ..|+. ++++..+++++.|.++++++|+.|.++|||+++ +|+
T Consensus 241 v~v~--g~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~g~ 315 (367)
T 2pvp_A 241 CKIK--KDFCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENE 315 (367)
T ss_dssp EEET--TEEEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--TTE
T ss_pred EEEC--CEEEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--CCe
Confidence 4443 55443322111 11122233322 34665 889999999999999999999999999999998 789
Q ss_pred EEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 359 YYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 359 ~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+||+|+|||++.+. .+ +.. |++++..++..+.++.
T Consensus 316 ~~vlEiN~rpg~t~-~s-~~p--~~~~l~~~li~~~~~~ 350 (367)
T 2pvp_A 316 VYLNEINPIPGSLA-NY-LFD--DFKTTLENLAQSLPKT 350 (367)
T ss_dssp EEEEEEESSCGGGG-GG-GSS--SHHHHHHHHHHHCC--
T ss_pred EEEEEEeCCCCCCc-cc-ccC--CHHHHHHHHHhCcccc
Confidence 99999999998742 11 112 8999999988886664
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=250.57 Aligned_cols=279 Identities=13% Similarity=0.175 Sum_probs=192.8
Q ss_pred hHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccC
Q 000092 34 EVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPG 110 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~---~vr~ADe~v~vp~ 110 (2267)
.+.++++...-.+ .+|+|+|+| .+..++++++++||+|+ ++ |.+.+++ ....||+++.++
T Consensus 6 ~~~~~~~~~~~~~--~~I~ilGs~-l~~~l~~aAk~lG~~vi-----------~v--d~~~~~p~~~~~~~ad~~~~~d- 68 (361)
T 2r7k_A 6 EILEIFDKYNKDE--ITIATLGSH-TSLHILKGAKLEGFSTV-----------CI--TMKGRDVPYKRFKVADKFIYVD- 68 (361)
T ss_dssp HHHHHHTTSCTTS--CEEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTSCHHHHHTTCCSEEEECS-
T ss_pred HHHHHHHhccccC--CEEEEECcH-HHHHHHHHHHHCCCEEE-----------EE--ECCCCCCcccccccCceEEECC-
Confidence 3456665533222 359999999 89999999999999986 44 3334455 677899999884
Q ss_pred CCCCCCccCH--HHHHHHHHHcCCCEEEeCCCcCCCCCc--hHHHHH-HcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCC
Q 000092 111 GTNNNNYANV--QLIVEMAEMTRVDAVWPGWGHASEIPE--LPDTLS-TKGIIFLGPPATSMAALGDKIGSSLIAQAANV 185 (2267)
Q Consensus 111 ~~~~~~Y~dv--d~Il~iA~~~~vDaV~pG~G~~sEn~~--la~~l~-~~GI~fiGPs~eam~~lgDK~~~k~laq~aGV 185 (2267)
.|.|. +.+++.+++.+ +.|.|- + +... ....++ +.|++++| +..+++..+||..++++++++||
T Consensus 69 -----~~~d~~~~~~l~~l~~~~-~vV~pe--~--~~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GI 137 (361)
T 2r7k_A 69 -----NFSDIKNEEIQEKLRELN-SIVVPH--G--SFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGL 137 (361)
T ss_dssp -----SGGGGGSHHHHHHHHHTT-EEECCB--H--HHHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTC
T ss_pred -----CcccccHHHHHHHHHHcC-CEEEeC--c--hhhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCc
Confidence 35452 55556655554 554432 1 1111 112334 78998886 88999999999999999999999
Q ss_pred CCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhh
Q 000092 186 PTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE 265 (2267)
Q Consensus 186 Ptpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e 265 (2267)
|||+|.. +.++ ++||+||||..++||||+++|+|.+|+.++++.+...
T Consensus 138 ptp~~~~-------------------------~~~e-------~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~ 185 (361)
T 2r7k_A 138 RVPKKYE-------------------------SPED-------IDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKR 185 (361)
T ss_dssp CCCCEES-------------------------SGGG-------CCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHT
T ss_pred CCCCEeC-------------------------CHHH-------cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc
Confidence 9998632 2222 2699999999999999999999999999999877532
Q ss_pred C-----CCCcEEEEEeccccceeeEEEEEcCCCC---EEEeccc-----c--cccccccc--------eEE-EecCCCCC
Q 000092 266 V-----PGSPIFIMKVASQSRHLEVQLLCDQYGN---VAALHSR-----D--CSVQRRHQ--------KII-EEGPITVA 321 (2267)
Q Consensus 266 ~-----~~~~I~VEeyI~g~rhieVqvl~D~~G~---vi~l~~R-----d--csvqrr~q--------Kii-eeaPa~~l 321 (2267)
. .+.+++||+|++|. ++++..+..--.+ ++.+..| | |.+..+.| .++ ...|+. +
T Consensus 186 ~~~~~~~~~~viIEEfl~G~-e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~-l 263 (361)
T 2r7k_A 186 GILTDEDIANAHIEEYVVGT-NFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV-I 263 (361)
T ss_dssp TSCCHHHHHHCEEEECCCSE-EEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC-C
T ss_pred cccccCCCCeEEEEeccceE-EeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc-C
Confidence 1 12479999999984 5576555542222 2222111 1 10100001 111 122776 7
Q ss_pred CHHHHHHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCCccee
Q 000092 322 PLETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVT 375 (2267)
Q Consensus 322 ~~e~~~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvt 375 (2267)
++++.+++.+.+.++++++ |+.|+.++||++++ +|+++|+|||||++|..++.
T Consensus 264 ~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg~i~V~EIapR~gGg~~~~ 322 (361)
T 2r7k_A 264 RESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSF 322 (361)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CCCEEEEEEcCCCCCCcccc
Confidence 8888999999999999999 89999999999983 67899999999999984433
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=234.67 Aligned_cols=217 Identities=17% Similarity=0.111 Sum_probs=163.2
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCC
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGS 193 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~ 193 (2267)
++| .+.+.+++++ +|.+++. +|.......+.+.++..| .++|+++++++.+.||..+++++++ |||+|+|..
T Consensus 57 ~df--~~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~- 129 (305)
T 3df7_A 57 VDS--MDSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL- 129 (305)
T ss_dssp BCC--GGGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-
T ss_pred cCH--HHHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-
Confidence 355 4567777754 5776654 222222222345555567 7999999999999999999999999 999999653
Q ss_pred CccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEE
Q 000092 194 HVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFI 273 (2267)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~V 273 (2267)
..++||+|+||..|+||+||+++++ .+.++++
T Consensus 130 ---------------------------------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lv 161 (305)
T 3df7_A 130 ---------------------------------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIA 161 (305)
T ss_dssp ---------------------------------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEE
T ss_pred ---------------------------------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEE
Confidence 2478999999999999999999998 3568999
Q ss_pred EEeccccceeeEEEEEcCCCCEEEeccccccccccc-ceE-EEecCCCCCCHHHHHHHHHHHHHHHHHc-CceeeeEEEE
Q 000092 274 MKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRH-QKI-IEEGPITVAPLETVKKLEQAARRLAKCV-NYVGAATVEY 350 (2267)
Q Consensus 274 EeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~-qKi-ieeaPa~~l~~e~~~eL~~~A~rla~aL-Gy~Ga~tVEf 350 (2267)
|+|++| +|++|.+++++ .+..+... .+... .+. ....|+. ++++..+++.+.|.++++++ |+.|.+++||
T Consensus 162 Ee~I~G-~e~sv~v~~g~--~~~~~~~~---~~~~~~~~~~g~~~p~~-l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~ 234 (305)
T 3df7_A 162 QEFIEG-INLSVSLAVGE--DVKCLSVN---EQIINNFRYAGAVVPAR-ISDEVKREVVEEAVRAVECVEGLNGYVGVDI 234 (305)
T ss_dssp EECCCS-EEEEEEEEESS--SEEEEEEE---EEEEETTEEEEEEESCC-CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred EeccCC-cEEEEEEEeCC--eEEEEEEe---eEeccCceeccccccCC-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEE
Confidence 999986 89999999853 44433211 11111 111 2245665 78899999999999999999 9999999999
Q ss_pred EEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 351 LYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 351 l~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
+++ |++||+|+|||+++++...+.++|+|+.++++++ +.+.+.
T Consensus 235 ~~~---~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~ 277 (305)
T 3df7_A 235 VYS---DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG--EVKHVR 277 (305)
T ss_dssp EES---SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC--CCCCCC
T ss_pred EEC---CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc--cCCCCc
Confidence 995 6799999999999998777889999999999988 554444
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-22 Score=241.48 Aligned_cols=249 Identities=10% Similarity=0.109 Sum_probs=169.1
Q ss_pred EEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCCh---hhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 50 SILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAE---HIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 50 kVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~---~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
+|.|+|+| .|+.++++|+++|++|+ ++ |.+.+++ ....||+++.++. |.| +
T Consensus 4 ~I~~lGsg-l~~~~~~aAk~lG~~vi-----------v~--d~~~~~p~~~a~~~ad~~~~~~~------~~d------l 57 (320)
T 2pbz_A 4 IVSTIASH-SSLQILLGAKKEGFKTR-----------LY--VSPKRRPFYSSLPIVDDLVVAEE------MTS------I 57 (320)
T ss_dssp CEEEESST-THHHHHHHHHHTTCCEE-----------EE--ECTTTHHHHHTCTTCSEEEECSC------SCC------T
T ss_pred EEEEEcCH-hHHHHHHHHHHCCCEEE-----------EE--ECCCCCccchhhhcCCeEEECCc------HHH------H
Confidence 49999999 99999999999999996 44 4445555 7789999998842 444 2
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCccccc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTI 206 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v 206 (2267)
+ ...|.|.|-..+... ...+.|++.|+++. |+.+++....||...+++++++|||+|+|..
T Consensus 58 ~--~~~dvitpe~e~v~~--~~l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~-------------- 118 (320)
T 2pbz_A 58 L--NDDGIVVPHGSFVAY--LGIEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVVE-------------- 118 (320)
T ss_dssp T--CCSSBCCCBTTHHHH--SCHHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC--------------
T ss_pred H--hcCCEEEecccchhH--HHHHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC--------------
Confidence 2 234777655332211 12345677888765 7889999999999999999999999999753
Q ss_pred CcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEE
Q 000092 207 PDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQ 286 (2267)
Q Consensus 207 ~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVq 286 (2267)
+++ + +++|||||||..|+||||+++++| +|+..+++.+. .+++||+|++|.+. .+.
T Consensus 119 ~ee------------~-----~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~-----~~~IiEEfI~g~~~-~~~ 174 (320)
T 2pbz_A 119 PED------------A-----KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTLE-----EPYRVERFIPGVYL-YVH 174 (320)
T ss_dssp SCC------------C-----CSSCCEEEECC------------C-EECSCCCC---------CCEEEECCCSCEE-EEE
T ss_pred HhH------------c-----CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcC-----CCEEEEeeeceEec-cee
Confidence 111 1 489999999999999999999999 99987665441 47999999998654 666
Q ss_pred EEEc-CCCCEEEecccccccccccc----------eEEEecCCCCCCHHHHHHHHHHHHHHHHHc------CceeeeEEE
Q 000092 287 LLCD-QYGNVAALHSRDCSVQRRHQ----------KIIEEGPITVAPLETVKKLEQAARRLAKCV------NYVGAATVE 349 (2267)
Q Consensus 287 vl~D-~~G~vi~l~~Rdcsvqrr~q----------KiieeaPa~~l~~e~~~eL~~~A~rla~aL------Gy~Ga~tVE 349 (2267)
++.+ -.|++..++.++....+... -+....|+. +++++.+++.+.+.++++++ |+.|+.+||
T Consensus 175 ~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~P~~-~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE 253 (320)
T 2pbz_A 175 FFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA-LRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH 253 (320)
T ss_dssp EEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEECE-ECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE
T ss_pred EEeccccCceeEEEecceEEEECCeeecccCCCceeeecCCCCc-cCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE
Confidence 6655 34555444333211001110 011112665 67778899999999999999 999999999
Q ss_pred EEEEccCCcEEEeeeCccCcCC
Q 000092 350 YLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 350 fl~d~~~g~~yfLEINpRlqge 371 (2267)
++ +++++||+|||||++|+
T Consensus 254 --~~-~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 254 --FA-YDGSFKAIGIASRIDGG 272 (320)
T ss_dssp --EE-CSSSCEEEEEESSBCSG
T ss_pred --Ec-CCCcEEEEEecCCCCCC
Confidence 45 36789999999999887
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-20 Score=220.11 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=155.5
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceecccc---------------------------ccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------------------WARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------------------~a~~vVtG~ 1901 (2267)
.++|. .++++|++|+. |||+|||.|+... ++++||||+
T Consensus 44 ~v~~~~~~~~r~~arerI~~-----------L~D~gsF~E~~~~~~~~~~~~f~d~~~y~~~l~~~~~~t~~~~avvtG~ 112 (304)
T 2f9y_B 44 EVCPKCDHHMRMTARNRLHS-----------LLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMK 112 (304)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------HSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHH-----------HCCCCcEEEECCccccCCccccccccChHHHHHHHHhccCCCCcEEEEE
Confidence 45653 78899999997 8999999999763 569999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||+|+++|++++ ||++++..++|++|+++.|.++++|+|+|.|++|+..
T Consensus 113 g~i~G~~V~v~a~d~~~~---------------------ggslg~~~~~Ki~r~~e~A~~~~~PvI~l~~sGGarl---- 167 (304)
T 2f9y_B 113 GTLYGMPVVAAAFEFAFM---------------------GGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARM---- 167 (304)
T ss_dssp CEETTEECBEEEECTTST---------------------TTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCG----
T ss_pred EEECCEEEEEEEEcCccc---------------------cCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCCCcCH----
Confidence 999999999999998876 8999999999999999999999999999999999655
Q ss_pred hhhch--HHHHHHHHHHHh---cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcch
Q 000092 1982 LFEGI--LQAGSTIVENLR---TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056 (2267)
Q Consensus 1982 e~~gi--lk~ga~iv~al~---~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~ 2056 (2267)
++++ +..+++++.++. +..+|+|++|. |.+.||+...++. ..|+ ++|+|+|++++++|+.+..+..+.
T Consensus 168 -qeg~~~l~~~~~i~~al~~~~~~~vP~IavV~--G~~~GGg~a~~a~--~~D~--via~~~A~i~v~Gp~~i~~~ig~~ 240 (304)
T 2f9y_B 168 -QEALMSLMQMAKTSAALAKMQERGLPYISVLT--DPTMGGVSASFAM--LGDL--NIAEPKALIGFAGPRVIEQTVREK 240 (304)
T ss_dssp -GGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGGG--CCSE--EEECTTCBEESSCHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE--CCCccHHHHHHHh--cCCE--EEEeCCcEEEeecHHHHHHHhCcc
Confidence 3332 335677777774 45999999998 7888887433221 2488 999999999999997775443211
Q ss_pred hhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2057 ~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
.+ +...++..+.+.|+||.|++.
T Consensus 241 ---------------------------l~------------------------------~~~~~Ae~~~~~Glvd~Vv~~ 263 (304)
T 2f9y_B 241 ---------------------------LP------------------------------PGFQRSEFLIEKGAIDMIVRR 263 (304)
T ss_dssp ---------------------------CC------------------------------TTTTBHHHHGGGTCCSEECCH
T ss_pred ---------------------------CC------------------------------cccCCHHHHHhcCCccEEeCc
Confidence 00 012367888899999999999
Q ss_pred cchHHHHHHHHHH
Q 000092 2137 DKSRSFFCRRLRR 2149 (2267)
Q Consensus 2137 ~~~R~~~~~~L~r 2149 (2267)
+++|..+...|+.
T Consensus 264 ~el~~~l~~ll~~ 276 (304)
T 2f9y_B 264 PEMRLKLASILAK 276 (304)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877766544443
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=230.44 Aligned_cols=240 Identities=14% Similarity=0.055 Sum_probs=183.1
Q ss_pred cCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe-------CCCHHHHHHhcCHHHHHHHHHHcCCCCCCC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL-------GPPATSMAALGDKIGSSLIAQAANVPTLPW 190 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi-------GPs~eam~~lgDK~~~k~laq~aGVPtpp~ 190 (2267)
.+.+.|+++|++.++|+++.| ++..|.+.+...++.++ ||+..++..++||..+|++++++|||||+|
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg-----~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~ 507 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD-----ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQS 507 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCE
T ss_pred CCHHHHHHHHHHhCCCEEEEC-----CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCE
Confidence 468899999999999999755 55556655555555554 456799999999999999999999999998
Q ss_pred CCCCccCCCCCcccccCcccccccccCCHHHHHHHH-hhhCCcEEEeecCCCCCcCeEEE----CCHHHHHHHHHHHHhh
Q 000092 191 SGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKV----HNDDEVRALFKQVQGE 265 (2267)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V----~s~eEL~~a~~~~~~e 265 (2267)
.. +.+.+++.+.+ +.+||||||||..|+||+||+++ ++.+++.++++.+...
T Consensus 508 ~~-----------------------~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 508 VE-----------------------FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp EE-----------------------ESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred EE-----------------------ECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 76 67888887776 78999999999999999999999 8999999999887754
Q ss_pred CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccc-c------------------ccc---cc-------------
Q 000092 266 VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCS-V------------------QRR---HQ------------- 310 (2267)
Q Consensus 266 ~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcs-v------------------qrr---~q------------- 310 (2267)
+..++||+|++| +|++|.+++ |.++....|... + .+| |.
T Consensus 565 --~~~vlVEefI~G-~Ei~v~Vlg---gkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~ 638 (757)
T 3ln7_A 565 --DKEVMVEDYLVG-TEYRFFVLG---DETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQ 638 (757)
T ss_dssp --CSSEEEEECCCS-EEEEEEEET---TEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHH
T ss_pred --CCcEEEEEcCCC-cEEEEEEEC---CEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHH
Confidence 568999999987 899999985 467766555321 0 011 00
Q ss_pred ------------------eEE--------EecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc-------cCC
Q 000092 311 ------------------KII--------EEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETG 357 (2267)
Q Consensus 311 ------------------Kii--------eeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~-------~~g 357 (2267)
++. ..+-+...+.++.+++.+.|.++++++|+. .+.||++.+. +.+
T Consensus 639 ~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~ 717 (757)
T 3ln7_A 639 LQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLT 717 (757)
T ss_dssp HHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTT
T ss_pred HHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCC
Confidence 000 001112234456678999999999999985 7889999862 235
Q ss_pred cEEEeeeCccCcCC-cceehhhhcCCHHHHHHHHHc
Q 000092 358 EYYFLELNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 358 ~~yfLEINpRlqge-hpvtE~vtGvDL~~~qL~iA~ 392 (2267)
++.+||+|++++-. |...-..+|.|+....+....
T Consensus 718 ~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~lf 753 (757)
T 3ln7_A 718 SWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLF 753 (757)
T ss_dssp TCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHHC
T ss_pred CeEEEEEcCCcchhhhhccccCCCCchHHHHHHHhc
Confidence 78999999999854 332223578999999888765
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=201.09 Aligned_cols=284 Identities=11% Similarity=0.053 Sum_probs=178.7
Q ss_pred EEEEECch--------HHHHHHHHHHHHcCCcccccccceeEEEEEe-ccCCCCCChhhhhccE-EEEccCCCCCCCccC
Q 000092 50 SILIANNG--------MAAVKFIRSIRTWAYETFGTEKAILLVAMAT-PEDMRINAEHIRIADQ-FVEVPGGTNNNNYAN 119 (2267)
Q Consensus 50 kVLIan~G--------~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t-~~D~~~~a~~vr~ADe-~v~vp~~~~~~~Y~d 119 (2267)
||+|+..| ..+..++++++++||+++ .+ +.+.... .....++. .+.+++ ....|..
T Consensus 3 ~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~-----------~~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 68 (316)
T 1gsa_A 3 KLGIVMDPIANINIKKDSSFAMLLEAQRRGYELH-----------YMEMGDLYLI-NGEARAHTRTLNVKQ--NYEEWFS 68 (316)
T ss_dssp EEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEE-----------EECGGGEEEE-TTEEEEEEEEEEECS--CSSCCEE
T ss_pred eEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEE-----------EEchhHeEEE-CCeEEEEEeeeEecc--Cccccee
Confidence 67777766 356889999999999986 33 2111100 00001221 222321 1112211
Q ss_pred --HHHHHHHHHHcCCCEEEeCCCcCCC-----CCchHHHHHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCC
Q 000092 120 --VQLIVEMAEMTRVDAVWPGWGHASE-----IPELPDTLSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSG 192 (2267)
Q Consensus 120 --vd~Il~iA~~~~vDaV~pG~G~~sE-----n~~la~~l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~ 192 (2267)
.+.++ ...++|+|++..+...+ ...+.+.++..|++++ ++++++..+.||..++++++ |+|+|..
T Consensus 69 ~~~~~~~---~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~ 140 (316)
T 1gsa_A 69 FVGEQDL---PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLV 140 (316)
T ss_dssp EEEEEEE---EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEE
T ss_pred ccCcccc---ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEE
Confidence 00011 11368999986543211 1134566667898876 78999999999999999988 9999765
Q ss_pred CCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEEC-CHHHHHHHHHHHHhhCCCCcE
Q 000092 193 SHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH-NDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~-s~eEL~~a~~~~~~e~~~~~I 271 (2267)
+.+.+++.++++++| |+|+||..|+||+||++++ +.+++..+++.... ....++
T Consensus 141 -----------------------~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-~~~~~~ 195 (316)
T 1gsa_A 141 -----------------------TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-HGTRYC 195 (316)
T ss_dssp -----------------------ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-TTTSCE
T ss_pred -----------------------eCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-cCCceE
Confidence 678889988888899 9999999999999999998 88899888776532 223689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEE-ecccccc-c-cccc-ceEEEecCCCCCCHHHHHHHHHHHHHHHHH---cCcee
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAA-LHSRDCS-V-QRRH-QKIIEEGPITVAPLETVKKLEQAARRLAKC---VNYVG 344 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~-l~~Rdcs-v-qrr~-qKiieeaPa~~l~~e~~~eL~~~A~rla~a---LGy~G 344 (2267)
++|+|+++.+++++.++..+ |+++. ...|... . .+.+ .......|.. +++ ++.+.+.+++++ +|+ +
T Consensus 196 lvqe~i~~~~~~~~~v~~~~-g~~~~~~~~r~~~~~~~~~~~~~gg~~~~~~-~~~----~~~~~a~~~~~~l~~~g~-~ 268 (316)
T 1gsa_A 196 MAQNYLPAIKDGDKRVLVVD-GEPVPYCLARIPQGGETRGNLAAGGRGEPRP-LTE----SDWKIARQIGPTLKEKGL-I 268 (316)
T ss_dssp EEEECCGGGGGCEEEEEEET-TEECSEEEEEECCSSCSCCCGGGTCEEEEEE-CCH----HHHHHHHHHHHHHHHTTC-C
T ss_pred EEecccCCCCCCCEEEEEEC-CEEeeeEEEEeCCCCCceeEEccCCccccCC-CCH----HHHHHHHHHHHHHHhCCC-c
Confidence 99999997334444444332 45443 2222100 0 0100 0000012332 333 345555555554 576 5
Q ss_pred eeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcC
Q 000092 345 AATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 345 a~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
.+.+||+ |. ||||+|||..++...++..+|+|+.++.+++..+
T Consensus 269 ~~~vD~~-----g~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 269 FVGLDII-----GD-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp EEEEEEE-----TT-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEEEEec-----CC-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHH
Confidence 6779988 33 8999999976556666778999999999887654
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=189.61 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=143.5
Q ss_pred CCCEEEeCCCcCCCCCchHHHHHH-----cCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccc
Q 000092 131 RVDAVWPGWGHASEIPELPDTLST-----KGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVT 205 (2267)
Q Consensus 131 ~vDaV~pG~G~~sEn~~la~~l~~-----~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~ 205 (2267)
.+|+|++..+. +...+...++. .|+.+ +++++++..+.||..++++++++|||+|+|..
T Consensus 55 ~~d~v~~~~~~--~~~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~------------- 118 (324)
T 1z2n_X 55 EPNAIITKRTH--PVGKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINALLIKNNIPIPNSFS------------- 118 (324)
T ss_dssp CCSEEEECCSC--SSSHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEE-------------
T ss_pred CceEEEEeccc--hHHHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEE-------------
Confidence 57889887533 22234555554 68876 48999999999999999999999999999876
Q ss_pred cCcccccccccCCHHHHHHHHhhh--CCcEEEeecCCCCC---cCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-
Q 000092 206 IPDDVYRQACVYTTEEAIASCQVV--GYPAMIKASWGGGG---KGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ- 279 (2267)
Q Consensus 206 v~~~~~~~~~V~s~eea~~~a~~I--GyPVVIKPs~GgGG---kGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g- 279 (2267)
+.+.+++.+++++. +||+|+||..|+|| +|+.++++.++|.. ...++++|+||++
T Consensus 119 ----------~~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------~~~~~lvqe~i~~~ 179 (324)
T 1z2n_X 119 ----------VKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------IHFPCLCQHYINHN 179 (324)
T ss_dssp ----------ESSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT---------CCSSEEEEECCCCT
T ss_pred ----------eCCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh---------cCCCEEEEEccCCC
Confidence 66788888877774 49999999999999 99999999888653 1568999999985
Q ss_pred cceeeEEEEEcCCCCEEEecccccc--ccc----------------------------------ccce-EEEecCCCCCC
Q 000092 280 SRHLEVQLLCDQYGNVAALHSRDCS--VQR----------------------------------RHQK-IIEEGPITVAP 322 (2267)
Q Consensus 280 ~rhieVqvl~D~~G~vi~l~~Rdcs--vqr----------------------------------r~qK-iieeaPa~~l~ 322 (2267)
+++++|.+++ |.++... |... +.. .+.+ -+..++. .+
T Consensus 180 g~~~~v~v~g---~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~--~~ 253 (324)
T 1z2n_X 180 NKIVKVFCIG---NTLKWQT-RTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPI--LL 253 (324)
T ss_dssp TCEEEEEEET---TEEEEEE-ECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTT--TT
T ss_pred CcEEEEEEEC---CEEEEEE-ecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCc--cc
Confidence 4677776663 3444432 2110 000 0000 0000111 12
Q ss_pred HHHH-HHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 323 LETV-KKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 323 ~e~~-~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
.... +++.+.|.++++++|+. .++|||++++++|++||||||||++..
T Consensus 254 ~~~~~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 254 NLTSEAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp TSCCHHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred cCCCHHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 2222 68999999999999996 788999997446889999999998754
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=183.76 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=146.5
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|...++..+..|..|+++.+ . + +|.|+ ++ +|..|. +.+||+|+
T Consensus 68 ~~~~~~~~~~r~~~re~I~~l----------------~---D--~f~El-----~~---------d~~~~~-d~~vV~G~ 111 (327)
T 2f9i_A 68 DRVQIARLQERPTTLDYIPYI----------------F---D--SFMEL-----HG---------DRNFRD-DPAMIGGI 111 (327)
T ss_dssp HHHHHHTBTTSCCHHHHHHHH----------------C---E--EEEEC-----CC---------CSSSCC-CTTEEEEE
T ss_pred hcccccCCCCCCCHHHHHHHh----------------c---c--ceEEe-----cC---------CCCcCc-ccceEEEE
Confidence 345678999999988877766 1 1 37776 23 122232 34699999
Q ss_pred EEecCccccCCcEEEEEEecccc--------cCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDVTF--------KAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~T~--------~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
+++ +|++|+|++||.++ ++|++++...+|+.|++++|.+.++|+|+|.|++|+|+|.. .....+
T Consensus 112 gri------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~Ga~~g~~--ae~~g~ 183 (327)
T 2f9i_A 112 GFL------NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKA--AEERGQ 183 (327)
T ss_dssp EEE------TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCCHH--HHHTTH
T ss_pred EEE------CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCcchh--hhhhhh
Confidence 987 99999999999988 99999999999999999999999999999999999999943 322211
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
+. ...++ +. ++ +-..+|+
T Consensus 184 ~~-------------------~~a~~----------------------------------l~-------al--~~~~vPv 201 (327)
T 2f9i_A 184 SE-------------------SIATN----------------------------------LI-------EM--ASLKVPV 201 (327)
T ss_dssp HH-------------------HHHHH----------------------------------HH-------HH--HTCSSCE
T ss_pred HH-------------------HHHHH----------------------------------HH-------HH--HhCCCCE
Confidence 11 00000 00 00 0113799
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccc----cCCccccccccCceEEEecCc
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTVSDD 1817 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~----~lGG~~i~~~nGv~d~~v~dd 1817 (2267)
|++|+|+|+||||+++.+||++||.+++.+.+.||...-..+-+.+-...+ ....++-+...|++|.+++..
T Consensus 202 IavV~G~a~GGGa~~~~~~D~via~~~A~~~v~~peg~a~il~~~~~~a~~A~e~~~itA~~a~~~GlVd~VV~ep 277 (327)
T 2f9i_A 202 IAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEP 277 (327)
T ss_dssp EEEEEEEEBHHHHHTTCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGGHHHHHHHHTCBHHHHHHTTSSSEEECCC
T ss_pred EEEEECCcChHHHHHHHCCCEEEEcCCceEeecCchHHHHHHHHHhcchHHHHHHcCCCHHHHHHcCCceEEecCC
Confidence 999999999999999999999999999999999998877766554310011 334555667899999999743
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=213.32 Aligned_cols=243 Identities=15% Similarity=0.071 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHcCCCEEEeCCC--cCCCCCchHHHHHHcCCeEeCCCH-HHHHHhcCHHHHHHHHHHcCCCCCCCCCCCc
Q 000092 119 NVQLIVEMAEMTRVDAVWPGWG--HASEIPELPDTLSTKGIIFLGPPA-TSMAALGDKIGSSLIAQAANVPTLPWSGSHV 195 (2267)
Q Consensus 119 dvd~Il~iA~~~~vDaV~pG~G--~~sEn~~la~~l~~~GI~fiGPs~-eam~~lgDK~~~k~laq~aGVPtpp~~~~~~ 195 (2267)
+.+.|+++|++.+++++..+.+ +..........+...|. ..|+++ .++..++||..+|++++++|||+|+|..
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~-itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~--- 504 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGN-MTSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDE--- 504 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTT-BCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCC---
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCC-eeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEE---
Confidence 5789999999999999775532 22221111100100121 235544 4667778999999999999999999876
Q ss_pred cCCCCCcccccCcccccccccCCHHHHHHHH-hhhCCcEEEeecCCCCCcCeEEEC---CHHHHHHHHHHHHhhCCCCcE
Q 000092 196 KIPPESCLVTIPDDVYRQACVYTTEEAIASC-QVVGYPAMIKASWGGGGKGIRKVH---NDDEVRALFKQVQGEVPGSPI 271 (2267)
Q Consensus 196 ~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a-~~IGyPVVIKPs~GgGGkGIr~V~---s~eEL~~a~~~~~~e~~~~~I 271 (2267)
+.+.+++.+++ +.+|||+||||..|++|+||++|+ +.+++.++++.+... +..+
T Consensus 505 --------------------~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~--~~~v 562 (750)
T 3ln6_A 505 --------------------FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE--DSAI 562 (750)
T ss_dssp --------------------EETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH--CSEE
T ss_pred --------------------ECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh--CCcE
Confidence 55667777766 678999999999999999999999 999999999987654 5689
Q ss_pred EEEEeccccceeeEEEEEcCCCCEEEeccccccc------------------c-cc---cceEEE---------------
Q 000092 272 FIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV------------------Q-RR---HQKIIE--------------- 314 (2267)
Q Consensus 272 ~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsv------------------q-rr---~qKiie--------------- 314 (2267)
+||+|++| +|++|.++++ .++....|.... . +| |.+..+
T Consensus 563 lVEefI~G-~E~~v~Vvgg---~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~ 638 (750)
T 3ln6_A 563 LVEEYIEG-TEYRFFVLEG---DCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQ 638 (750)
T ss_dssp EEEECCCS-EEEEEEEETT---EEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHT
T ss_pred EEEeccCC-CEEEEEEECC---EEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHc
Confidence 99999986 8999998853 566554442110 0 00 110000
Q ss_pred -----e-------------------cCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc-------cCCcEEEee
Q 000092 315 -----E-------------------GPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM-------ETGEYYFLE 363 (2267)
Q Consensus 315 -----e-------------------aPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~-------~~g~~yfLE 363 (2267)
. +-+...+.++.+++.+.|+++++++|+. .+.||++.+. +.+++++||
T Consensus 639 g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiE 717 (750)
T 3ln6_A 639 GYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIE 717 (750)
T ss_dssp TCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEE
T ss_pred CCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEE
Confidence 0 0011123456678999999999999987 8889999872 245789999
Q ss_pred eCccCcCC-cceehhhhcCCHHHHHHHHHc
Q 000092 364 LNPRLQVE-HPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 364 INpRlqge-hpvtE~vtGvDL~~~qL~iA~ 392 (2267)
+|++++-. |......+|.|+....+....
T Consensus 718 vN~~pg~~~h~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 718 LNFNPLMYMHTYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp EESSCCCHHHHSCSBSCCCCCHHHHHHHHC
T ss_pred EcCCcchhhhcCcccCCCCcHHHHHHHHhC
Confidence 99999864 433334678999988887653
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-16 Score=184.26 Aligned_cols=172 Identities=14% Similarity=0.189 Sum_probs=134.2
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCC-----CCCcC
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWG-----GGGKG 245 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~G-----gGGkG 245 (2267)
.||..++++++++|||+|+|.. +++.+++.++++++|||||+||..+ ++|.|
T Consensus 20 l~k~~~k~ll~~~GIp~p~~~~-----------------------~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gG 76 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEEKL-----------------------AKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKV 76 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCCEE-----------------------ESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTC
T ss_pred CCHHHHHHHHHHcCcCCCCeEE-----------------------eCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCC
Confidence 4999999999999999999876 7789999999999999999999999 78889
Q ss_pred eEE-ECCHHHHHHHHHHHHhhCC-------CCcEEEEEeccccceeeEEEEEcC-CCCEEEecccccccccccceEEEec
Q 000092 246 IRK-VHNDDEVRALFKQVQGEVP-------GSPIFIMKVASQSRHLEVQLLCDQ-YGNVAALHSRDCSVQRRHQKIIEEG 316 (2267)
Q Consensus 246 Ir~-V~s~eEL~~a~~~~~~e~~-------~~~I~VEeyI~g~rhieVqvl~D~-~G~vi~l~~Rdcsvqrr~qKiieea 316 (2267)
+++ |+|.+++.++++++..... ...++||+|+++++|++|.++.|. .|.++.++.....+...+.......
T Consensus 77 v~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~ 156 (238)
T 1wr2_A 77 VMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLV 156 (238)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEES
T ss_pred EEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecC
Confidence 998 7999999999998775431 268999999998899999999998 6777665431111111111122223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEE------------EEEccCCc-EEEeeeCccCc
Q 000092 317 PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY------------LYSMETGE-YYFLELNPRLQ 369 (2267)
Q Consensus 317 Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEf------------l~d~~~g~-~yfLEINpRlq 369 (2267)
| ++++..++|.+.+.++..++||+|...+++ ++.. .++ +++|||||++-
T Consensus 157 P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~-~~~~~~~lEINPl~~ 218 (238)
T 1wr2_A 157 P---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDD-LKDYIKEMDLNPVFV 218 (238)
T ss_dssp S---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHH-TTTTEEEEEEEEEEE
T ss_pred C---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHc-CCCCeEEEeccCeEE
Confidence 4 889999999999999999999999866653 1221 344 99999999874
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=192.94 Aligned_cols=160 Identities=18% Similarity=0.116 Sum_probs=122.3
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccccc--------cceEEEEEEEECCeEEEEEEEeccccccccCCCCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~--------a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~ 1929 (2267)
....+|++|+. |||+|||.|+...| +++||||+|+|+|+||.|+++|++++
T Consensus 59 gkltareRI~~-----------LlD~gsF~E~~~~y~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~---------- 117 (587)
T 1pix_A 59 GELTALQRIEK-----------LVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKL---------- 117 (587)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEETTEEEEEEEECTTTT----------
T ss_pred CCCCHHHHHHH-----------HcCCCCceEhhhhcchhhhcCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 45678999997 89999999998755 38999999999999999999998766
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhh----hchHHHHHHHHHHHhcCCCCEE
Q 000092 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF----EGILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1930 p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~----~gilk~ga~iv~al~~~~vP~i 2005 (2267)
||+|++..++|+.|+++.|.++++|||+|+|++|...+...+. .++. ..+..+..++...+|+|
T Consensus 118 -----------gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGArlqe~~~~l~~~~~~g-~i~~~~~~ls~~giP~I 185 (587)
T 1pix_A 118 -----------AGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGG-TPFFRNAELNQLGIPVI 185 (587)
T ss_dssp -----------TTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTT-HHHHHHHHHHHTTCCEE
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCccccchhccccccHH-HHHHHHHHHhCCCCCEE
Confidence 8999999999999999999999999999999999554433331 1222 23444555777889999
Q ss_pred EEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhh---hhcchh
Q 000092 2006 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIE---IKFRTK 2057 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~---I~~r~~ 2057 (2267)
++|. |++.||+... +. .|++ +.+.++|.+++.||+.+-. |.|.+.
T Consensus 186 svv~--G~~~GGga~~-a~---~d~v-im~e~~a~i~~~GP~vi~~~~~~~~~d~ 233 (587)
T 1pix_A 186 VGIY--GTNPAGGGYH-SI---SPTV-IIAHEKANMAVGGAGIMGGMNPKGHVDL 233 (587)
T ss_dssp EEEC--SEEETHHHHH-HH---SSSE-EEEETTCEEESCCCTTCCSCCSSSSCCH
T ss_pred EEEe--cCCcHHHHHH-Hh---cCce-EEecCCcEEEecCHHHHhhhccccccch
Confidence 9999 6666654333 32 2441 4556779999999954433 444444
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=184.12 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=144.8
Q ss_pred HHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEEE
Q 000092 1515 KRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWCM 1594 (2267)
Q Consensus 1515 kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~~ 1594 (2267)
|...++..+++|..|+++.+ . + +|.|+ ++ ++..|. +.+||+|++
T Consensus 83 r~~~~r~~~rp~~re~I~~l----------------~---D--~f~El-----~g---------~~~~~~-d~avV~G~a 126 (339)
T 2f9y_A 83 IAQLARHPQRPYTLDYVRLA----------------F---D--EFDEL-----AG---------DRAYAD-DKAIVGGIA 126 (339)
T ss_dssp HHHHHTCTTCCCHHHHHHHH----------------C---E--EEEEC-----CC---------CSSSCC-CTTEEEEEE
T ss_pred hhcccCCCCCCCHHHHHHHH----------------c---c--ccEEc-----cC---------CcCCCC-CCcEEEEEE
Confidence 55779999999988877766 1 1 37777 23 122222 246999999
Q ss_pred EecCccccCCcEEEEEEeccc--------ccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1595 EMFTPEFPSGRTILIVANDVT--------FKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1595 ~~~tp~~~~Gr~vvvianD~T--------~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
++ +|++|+|++||.. +++|++++...+|+.|++++|.+.++|+|+|.|++|+|+| ++.....++
T Consensus 127 ri------~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~Ga~~g--~~aE~~g~~ 198 (339)
T 2f9y_A 127 RL------DGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPG--VGAEERGQS 198 (339)
T ss_dssp EE------TTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCS--HHHHHTTHH
T ss_pred EE------CCEEEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCccc--hHHHHHHHH
Confidence 87 9999999999988 5999999999999999999999999999999999999999 433222111
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
. ...++ +. ++ +-..+|+|
T Consensus 199 ~-------------------~~a~~----------------------------------l~-------al--~~~~vPvI 216 (339)
T 2f9y_A 199 E-------------------AIARN----------------------------------LR-------EM--SRLGVPVV 216 (339)
T ss_dssp H-------------------HHHHH----------------------------------HH-------HH--HTCSSCEE
T ss_pred H-------------------HHHHH----------------------------------HH-------HH--HhCCCCEE
Confidence 1 00000 00 00 01137999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccc----cCCccccccccCceEEEecC
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHM----QLGGPKIMATNGVVHLTVSD 1816 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~----~lGG~~i~~~nGv~d~~v~d 1816 (2267)
++|+|+|+||||+++.+||++||.+++.+.+.||......+-+..-..++ ..-.++-+...|++|.+++.
T Consensus 217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v~~Peg~asil~~~~~~~~~Aae~~~itA~~a~~~GlVd~VV~e 290 (339)
T 2f9y_A 217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPE 290 (339)
T ss_dssp EEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHTTTSCSCCCCC
T ss_pred EEEeCCcCcHHHHHHhccCeeeecCCCEEEeeccchHHHHHHHhhccHHHHHHHcCCCHHHHHHcCCeeEEecC
Confidence 99999999999999999999999999999999998877766554300001 23344556789999999974
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-16 Score=157.18 Aligned_cols=97 Identities=39% Similarity=0.652 Sum_probs=93.3
Q ss_pred EEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEE
Q 000092 673 LIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELI 751 (2267)
Q Consensus 673 ~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~L 751 (2267)
+++|++|.++...++..|.||++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|. + +++|+.|.+|++|
T Consensus 3 ~~~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l 81 (100)
T 2dn8_A 3 SGSSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVV 81 (100)
T ss_dssp CCCCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEE
T ss_pred ccCCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999 7 9999999999999
Q ss_pred EEEecCCCCccccCCCCCC
Q 000092 752 ARLDLDDPSAVRKAEPFYG 770 (2267)
Q Consensus 752 a~l~~~~~~~v~~~~~f~g 770 (2267)
++|+..++..+..+.||+|
T Consensus 82 ~~i~~~~~~~v~~~~~~~~ 100 (100)
T 2dn8_A 82 ARLELDDPSKVHPSGPSSG 100 (100)
T ss_dssp EEECCSCSCCCCSCCCCCC
T ss_pred EEEEcCCccEEEeccccCC
Confidence 9999999999999999986
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=193.96 Aligned_cols=152 Identities=21% Similarity=0.236 Sum_probs=120.1
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccccc--------cceEEEEEEEECCeEEEEEEEeccccccccCCCCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~--------a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~ 1929 (2267)
....+|++|+. |||+|||.|+...| +++||||+|+|+|+||.|+++|++++
T Consensus 60 GkltaRERI~~-----------LlD~GSF~El~~~~~~~~~~~~~dgVVtG~G~I~Gr~V~V~a~D~tv~---------- 118 (588)
T 3gf3_A 60 GQLSAMQRINA-----------LIDPGTWCPLNSLFNPENNKFGTTNIVNGLGRVDGKWVYIVASDNKKM---------- 118 (588)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSSCSEEEEEEEETTEEEEEEEECTTSG----------
T ss_pred CCCCHHHHHHH-----------HcCCCceEEccccccccccCCCCCcEEEEEEEECCEEEEEEEECCccc----------
Confidence 45789999997 89999999998765 47999999999999999999998766
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHH---HhcCCCCEEE
Q 000092 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQPVFV 2006 (2267)
Q Consensus 1930 p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP~i~ 2006 (2267)
||++++..++|++|+++.|.++++|||+|+|++|+..+...+....+...++++.+ ++...+|+|+
T Consensus 119 -----------gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Is 187 (588)
T 3gf3_A 119 -----------AGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIV 187 (588)
T ss_dssp -----------GGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEE
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEE
Confidence 89999999999999999999999999999999997765322110001222344444 5556899999
Q ss_pred EEccCCcCC-chhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2007 YIPMMAELR-GGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2007 vI~~~g~~~-GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|+ |++. ||+|.++. +++ ++++|+|.+++.||+-+
T Consensus 188 vv~--Gp~~gGgAy~a~~----~~v--im~~~~a~i~~aGP~vI 223 (588)
T 3gf3_A 188 GIY--GTNPAGGGYHSIS----PTI--LIAHQDANMAVGGAGIL 223 (588)
T ss_dssp EEC--SEEETHHHHHHHS----SSE--EEEETTCEEESSCCC--
T ss_pred EEe--CCCCchhhhHhhC----CeE--EEEECCcEEEecChhhh
Confidence 999 6554 45766443 466 78999999999999643
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=189.87 Aligned_cols=147 Identities=21% Similarity=0.188 Sum_probs=122.9
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 55 gkltareRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~t~~--- 120 (548)
T 2bzr_A 55 GKLTARERIYA-----------LLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVF--- 120 (548)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCSTTGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCccc---
Confidence 35689999997 8999999998642 358999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|.|+|++| ..|++|+.. ..++++.++..+
T Consensus 121 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSGG-----ARmqeg~~sl~~~~~i~~~~~~~ 177 (548)
T 2bzr_A 121 ------------------GGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAG-----ARIQEGVVSLGLYSRIFRNNILA 177 (548)
T ss_dssp ------------------GGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCS-----CCGGGTTHHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCChhHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CCchhHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999 455555543 557787777665
Q ss_pred C--CCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 2001 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 2001 ~--vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
. +|+|++|+ |.+.||+....+ -.|+ ++|.|+ |.+++.||+-
T Consensus 178 s~~iP~Isvv~--gp~~GG~a~s~a---l~D~--ii~~~~~a~i~~aGP~v 221 (548)
T 2bzr_A 178 SGVIPQISLIM--GAAAGGHVYSPA---LTDF--VIMVDQTSQMFITGPDV 221 (548)
T ss_dssp TTTSCEEEEEC--SEEESGGGHHHH---HSSE--EEEETTTCEEESSCHHH
T ss_pred cCCCcEEEEec--CCCchHHHHHHH---hCCe--EEeccCceeEEeccHHH
Confidence 5 89999999 666666544443 2588 999997 9999999943
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=190.50 Aligned_cols=147 Identities=20% Similarity=0.186 Sum_probs=121.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 42 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~l~~~~~~~dgvvtG~G~I~Gr~v~v~a~D~t~~--- 107 (523)
T 1on3_A 42 GKQTARERLNN-----------LLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVM--- 107 (523)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------hcCCCccEEeCCccccCCCccccccccCCCCcEEEEEEEECCEEEEEEEEcCCcc---
Confidence 45688999997 8999999998642 358999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|+|+|++| ..|++|+.. ..++++.++..+
T Consensus 108 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGG-----ARmqeg~~sl~~~~~i~~~~~~~ 164 (523)
T 1on3_A 108 ------------------GGSAGETQSTKVVETMEQALLTGTPFLFFYDSGG-----ARIQEGIDSLSGYGKMFFANVKL 164 (523)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS-----BCGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CChhhHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999998 556666543 557777765554
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
.+|+|++|+ |.+.||+-.... -.|+ ++|.|+|.+++.||.-
T Consensus 165 s~~iP~Isvv~--gp~~GG~a~s~~---l~D~--ii~~~~a~i~~aGP~v 207 (523)
T 1on3_A 165 SGVVPQIAIIA--GPCAGGASYSPA---LTDF--IIMTKKAHMFITGPQV 207 (523)
T ss_dssp TTTSCEEEEEE--EEEESGGGHHHH---HSSE--EEEETTCEEESSCHHH
T ss_pred cCCCCEEEEEc--CCCchHHHHHHh---hCCe--EEEeCCCEEEecCHHH
Confidence 489999999 666665433332 2588 9999999999999953
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=190.23 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=118.8
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc---------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.. ..+++||||+|+|+|+||.|+++|++++
T Consensus 45 g~l~areRi~~-----------LlD~gsF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~i~Gr~v~v~a~D~t~~--- 110 (527)
T 1vrg_A 45 GKLTAWERLEL-----------LLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVM--- 110 (527)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCGGGGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HccCCceEEcccccccCCcccCcccccCCCCcEEEEEEEECCEEEEEEEEecccc---
Confidence 45789999997 899999999942 1348999999999999999999998876
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHHHh--
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLR-- 1998 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~-- 1998 (2267)
||++++..++|+.|+++.|.++++|+|+|+|++|... ++++. ...++++.++.
T Consensus 111 ------------------gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~dSgGAR~-----qeg~~~l~g~~~~~~~~~~~ 167 (527)
T 1vrg_A 111 ------------------GGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARI-----QEGVDALAGYGEIFLRNTLA 167 (527)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCG-----GGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CccccHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCc-----cchhHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999543 33332 23455544433
Q ss_pred cCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccch
Q 000092 1999 TYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2049 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~pega 2049 (2267)
...+|+|++|+ |++.||+....+. .|+ ++|.|+ |.+++.||+-+
T Consensus 168 s~~iP~Isvv~--Gp~~GG~a~s~al---~D~--vi~~~~~a~i~~aGP~vi 212 (527)
T 1vrg_A 168 SGVVPQITVIA--GPCAGGAVYSPAL---TDF--IVMVDQTARMFITGPNVI 212 (527)
T ss_dssp TTTSCEEEEEE--EEEBGGGGHHHHH---SSE--EEEETTTCBCBSSCHHHH
T ss_pred CCCCCEEEEEe--CCCchHHHHHHHc---CCe--EEEecCceEEEecCHHHH
Confidence 45599999999 7777765444442 587 999998 99999999543
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=187.92 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=121.0
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||.|+|+|+||.|+++|++++
T Consensus 38 g~l~areRi~~-----------LlD~gsf~E~~~~~~~~~~~f~~~~~~~~~dgvvtG~G~i~Gr~v~v~a~D~t~~--- 103 (522)
T 1x0u_A 38 GKLTARERLAL-----------LFDDGKFNEIMTFATTRATEFGLDKQRFYGDGVVTGWGKVDGRTVFAYAQDFTVL--- 103 (522)
T ss_dssp TCCCHHHHHHH-----------HSSSSCCEESSSSCCCCCCGGGTTTCCCTTTTEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------hccCCccEEeCCcccCCCCccccccccCCCCcEEEEEEEECCEEEEEEEecCcee---
Confidence 45688999997 8999999998642 358999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|+|+|++| ..|++|+.. ..++++.++..+
T Consensus 104 ------------------gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGG-----aRmqeg~~sl~~~~~i~~~~~~~ 160 (522)
T 1x0u_A 104 ------------------GGSLGETHANKIVRAYELALKVGAPVVGINDSGG-----ARIQEGALSLEGYGAVFKMNVMA 160 (522)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCS-----BCGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----CChhHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999998 556666543 556776665554
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-c-EEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-A-KGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A-~~gvl~peg 2048 (2267)
.+|+|++|. |.+.||+-.... -.|+ ++|.|+ | .+++.||.-
T Consensus 161 s~~iP~Isvv~--gp~~GG~a~s~~---l~D~--~i~~~~~a~~i~~aGP~v 205 (522)
T 1x0u_A 161 SGVIPQITIMA--GPAAGGAVYSPA---LTDF--IIMIKGDAYYMFVTGPEI 205 (522)
T ss_dssp TTTSCEEEEEC--SEEEGGGGHHHH---HSSE--EEEECSTTCEEESSCHHH
T ss_pred CCCCcEEEEEc--CCCchHHHHHHh---cCCe--EEEecCCccEEEecCHHH
Confidence 489999999 666665433332 2588 999998 9 999999943
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=188.34 Aligned_cols=148 Identities=20% Similarity=0.197 Sum_probs=123.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc---------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.. .++++||||+|+|+|+||+|+++|++++
T Consensus 44 gkl~aReRI~~-----------LlD~gSF~E~~~~~~~~~~~f~~~~~~~~~dgvVtG~G~I~Gr~v~v~a~D~tv~--- 109 (530)
T 3iav_A 44 GKLTARERIDL-----------LLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVF--- 109 (530)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCCeEEcCCccccCCCCcccccccCCCCcEEEEEEEECCEEEEEEEECCCcc---
Confidence 56889999997 899999999964 3468999999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~al~~~ 2000 (2267)
||+|++..++|++|+++.|.+.++|||.|+|++|+ .|++|+. ...++++.+++.+
T Consensus 110 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~dSgGa-----RmqEg~~~l~~~~~i~~~~~~~ 166 (530)
T 3iav_A 110 ------------------GGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGA-----RIQEGVASLGAYGEIFRRNTHA 166 (530)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSB-----CGGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------eEeccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCc-----chhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 4555553 3567888877765
Q ss_pred C--CCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccch
Q 000092 2001 K--QPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEGM 2049 (2267)
Q Consensus 2001 ~--vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~pega 2049 (2267)
+ +|+|++|. |.+.||+....+. .|+ ++|.++ |.+++.||.-+
T Consensus 167 s~~iP~Isvv~--G~~~GG~a~~~al---~D~--~im~~~~a~i~~aGP~vi 211 (530)
T 3iav_A 167 SGVIPQISLVV--GPCAGGAVYSPAI---TDF--TVMVDQTSHMFITGPDVI 211 (530)
T ss_dssp TTTSCEEEEEC--SEEEGGGGHHHHH---SSE--EEEETTTCEEESSCHHHH
T ss_pred cCCCCEEEEEe--cCcchHHHHHHHh---CCE--EEEecCCcEEEecCHHHH
Confidence 4 89999999 7777765554442 687 887664 99999999543
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=182.65 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=121.6
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 52 gkltaReRI~~-----------LlD~gSF~E~~~~~~~~~~~~~~~~~~~~~dgVVtG~G~I~Gr~v~v~a~D~t~~--- 117 (531)
T 3n6r_B 52 GKLTARERVDL-----------LLDEGSFEEFDMFVTHRCTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVL--- 117 (531)
T ss_dssp TCCCHHHHHHH-----------HSSSSCCEEECTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------hcCCCceEEcCCccccCCcccccccccCCCCCEEEEEEEECCEEEEEEEECCCcc---
Confidence 45789999997 8999999998642 258899999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHH--HHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQ--AGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk--~ga~iv~al~~~ 2000 (2267)
||++++..++|+.|+++.|.+.++|+|.|+|++| ..|++|+.. ..++++.++..+
T Consensus 118 ------------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGG-----ARmqeg~~sl~~~~~i~~~~~~~ 174 (531)
T 3n6r_B 118 ------------------GGSVSETHSKKICKIMDMAMQNGAPVIGINDSGG-----ARIQEGVDSLAGYGEVFQRNIMA 174 (531)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCC-----BCGGGTHHHHHHHHHHHHHHHHT
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCc-----cccCcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 455556543 457777765554
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccc-cEEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRT-AKGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~-A~~gvl~peg 2048 (2267)
.+|+|++|. |++.||+....+. .|+ ++|.++ |.+++.||+-
T Consensus 175 s~~iP~Isvv~--Gp~~GG~a~s~a~---~D~--vi~~~~~a~i~~aGP~v 218 (531)
T 3n6r_B 175 SGVVPQISMIM--GPCAGGAVYSPAM---TDF--IFMVKDSSYMFVTGPDV 218 (531)
T ss_dssp TTTSCEEEEEC--SCCBGGGGHHHHH---SSE--EEEETTTCBCBSSCHHH
T ss_pred hCCCCEEEEEe--CCcchHHHHHhhh---CCE--EEEecCCceEeecCHHH
Confidence 489999999 7777766555443 577 899885 9999999943
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=178.73 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=115.3
Q ss_pred CCCChHHHhcccccCCCCcccccccCCC-ceecccc----------ccceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDS-FVETLEG----------WARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gS-F~E~~~~----------~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
....+|++|+. |||+|| |.|+... .+++||||+|+|+|+||.|+++|++++
T Consensus 72 gkltaReRI~~-----------LlD~gS~F~E~~~l~~~~~y~~~~~~dgVVtG~G~I~Gr~v~V~a~D~tv~------- 133 (555)
T 3u9r_B 72 GKLLVRERINR-----------LLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVK------- 133 (555)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEEECTTTTTTTSSSCCGGGGEEEEEEEETTEEEEEEEECTTTG-------
T ss_pred CCCCHHHHHHH-----------HcCCCCCEEEEccccccccccccCCCCcEEEEEEEECCEEEEEEEECCccc-------
Confidence 45788999997 899999 9997431 257999999999999999999998766
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhh---chHHHHHHHHHHHhcCCCC
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFE---GILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~---gilk~ga~iv~al~~~~vP 2003 (2267)
||++++..++|+.|+++.|.++++|+|+|+|++|...+...+.- +........+..++...+|
T Consensus 134 --------------gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~~~~~~~~~~~i~~~~~~ls~~giP 199 (555)
T 3u9r_B 134 --------------GGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIP 199 (555)
T ss_dssp --------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGGTSSSTTSTTHHHHHHHHHHHTTCC
T ss_pred --------------cCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcceeecccccHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999996544332211 1112233333445567899
Q ss_pred EEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2004 VFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|++|. |++.||+....+ +..++ +.+.++|.+++.||+
T Consensus 200 ~Isvv~--G~~~GGga~~~a--~~d~v--im~e~~a~i~~aGP~ 237 (555)
T 3u9r_B 200 QIAVVM--GSCTAGGAYVPA--MSDET--VMVREQATIFLAGPP 237 (555)
T ss_dssp EEEEEC--SCCBGGGGHHHH--TSSEE--EEETTTCBCBSSCHH
T ss_pred EEEEEe--cCCCccHHHHHH--hCCce--EEecCCceEEEccHH
Confidence 999999 666665433332 22333 557889999999994
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=158.37 Aligned_cols=217 Identities=14% Similarity=0.084 Sum_probs=153.2
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHcCC---CCCCCCCCCccCC
Q 000092 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2267)
Q Consensus 131 ~vDaV~pG~G~~s--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~~k~laq~aGV---Ptpp~~~~~~~~~ 198 (2267)
..|+|++-.+... ++. .+...++..|++.+ ++++++..|+|| ..+.++++++|+ |.+|...
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~------ 140 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY------ 140 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEe------
Confidence 4699998755433 222 23456778999998 999999999999 667788889998 8666432
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
..+.. +..+..|||+|+||..|++|+||.++++.+++++..+..... +..+++|+|++
T Consensus 141 -----------------~~~~~---~~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~--~~~~~vQefI~ 198 (309)
T 1i7n_A 141 -----------------YPNHR---EMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFID 198 (309)
T ss_dssp -----------------ESSGG---GGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------eCChh---hhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeecC
Confidence 11111 234568999999999999999999999999999888765433 35789999999
Q ss_pred ccceeeEEEEEcCCCCEEEecccccccccccceE-EEec---CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-IEEG---PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi-ieea---Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
.++.+.|.++++ ++++...|--+ .|.+. +..+ |.+ ++ +++++.|.++++++|--+.+.||++.+
T Consensus 199 ~g~DiRv~VvGg---~v~a~~Rr~~~---g~wrtN~~~~~~e~~~-l~----~e~~~la~~A~~a~gGldi~GVDll~~- 266 (309)
T 1i7n_A 199 AKYDIRVQKIGN---NYKAYMRTSIS---GNWKTNTGSAMLEQIA-MS----DRYKLWVDACSEMFGGLDICAVKAVHG- 266 (309)
T ss_dssp EEEEEEEEEETT---EEEEEEEESSC---TTTSCSCCCSSEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-
T ss_pred CCceEEEEEECC---EEEEEEEEcCC---CCCeecCCcceeeecC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-
Confidence 888999998865 45554322101 11111 1111 111 22 458889999999995458888999998
Q ss_pred cCCcEEEeeeCc--cCcCCcceehhhhcCCHHHHHHHH
Q 000092 355 ETGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAV 390 (2267)
Q Consensus 355 ~~g~~yfLEINp--RlqgehpvtE~vtGvDL~~~qL~i 390 (2267)
.+|.++++|+|. -++-+ -++..++.++....+..
T Consensus 267 ~~g~~~V~EVN~~~~P~~~--~~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 267 KDGKDYIFEVMDCSMPLIG--EHQVEDRQLITDLVISK 302 (309)
T ss_dssp TTSCEEEEEEECTTCCCCS--SCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCcc--chhhhhHHHHHHHHHHH
Confidence 367799999999 66543 34445777887777653
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=159.50 Aligned_cols=221 Identities=14% Similarity=0.049 Sum_probs=152.7
Q ss_pred CCCEEEeCCCcCC--CCCc---hHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHcCC---CCCCCCCCCccCC
Q 000092 131 RVDAVWPGWGHAS--EIPE---LPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2267)
Q Consensus 131 ~vDaV~pG~G~~s--En~~---la~~l~~~GI~fiGPs~eam~~lgDK----~~~k~laq~aGV---Ptpp~~~~~~~~~ 198 (2267)
..|+|++-.+... ++.. +...++..|+.++ ++++++..|.|| ..+.++++++|+ |.+|...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~------ 252 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTF------ 252 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEe------
Confidence 5699998755433 2222 3456778999998 999999999999 567778889998 7555322
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
+.+.. +..+..|||+||||..|++|+||.++++.++++..++..... +..+++||||+
T Consensus 253 -----------------~~~~~---~~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~--~~~~~vQEfI~ 310 (422)
T 1pk8_A 253 -----------------YPNHK---EMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT--KTYATAEPFID 310 (422)
T ss_dssp -----------------ESSGG---GCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TSCEEEEECCC
T ss_pred -----------------cCchh---hhhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc--CceEEEEeecC
Confidence 11111 123468999999999999999999999999999888765433 35789999999
Q ss_pred ccceeeEEEEEcCCCCEEEeccccccc-ccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCC
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSV-QRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsv-qrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g 357 (2267)
.++.+.|.++++ ++++...|--+- .+-+.--....+.+ ++ +++++.|.++++++|--+.+.||++.+ ++|
T Consensus 311 ~g~DIRv~VVGg---~vva~~Rr~~~g~WrtNvg~g~~e~i~-lt----~e~~elA~kAaka~gGldiaGVDlL~s-~dG 381 (422)
T 1pk8_A 311 AKYDVRVQKIGQ---NYKAYMRTSVSGNWKTNTGSAMLEQIA-MS----DRYKLWVDTCSEIFGGLDICAVEALHG-KDG 381 (422)
T ss_dssp EEEEEEEEEETT---EEEEEEEEESSSCSSTTSSCEEEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-TTS
T ss_pred CCceEEEEEECC---EEEEEEEEcCCCCceeccCceeeeeeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-CCC
Confidence 888999998865 455433221000 01110000000111 22 468899999999994358888999998 467
Q ss_pred cEEEeeeCc--cCcCCcceehhhhcCCHHHHHHHHH
Q 000092 358 EYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 358 ~~yfLEINp--RlqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
.+|+||+|. ..+-+ -++..++.|+....+...
T Consensus 382 ~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 382 RDHIIEVVGSSMPLIG--DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp CEEEEEEECTTCCCCT--TCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCcc--chhhhHHHHHHHHHHHHH
Confidence 799999999 55433 344567888888877643
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=144.88 Aligned_cols=98 Identities=39% Similarity=0.558 Sum_probs=86.9
Q ss_pred HHhcCHHHHHHHHHHcCCCCCCCC--CCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcC
Q 000092 168 AALGDKIGSSLIAQAANVPTLPWS--GSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 245 (2267)
Q Consensus 168 ~~lgDK~~~k~laq~aGVPtpp~~--~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkG 245 (2267)
..++||..++++++++|||+|+|. . +.+.+++.++++.+|||+|+||..|+||+|
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~-----------------------~~~~~~~~~~~~~~~~P~vvKp~~~~~~~g 60 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGV-----------------------VKDAEEAVRIAREIGYPVMIKASAGGGGKG 60 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSC-----------------------BSSHHHHHHHHHHHCSSEEEEETTSCCTTT
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccc-----------------------cCCHHHHHHHHHhcCCCEEEEECCCCCCcc
Confidence 468899999999999999999987 4 678899999999999999999999999999
Q ss_pred eEEECCHHHHHHHHHHHHh----hCCCCcEEEEEeccccceeeEEEE
Q 000092 246 IRKVHNDDEVRALFKQVQG----EVPGSPIFIMKVASQSRHLEVQLL 288 (2267)
Q Consensus 246 Ir~V~s~eEL~~a~~~~~~----e~~~~~I~VEeyI~g~rhieVqvl 288 (2267)
+++++|.+++.++++++.. ...+.+++||+|++|.+|++|+++
T Consensus 61 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 61 MRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 9999999999999988753 223468999999999889998765
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=157.20 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=154.4
Q ss_pred CCCEEEeCCCcCC--CCC---chHHHHHHcCCeEeCCCHHHHHHhcCH----HHHHHHHHHcCC---CCCCCCCCCccCC
Q 000092 131 RVDAVWPGWGHAS--EIP---ELPDTLSTKGIIFLGPPATSMAALGDK----IGSSLIAQAANV---PTLPWSGSHVKIP 198 (2267)
Q Consensus 131 ~vDaV~pG~G~~s--En~---~la~~l~~~GI~fiGPs~eam~~lgDK----~~~k~laq~aGV---Ptpp~~~~~~~~~ 198 (2267)
..|+|++-.+... ++. .+...++..|++.+ ++++++..|+|| ..+.+++.++|+ |.+|...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~------ 157 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF------ 157 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEE------
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEe------
Confidence 6799998765422 211 23456778999998 999999999999 777788899998 8666332
Q ss_pred CCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc
Q 000092 199 PESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 278 (2267)
Q Consensus 199 ~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~ 278 (2267)
..+.. +..+..|||+|+||..|++|+||.++++.++++..++..... +..+++||||+
T Consensus 158 -----------------~~~~~---~~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~--~~~~~vQefI~ 215 (344)
T 2p0a_A 158 -----------------FPNHK---PMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA--KTYATTEAFID 215 (344)
T ss_dssp -----------------ESSST---TCCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred -----------------cCchh---hhhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc--CCeEEEEeccC
Confidence 11111 124468999999999999999999999999999877655433 45788999999
Q ss_pred ccceeeEEEEEcCCCCEEEecccccccccccceE-EEec---CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEc
Q 000092 279 QSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI-IEEG---PITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSM 354 (2267)
Q Consensus 279 g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi-ieea---Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~ 354 (2267)
.++.+.|.++++ ++++...| . . ..|.+. +..+ +.+ ++ +++++.|.++++++|--+.+.||++.+
T Consensus 216 ~g~DiRv~VVGg---~vva~~R~-~-~-~g~wrtN~~~~~~e~~~-l~----~e~~~la~~Aa~a~gGldi~GVDll~~- 283 (344)
T 2p0a_A 216 SKYDIRIQKIGS---NYKAYMRT-S-I-SGNWKANTGSAMLEQVA-MT----ERYRLWVDSCSEMFGGLDICAVKAVHS- 283 (344)
T ss_dssp EEEEEEEEEETT---EEEEEEEE-E-S-SSCSSTTSSSEEEEEEC-CC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-
T ss_pred CCccEEEEEECC---EEEEEEEe-c-C-CCCCeecCCceEEEeeC-CC----HHHHHHHHHHHHHhCCCCEEEEEEEEc-
Confidence 888899998865 45543222 1 0 011111 0011 221 22 468889999999995458888999998
Q ss_pred cCCcEEEeeeCc--cCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 355 ETGEYYFLELNP--RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 355 ~~g~~yfLEINp--RlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
.+|.+|++|+|. .+.-+ -++..++.|+....++...
T Consensus 284 ~~G~~~VlEVN~~~~P~~~--~~~~~~~~~Ia~~ii~~i~ 321 (344)
T 2p0a_A 284 KDGRDYIIEVMDSSMPLIG--EHVEEDRQLMADLVVSKMS 321 (344)
T ss_dssp TTSCEEEEEEECTTCCCCG--GGHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCCCCccc--chhhhHHHHHHHHHHHHHH
Confidence 467799999999 54432 4455688899988887653
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=134.45 Aligned_cols=77 Identities=40% Similarity=0.677 Sum_probs=72.0
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCCC
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDPS 760 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~~~ 760 (2267)
+++++.|+||++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+.++|+.|.+|++|++|+..++.
T Consensus 2 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~~~G~~V~~G~~l~~i~~~~~~ 78 (84)
T 2kcc_A 2 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGCVVARLELDDLE 78 (84)
T ss_dssp CCCTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTCCCEEEECSCSC
T ss_pred CCCCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEcCCCCEECCCCEEEEEeCCChh
Confidence 35678899999999999999999999999999999999999999999999998777999999999999999887763
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.40 E-value=9.2e-13 Score=161.95 Aligned_cols=174 Identities=13% Similarity=0.215 Sum_probs=121.8
Q ss_pred CCeEeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCCCCCccCCCCCcccccCcccccccccCC--HHHHHHHH
Q 000092 156 GIIFLGPPATSMAALGDKIGSSLIAQAA-------NVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYT--TEEAIASC 226 (2267)
Q Consensus 156 GI~fiGPs~eam~~lgDK~~~k~laq~a-------GVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s--~eea~~~a 226 (2267)
|+.++ +++.++..+.||..|.+++.++ |||+|+|.. +.+ .+++.+..
T Consensus 101 gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~-----------------------~~~~~~~~~~~~~ 156 (346)
T 2q7d_A 101 ETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFME-----------------------LTSLCGDDTMRLL 156 (346)
T ss_dssp TSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEE-----------------------ECSCCCTTHHHHH
T ss_pred CeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEE-----------------------EeCCCHHHHHHHH
Confidence 77766 9999999999999999999997 999999865 111 12333332
Q ss_pred --hhhCCcEEEeecCCCC--CcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEecc-ccceeeEEEEEcCCCCEEEeccc
Q 000092 227 --QVVGYPAMIKASWGGG--GKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS-QSRHLEVQLLCDQYGNVAALHSR 301 (2267)
Q Consensus 227 --~~IGyPVVIKPs~GgG--GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~-g~rhieVqvl~D~~G~vi~l~~R 301 (2267)
..+|||+|+||..|.| |.|+.++.+.++|... +.+++|||||+ +++++.|-++++ .+++. .|
T Consensus 157 ~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~---------~~~~lvQefI~~~G~dirv~VvG~---~v~~~-~r 223 (346)
T 2q7d_A 157 EKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI---------QPPCVVQNFINHNAVLYKVFVVGE---SYTVV-QR 223 (346)
T ss_dssp HHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCEEEEECCCCTTEEEEEEEETT---EEEEE-EE
T ss_pred HhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc---------CCCEEEEEeeCCCCeEEEEEEECC---EEEEE-EE
Confidence 3589999999998654 6699999999988752 46899999997 357888888754 44443 22
Q ss_pred ccccc-c-----------ccceEE---E---ecC------CCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCC
Q 000092 302 DCSVQ-R-----------RHQKII---E---EGP------ITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETG 357 (2267)
Q Consensus 302 dcsvq-r-----------r~qKii---e---eaP------a~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g 357 (2267)
...-. + +.+|+. . ..| ...+++ .+++++.|.++.+++|+..++ ||++.+.++|
T Consensus 224 ~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~~~g-vDii~~~~~g 300 (346)
T 2q7d_A 224 PSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVSLFG-IDIIINNQTG 300 (346)
T ss_dssp ECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCCEEE-EEEEECTTTC
T ss_pred ecCCCcCcCccccccccccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCceEe-eEEEeecCCC
Confidence 11000 0 000100 0 011 011222 578999999999999999775 9999984357
Q ss_pred cEEEeeeCccCc
Q 000092 358 EYYFLELNPRLQ 369 (2267)
Q Consensus 358 ~~yfLEINpRlq 369 (2267)
++|+||+|+=++
T Consensus 301 ~~~VlEVN~~PG 312 (346)
T 2q7d_A 301 QHAVIDINAFPG 312 (346)
T ss_dssp CEEEEEEEESCC
T ss_pred CEEEEEEeCCcc
Confidence 899999999554
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=168.53 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=92.5
Q ss_pred cCeEEEEEEEe------ecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCCC
Q 000092 613 EGSKYRIDMVR------RGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHD 686 (2267)
Q Consensus 613 ~g~~Y~v~v~~------~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d 686 (2267)
+|++|.+++.. .|...|.+.+||+.++|.+......... . . + ......+
T Consensus 594 ~Gk~~~i~l~~i~~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~---------~--~------~--------~~a~~~~ 648 (718)
T 3bg3_A 594 RGKTLHIKALAVSDLNRAGQRQVFFELNGQLRSILVKDTQAMKEM---------H--F------H--------PKALKDV 648 (718)
T ss_dssp TSCEEEEEEEEEEEECTTSEEEEEEESSSSEEEEEEECGGGTCC------------------------------CCCCCS
T ss_pred cCceeEEEecccCCcccCCcEEEEEEECCEEEEEEEeccCccccc---------c--c------c--------ccCCCCC
Confidence 48888887642 2334688888888888887643322100 0 0 0 0112345
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
+..|.|||||+|++|.|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 6789999999999999999999999999999999999999999999999988 99999999999999764
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-12 Score=157.77 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEee--cCCCCCcC---
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKA--SWGGGGKG--- 245 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKP--s~GgGGkG--- 245 (2267)
+++.+|++++++|||+|+|.. +++.+|+.++++++|| |+|+|| ..||.|||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~k 60 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFFV-----------------------ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEET
T ss_pred CHHHHHHHHHHCCcCCCCeEE-----------------------ECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccc
Confidence 578899999999999999876 7899999999999999 899999 46776666
Q ss_pred ------eEEECCHHHHHHHHHHHHhhC--------CC---CcEEEEEeccccceeeEEEEEcCC-C-CEEEec-cccccc
Q 000092 246 ------IRKVHNDDEVRALFKQVQGEV--------PG---SPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SRDCSV 305 (2267)
Q Consensus 246 ------Ir~V~s~eEL~~a~~~~~~e~--------~~---~~I~VEeyI~g~rhieVqvl~D~~-G-~vi~l~-~Rdcsv 305 (2267)
|++++|.+|+.++++++.... ++ ..++||+|++.++|+.+.++.|.. | .++.+. ...+.+
T Consensus 61 s~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~i 140 (395)
T 2fp4_B 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDI 140 (395)
T ss_dssp TSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCH
T ss_pred cCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccc
Confidence 999999999999999886543 22 369999999988999999999985 3 455544 333444
Q ss_pred cc----ccceEEEec--CCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEE---------EEEccCCcEEEeeeCccCc
Q 000092 306 QR----RHQKIIEEG--PITVAPLETVKKLEQAARRLAKCVNYVGAATVEY---------LYSMETGEYYFLELNPRLQ 369 (2267)
Q Consensus 306 qr----r~qKiieea--Pa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEf---------l~d~~~g~~yfLEINpRlq 369 (2267)
.. ...+++... |...+++ ..|.++++.+|+.+...-.+ ++. +.+++++||||++-
T Consensus 141 E~va~~~~d~i~~~~idp~~~l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~--~~d~~~lEINPl~~ 210 (395)
T 2fp4_B 141 EEVAASNPELIFKEQIDIIEGIKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFL--KIDATQVEVNPFGE 210 (395)
T ss_dssp HHHHHHCGGGCEEEECCTTTCCCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred eeccccCCceEEEEecCCCCCCCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhh--hCCeEEEEeeeEEE
Confidence 32 245666544 4444555 45667777778865432111 122 23699999999985
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-12 Score=124.56 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=63.3
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
++.+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+ .|..|++|++|+..+
T Consensus 16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 16 TMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp TCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred CCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 46899999999999999999999999999999999999999999988 99999 899999999998643
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-12 Score=118.84 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=66.1
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.|+||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|..+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 37899999999999999999999999999999999999999999999988 9999999999999998764
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-12 Score=123.27 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=66.3
Q ss_pred CCCceecCCCceeEEE-------EccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 686 DPSKLVAETPCKLLRY-------LVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~-------~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
++..|+||++|+|.++ +|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 3 ~~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 3 SGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CSEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cCeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 4567999999999997 9999999999999999999999999999999999988 99999999999999874
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=125.93 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=63.3
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCcc-CCCCEEEEEecCCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAM-QAGELIARLDLDDP 759 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v-~~G~~La~l~~~~~ 759 (2267)
.++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++ +++|+.| ..|++|++|+..+.
T Consensus 19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp CSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred CccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence 4699999999999999999999999999999999999999999988 9999999 99999999987543
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=124.37 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=63.9
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
+..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+.
T Consensus 15 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~ 83 (93)
T 1k8m_A 15 GIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEAL 83 (93)
T ss_dssp TSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred CCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 35799999999999999999999999999999999999999999988 999999999999999986543
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=152.86 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCc-EEEeecCCCCCc----Ce
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP-AMIKASWGGGGK----GI 246 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyP-VVIKPs~GgGGk----GI 246 (2267)
+|+.+|++++++|||+|+|.. +++.+|+.++++++||| +|+||..+.||| ||
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV 60 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYA-----------------------CTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCE
T ss_pred CHHHHHHHHHHCCcCCCCeeE-----------------------ECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCE
Confidence 689999999999999999876 78999999999999999 999999875554 99
Q ss_pred EEECCHHHHHHHHHHHHhhC--------C---CCcEEEEEeccccceeeEEEEEcCC-C-CEEEec-cc--cccc-cccc
Q 000092 247 RKVHNDDEVRALFKQVQGEV--------P---GSPIFIMKVASQSRHLEVQLLCDQY-G-NVAALH-SR--DCSV-QRRH 309 (2267)
Q Consensus 247 r~V~s~eEL~~a~~~~~~e~--------~---~~~I~VEeyI~g~rhieVqvl~D~~-G-~vi~l~-~R--dcsv-qrr~ 309 (2267)
++++|.+|+.++++++.... . ..+++||+|++.++|+.|.++.|.. | .++.+. .. ++.. ..++
T Consensus 61 ~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~ 140 (388)
T 2nu8_B 61 KVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEET 140 (388)
T ss_dssp EEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccC
Confidence 99999999999999886531 1 2479999999978999999999986 3 455443 11 3332 3322
Q ss_pred -ceEEE--ecCCCCCCHHHHHHHHHHHHHHHHHcCceeee---------EEEEEEEccCCcEEEeeeCccCcC
Q 000092 310 -QKIIE--EGPITVAPLETVKKLEQAARRLAKCVNYVGAA---------TVEYLYSMETGEYYFLELNPRLQV 370 (2267)
Q Consensus 310 -qKiie--eaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~---------tVEfl~d~~~g~~yfLEINpRlqg 370 (2267)
.++.. ..|...+++.... ++++.+|+.+.. .+-.++. +..++++||||++..
T Consensus 141 pd~i~~~~i~P~~gl~~~~a~-------~~~~~lG~~~~~~~~~~~~l~~l~~~~~--~~d~~~lEINPl~~~ 204 (388)
T 2nu8_B 141 PHLIHKVALDPLTGPMPYQGR-------ELAFKLGLEGKLVQQFTKIFMGLATIFL--ERDLALIEINPLVIT 204 (388)
T ss_dssp GGGEEEEECBTTTBCCHHHHH-------HHHHHTTCCTHHHHHHHHHHHHHHHHHH--HTTEEEEEEEEEEEE
T ss_pred CceEEEEecCCCCCCCHHHHH-------HHHHHcCCCHHHHHHHHHHHHHHHHHHH--hCCEEEEEecceEEc
Confidence 45555 5576667765433 344445664321 0001122 236999999999753
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=120.12 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=63.1
Q ss_pred ecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 691 ~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
.++++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 11 ~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 11 ESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 367999999999999999999999999999999999999999999988 999999999999999875
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=152.72 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=121.2
Q ss_pred CCCChHHHhcccc---------cCCC--CcccccccC-CCceecccccc---ceEEEEEE------EECCeEEEEEEEec
Q 000092 1858 NSCDPRAAICGFL---------DNNG--KWIGGIFDK-DSFVETLEGWA---RTVVTGRA------RLGGIPVGIVAVET 1916 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~---------~~~~--~~~~gl~D~-gSF~E~~~~~a---~~vVtG~a------rl~G~pVgViA~e~ 1916 (2267)
-.||--++++... .+.+ +...-|||+ |||.|+....+ .++|+|++ +++|++|.|+++|+
T Consensus 51 y~yd~~~~~~~a~~~~w~~~~~~~~~~l~~~elllD~~gsf~E~~~~~~~~~~GmV~g~~~~~t~~~~~Gr~vvVianD~ 130 (793)
T 2x24_A 51 YVYDFPEMFRQALFKMWPSPDKYPKDILTYTELVLDPQGQLVEMNRLPGGNEVGMVAFKMTLKTLEYPEGRDIILISNDI 130 (793)
T ss_dssp CGGGHHHHHHHHHHHHSCSSSCCCTTSEEEEEEEECTTSCEECCCCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECS
T ss_pred cccccHHHHHHHHHHhhhhcccCCCCchhHHHHhcCCCCCEEEeCCccCCCCCCeeeeeecccCccccCCeEEEEEEECC
Confidence 3577777775211 1122 456679999 99999987664 59999998 56999999999998
Q ss_pred cccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhh-------------
Q 000092 1917 QTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLF------------- 1983 (2267)
Q Consensus 1917 ~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~------------- 1983 (2267)
++. ||++++..++|+.|++++|.++++|+|+|+|++|...|..++.
T Consensus 131 t~~---------------------gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARig~~ee~~sl~qma~~d~~~ 189 (793)
T 2x24_A 131 TFR---------------------IGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPED 189 (793)
T ss_dssp SGG---------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCHHHHTTCEEEESSSSC
T ss_pred ccc---------------------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCccchhhhhhhhcccccCccC
Confidence 766 8999999999999999999999999999999999887643322
Q ss_pred --hch------------------------------------------------HHHHHHHHHHHhc--CCCCEEEEEccC
Q 000092 1984 --EGI------------------------------------------------LQAGSTIVENLRT--YKQPVFVYIPMM 2011 (2267)
Q Consensus 1984 --~gi------------------------------------------------lk~ga~iv~al~~--~~vP~i~vI~~~ 2011 (2267)
.|. ++..+.|..+.+. ..+|+|++|+
T Consensus 190 p~~G~~~~yl~~~~~~~~sa~~~v~~~~~~~~ge~~~~i~~i~g~~~~i~v~~l~~SG~iag~~s~a~~~iP~IsvV~-- 267 (793)
T 2x24_A 190 PHKGIKYLYLTPQDYTRISSLNSVHCKHVEEDGESRYVITDIIGKEEGLGVENLRGSGMIAGETSQDYDEIVTISMVS-- 267 (793)
T ss_dssp STTCEEEEEECHHHHHHTTTSCSEEEEEEEETTEEEEEEEEECCSSSSSSTHHHHHHHHHHHHHHHHHHHSCEEEEEC--
T ss_pred cccchheeccchhHHHhhhccccccccccccccccceeeeccccccchHHHHHHHhccchhhccccccCCCCEEEEEe--
Confidence 111 1111222222322 3599999999
Q ss_pred CcCCc-hhHhhhccccCCccceeecccccEEEeeCccchh
Q 000092 2012 AELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2050 (2267)
Q Consensus 2012 g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav 2050 (2267)
|++.| |||.+.- .|+ ++|.++|.+++.||+.+-
T Consensus 268 G~~~GGgAy~~~l----gD~--vI~~~~a~i~ltGp~vi~ 301 (793)
T 2x24_A 268 CRALGIGAYLVRL----GQR--VIQVENSHIILTGATALN 301 (793)
T ss_dssp SEEETHHHHHHHH----TCC--EEEETTCEEESSCHHHHH
T ss_pred cCCchHHHHHHhh----CCe--EEEeccccEEecCHHHHH
Confidence 65555 5665554 366 899999999999997654
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-11 Score=114.41 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=67.4
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+...|.||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 6 ~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999874
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=113.32 Aligned_cols=69 Identities=30% Similarity=0.437 Sum_probs=66.1
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
...|.||++|+|.+|++++||+|++||+|+++|+|||..+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999988 99999999999999874
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=120.89 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCc
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSA 761 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~ 761 (2267)
.+...|+||++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+...
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~~~ 89 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCSCC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCccc
Confidence 456789999999999999999999999999999999999999999999999988 99999999999999998765543
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-11 Score=124.28 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+ .|..|++|++|+..+
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4789999999999999999999999999999999999999999988 99999 899999999998653
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-11 Score=164.79 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=75.4
Q ss_pred eEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeec
Q 000092 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2267)
Q Consensus 650 ~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~a 729 (2267)
+.+.+||+.+.+.+.+...... ...........++..|.|||||+|++|.|++||.|++||+|++||+|||+++|+|
T Consensus 1061 ~~~evnG~~~~v~v~~~~~~~~---~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~A 1137 (1165)
T 2qf7_A 1061 VFFELNGQPRRIKVPDRAHGAT---GAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHA 1137 (1165)
T ss_dssp EEEEETTEEEEEEEECGGGTCC---SCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEEC
T ss_pred EEEEECCEEEEEEecCcccccc---cccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEc
Confidence 5667777777777665432110 0001111123456789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 730 PASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 730 p~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
|.+|+|+.+ +++|+.|++|++|++|+
T Consensus 1138 p~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1138 EKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 999999988 99999999999999875
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=116.62 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=62.7
Q ss_pred ecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 691 ~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+|++|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 568999999999999999999999999999999999999999999988 99999999999999985
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-11 Score=124.62 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred cCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 683 NDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 683 ~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
.+.+...|+||++|+|.+|.|++||.|++||+|++||+|||+.+|+||.+|+|..+ +++|+.|.+|++|++|+
T Consensus 21 ~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 21 QSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34457789999999999999999999999999999999999999999999999987 99999999999999874
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=8.6e-11 Score=124.35 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
.+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|..+ +++|+ .|..|++|++|+..+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 579999999999999999999999999999999999999999988 99998 899999999998654
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-11 Score=120.45 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=66.2
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
.+++|..|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...+
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 47788889999999999999999999999999999999999999999888 99999999999999998754
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.1e-11 Score=164.42 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=65.2
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
..|.|||||+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|+.|++|++|
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 469999999999999999999999999999999999999999999999999 9999999999999987
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-11 Score=117.46 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=64.3
Q ss_pred eecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 690 LVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 690 l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
+-+|++|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4468999999999999999999999999999999999999999999988 9999999999999999764
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=112.82 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=61.8
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+|+|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 99999999999999999999999999999999999999999988 99999999999999998654
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-11 Score=120.50 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=61.7
Q ss_pred cCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 692 AETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 692 APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
++.+|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+.
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45799999999999999999999999999999999999999999988 999999999999998864
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=109.62 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=60.4
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDD 758 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~ 758 (2267)
+ +|.+|+|++||+|++||+|++||+|||+++|+||.+|+|..+ +++|+.|.+|++|++|+..+
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 6 999999999999999999999999999999999999999988 99999999999999998654
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-10 Score=133.12 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=129.1
Q ss_pred CCEEEeCCCcCCCCCchHHH---HHHcCCeEeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCc
Q 000092 132 VDAVWPGWGHASEIPELPDT---LSTKGIIFLGPPATSMAALGDKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPD 208 (2267)
Q Consensus 132 vDaV~pG~G~~sEn~~la~~---l~~~GI~fiGPs~eam~~lgDK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~ 208 (2267)
+|.+++=| |..-.+-++ ++..+. |.-++..+...++||..+.++++++|||+|++.. +..+.+ -|.
T Consensus 58 ~d~lisf~---s~gfpl~kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~----~~rd~~---~~~ 126 (330)
T 3t7a_A 58 CDCLISFH---SKGFPLDKAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAI----LNRDPN---NPK 126 (330)
T ss_dssp CSEEEECC---CTTCCHHHHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEE----ECCBTT---BGG
T ss_pred CCEEEEec---cCCCcHHHHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEE----EeCCCC---Ccc
Confidence 67777543 332223233 333454 4559999999999999999999999999999875 110100 000
Q ss_pred ccccccccCCHHHHHH-HHhhhCCcEEEeecCCC-------------C--CcCeEEECCHHHHHHHHHHHHhhCCCCcEE
Q 000092 209 DVYRQACVYTTEEAIA-SCQVVGYPAMIKASWGG-------------G--GKGIRKVHNDDEVRALFKQVQGEVPGSPIF 272 (2267)
Q Consensus 209 ~~~~~~~V~s~eea~~-~a~~IGyPVVIKPs~Gg-------------G--GkGIr~V~s~eEL~~a~~~~~~e~~~~~I~ 272 (2267)
+. ..+.+ ++..+ ..+.+|+|+|+||..|. | ++-++++.|.+.....-..+ .....++
T Consensus 127 ~~---~~~e~-~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v---r~~~~~i 199 (330)
T 3t7a_A 127 EC---NLIEG-EDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV---RKTGSYI 199 (330)
T ss_dssp GS---SEEEC-SSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC---CSSSCEE
T ss_pred cc---ceecc-chhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh---ccCCcEE
Confidence 00 00111 11112 24568899999999995 2 23355666543320000011 1256899
Q ss_pred EEEecc-ccceeeEEEEEcCCCCEEEeccccccc----ccccceEEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCceeee
Q 000092 273 IMKVAS-QSRHLEVQLLCDQYGNVAALHSRDCSV----QRRHQKIIEE-GPITVAPLETVKKLEQAARRLAKCVNYVGAA 346 (2267)
Q Consensus 273 VEeyI~-g~rhieVqvl~D~~G~vi~l~~Rdcsv----qrr~qKiiee-aPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~ 346 (2267)
+|||++ .++.+-|-++++ ++++-..|...+ -|++..--+. .|.. +++ +.++.|.++++++|. +++
T Consensus 200 ~QEFI~~~G~DIRv~vVG~---~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~-Lt~----eek~iA~kaa~a~G~-~v~ 270 (330)
T 3t7a_A 200 YEEFMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEVRYPVI-LNA----REKLIAWKVCLAFKQ-TVC 270 (330)
T ss_dssp EEECCCCSSEEEEEEEEST---TCEEEEEEECTTSSCBCCBCTTSCBCCEECC-CCH----HHHHHHHHHHHHTTB-SEE
T ss_pred EEeccCCCCceEEEEEECC---EEEEEEEEeCCCCCCcEEEcCCCCceeeeec-CCH----HHHHHHHHHHHHhCC-ceE
Confidence 999996 357888877765 556655553321 1222111111 1332 444 668999999999996 677
Q ss_pred EEEEEEEccCCcEEEeeeCccCcCCc
Q 000092 347 TVEYLYSMETGEYYFLELNPRLQVEH 372 (2267)
Q Consensus 347 tVEfl~d~~~g~~yfLEINpRlqgeh 372 (2267)
.||++.+ ++++|++|+|.+..+-.
T Consensus 271 GVDlLrs--~~~~~V~EVNg~~fvk~ 294 (330)
T 3t7a_A 271 GFDLLRA--NGQSYVCDVNGFSFVKN 294 (330)
T ss_dssp EEEEEEE--TTEEEEEEEEESCCCSS
T ss_pred EEEEEEE--CCccEEEEeCCCccccC
Confidence 7999998 67899999999987653
|
| >1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-09 Score=114.67 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.7
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2267)
+...+|++|.|+.+.+ ++||.|++||++++||+|||+++|.||.+|+|..+ +..|+.|+ .|+ .|++|++.+
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 4578999999999988 99999999999999999999999999999999888 67899999 898 999999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 117 ~~~ 119 (136)
T 1zko_A 117 EGE 119 (136)
T ss_dssp GGG
T ss_pred HHH
Confidence 643
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-09 Score=136.72 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=0.0
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|..|++|+.|+.++.
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 16 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------------------------------------------
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 69999999999999999999999999999999999999999888 999999999999999986543
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-08 Score=126.95 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=102.2
Q ss_pred CCceecccccc---ceEEEEEEEE------CCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000092 1884 DSFVETLEGWA---RTVVTGRARL------GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1954 (2267)
Q Consensus 1884 gSF~E~~~~~a---~~vVtG~arl------~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ar 1954 (2267)
|...|.....| .++|+|.+++ +|++|.|+++|++++ ||++++..++|+.|
T Consensus 73 ~~L~~~~r~~G~nd~gmV~g~~~l~t~e~i~G~~vvV~a~D~t~~---------------------gGS~G~~~~eKi~R 131 (758)
T 3k8x_A 73 GELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK---------------------IGSFGPQEDEFFNK 131 (758)
T ss_dssp SCEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG---------------------GGCBCHHHHHHHHH
T ss_pred CCeehhhcCCCCCCceEEEEEEEECCccccCCeEEEEEEECCccc---------------------cccCcHHHHHHHHH
Confidence 34555554444 7899999999 999999999998877 89999999999999
Q ss_pred HHHHhcccCCcEEEEecCCCCCCchhhhh-------------------------hchH----------------------
Q 000092 1955 ALMDFNREELPLFILANWRGFSGGQRDLF-------------------------EGIL---------------------- 1987 (2267)
Q Consensus 1955 ai~~a~~~~lPLv~l~d~~Gf~~G~~~e~-------------------------~gil---------------------- 1987 (2267)
+++.|.+.++|+|+|+|++|.-.+..++. .++.
T Consensus 132 a~e~A~~~~lPvI~l~dSGGARmqe~~ev~~~~~v~w~d~~~~~~G~~~ly~~q~~~~~ls~~g~~~~vi~~~~~~~ge~ 211 (758)
T 3k8x_A 132 VTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEE 211 (758)
T ss_dssp HHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEE
T ss_pred HHHHHHHcCCCEEEEecCCCcCccccchhccccccccccccchhcccceeccCHHHHHHhhhccccccceeeeeccCCce
Confidence 99999999999999999999766543320 0011
Q ss_pred -------------------HHHHHHHHHHhc--CCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCc
Q 000092 1988 -------------------QAGSTIVENLRT--YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1988 -------------------k~ga~iv~al~~--~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+..+.|..+++. ..+|+|++|+ |.+.+||||++.- .|+ ++|.+++.+++.||
T Consensus 212 r~~I~~I~G~~~~~gv~~l~~sG~iag~~s~a~~~IPqIsvV~-G~c~GGgAY~paL----~D~--vImv~~s~ifltGP 284 (758)
T 3k8x_A 212 RFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVT-CRSVGIGAYLVRL----GQR--AIQVEGQPIILTGA 284 (758)
T ss_dssp EEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEC-SCEETHHHHHHHH----TCE--EEEETTCCEESSCH
T ss_pred eeeEeeeeccccchhhhhccccchhhhhhhhhhcCCCEEEEEc-cCCchHHHHHHhh----CCE--EEEECCceEEEeCH
Confidence 111112222222 3589999999 4445556665443 376 89999999999999
Q ss_pred cchhh
Q 000092 2047 EGMIE 2051 (2267)
Q Consensus 2047 egav~ 2051 (2267)
...-.
T Consensus 285 ~vIk~ 289 (758)
T 3k8x_A 285 PAINK 289 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-08 Score=121.11 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCc----CeE
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGK----GIR 247 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGk----GIr 247 (2267)
+-+.+|++++++|||+|+|.. +++.+|+.++++++|||||+||....||| ||+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~-----------------------~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~ 60 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKV-----------------------AYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVK 60 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEE
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------ECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEE
Confidence 346789999999999999876 78999999999999999999999865555 999
Q ss_pred EECCHHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCC
Q 000092 248 KVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYG 293 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhieVqvl~D~~G 293 (2267)
++.|.+|+.++++++.... ....++||++++.++|+.+.++.|...
T Consensus 61 l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 61 LADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRAK 110 (397)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECCCEEEEECCCEEEEEEEEEEEETTT
T ss_pred EeCCHHHHHHHHHHhhhhhccCCccceEEEEEeecCCeeEEEEEEecCCC
Confidence 9999999999999887532 135899999999789999999999764
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-08 Score=100.67 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=65.7
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEccccce-----------------------------eeecCCCcEEEEe-
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCM-----------------------------PLLSPASGVLQFK- 738 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~-----------------------------~l~ap~~G~v~~i- 738 (2267)
.|.||++|+|.++.|++||.|++||+|++|+..+.+. .|+||.+|+|..+
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 4889999999999999999999999999999987765 8999999999888
Q ss_pred eCCCCccCCC-CEEEEEecCCC
Q 000092 739 MAEGQAMQAG-ELIARLDLDDP 759 (2267)
Q Consensus 739 ~~~G~~v~~G-~~La~l~~~~~ 759 (2267)
+++|+.|.+| ++|++|...+.
T Consensus 83 ~~~G~~v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVTNLNP 104 (116)
T ss_dssp CCTTCEECTTTSCCEEEECSCT
T ss_pred CCCCCEEcCCCcEEEEEECCCe
Confidence 9999999999 99999987654
|
| >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-07 Score=99.83 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=63.9
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2267)
+....|++|.|+.+.+ ++|++|++||++++||+|||+++|.||.+|+|..+ ....+.|+ .|+ -|++|++.+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence 3467899999999988 99999999999999999999999999999999988 34556775 455 899999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 108 ~~~ 110 (131)
T 1hpc_A 108 PDE 110 (131)
T ss_dssp GGG
T ss_pred HHH
Confidence 644
|
| >1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.4e-07 Score=95.47 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCcc---CCCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAM---QAGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v---~~G~-~La~l~~~~ 758 (2267)
+....|++|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.| ..|+ -|++|++.+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence 4467899999999987 99999999999999999999999999999999988 3466777 5676 899999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 108 ~~~ 110 (128)
T 1onl_A 108 MGD 110 (128)
T ss_dssp GGG
T ss_pred HHH
Confidence 644
|
| >3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-07 Score=95.75 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred CceecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe----eCCCCccC---CCC-EEEEEecCC
Q 000092 688 SKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK----MAEGQAMQ---AGE-LIARLDLDD 758 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i----~~~G~~v~---~G~-~La~l~~~~ 758 (2267)
+....|+.|.|+.+.+ ++|++|++||++++||+|||.++|.||.+|+|..+ ....+.|+ .|+ -|++|.+.+
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~ 108 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD 108 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence 3467899999999987 99999999999999999999999999999999988 35677787 676 899999887
Q ss_pred CCc
Q 000092 759 PSA 761 (2267)
Q Consensus 759 ~~~ 761 (2267)
++.
T Consensus 109 ~~~ 111 (128)
T 3a7l_A 109 ESE 111 (128)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00046 Score=80.20 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCccCHHHHHHHHHHHHHhcccC-CcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEcc-CCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNREE-LPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPM-MAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~-lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~-~g~~~G-G 2017 (2267)
.|.+.+..+....++++.+...+ .+|++-.|+|| |....+..|.+++...++|++++|.| +|.+.| |
T Consensus 16 ~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspG----------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG 85 (230)
T 3viv_A 16 KGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG----------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAG 85 (230)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSC----------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHH
Confidence 47899999999999998887654 46777789998 44566778999999999999999944 465555 6
Q ss_pred hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
+|+++++ |. ++|.|++++|..+|-
T Consensus 86 ~~ia~a~----d~--~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 86 TYIALGS----HL--IAMAPGTSIGACRPI 109 (230)
T ss_dssp HHHHHTS----SE--EEECTTCEEECCCEE
T ss_pred HHHHHhc----Cc--eeECCCCEEEeccce
Confidence 6666664 66 899999999987775
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.35 E-value=7.1e-05 Score=88.91 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=62.0
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEccc---------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMK--------------------------------------------- 722 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMK--------------------------------------------- 722 (2267)
..|.||.+|+|.+++|++||+|++||+|++|+.-.
T Consensus 23 ~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~ 102 (277)
T 2f1m_A 23 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 102 (277)
T ss_dssp EEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHH
T ss_pred EEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 46899999999999999999999999999998621
Q ss_pred --------------------------cceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCC
Q 000092 723 --------------------------MCMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDD 758 (2267)
Q Consensus 723 --------------------------M~~~l~ap~~G~v~~i-~~~G~~v~~G--~~La~l~~~~ 758 (2267)
-...|+||.+|+|..+ +++|+.|.+| ++|++|...+
T Consensus 103 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 103 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence 1258999999999988 9999999999 5899887544
|
| >3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00024 Score=89.55 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCceecCCCceeEEEEc-cCCCEEcCCCcEEEEEc---------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLV-SDGSHIDADTPYAEVEV--------------------------------------------- 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEa--------------------------------------------- 720 (2267)
...|.++.+|.|.++.| ++||.|++||+|++|++
T Consensus 121 ~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 200 (413)
T 3ne5_B 121 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 200 (413)
T ss_dssp EEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35699999999999999 99999999999999994
Q ss_pred ---cccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 721 ---MKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 721 ---MKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..-...|+||.+|+|..+ +++|+.|.+|++|++|...
T Consensus 201 ~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 201 TQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp HTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred hccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 112458999999999988 9999999999999998743
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00097 Score=76.81 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=71.8
Q ss_pred CCccCHHHHHHHHHHHHHhccc-CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hh
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE-ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GA 2018 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~-~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga 2018 (2267)
+|.+.+..+..+.+.+..+... .-||++..|||| |..-.+-.|.+++...+.|+++++. |.+.+ |+
T Consensus 45 ~G~I~~~~a~~i~~~L~~l~~~~~k~I~l~INSPG----------Gsv~a~~~I~~~i~~~~~pV~t~v~--g~AAS~g~ 112 (215)
T 2f6i_A 45 TDEINKKTADELISQLLYLDNINHNDIKIYINSPG----------GSINEGLAILDIFNYIKSDIQTISF--GLVASMAS 112 (215)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEECHHHH
T ss_pred ccEECHHHHHHHHHHHHHHHhCCCCcEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEe--eEhHhHHH
Confidence 6888888898888888766442 389999999999 4456677889999999999999998 55555 55
Q ss_pred HhhhccccCCccceeecccccEEEeeCccch
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|++++.. ... .+|.|++++++-.|.+.
T Consensus 113 ~Ia~agd--~g~--i~a~p~s~i~ih~p~~~ 139 (215)
T 2f6i_A 113 VILASGK--KGK--RKSLPNCRIMIHQPLGN 139 (215)
T ss_dssp HHHHTSC--TTC--EEECTTCEEESSCTTCS
T ss_pred HHHHcCC--ccc--EEEcCCCEEEEeccccc
Confidence 5555542 222 79999999999888654
|
| >3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=87.66 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=63.6
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc-------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM------------------------------------------- 723 (2267)
...|.||.+|+|.+++|++||+|++||+|++|+.-..
T Consensus 57 ~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~ 136 (359)
T 3lnn_A 57 LVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQS 136 (359)
T ss_dssp EEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHH
T ss_pred EEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4569999999999999999999999999999986422
Q ss_pred ---------------------------------ceeeecCCCcEEEEe-eCCCCccCC-CCEEEEEecCC
Q 000092 724 ---------------------------------CMPLLSPASGVLQFK-MAEGQAMQA-GELIARLDLDD 758 (2267)
Q Consensus 724 ---------------------------------~~~l~ap~~G~v~~i-~~~G~~v~~-G~~La~l~~~~ 758 (2267)
...|+||.+|+|..+ +.+|+.|.+ |++|++|...+
T Consensus 137 ~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 137 DYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence 257999999999998 999999999 99999987544
|
| >3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=74.12 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=55.6
Q ss_pred eecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-e---CCCCccC---CCC-EEEEEecCCCC
Q 000092 690 LVAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-M---AEGQAMQ---AGE-LIARLDLDDPS 760 (2267)
Q Consensus 690 l~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~---~~G~~v~---~G~-~La~l~~~~~~ 760 (2267)
.-..+.|.|+-+.+ ++|++|++|+++++||+|||..+|.||.+|+|..+ . ..-+.|+ .|+ =|++|.+.+++
T Consensus 26 ~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~ 105 (125)
T 3klr_A 26 FAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPS 105 (125)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGG
T ss_pred HHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHH
Confidence 34566899999877 79999999999999999999999999999999888 2 2233343 344 47777777653
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=86.58 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=61.8
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc-------------------------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM------------------------------------------- 723 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM------------------------------------------- 723 (2267)
...|.+|.+|+|.+++|++||+|++||+|++|+.-..
T Consensus 31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~ 110 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQA 110 (341)
T ss_dssp EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSS
T ss_pred EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999999999986311
Q ss_pred ------------------------------------------ceeeecCCCcEEEEe-eCCCCccCCCCE---EEEEecC
Q 000092 724 ------------------------------------------CMPLLSPASGVLQFK-MAEGQAMQAGEL---IARLDLD 757 (2267)
Q Consensus 724 ------------------------------------------~~~l~ap~~G~v~~i-~~~G~~v~~G~~---La~l~~~ 757 (2267)
...|+||.+|+|..+ +.+|+.|.+|+. |++|...
T Consensus 111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 156999999999988 999999999987 8887643
Q ss_pred C
Q 000092 758 D 758 (2267)
Q Consensus 758 ~ 758 (2267)
+
T Consensus 191 ~ 191 (341)
T 3fpp_A 191 S 191 (341)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0026 Score=73.42 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=72.0
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+... .-+|++..|+|| |....+-.|.+++...+.|+++++. |-+.+ |
T Consensus 51 ~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG----------G~v~ag~~I~~~i~~~~~pV~t~v~--G~AaS~G 118 (218)
T 1y7o_A 51 TGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG----------GSVSAGLAIVDTMNFIKADVQTIVM--GMAASMG 118 (218)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred eCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEc--cEeHHHH
Confidence 5788899999999999877653 579999999999 4455677889999999999999997 54444 6
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++... .. .+|.|+|++++-.|-+.
T Consensus 119 ~~Ia~a~d~--g~--r~a~p~a~igih~p~~g 146 (218)
T 1y7o_A 119 TVIASSGAK--GK--RFMLPNAEYMIHQPMGG 146 (218)
T ss_dssp HHHHTTSCT--TC--EEECTTCEEECCCCC--
T ss_pred HHHHHcCCc--Cc--EEEcCCcEEEEeccccc
Confidence 666666532 12 68999999999988654
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0031 Score=71.98 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
.+|.+.+..+..+.+.+..+... .-|+++..|||| |....+-.|.+.+...+.|+++++. |.+.+
T Consensus 32 l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~~~~~I~~~i~~~~~~V~t~~~--G~AaSa 99 (203)
T 3qwd_A 32 LGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG----------GSVTAGFAIYDTIQHIKPDVQTICI--GMAASM 99 (203)
T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred EcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC----------CCHHHHHHHHHHHHHhcCCcEEEEe--eeehhH
Confidence 36899999999999988887653 579999999999 4456778889999999999999998 65555
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
|+|++++.. ... .+|.|+|++++-.|-+.
T Consensus 100 g~~i~~ag~--~g~--r~~~p~a~imiHqP~~~ 128 (203)
T 3qwd_A 100 GSFLLAAGA--KGK--RFALPNAEVMIHQPLGG 128 (203)
T ss_dssp HHHHHHTSC--TTC--EEECTTCEEECCCCSSS
T ss_pred HHHHHHcCC--cCe--EEEcCCceEEEeccccc
Confidence 666666542 123 79999999999888653
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0049 Score=70.68 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+.. ..-+|++..|||| |..-.+-.|.+++...+.|+++++. |-+.+ |
T Consensus 33 ~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~--g~AaS~g 100 (208)
T 2cby_A 33 GSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG----------GSISAGMAIYDTMVLAPCDIATYAM--GMAASMG 100 (208)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHCSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEC--cEeHHHH
Confidence 688999999999999987764 4579999999999 3445677889999999999999997 55555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++. |.-..||.|++++++..|.+.
T Consensus 101 ~~Ia~ag----d~~~~~a~p~a~igih~p~~~ 128 (208)
T 2cby_A 101 EFLLAAG----TKGKRYALPHARILMHQPLGG 128 (208)
T ss_dssp HHHHHTS----CTTCEEECTTCEEECCCC---
T ss_pred HHHHhCC----CcCCEEEcCCcEEEEeccccc
Confidence 6666654 321268999999999998753
|
| >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00035 Score=86.64 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=61.8
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM-------------------------------------------- 723 (2267)
..|.+|.+|+|.+++|++||.|++||+|++|+.-..
T Consensus 44 ~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~ 123 (369)
T 1vf7_A 44 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQ 123 (369)
T ss_dssp EEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred EEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999975211
Q ss_pred -------------ceeeecCCCcEEEEe-eCCCCccCCC--CEEEEEecCC
Q 000092 724 -------------CMPLLSPASGVLQFK-MAEGQAMQAG--ELIARLDLDD 758 (2267)
Q Consensus 724 -------------~~~l~ap~~G~v~~i-~~~G~~v~~G--~~La~l~~~~ 758 (2267)
...|+||.+|+|..+ +.+|+.|.+| ++|++|...+
T Consensus 124 a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 124 SKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 358999999999888 9999999995 8999987543
|
| >3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.001 Score=71.28 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=42.2
Q ss_pred cCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 692 AETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 692 APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
...-|.|+-+.+ ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 50 q~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev 97 (143)
T 3mxu_A 50 QEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI 97 (143)
T ss_dssp HHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred HhhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 345688888766 78999999999999999999999999999999887
|
| >3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00082 Score=71.75 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=43.5
Q ss_pred ecCCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 691 VAETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 691 ~APmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.....|.|+-+.. ++|++|++||++++||+||+..+|.||.+|+|..+
T Consensus 44 Aq~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev 92 (137)
T 3tzu_A 44 AVEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV 92 (137)
T ss_dssp HHHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred HHhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence 3456789988866 79999999999999999999999999999999887
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0069 Score=76.24 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCC---C-CCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecC--CCCC--c
Q 000092 174 IGSSLIAQAANV---P-TLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASW--GGGG--K 244 (2267)
Q Consensus 174 ~~~k~laq~aGV---P-tpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~--GgGG--k 244 (2267)
+..|.++.++++ | +.|... ..+ ...++.+|+.+.++.+| |||++|+-. |+-| -
T Consensus 9 y~~K~ll~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~G 70 (425)
T 3mwd_A 9 QTGKELLYKFICTTSAIQNRFKY-----------ARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLG 70 (425)
T ss_dssp HHHHHHHHHHCCCSSCBCSTTCC-----------EEE-------CTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTT
T ss_pred HHHHHHHHHhccccCCccCCcce-----------EEe-------CCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCC
Confidence 567899999999 4 222111 011 12468899999999999 999999966 3322 3
Q ss_pred CeEEECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEe
Q 000092 245 GIRKVHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAAL 298 (2267)
Q Consensus 245 GIr~V~s~eEL~~a~~~~~~e~~--------~~~I~VEeyI~g--~rhieVqvl~D~~G~vi~l 298 (2267)
||+++.|++|+.+++.+...... -..++||+.++. .+|+-+.+..|..|.++.+
T Consensus 71 GV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~ 134 (425)
T 3mwd_A 71 LVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (425)
T ss_dssp CCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEE
Confidence 79999999999999887763321 135899999964 4899999999988777655
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0082 Score=71.34 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCccCHHHHHHHHHHHHHhc--ccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFN--REELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~--~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+. ...-+|++..|+|| |..-.|-.|.+++...+.|+++++. |.+.+ |
T Consensus 88 ~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG----------GsV~ag~aIyd~I~~~k~pV~t~v~--G~AASaG 155 (277)
T 1tg6_A 88 MGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCV--GQAASMG 155 (277)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSCSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHhcCCCEEEEEc--cEeHHHH
Confidence 57888999999888887643 34689999999999 4556777899999999999999997 55555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++. +.-..||.|++++++..|.+.
T Consensus 156 ~~Ia~Ag----d~gkr~a~P~S~ImihqP~~g 183 (277)
T 1tg6_A 156 SLLLAAG----TPGMRHSLPNSRIMIHQPSGG 183 (277)
T ss_dssp HHHHHTS----CTTCEEECTTCEEEECCCCCC
T ss_pred HHHHHCC----CcCCEEEecCCEEEEeccccc
Confidence 5555554 211279999999999999654
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0062 Score=69.43 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+... .-|+++..|+|| |..-.+-.|.+.+...+.|+.+++. |.+.+ |
T Consensus 36 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG----------G~v~~~~~I~~~i~~~~~~v~t~~~--G~AaS~g 103 (201)
T 3p2l_A 36 NGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG----------GMVTAGMGVYDTMQFIKPDVSTICI--GLAASMG 103 (201)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHhCCCeEEEEc--CEehhHH
Confidence 6889999999998888876543 579999999999 4456677899999999999999998 65555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++.. ... .+|.|+|++++-.|.+.
T Consensus 104 ~~i~~ag~--~g~--r~~~p~a~imiH~p~~~ 131 (201)
T 3p2l_A 104 SLLLAGGA--KGK--RYSLPSSQIMIHQPLGG 131 (201)
T ss_dssp HHHHHTSS--TTC--EEECTTCEEEECCCEEE
T ss_pred HHHHHcCc--cCC--EEEcCCCeEEEeccccc
Confidence 56555542 122 68999999999988754
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0075 Score=68.31 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=72.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-h
Q 000092 1941 GQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-G 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-G 2017 (2267)
+|.+.+..+..+.+.+..+.. ..-++++..|||| |..-.+-.|.+++...+.|+++++. |.+.+ |
T Consensus 32 ~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG----------G~v~a~~~I~~~i~~~~~pV~~~v~--g~AaS~g 99 (193)
T 1yg6_A 32 TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG----------GVITAGMSIYDTMQFIKPDVSTICM--GQAASMG 99 (193)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred cCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC----------CCHHHHHHHHHHHHhcCCCEEEEEe--eeHHHHH
Confidence 588889999999999886643 4679999999999 4556777889999999999999997 55555 5
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+|++++. +.-..+|.|++++++-.|.+.
T Consensus 100 ~~Ia~ag----~~~~r~a~p~s~i~ih~p~~~ 127 (193)
T 1yg6_A 100 AFLLTAG----AKGKRFCLPNSRVMIHQPLGG 127 (193)
T ss_dssp HHHHHTS----CTTCEEECTTCEEEECCCEEE
T ss_pred HHHHHCC----CcCcEEEecCcEEEEEecccc
Confidence 6665554 211269999999999998753
|
| >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.003 Score=78.06 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=61.3
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecCCC
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.-++||..| +++..++.|+.|++||+|+.|+.| +|+.+|+||.+|+|... .....|..|+.|+.|....+
T Consensus 268 ~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~-~~~~~V~~Gd~l~~ia~~~~ 341 (354)
T 3cdx_A 268 AYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG-AGPGRVTRGDAVAVVMEDYN 341 (354)
T ss_dssp GEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE-ECSSEECTTCEEEEEEEECC
T ss_pred EEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE-eCCCccCCCCEEEEEeeecC
Confidence 347899999 788889999999999999999996 89999999999998755 46788999999999976543
|
| >4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00036 Score=86.13 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
....|.+|.+|+|.+++|++||+|++||+|++|+.-
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 356799999999999999999999999999999863
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00094 Score=72.87 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEE-------------------------
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQF------------------------- 737 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~------------------------- 737 (2267)
+..|.||+.|+|+.+. +..|.|-+ |+-++...+ +..++||.+|+|..
T Consensus 7 ~~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGid 82 (154)
T 2gpr_A 7 NLKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLD 82 (154)
T ss_dssp CEEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSS
T ss_pred CCEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcc
Confidence 4679999999999984 77888887 899998887 47999999999986
Q ss_pred ----------e-eCCCCccCCCCEEEEEec
Q 000092 738 ----------K-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 738 ----------i-~~~G~~v~~G~~La~l~~ 756 (2267)
+ +++||.|.+||+|+++++
T Consensus 83 Tv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 83 TVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp GGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred hhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 3 889999999999999974
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0018 Score=71.16 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEEe---------------------
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK--------------------- 738 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~i--------------------- 738 (2267)
..++..|.||+.|+|+.+ .+..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 9 p~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHI 84 (162)
T 1ax3_A 9 EIGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHF 84 (162)
T ss_dssp TTCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEEC
T ss_pred CCCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEE
Confidence 445667999999999997 778888887 899998887 789999999999754
Q ss_pred ---------------eCCCCccCCCCEEEEEecC
Q 000092 739 ---------------MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 739 ---------------~~~G~~v~~G~~La~l~~~ 757 (2267)
+++||.|.+||+|++++++
T Consensus 85 GidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 85 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp SSSTTTTTTTTEEESCCCCSEECSEEEEEEECHH
T ss_pred CccchhcCCCccEEEEeCCCEEcCCCEEEEECHH
Confidence 6689999999999999753
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.015 Score=78.34 Aligned_cols=111 Identities=8% Similarity=-0.039 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhC-CcEEEeecCCCCCc----CeEE
Q 000092 174 IGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVG-YPAMIKASWGGGGK----GIRK 248 (2267)
Q Consensus 174 ~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IG-yPVVIKPs~GgGGk----GIr~ 248 (2267)
+..|.++.++++|..+-.. ......+ ..-++.+|+.+.++.+| ||||+||-.-.||| ||++
T Consensus 9 y~aK~ll~~~~~~~~~~~~-------~~~~~~v-------~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL 74 (829)
T 3pff_A 9 QTGKELLYKFICTTSAIQN-------RFKYARV-------TPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGV 74 (829)
T ss_dssp HHHHHHHHHHCCCSSCBCS-------TTCCEEE-------CTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEE
T ss_pred HHHHHHHHHhCcccccccc-------CCceEEe-------CCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEE
Confidence 5688999999998322100 0000001 12467899999999998 99999996644443 7889
Q ss_pred ECCHHHHHHHHHHHHhhCC--------CCcEEEEEeccc--cceeeEEEEEcCCCCEEEe
Q 000092 249 VHNDDEVRALFKQVQGEVP--------GSPIFIMKVASQ--SRHLEVQLLCDQYGNVAAL 298 (2267)
Q Consensus 249 V~s~eEL~~a~~~~~~e~~--------~~~I~VEeyI~g--~rhieVqvl~D~~G~vi~l 298 (2267)
+.|++|+.+++.+...... -..++||++++. .+|+-+.+..|..|.++.+
T Consensus 75 ~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~ 134 (829)
T 3pff_A 75 NLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (829)
T ss_dssp EECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred ECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEE
Confidence 9999999999887654321 135899999964 4899999999988777654
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.012 Score=72.80 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=87.6
Q ss_pred hCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc-------cc--eeeEEEEEcCCCCEEEec
Q 000092 229 VGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ-------SR--HLEVQLLCDQYGNVAALH 299 (2267)
Q Consensus 229 IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g-------~r--hieVqvl~D~~G~vi~l~ 299 (2267)
-+.++|+||..|+.|+||+++++.+++.+.++.. +...+||+||+. ++ ++.+-++....-. +.++
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~-----~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~-vy~y 219 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ-----GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYN-IYLY 219 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH-----TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCC-EEEC
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc-----CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCE-EEEE
Confidence 4688999999999999999999999998776532 357999999974 33 4445555543111 1111
Q ss_pred ----cccc-------------------ccccccce-EE--EecC---------------CCCCCHHHHHHHHHHHHHHHH
Q 000092 300 ----SRDC-------------------SVQRRHQK-II--EEGP---------------ITVAPLETVKKLEQAARRLAK 338 (2267)
Q Consensus 300 ----~Rdc-------------------svqrr~qK-ii--eeaP---------------a~~l~~e~~~eL~~~A~rla~ 338 (2267)
.|-| ++|..+.. .. +.+. .......+..+|.+++.....
T Consensus 220 ~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~ 299 (380)
T 3tig_A 220 REGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLS 299 (380)
T ss_dssp SCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHH
T ss_pred cCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 1112 12221100 00 0000 000113456677777666555
Q ss_pred Hc---------Cc--eeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcC
Q 000092 339 CV---------NY--VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 339 aL---------Gy--~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
++ .+ -....+||++| ++.++++||+|..++-...++ -+|.+-.++++..
T Consensus 300 a~~~~i~~~~~~~~~FEl~G~D~lid-~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavd 359 (380)
T 3tig_A 300 CLEPAISTKYLPYHSFQLFGFDFMVD-KNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAIS 359 (380)
T ss_dssp HHHHHHCCTTSSSEECEEEEEEEEEB-TTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTT
T ss_pred HHHHHhhhcccCCceEEEEeEEEEEc-CCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhcc
Confidence 42 23 26778999999 578999999999988653322 2367777777765
|
| >3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.012 Score=71.92 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc----ccceeeecCCCcEEEEeeCCCCccCCCCEEEEEecC
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM----KMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM----KM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~~ 757 (2267)
...-|+||..| ++...|+.||.|++||+|++|..+ +...+|+||.+|+|...- ..-.|.+|+.|+.|...
T Consensus 256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~-~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH-FPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE-CSSEECTTCEEEEEECB
T ss_pred CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe-CCCccCCCCEEEEEecc
Confidence 34568999999 667789999999999999999986 568999999999987652 34678899999998754
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0031 Score=69.22 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=56.1
Q ss_pred CceecCCCceeEEEEccCCCEEcC----CCcEEEEEccccceeeecCCCcEEEEe-------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDA----DTPYAEVEVMKMCMPLLSPASGVLQFK------------------------- 738 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~----G~~l~~iEaMKM~~~l~ap~~G~v~~i------------------------- 738 (2267)
..|.||+.|+|+.+. +..|.|-+ |+-++.... +..++||.+|+|..+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 459999999999975 77888877 888988887 478999999999755
Q ss_pred -----------eCCCCccCCCCEEEEEec
Q 000092 739 -----------MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 739 -----------~~~G~~v~~G~~La~l~~ 756 (2267)
+++||.|.+||+|+++++
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 778999999999999974
|
| >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0074 Score=65.49 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 693 ETPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 693 PmPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
..-|.|+-+.+ ++|++|++|+++++||++|...+|.||.+|+|..+
T Consensus 56 ~~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev 102 (155)
T 3hgb_A 56 SALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV 102 (155)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred HhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 34577877755 78999999999999999999999999999999887
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.023 Score=64.87 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-
Q 000092 1940 AGQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG- 2016 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G- 2016 (2267)
.||.+.+..+..+...+...+.+ .-||.+..|+||-.-...-+.-|..-.|-.|.+.+...+.|+.+++. |-+.+
T Consensus 33 l~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~--G~AaS~ 110 (205)
T 4gm2_A 33 LSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCL--GKAYGI 110 (205)
T ss_dssp ECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred ECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCEEEEEE--eeehhH
Confidence 47899999888887776665543 58999999999932111112226667888999999999999999998 76666
Q ss_pred hhHhhhccccCCccceeecccccEEEeeCccchh
Q 000092 2017 GAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMI 2050 (2267)
Q Consensus 2017 Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav 2050 (2267)
|+.++++.. ... .+|.|+|++-+=.|.+.+
T Consensus 111 as~il~aG~--~gk--R~~lP~a~iMIHqP~~~~ 140 (205)
T 4gm2_A 111 ACILASSGK--KGY--RFSLKNSSFCLNQSYSII 140 (205)
T ss_dssp HHHHHTTSC--TTC--EEECTTCEEEECCCCCCC
T ss_pred HHHHHhcCC--CCC--EEecCCCEEEEecCcccc
Confidence 444444432 223 688999999888886543
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.19 Score=66.18 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHhccc-CC-cEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc-hhHhh
Q 000092 1945 FPDSATKTAQALMDFNRE-EL-PLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRG-GAWVV 2021 (2267)
Q Consensus 1945 ~p~sa~K~arai~~a~~~-~l-PLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv 2021 (2267)
....+..+.++++.+... ++ -||+-.|++|.+. ... ......+..+.....|+|++|- |-+.| |.|++
T Consensus 320 ~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~---~~~----~~i~~~i~~l~~~~kPVia~v~--g~AasgG~~iA 390 (593)
T 3bf0_A 320 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV---TAS----EVIRAELAAARAAGKPVVVSMG--GMAASGGYWIS 390 (593)
T ss_dssp TSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECH---HHH----HHHHHHHHHHHHTTCCEEEEEE--EEEETHHHHTT
T ss_pred chhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCH---HHH----HHHHHHHHHHHhCCCCEEEEEC--CChHHHHHHHH
Confidence 455678888888888654 43 4666678887322 111 1234566777788899999995 55544 55555
Q ss_pred hccccCCccceeecccccEEEeeCc
Q 000092 2022 VDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2022 ~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+++ |. ++|.|++.+|..++
T Consensus 391 ~aa----D~--iva~p~a~~Gsigv 409 (593)
T 3bf0_A 391 TPA----NY--IVANPSTLTGSIGI 409 (593)
T ss_dssp TTC----SE--EEECTTCEEECCCE
T ss_pred HhC----CE--EEECCCCEeeccee
Confidence 554 77 99999999998774
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.019 Score=76.61 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=66.7
Q ss_pred cCeEEEEEEE-eecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeec---------------ccceEEE--E
Q 000092 613 EGSKYRIDMV-RRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEE---------------AAGTRLL--I 674 (2267)
Q Consensus 613 ~g~~Y~v~v~-~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~---------------~~~~~v~--v 674 (2267)
+|..+.+... ..+...+.+.+||..+.+.+... ++.+.+..+|.++.+..... .....+. .
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~ 619 (681)
T 3n6r_A 541 DGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGKI-SGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPM 619 (681)
T ss_dssp TSCEEEEEECCCTTCSEEEEEETTEEEEEEEEEE-TTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCS
T ss_pred CCcEEEEEEEecCCCeEEEEEECCEEEEEEEEEe-CCEEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCC
Confidence 4455444321 11333477888888888877655 46788888888877764321 0111111 1
Q ss_pred cCce-----------------eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 675 DGRT-----------------CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 675 ~g~t-----------------~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
.|+- +.++...-...|+||..|+|.+++|++||.|+.||+|++||
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 1111 11111222346999999999999999999999999999986
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.037 Score=64.30 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=35.5
Q ss_pred CceEEEEE---cCcccchhhhhhccCCeEEEecCCcceecchH
Q 000092 1742 ETFTLTYV---TGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781 (2267)
Q Consensus 1742 ~iptis~v---tg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~ 1781 (2267)
..|++++| .|.+.|+|++++.-||+++|.+++.++..+|.
T Consensus 67 ~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 67 KIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 109 (230)
T ss_dssp SSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEE
T ss_pred CCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccce
Confidence 36999999 99999999999999999999999987765553
|
| >3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.035 Score=68.93 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc------cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV------MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa------MKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
..-++||.+|. +...|+.||.|++||+|++|.- -.-..+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 290 ~~~v~A~~~Gl-~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~-~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 290 YRKFHAPKAGM-VEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH-FASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSSCEE-EEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE-CSSSEECTTCEEEEEEE
T ss_pred cEEEecCCCEE-EEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE-eCCCccCCCCEEEEEee
Confidence 34589999995 4589999999999999999998 346689999999988666 33377999999998864
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=57.91 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 712 DTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 712 G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
|...+.+|.|+....|.||.+|+|..+ +++|+.|++||+|++|+.... ...-..||.|..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~-~~~i~Ap~~G~V 65 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKM-IMTLNVQERGRV 65 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTE-EEEEECSSSEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecce-EEEEEcCCCEEE
Confidence 455678899999999999999999888 999999999999999986532 122235666654
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.11 Score=72.92 Aligned_cols=104 Identities=22% Similarity=0.422 Sum_probs=82.3
Q ss_pred eEEEeCCceEEEEeeecccceEEEEcCceeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeec
Q 000092 650 LLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLS 729 (2267)
Q Consensus 650 ~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~a 729 (2267)
+.+.+||+.+.+.+.+...... ..........++..|.|||||+|++|+|++||.|++||+|++||+|||+++|+|
T Consensus 1044 ~~~e~nG~~~~v~v~~~~~~~~----~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~a 1119 (1150)
T 3hbl_A 1044 IYYAMNGQARRIYIKDENVHTN----ANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQA 1119 (1150)
T ss_dssp EEEEETTEEEEEEEECCCSSSC----CCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEEC
T ss_pred EEEEECCeEEEEeccccccccc----ccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEec
Confidence 4556666666666554332110 001112245667899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 730 PASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 730 p~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
|.+|+|+.+ +++|+.|+.|++|++|+.+
T Consensus 1120 p~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1120 PFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 999999999 9999999999999999865
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.79 Score=53.18 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCCC-CCCchh---------hhhhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWRG-FSGGQR---------DLFEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~G-f~~G~~---------~e~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.+.+..+-+|+|.-.++ |+.|.. .......+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 103 (233)
T 3r6h_A 26 NVLGPTMQQALNEAIDAADRDNVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT-- 103 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 578889999999999888766666777755432 665532 11112334456778889999999999996
Q ss_pred CcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||++ +++. .|+ ++|.++++++.
T Consensus 104 G~a~GgG~~lala----cD~--~ia~~~a~f~~ 130 (233)
T 3r6h_A 104 GHAIAMGAFLLCS----GDH--RVAAHAYNVQA 130 (233)
T ss_dssp SEEETHHHHHHTT----SSE--EEECTTCCEEC
T ss_pred CcchHHHHHHHHh----CCE--EEEeCCcEEEC
Confidence 66666554 3443 477 88888888876
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=92.44 E-value=0.078 Score=51.07 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
.....|+||..|+|.++++++|+.|.+|++|+.|+.
T Consensus 41 ~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 41 KASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp SSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 345689999999999999999999999999999974
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=91.90 E-value=3.6 Score=48.98 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.++......++++.+.. ..+-+|+|.-.+ .|+.|..-. ..........++..+..+.+|+|+.|-
T Consensus 45 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 123 (277)
T 4di1_A 45 NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVT- 123 (277)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 57889999999999998865 467777776543 377664211 112233456678889999999999996
Q ss_pred CCcCCc-hhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.| |..+++. .|+ ++|.++++++.
T Consensus 124 -G~a~GgG~~Lala----cD~--ria~~~a~f~~ 150 (277)
T 4di1_A 124 -GYALGAGLTLALA----ADW--RVSGDNVKFGA 150 (277)
T ss_dssp -SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred -CeEehhHHHHHHh----CCE--EEEcCCCEEEC
Confidence 66666 4444554 477 88889988876
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.051 Score=72.52 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=59.9
Q ss_pred eeeeEeecCeEEEEEEEeecCceEEEEECCeEEEEEEEEecCCceEEEeCCceEEEEeeecccceEEEEcCceeecccCC
Q 000092 606 SQVSLNIEGSKYRIDMVRRGPGSYTLRMNESEIEAEIHTLRDGGLLMQLDGNSHVVYAEEEAAGTRLLIDGRTCLLQNDH 685 (2267)
Q Consensus 606 ~~vel~~~g~~Y~v~v~~~g~~~y~v~inG~~~~V~v~~l~dg~~~v~~~G~s~~v~~~e~~~~~~v~v~g~t~~~~~~~ 685 (2267)
..+.+.+||+.|.+++...+...... . .........+.+...+.|....+.+++. -.|.-+..-+.++...
T Consensus 614 ~~~~vevnG~~~~v~v~~~~~~~~~~-----~-~~~a~~~~~~~v~ap~~G~V~~v~V~~G---d~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 614 RQVFFELNGQLRSILVKDTQAMKEMH-----F-HPKALKDVKGQIGAPMPGKVIDIKVVAG---AKVAKGQPLCVLSAMK 684 (718)
T ss_dssp EEEEEESSSSEEEEEEECGGGTCC-----------CCCCCSSSCEECSSCEEEEEECSCTT---CCBCTTCCCEEEESSS
T ss_pred EEEEEEECCEEEEEEEeccCcccccc-----c-cccCCCCCCceEeCCCCeEEEEEEeCCC---CeeCCCCEEEEEeccc
Confidence 45778889999999887654321110 0 0000001122344445565554444321 1111111122223223
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
-...|+||..|+|.++.|++|+.|..||+|++||
T Consensus 685 me~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 685 METVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred ceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 3467999999999999999999999999999875
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.099 Score=50.02 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EEECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 3579999999999999999999999999999873
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.38 E-value=1.1 Score=53.08 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=55.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+. =...-
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~A~ellltg~~i~A~-eA~~~ 178 (267)
T 3hp0_A 100 PYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQ-EASEW 178 (267)
T ss_dssp SSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHH-HHHHH
T ss_pred CCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHHC
Confidence 4699999999999999999999999999999764432 2222333344321 0111122222 13468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
|+++.+++++++.+..+.+.|.-
T Consensus 179 GLV~~vv~~~~~~~~~~a~~la~ 201 (267)
T 3hp0_A 179 GLIDAFDAESDVLLRKHLLRLRR 201 (267)
T ss_dssp TSSSCBCSCTTHHHHHHHHHHTT
T ss_pred CCcceecCCHHHHHHHHHHHHHh
Confidence 99999997654444444444443
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.66 Score=54.12 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcc-cCCc-EEEEecCCCCCCchhhhhhchHHHHHHHHHHHhc-CCCCEEEEEccCCcCCc-hhHhhhc
Q 000092 1948 SATKTAQALMDFNR-EELP-LFILANWRGFSGGQRDLFEGILQAGSTIVENLRT-YKQPVFVYIPMMAELRG-GAWVVVD 2023 (2267)
Q Consensus 1948 sa~K~arai~~a~~-~~lP-Lv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~-~~vP~i~vI~~~g~~~G-Ga~vv~~ 2023 (2267)
+...+.++++.+.. .++- ||+-.|++|.+.. . .......+..+.. +..|+|+++- |-+.| |.|+++.
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~--~-----~~~i~~~l~~~~~~~~kPVia~v~--g~a~~gG~~lA~a 100 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVY--E-----SAEIHKKLEEIKKETKKPIYVSMG--SMAASGGYYISTA 100 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHH--H-----HHHHHHHHHHHHHHHCCCEEEEEE--EEEETHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHH--H-----HHHHHHHHHHHHHhCCCeEEEEEC--CeehHhHHHHHHh
Confidence 46777788887754 3444 5555787763221 1 1234455666666 7899999986 55544 5555555
Q ss_pred cccCCccceeecccccEEEeeCc
Q 000092 2024 SRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 2024 ~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
+|. +||.|++++|..|.
T Consensus 101 ----~D~--i~a~~~a~~g~~Gv 117 (240)
T 3rst_A 101 ----ADK--IFATPETLTGSLGV 117 (240)
T ss_dssp ----SSE--EEECTTCEEECCCC
T ss_pred ----CCe--eEECCCCeEeccce
Confidence 477 89999999988765
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.18 Score=47.26 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=36.2
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 726 ~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
.|.||.+|+|..+ +++|+.|++||+|++|+..+. ...-..|+.|.+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~-~~~i~ap~~G~v 47 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKM-EIPIVADRSGIV 47 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTE-EEEEECSSCEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCcc-EEEEECCCCcEE
Confidence 4789999999888 999999999999999987542 222335777764
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=91.15 E-value=0.13 Score=49.67 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=30.0
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
..|+||..|+|.++.+++|+.|++|++|+.||
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 46899999999999999999999999999885
|
| >2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.34 Score=59.17 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=54.8
Q ss_pred ceecCCCceeEEEEccCCCEEcCCCcEEEEEc----cccceeeecCCCcEEEEeeCCCCccCCCCEEEEEec
Q 000092 689 KLVAETPCKLLRYLVSDGSHIDADTPYAEVEV----MKMCMPLLSPASGVLQFKMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 689 ~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa----MKM~~~l~ap~~G~v~~i~~~G~~v~~G~~La~l~~ 756 (2267)
.++||..|.+. ..++.|+.|++||+|+++-- .+...+|+||.+|+|-.. ...-.|.+|+.|+.|..
T Consensus 259 ~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~-~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 259 QLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI-RSAMYVQGNEEVAILAR 328 (332)
T ss_dssp EEECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE-ECSEEECTTCEEEEEEE
T ss_pred EEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE-eCCCeeCCCCEEEEEee
Confidence 47899998555 78999999999999999965 678899999999988544 35667889999998864
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.14 E-value=6.8 Score=46.83 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=66.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh----------hhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..- ......+....++..+..+.+|+|+.|-
T Consensus 48 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 127 (286)
T 3myb_A 48 NALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVH 127 (286)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57889999999999998876 46677777544 347776431 1112234456778889999999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||+ .+++. .|+ ++|.++++++.
T Consensus 128 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 154 (286)
T 3myb_A 128 --GIATAAGCQLVAM----CDL--AVATRDARFAV 154 (286)
T ss_dssp --SCEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred --CeehHHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 6666654 44444 477 88888888775
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=91.14 E-value=5.6 Score=46.88 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=65.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh---------------hhhhchHHHHHHHHHHHhcCCCCE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR---------------DLFEGILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~---------------~e~~gilk~ga~iv~al~~~~vP~ 2004 (2267)
..+.++......++++.+.. ..+-+|+|.-.++ |+.|.. .......+....++..+..+.+|+
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (263)
T 3l3s_A 28 HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT 107 (263)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57889999999999998876 4677777755432 444421 111222344567888899999999
Q ss_pred EEEEccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2005 FVYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+.|- |.+.||++ +++. .|+ ++|.++++++.
T Consensus 108 IAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 139 (263)
T 3l3s_A 108 IALVE--GIATAAGLQLMAA----CDL--AYASPAARFCL 139 (263)
T ss_dssp EEEES--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEEEC--CEEEHHHHHHHHH----CCE--EEecCCCEEeC
Confidence 99996 66666544 4444 477 88888888876
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.14 Score=50.09 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=36.1
Q ss_pred eeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 726 PLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 726 ~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
.|.||.+|+|..+ +++|+.|++||+|++|+..... ..-..||.|.+
T Consensus 7 ~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~-~~i~Ap~~G~v 53 (84)
T 2kcc_A 7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMI-MTLNVQERGRV 53 (84)
T ss_dssp EECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCE-EEEECSSSEEE
T ss_pred eEECCCCEEEEEEECCCCCEECCCCEEEEEEeccee-EEEECCCCEEE
Confidence 4999999999888 9999999999999999865432 22235666654
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.75 E-value=5.9 Score=46.64 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=64.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh----------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL----------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e----------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..-. .....+.+..++..+..+.+|+|+.|-
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (261)
T 3pea_A 27 NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH 106 (261)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999998875 46777777544 3466664311 111223344578889999999999996
Q ss_pred cCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.|| ..+++. .|+ ++|.+++++|.
T Consensus 107 --G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (261)
T 3pea_A 107 --GAALGGGLEFAMS----CHM--RFATESAKLGL 133 (261)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred --CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 666665 444444 477 88888888775
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.23 Score=46.70 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
..|.||.+|+|..+ +++|+.|++||+|++++..+.. ..-..||.|..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~-~~i~ap~~G~v 53 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKME-NEIPSPRDGVV 53 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEE-EEEECSSSEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccce-EEEeCCCCEEE
Confidence 46899999999888 9999999999999999875432 22235677665
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.21 Score=59.05 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=59.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+.+ ...
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~e-A~~ 179 (263)
T 3lke_A 101 PKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEE-ALR 179 (263)
T ss_dssp SSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999874432 2233444555322 11111122222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++++.+..+.+++|..-+
T Consensus 180 ~GLv~~vv~~~~~l~~~a~~~a~~l 204 (263)
T 3lke_A 180 LGLIQEICENKQELQERVKNYLKAV 204 (263)
T ss_dssp HTSSSEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCcEecCChhHHHHHHHHHHHHH
Confidence 8999999986666666666665443
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=90.36 E-value=1.6 Score=51.35 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=65.9
Q ss_pred CCccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhhhh---------hchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1941 GQVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRDLF---------EGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~e~---------~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
...+.++......++++.++...+-+|+|.-.+ .|+.|..-.. .........++..+..+..|+|+.|-
T Consensus 28 ~Nal~~~~~~~L~~al~~~~~~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 106 (254)
T 3isa_A 28 RNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH- 106 (254)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 367889999999999988876677778886543 3766642110 01122345677889999999999996
Q ss_pred CCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 107 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 133 (254)
T 3isa_A 107 -GRNFGAGVDLFAA----CKW--RYCTPEAGFRM 133 (254)
T ss_dssp -SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred -CeEeecchhHHHh----CCE--EEEcCCCEEEC
Confidence 6666654 44444 477 88889988876
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=90.36 E-value=0.18 Score=48.51 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999874
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=90.33 E-value=0.25 Score=46.99 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.5
Q ss_pred ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 724 CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 724 ~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
...|.||.+|+|.++ +++|+.|++||+|++|+..+. ...-..||.|.+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~-~~~i~Ap~~G~v 56 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKM-ETEINAPTDGKV 56 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTE-EEEEECSSSEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccce-eEEEECCCCEEE
Confidence 457899999999888 999999999999999987542 122235677764
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=90.30 E-value=0.16 Score=60.30 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=53.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc-----------hHHHHHhhcc-cc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGR-EV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG-----------p~al~~~lG~-ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- ..-+-+.+|. .. .-+...+.+.+ ..
T Consensus 107 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~e-A~ 185 (275)
T 1dci_A 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADE-AL 185 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHH-HH
T ss_pred CCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHH-HH
Confidence 46999999999999999999999999999998654321 1223333443 11 01111111111 34
Q ss_pred ccCceEEEecCcHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.-|++|.++++..+....+++|
T Consensus 186 ~~GLv~~vv~~~~~l~~~a~~~ 207 (275)
T 1dci_A 186 DSGLVSRVFPDKDVMLNAAFAL 207 (275)
T ss_dssp HHTSSSEEESSHHHHHHHHHHH
T ss_pred HcCCcceecCChHHHHHHHHHH
Confidence 6899999997624444444444
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.23 E-value=9.1 Score=45.16 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh---------hhhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD---------LFEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~---------e~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
...+.++......++++.+.. ..+=+|+|.-.+ .|+.|..- ......+....++..+..+.+|+|+.|
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 109 (265)
T 3kqf_A 30 ANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAI 109 (265)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 368899999999999998865 467777776544 37766421 111223445677888999999999999
Q ss_pred ccCCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |-+.| |..+++.+ |+ ++|.+++++|.-
T Consensus 110 ~--G~a~GgG~~lalac----D~--ria~~~a~f~~p 138 (265)
T 3kqf_A 110 N--GIALGGGTELSLAC----DF--RIAAESASLGLT 138 (265)
T ss_dssp C--SEEETHHHHHHHHS----SE--EEEETTCEEECC
T ss_pred C--CeeehHHHHHHHhC----CE--EEEcCCcEEECc
Confidence 6 66666 44445544 77 888888888753
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.94 E-value=8 Score=46.27 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=66.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh----------------hhchHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL----------------FEGILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e----------------~~gilk~ga~iv~al~~~~vP 2003 (2267)
..++++......++++.+.. ..+-+|+|.-.+ .|+.|..-. .....+....++..+..+.+|
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 125 (290)
T 3sll_A 46 NAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQP 125 (290)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 58889999999999998875 467777776543 477665310 111234556788889999999
Q ss_pred EEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2004 VFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
+|+.|- |-+.||+ .+++. .|+ ++|.++++++.-+
T Consensus 126 vIAav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 160 (290)
T 3sll_A 126 VIAAIN--GAAIGGGLCLALA----CDV--RVASQDAYFRAAG 160 (290)
T ss_dssp EEEEEC--SEEETHHHHHHHH----SSE--EEEETTCEEECTT
T ss_pred EEEEEC--CeehHHHHHHHHH----CCE--EEEeCCCEEECch
Confidence 999996 6666654 44444 477 8899998887633
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.93 E-value=16 Score=43.40 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=65.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh-h------------hhchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD-L------------FEGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~-e------------~~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-.+.++-.....++++.+++ ..+-+|+|.-. +.|+.|..- + .....+....++..+..+.+|+|+
T Consensus 37 NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 116 (274)
T 4fzw_C 37 NSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVIC 116 (274)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 57899999999999998876 46677777543 347666421 0 111223345678889999999999
Q ss_pred EEccCCcCCchhH-hhhccccCCccceeecccccEEEee
Q 000092 2007 YIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2007 vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
.|- |-+.||+. +++. .|+ ++|.++++++.-
T Consensus 117 av~--G~a~GgG~~lala----cD~--ria~~~a~f~~p 147 (274)
T 4fzw_C 117 AVN--GVAAGAGATLALG----GDI--VIAARSAKFVMA 147 (274)
T ss_dssp EEC--SCEETHHHHHHHT----SSE--EEEETTCEEECC
T ss_pred EEC--CceeecCceeeec----cce--EEECCCCEEECc
Confidence 996 66666544 4444 477 889999988763
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=89.92 E-value=1.1 Score=58.88 Aligned_cols=87 Identities=7% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhccc-C-CcEEEEecCCC-CCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhc
Q 000092 1947 DSATKTAQALMDFNRE-E-LPLFILANWRG-FSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD 2023 (2267)
Q Consensus 1947 ~sa~K~arai~~a~~~-~-lPLv~l~d~~G-f~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~ 2023 (2267)
.++..+.+.++.+... + --|+.-.|++| -+.. ........+..+....+|+++++- .-+-||.|+++.
T Consensus 70 ~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~-------~~~~I~~~i~~~k~~gkpvva~~~--~aas~~y~lAsa 140 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQP-------SMQYIGKALKEFRDSGKPVYAVGE--NYSQGQYYLASF 140 (593)
T ss_dssp EEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHH-------HHHHHHHHHHHHHHTTCCEEEEES--CEEHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHhcCCeEEEEEc--cchhHHHHHHHh
Confidence 4678888888887543 3 46888899987 2211 122344555556666799999874 433345554544
Q ss_pred cccCCccceeecccccEEEeeCccc
Q 000092 2024 SRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2024 ~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
+|. +||.|++.+++.+|-+
T Consensus 141 ----ad~--i~~~P~~~vg~~g~~~ 159 (593)
T 3bf0_A 141 ----ANK--IWLSPQGVVDLHGFAT 159 (593)
T ss_dssp ----SSE--EEECTTCCEECCCCBC
T ss_pred ----CCE--EEECCCceEEEecccc
Confidence 365 9999999999999954
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=89.71 E-value=0.18 Score=48.52 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4579999999999999999999999999999863
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.60 E-value=17 Score=42.36 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=66.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-h-------hhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-L-------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e-------~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
-.++++-......+++.+++ ..+=+|+|.-.+ .|..|..- + .....+....++..+..+.+|+|+.|-
T Consensus 22 NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 99 (254)
T 3hrx_A 22 NAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVN-- 99 (254)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 58899999999999998866 566666665443 36655321 1 122334567788999999999999996
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|-+.||+ -+++. .|+ .+|.++|+++.-
T Consensus 100 G~a~GgG~~lala----cD~--ria~~~a~f~~p 127 (254)
T 3hrx_A 100 GVAAGAGMSLALW----GDL--RLAAVGASFTTA 127 (254)
T ss_dssp SEEETHHHHHHTT----CSE--EEEETTCEEECC
T ss_pred CEeeehhhhhhhc----cce--eeEcCCCEEEch
Confidence 6666654 44444 477 888888888763
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.16 Score=49.80 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=32.8
Q ss_pred CCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 686 DPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 686 d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
....|+||..|+|.++.+++|+.|..|++|+.|+..
T Consensus 38 ~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 346799999999999999999999999999999854
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=89.28 E-value=2.6 Score=49.89 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--h--------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--L--------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e--------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.+.......++++.+.. ..+-+|+|.-.+ .|+.|..- + .....+....++.++..+.+|+|+.|-
T Consensus 46 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 125 (263)
T 2j5g_A 46 LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVN 125 (263)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 46788888999999988865 467777776432 25554321 1 011223345678889999999999996
Q ss_pred cCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.||..+++.+ |+ ++|.++++++.
T Consensus 126 --G~a~GG~~Lalac----D~--ria~~~a~f~~ 151 (263)
T 2j5g_A 126 --GAALLHSEYILTT----DI--ILASENTVFQD 151 (263)
T ss_dssp --SEECSCGGGGGGC----SE--EEEETTCEECC
T ss_pred --CcchHHHHHHHhC----CE--EEEcCCCEEec
Confidence 7666776666654 77 89999998876
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=0.31 Score=50.31 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred eeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 725 MPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 725 ~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|.|+.+|+|..+ +++|+.|++||+|++|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 57899999999999 9999999999999999865
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=88.94 E-value=2.8 Score=49.37 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=66.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.+.......++++.+.+ ..+=+|+|.-.+ .|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 38 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 116 (257)
T 1szo_A 38 LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVN- 116 (257)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC-
Confidence 35788889999999988865 466777776543 366654211 011223345678889999999999996
Q ss_pred CCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||...++.+ |+ ++|.++++++.
T Consensus 117 -G~a~GG~~Lalac----D~--ria~~~a~f~~ 142 (257)
T 1szo_A 117 -GPVTNAPEIPVMS----DI--VLAAESATFQD 142 (257)
T ss_dssp -SCBCSSTHHHHTS----SE--EEEETTCEEEC
T ss_pred -CchHHHHHHHHHC----CE--EEEeCCCEEec
Confidence 7677877666664 77 89999998886
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.94 E-value=7.1 Score=45.79 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=66.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhh---hchHHHHHHHHHHHhcCCCCEEEEEccCCcCCc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLF---EGILQAGSTIVENLRTYKQPVFVYIPMMAELRG 2016 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~---~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~G 2016 (2267)
..++++......++++.+.. ..+-+|+|.-. +.|+.|..-.. .........++..+..+..|+|+.|- |-+.|
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~a~G 105 (255)
T 3p5m_A 28 NAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVH--GAAVG 105 (255)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEEC--SEEET
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeC--Ceehh
Confidence 57889999999999998865 46777777554 34776643110 02234456778889999999999996 66666
Q ss_pred h-hHhhhccccCCccceeecccccEEEe
Q 000092 2017 G-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2017 G-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
| ..+++.+ |+ ++|.++++++.
T Consensus 106 gG~~lalac----D~--~ia~~~a~f~~ 127 (255)
T 3p5m_A 106 FGCSLALAC----DL--VVAAPASYFQL 127 (255)
T ss_dssp HHHHHHHHS----SE--EEECTTCEEEC
T ss_pred hHHHHHHHC----CE--EEEcCCcEEeC
Confidence 4 4445544 77 88888888876
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=88.86 E-value=0.35 Score=56.95 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec--------chHHHHHhhccccccccccCCcccc----ccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT--------GFSALNKLLGREVYSSHMQLGGPKI----MATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt--------Gp~al~~~lG~evy~s~~~lGG~~i----~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+.|-.+ ...-|+
T Consensus 98 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~vG~~~A~-~l~ltg~~~~a~eA~~~GL 176 (254)
T 3isa_A 98 PSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQAL-SILGSARAFDADEARRIGF 176 (254)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHH-HHHTTTCEEEHHHHHHTTS
T ss_pred CCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHHcCHHHHH-HHHHhCCCCcHHHHHHCCC
Confidence 4699999999999999999999999999999765433 333444555543210 011222222 346999
Q ss_pred eEEEecCcHHHHHHHHHHHh
Q 000092 1810 VHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
+|.+++++ +..+.+.++..
T Consensus 177 v~~vv~~~-~l~~~a~~~a~ 195 (254)
T 3isa_A 177 VRDCAAQA-QWPALIDAAAE 195 (254)
T ss_dssp SSEECCGG-GHHHHHHHHHH
T ss_pred ccEEeChh-HHHHHHHHHHH
Confidence 99999754 33333444433
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=88.71 E-value=0.25 Score=49.41 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|++|+.
T Consensus 47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4678999999999999999999999999999974
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=88.66 E-value=13 Score=44.27 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=65.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h------------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~------------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++......++++.+.. ..+-+|+|.-. +.|+.|..-. . ....+....++..+..+..|+|+
T Consensus 39 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 118 (279)
T 3g64_A 39 NALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIA 118 (279)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 68899999999999998875 46777777654 3477664311 0 01122345678889999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ .+++. .|+ ++|.++++++.
T Consensus 119 av~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 148 (279)
T 3g64_A 119 ALH--GVAAGAGAVLALA----ADF--RVADPSTRFAF 148 (279)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEECTTCEEEC
T ss_pred EEc--CeeccccHHHHHh----CCE--EEEeCCCEEeC
Confidence 996 6666654 44444 477 88888888775
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=4.2 Score=47.51 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=66.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-CC-CCCCchhh--hh--------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-WR-GFSGGQRD--LF--------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-~~-Gf~~G~~~--e~--------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++-.....++++.+.+ ..+-+|+|.- .+ .|+.|..- +. ....+....++..+..+.+|+|+.|
T Consensus 22 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (250)
T 2a7k_A 22 NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV 101 (250)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57889999999999998876 4677888865 33 37766521 10 1112234567788999999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |.+.|| ..+++. .|+ ++|.+++++|.-
T Consensus 102 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~p 130 (250)
T 2a7k_A 102 D--GYAIGMGFQFALM----FDQ--RLMASTANFVMP 130 (250)
T ss_dssp C--SEEETHHHHHHTT----SSE--EEEETTCEEECC
T ss_pred C--CeEeHHHHHHHHh----CCE--EEEcCCCEEeCc
Confidence 6 666664 444544 477 889999998873
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=88.43 E-value=0.46 Score=56.41 Aligned_cols=85 Identities=19% Similarity=0.143 Sum_probs=53.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+ +=...-
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~A~~llltg~~i~A-~eA~~~ 177 (268)
T 3i47_A 99 PKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDA-TRAYSL 177 (268)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEH-HHHHHT
T ss_pred CCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHHHHHhCHHHHHHHHHcCCccCH-HHHHHc
Confidence 4699999999999999999999999999999865432 1112333333321 001111111 113468
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~L 1828 (2267)
|++|.++++ .+..+.+++|.
T Consensus 178 GLV~~vv~~-~~l~~~a~~~a 197 (268)
T 3i47_A 178 NLVQHCVPD-DTLLEFTLKYA 197 (268)
T ss_dssp TSCSEEECG-GGHHHHHHHHH
T ss_pred CCCcEeeCh-hHHHHHHHHHH
Confidence 999999975 34444444443
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=88.40 E-value=0.32 Score=53.17 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=33.6
Q ss_pred EEccCCCEEcCCCcEEEEEccccc-------eeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMC-------MPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~-------~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
.+|++||+|++||+|+++.--+.. +++.-.- .....+ ...+..|..|+.|..+
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSSCCCSCBCCEEECTTCEEEEE
T ss_pred EEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCcceEEEccCceEcCCCEEEEe
Confidence 589999999999999998742222 2222111 111222 3346678889988876
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.37 E-value=0.07 Score=53.41 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus 62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------------------------------
T ss_pred cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 467999999999999999999999999999886
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.02 E-value=14 Score=44.07 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh----------hhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+=+|+|.-.+ .|+.|..- ......+....++..+..+.+|+|+.|-
T Consensus 55 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 134 (287)
T 2vx2_A 55 NTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVN 134 (287)
T ss_dssp TCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57889999999999998876 456777776542 25544321 0111223445678889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|.+.||+ .+++. .|+ ++|.++++++.-+
T Consensus 135 --G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 163 (287)
T 2vx2_A 135 --GLATAAGCQLVAS----CDI--AVASDKSSFATPG 163 (287)
T ss_dssp --SEEETHHHHHHHH----SSE--EEEETTCEEECCG
T ss_pred --CEEEcHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 6666654 44444 477 8889999887633
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=87.84 E-value=0.38 Score=57.31 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=54.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A-~eA~~ 184 (276)
T 2j5i_A 106 AKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGG-QKAAE 184 (276)
T ss_dssp SSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEH-HHHHH
T ss_pred CCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccH-HHHHH
Confidence 4699999999999999999999999999999765432 1223444444322 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+.+|..
T Consensus 185 ~GLv~~vv~~-~~l~~~a~~~a~ 206 (276)
T 2j5i_A 185 MGLVNESVPL-AQLREVTIELAR 206 (276)
T ss_dssp HTSSSEEECH-HHHHHHHHHHHH
T ss_pred cCCccEeeCH-HHHHHHHHHHHH
Confidence 8999999964 444455555543
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=87.79 E-value=0.28 Score=48.21 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCceecCCCceeEEEEccCCC-EEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd-~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+ .|..|++|+.|+.
T Consensus 48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 457999999999999999999 8999999999984
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.76 E-value=0.52 Score=56.44 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=32.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1776 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ 1776 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.
T Consensus 119 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~ 153 (286)
T 3myb_A 119 PAPVIARVHGIATAAGCQLVAMCDLAVATRDARFA 153 (286)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEE
T ss_pred CCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEE
Confidence 46999999999999999999999999999997643
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=87.75 E-value=5.3 Score=47.24 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h-----------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F-----------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~-----------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
...++++......++++.+.. ..+-+|+|.-. +.|+.|..-. . .........++..+..+.+|+|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 104 (268)
T 3i47_A 25 HNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIA 104 (268)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 368899999999999998865 45677777543 3477764211 0 01123345678889999999999
Q ss_pred EEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |.+.|| ..+++. .|+ ++|.++++++.
T Consensus 105 av~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 134 (268)
T 3i47_A 105 MVQ--GAAFGGGAGLAAA----CDI--AIASTSARFCF 134 (268)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEC--CEEEhHhHHHHHh----CCE--EEEcCCCEEEC
Confidence 997 666664 444554 477 88888888775
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=87.56 E-value=0.39 Score=56.16 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=58.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+.+.+|... .-+...+.+. =...
T Consensus 90 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~-eA~~ 168 (243)
T 2q35_A 90 EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGK-ELAE 168 (243)
T ss_dssp CSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999999865432 1223444455322 1111122222 1346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++ +.+..+.+.+|..-+
T Consensus 169 ~GLv~~vv~-~~~l~~~a~~~a~~l 192 (243)
T 2q35_A 169 RGIPFPVVS-RQDVLNYAQQLGQKI 192 (243)
T ss_dssp TTCSSCEEC-HHHHHHHHHHHHHHH
T ss_pred cCCCCEecC-hhHHHHHHHHHHHHH
Confidence 999999996 445666666665544
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=87.48 E-value=2.9 Score=48.38 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh--------hhhchHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD--------LFEGILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~--------e~~gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.+.... -+|+|.-.+ .|+.|..- ......+....++.++..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~-~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 103 (232)
T 3ot6_A 27 NAISPDVIIAFNAALDQAEKDR-AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACP--G 103 (232)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTT-CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECC--E
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-CEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC--C
Confidence 5788899999999998887543 466664433 26666421 1112234456788889999999999996 6
Q ss_pred cCCchhH-hhhccccCCccceeecccc-cEEEe
Q 000092 2013 ELRGGAW-VVVDSRINSDHIEMYADRT-AKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa~-vv~~~~~n~d~~~~~A~p~-A~~gv 2043 (2267)
.+.||++ +++. .|+ ++|.++ ++++.
T Consensus 104 ~a~GgG~~lala----cD~--ria~~~~a~f~~ 130 (232)
T 3ot6_A 104 HAVAKGAFLLLS----ADY--RIGVAGPFSIGL 130 (232)
T ss_dssp EEETHHHHHHTT----SSE--EEEECSSCCEEC
T ss_pred EeehHHHHHHHH----CCE--EEEeCCCcEEEC
Confidence 6666544 4444 477 888887 67775
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.32 E-value=0.53 Score=55.62 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=54.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ecc---hHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LTG---FSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------ltG---p~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+. +.+ ..-+-+.+|... .-+...+.+ +=...-
T Consensus 104 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g~~~~l~r~vG~~~A~~l~ltg~~~~A-~eA~~~ 182 (263)
T 3l3s_A 104 PKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDA-DWALAA 182 (263)
T ss_dssp SSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEEEH-HHHHHH
T ss_pred CCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCH-HHHHHC
Confidence 46999999999999999999999999999987643 331 122333334321 001111111 223468
Q ss_pred CceEEEecCcHHHHHHHHHHHh
Q 000092 1808 GVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
|++|.+++ +.+..+.+++|..
T Consensus 183 GLv~~vv~-~~~l~~~a~~~a~ 203 (263)
T 3l3s_A 183 GLINRILP-EAALATHVADLAG 203 (263)
T ss_dssp TSSSEECC-HHHHHHHHHHHHH
T ss_pred CCccEEeC-HHHHHHHHHHHHH
Confidence 99999997 4455555555543
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.45 Score=56.23 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCC-cceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQ-PIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a-~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++ .+.+. |..-+-+.+|... .-+...+.+. =..
T Consensus 101 ~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~-eA~ 179 (265)
T 2ppy_A 101 PQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQ-EAL 179 (265)
T ss_dssp SSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHH-HHH
T ss_pred CCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHH-HHH
Confidence 46999999999999999999999999999999 54432 2223444555322 1111222222 234
Q ss_pred ccCceEEEecCcHHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
..|++|.+++++ +..+.+++|.
T Consensus 180 ~~GLv~~vv~~~-~l~~~a~~~a 201 (265)
T 2ppy_A 180 EIGLVNRVFPQA-ETRERTREYA 201 (265)
T ss_dssp HHTSSSEEECGG-GHHHHHHHHH
T ss_pred HCCCcceecCHH-HHHHHHHHHH
Confidence 699999999753 3344444443
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=87.21 E-value=0.64 Score=55.06 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc-----------hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-----------FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG-----------p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+.. ..-+-+.+|... .-+...+.+ +=...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a-~eA~~ 180 (265)
T 3qxi_A 102 AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSA-ERAHA 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHHH
Confidence 57999999999999999999999999999997644322 122333334321 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 181 ~GLv~~vv~~~-~l~~~a~~~ 200 (265)
T 3qxi_A 181 LGMVNVLAEPG-AALDAAIAL 200 (265)
T ss_dssp TTSCSEEECTT-CHHHHHHHH
T ss_pred CCCccEeeChh-HHHHHHHHH
Confidence 89999999754 334444444
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=87.17 E-value=0.46 Score=56.67 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=51.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe-cCCcceec-----------chHHHHHhhccccc----cccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~-~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-+-..+|.... -+...+.+.+ ..
T Consensus 112 ~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e-A~ 190 (280)
T 1pjh_A 112 SKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI-MC 190 (280)
T ss_dssp CSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH-HH
T ss_pred CCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH-HH
Confidence 46999999999999999999999999999 88764432 22334555554221 1111122211 34
Q ss_pred ccCceEEEecCc
Q 000092 1806 TNGVVHLTVSDD 1817 (2267)
Q Consensus 1806 ~nGv~d~~v~dd 1817 (2267)
.-|++|.+++++
T Consensus 191 ~~GLv~~vv~~~ 202 (280)
T 1pjh_A 191 ENGFISKNFNMP 202 (280)
T ss_dssp HTTCCSEECCCC
T ss_pred HCCCcceeeCCc
Confidence 699999999875
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=87.08 E-value=4 Score=47.88 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-h---------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-F---------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~---------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..++++......++++.+.+ ..+-+|+|.-.+ .|+.|..-. . .........++..+..+.+|+|+.|-
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 107 (256)
T 3qmj_A 28 NAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVN 107 (256)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 68899999999999998866 467777776543 366664311 0 11123446778889999999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 108 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 134 (256)
T 3qmj_A 108 --GLGVGIGATILGY----ADL--AFMSSTARLKC 134 (256)
T ss_dssp --SEEETHHHHGGGG----CSE--EEEETTCEEEC
T ss_pred --CeehhHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 6666654 44444 477 88888888776
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.08 E-value=11 Score=44.43 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=66.4
Q ss_pred CCccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh----hhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCC
Q 000092 1941 GQVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD----LFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2015 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~----e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~ 2015 (2267)
...+.++......++++.+....+-+|+|.-.+ .|+.|..- ......+....++..+..+.+|+|+.|- |-+.
T Consensus 42 ~Nal~~~~~~~L~~al~~~~~d~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~a~ 119 (264)
T 3he2_A 42 RNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAIN--GPAI 119 (264)
T ss_dssp TTCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEEC--SCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEEC--CcEE
Confidence 368899999999999998876577777776443 46666421 1223345566788889999999999997 6666
Q ss_pred chh-HhhhccccCCccceeecccccEEEe
Q 000092 2016 GGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2016 GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
||+ .+++. .|+ ++|.++++++.
T Consensus 120 GgG~~lala----cD~--ria~~~a~f~~ 142 (264)
T 3he2_A 120 GAGLQLAMQ----CDL--RVVAPDAFFQF 142 (264)
T ss_dssp THHHHHHHH----SSE--EEECTTCEEEC
T ss_pred cchhHHHHh----CCE--EEEcCCCEEEC
Confidence 654 44544 477 89999998876
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=86.88 E-value=19 Score=41.95 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=64.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhh--hhh----c---hHH--H-HHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRD--LFE----G---ILQ--A-GSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~--e~~----g---ilk--~-ga~iv~al~~~~vP~i~v 2007 (2267)
..++++......++++.+.+ ..+-+|+|.-. +.|+.|..- +.. . ... . ...++..+..+.+|+|+.
T Consensus 21 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 100 (253)
T 1uiy_A 21 NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA 100 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57889999999999998866 45666666543 347766421 100 0 111 1 456677889999999999
Q ss_pred EccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.|| ..+++. .|+ ++|.+++++|.
T Consensus 101 v~--G~a~GgG~~lal~----cD~--~ia~~~a~f~~ 129 (253)
T 1uiy_A 101 VN--GPAVAGGAGLALA----CDL--VVMDEEARLGY 129 (253)
T ss_dssp EC--SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred EC--CeeeHHHHHHHHh----CCE--EEEcCCcEEeC
Confidence 96 666664 444554 477 89999999887
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=86.84 E-value=0.4 Score=58.69 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=52.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchH--------HHHHhhccccccccccCCcccc----ccccCc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS--------ALNKLLGREVYSSHMQLGGPKI----MATNGV 1809 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~--------al~~~lG~evy~s~~~lGG~~i----~~~nGv 1809 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.-.. .+-+.+|.... ...-|-|-.+ ...-|+
T Consensus 157 ~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g~l~~~vG~~~A-~ellltG~~i~A~eA~~~GL 235 (333)
T 3njd_A 157 DKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRA-KRLLFTGDCITGAQAAEWGL 235 (333)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTCCHHHHHCHHHH-HHHHTTCCEEEHHHHHHTTS
T ss_pred CCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHCCC
Confidence 5799999999999999999999999999999765443221 12222332110 0001112122 346899
Q ss_pred eEEEecCcHHHHHHHHHHH
Q 000092 1810 VHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1810 ~d~~v~dd~e~~~~i~~~L 1828 (2267)
++.+++++ +..+.+++|.
T Consensus 236 V~~vv~~~-~l~~~a~~lA 253 (333)
T 3njd_A 236 AVEAPDPA-DLDARTERLV 253 (333)
T ss_dssp SSBCCCGG-GHHHHHHHHH
T ss_pred ccEecChH-HHHHHHHHHH
Confidence 99999743 4444444443
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.75 E-value=0.32 Score=57.93 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=56.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+.+.+.+.+ ...
T Consensus 106 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~e-A~~ 184 (275)
T 3hin_A 106 RVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAE-GVV 184 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999999764433 2233455555322 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+++|..-
T Consensus 185 ~GLv~~vv~~~-~l~~~a~~~a~~ 207 (275)
T 3hin_A 185 HGFSQYLIENG-SAYDKALELGNR 207 (275)
T ss_dssp HTSCSEEESSS-CHHHHHHHHHHH
T ss_pred CCCCCEEeChh-HHHHHHHHHHHH
Confidence 89999999754 344455555443
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=86.51 E-value=1 Score=56.91 Aligned_cols=89 Identities=21% Similarity=0.108 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...-
T Consensus 284 pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g~~~L~rlvG~~~A~ellLtG~~i~A~E-A~~~ 362 (440)
T 2np9_A 284 EKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKE-PEAR 362 (440)
T ss_dssp CCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCEETTS-GGGG
T ss_pred CCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchHHHHHHHHhhHHHHHHHHHcCCCCCHHH-HHHC
Confidence 4799999999999999999999999999998764332 1112233333211 11111222222 3578
Q ss_pred CceEEEecCcHHHHHHHHHHHhcCC
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSYVP 1832 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~LsylP 1832 (2267)
|++|.++++ .+....+..+..-++
T Consensus 363 GLV~~Vvp~-~eL~~~a~~~A~~la 386 (440)
T 2np9_A 363 LLVDEVVEP-DELDAAIERSLTRLD 386 (440)
T ss_dssp GTCSEEECH-HHHHHHHHHHHHTTC
T ss_pred CCCcEecCh-HHHHHHHHHHHHHhC
Confidence 999999974 455666667766553
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=86.48 E-value=4.7 Score=47.44 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=63.6
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhh--hhh-----------chHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD--LFE-----------GILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~--e~~-----------gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.+.....=+|+|.-. +.|+.|..- +.. ...+....++..+..+.+|+|+.
T Consensus 28 Nal~~~~~~~L~~al~~~~~d~~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 107 (261)
T 2gtr_A 28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA 107 (261)
T ss_dssp TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5788899999999998876543345666543 347777531 110 11122446677888999999999
Q ss_pred EccCCcCCchhH-hhhccccCCccceeecccccEEEeeC
Q 000092 2008 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2008 I~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|- |.+.||+. +++. .|+ ++|.++++++.-+
T Consensus 108 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe 138 (261)
T 2gtr_A 108 VN--GPAIGLGASILPL----CDV--VWANEKAWFQTPY 138 (261)
T ss_dssp EC--SCEETHHHHTGGG----SSE--EEEETTCEEECCT
T ss_pred EC--CeEeeHHHHHHHh----CCE--EEEcCCCEEeCch
Confidence 96 66666544 3443 477 8888988887633
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=86.45 E-value=18 Score=42.57 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=64.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-CC-CCCCchhh--hh------hchHHHH-HHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-WR-GFSGGQRD--LF------EGILQAG-STIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-~~-Gf~~G~~~--e~------~gilk~g-a~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.- .+ .|+.|..- +. ....+.. ..++..+..+.+|+|+.|-
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 109 (265)
T 2ppy_A 30 NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE 109 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57888999999999998866 4667777765 33 36655421 10 1122334 5677889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeeccccc-EEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTA-KGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A-~~gv 2043 (2267)
|-+.||+ .+++. .|+ ++|.+++ ++|.
T Consensus 110 --G~a~GgG~~lala----cD~--ria~~~ag~f~~ 137 (265)
T 2ppy_A 110 --GHTVGGGLEMALA----CDL--RFMGDEAGKIGL 137 (265)
T ss_dssp --SEEETHHHHHHHT----SSE--EEEETTCCCEEC
T ss_pred --CEEeeHHHHHHHh----CCE--EEEeCCCCEEEC
Confidence 6666654 44444 477 8999999 8876
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=86.35 E-value=0.52 Score=56.00 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=57.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+. ++=...
T Consensus 105 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~-a~eA~~ 183 (272)
T 1hzd_A 105 PVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD-GKEAKA 183 (272)
T ss_dssp SSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEE-HHHHHH
T ss_pred CCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCC-HHHHHH
Confidence 4699999999999999999999999999999764432 2223444445322 01111221 122346
Q ss_pred cCceEEEecCcH---HHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDL---EGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~---e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++++. ++.+.++++..-+
T Consensus 184 ~GLv~~vv~~~~l~~~~~~~a~~~a~~l 211 (272)
T 1hzd_A 184 VGLISHVLEQNQEGDAAYRKALDLAREF 211 (272)
T ss_dssp HTSCSEEECCCTTSCHHHHHHHHHHHTT
T ss_pred CCCcceecChhhhhHHHHHHHHHHHHHH
Confidence 899999998664 3455555555433
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=86.28 E-value=48 Score=40.76 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=66.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh--hh----------hchHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD--LF----------EGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~--e~----------~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
-++.++......++++.++. ..+-+|+|.-.+ .|..|..- +. .........++..+..+..|+|+
T Consensus 31 NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 110 (353)
T 4hdt_A 31 NSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVS 110 (353)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 57899999999999998876 577888887554 58877531 11 11123345677889999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ .+++. .|+ .+|.++|+++.
T Consensus 111 av~--G~a~GgG~~lal~----cD~--ria~~~a~f~~ 140 (353)
T 4hdt_A 111 IMD--GIVMGGGVGVGAH----GNV--RVVTDTTKMAM 140 (353)
T ss_dssp EEC--BEEETHHHHHHTT----SSE--EEECTTCEEEC
T ss_pred EeE--CceeecCccccCC----cCe--eccchhccccC
Confidence 996 6666654 44444 477 88888888876
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.27 E-value=0.57 Score=55.01 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=54.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+ +=...
T Consensus 91 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A-~eA~~ 169 (254)
T 3hrx_A 91 EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSA-EEALA 169 (254)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCH-HHHHH
Confidence 4699999999999999999999999999999864332 2334555555422 111111211 22346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+..|
T Consensus 170 ~GLv~~vv~~~-~l~~~a~~~ 189 (254)
T 3hrx_A 170 LGLVHRVVPAE-KLMEEALSL 189 (254)
T ss_dssp HTSCSEEECGG-GHHHHHHHH
T ss_pred CCCeEEecCcH-HHHHHHHHH
Confidence 89999999754 333444444
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=0.41 Score=57.10 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~e-A~~ 193 (278)
T 3h81_A 115 RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE-AER 193 (278)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999864422 2233444455321 11112222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+++|..
T Consensus 194 ~GLv~~vv~~~-~l~~~a~~~a~ 215 (278)
T 3h81_A 194 SGLVSRVVPAD-DLLTEARATAT 215 (278)
T ss_dssp HTSCSEEECGG-GHHHHHHHHHH
T ss_pred CCCccEEeChh-HHHHHHHHHHH
Confidence 89999999753 44455555543
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=86.26 E-value=7.3 Score=46.37 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=64.3
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--hh----c-------hHHHHHHHHHHHhcCCCCEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--FE----G-------ILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~~----g-------ilk~ga~iv~al~~~~vP~i 2005 (2267)
...++++......++++.+.+ ..+ +|+|.-.+ .|+.|..-. .. . .......++.++..+.+|+|
T Consensus 47 ~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 125 (280)
T 2f6q_A 47 KNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLI 125 (280)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 367889999999999998865 567 88876543 255554211 00 0 11234566788999999999
Q ss_pred EEEccCCcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2006 VYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2006 ~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
+.|- |-+.||+ .+++. .|+ ++|.++|+++.-
T Consensus 126 Aav~--G~a~GgG~~Lala----cD~--ria~~~a~f~~p 157 (280)
T 2f6q_A 126 AVVN--GPAVGISVTLLGL----FDA--VYASDRATFHTP 157 (280)
T ss_dssp EEEC--SCEETHHHHGGGG----CSE--EEEETTCEEECC
T ss_pred EEEC--CeeehHHHHHHHh----CCE--EEECCCcEEECc
Confidence 9996 6666654 44444 477 888888888773
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=86.11 E-value=0.92 Score=54.13 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCcccc----ccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG~~i----~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+-|-.+ ...
T Consensus 121 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~-~l~ltg~~~~A~eA~~ 199 (280)
T 2f6q_A 121 PKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT-EMLIFGKKLTAGEACA 199 (280)
T ss_dssp CSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHH-HHHHcCCCCCHHHHHH
Confidence 4699999999999999999999999999998764432 223345555543210 011222222 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+++|..
T Consensus 200 ~GLv~~vv~~~-~l~~~a~~~a~ 221 (280)
T 2f6q_A 200 QGLVTEVFPDS-TFQKEVWTRLK 221 (280)
T ss_dssp TTSCSEEECTT-THHHHHHHHHH
T ss_pred CCCcceEECHH-HHHHHHHHHHH
Confidence 99999999754 34444555543
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=86.04 E-value=6.9 Score=46.87 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhh-hh-h-----------chHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD-LF-E-----------GILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~-e~-~-----------gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+.++......++++.+.....=+|+|.-. +.|+.|..- +. . ........++.++..+.+|+|+.
T Consensus 46 Nal~~~m~~~L~~al~~~~~d~~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (291)
T 2fbm_A 46 NALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS 125 (291)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5788999999999998886544456666654 347776531 11 0 11122345677888999999999
Q ss_pred EccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.||++ +++. .|+ ++|.++|+++.
T Consensus 126 V~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 154 (291)
T 2fbm_A 126 VN--GPAIGLGASILPL----CDL--VWANEKAWFQT 154 (291)
T ss_dssp EC--SCEETHHHHTGGG----SSE--EEEETTCEEEC
T ss_pred EC--CeeecHHHHHHHh----CCE--EEEeCCCEEEC
Confidence 96 66666544 3443 487 88999998876
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.91 E-value=16 Score=42.90 Aligned_cols=94 Identities=11% Similarity=0.178 Sum_probs=63.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh--hhhhc-----hHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR--DLFEG-----ILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~--~e~~g-----ilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
-.++.+-.....++++.+.. ..+-+|+|.-.++ |+.|.. .+... .......+...+..+.+|+|+.|- |
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 104 (258)
T 4fzw_A 27 NALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVN--G 104 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEEC--S
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEc--C
Confidence 57889999999999988866 5677777765432 655532 11111 111245678889999999999996 6
Q ss_pred cCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.||+ -+++. .|+ .+|.++++++.
T Consensus 105 ~a~GgG~~lala----cD~--ria~~~a~f~~ 130 (258)
T 4fzw_A 105 YALGAGCELALL----CDV--VVAGENARFGL 130 (258)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred cceeeeeEeecc----cce--EEECCCCEEEC
Confidence 666654 44444 477 88888888876
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.68 E-value=0.52 Score=56.09 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=57.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|.... -+...+. ++-...
T Consensus 111 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~-A~eA~~ 189 (274)
T 4fzw_C 111 PKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLS-AEQAHE 189 (274)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEE-HHHHHH
T ss_pred CCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCC-HHHHHH
Confidence 4699999999999999999999999999999864432 23345555554321 1111111 122346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.+++++ +..+.+++|..-+
T Consensus 190 ~GLv~~vv~~~-~l~~~a~~~a~~l 213 (274)
T 4fzw_C 190 WGMIWQVVDDE-TLADTAQQLARHL 213 (274)
T ss_dssp TTSSSEEECGG-GHHHHHHHHHHHH
T ss_pred CCCceEEeChH-HHHHHHHHHHHHH
Confidence 99999999754 4444555554433
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=85.47 E-value=0.23 Score=47.96 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=32.1
Q ss_pred CCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 684 DHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 684 ~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
......|+||..|+|.++++++|+.|..|++|+.|+
T Consensus 42 ~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~ 77 (80)
T 1pmr_A 42 DKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp SSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred cceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 334567999999999999999999999999999876
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=85.42 E-value=0.51 Score=56.24 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...|-+.+|... .-+.+.+.+. =...
T Consensus 109 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~-eA~~ 187 (275)
T 4eml_A 109 PKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQ-EAER 187 (275)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHH-HHHH
Confidence 4699999999999999999999999999999875542 2233444444322 0011112221 1346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.+++++ +..+.+++|..
T Consensus 188 ~GLv~~vv~~~-~l~~~a~~~a~ 209 (275)
T 4eml_A 188 MGMVNTVVPVD-RLEEEGIQWAK 209 (275)
T ss_dssp HTSCSEEECGG-GHHHHHHHHHH
T ss_pred cCCccEeeCHH-HHHHHHHHHHH
Confidence 89999999754 44444444433
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=85.37 E-value=5.5 Score=47.20 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=65.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-----------hchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-----------EGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-----------~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. ....+....++.++..+.+|+|+.|
T Consensus 35 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (272)
T 3qk8_A 35 NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAI 114 (272)
T ss_dssp HEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57888999999999998865 467777776543 4777643110 1122334567888999999999999
Q ss_pred ccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2009 PMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2009 ~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
- |.+.|| ..+++. .|+ ++|.++|+++.
T Consensus 115 ~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 142 (272)
T 3qk8_A 115 R--GPAVGAGLVVALL----ADI--SVASATAKIID 142 (272)
T ss_dssp C--SEEEHHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred C--CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 7 666665 444444 477 88999998876
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=85.35 E-value=0.35 Score=57.71 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=54.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------eec-----chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------ILT-----GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~lt-----Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+ ++. |..-+-+.+|... .-+.+.+.+ +=..
T Consensus 113 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a-~eA~ 191 (279)
T 3g64_A 113 PFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRA-PEAE 191 (279)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHH
T ss_pred CCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHH
Confidence 4699999999999999999999999999998764 343 2234455555322 111111222 1234
Q ss_pred ccCceEEEecCcHHHHHHHHHH
Q 000092 1806 TNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
.-|++|.+++++ +..+.+++|
T Consensus 192 ~~GLv~~vv~~~-~l~~~a~~~ 212 (279)
T 3g64_A 192 RIGLISELTEEG-RADEAARTL 212 (279)
T ss_dssp HHTCCSEECCTT-CHHHHHHHH
T ss_pred HCCCCCEecCch-HHHHHHHHH
Confidence 689999999753 334444444
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.20 E-value=5.2 Score=47.17 Aligned_cols=95 Identities=21% Similarity=0.137 Sum_probs=65.4
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCC-CCchhh-hh------------hchHHHHHHHHHHHhcCCCCE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGF-SGGQRD-LF------------EGILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf-~~G~~~-e~------------~gilk~ga~iv~al~~~~vP~ 2004 (2267)
...++++......++++.+.+ ..+-+|+|.-. +.| +.|..- +. ....+....++..+..+..|+
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 104 (263)
T 3lke_A 25 KNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVT 104 (263)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 368889999999999998865 45666666543 346 655421 10 112234556788899999999
Q ss_pred EEEEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2005 FVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|+.|- |-+.||+ .+++. .|+ ++|.+++++|.
T Consensus 105 IAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 136 (263)
T 3lke_A 105 VALIN--GYAYGGGFNMMLA----CDR--RIALRRAKFLE 136 (263)
T ss_dssp EEEEC--SEEETHHHHGGGG----SSE--EEEETTCEEEC
T ss_pred EEEEC--CEeeHHHHHHHHH----CCE--EEEcCCCEEeC
Confidence 99996 6666654 44444 477 88999998875
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=85.10 E-value=0.49 Score=56.43 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=32.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII 1776 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ 1776 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.
T Consensus 117 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~ 151 (279)
T 3t3w_A 117 PKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFS 151 (279)
T ss_dssp SSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEE
T ss_pred CCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEe
Confidence 47999999999999999999999999999997643
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.03 E-value=14 Score=43.42 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh----hh--chHHHHHH-HHHHH-h--cCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL----FE--GILQAGST-IVENL-R--TYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e----~~--gilk~ga~-iv~al-~--~~~vP~i~vI~ 2009 (2267)
..+..+......++++.+.. ..+-+|+|.-.+ .|+.|..-. .. ...+.... ++.++ . .+..|+|+.|-
T Consensus 31 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~ 110 (265)
T 3rsi_A 31 NALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVN 110 (265)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCCCSSCEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEEC
Confidence 67889999999999998865 457777775543 477664311 00 00011123 77778 8 89999999997
Q ss_pred cCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|.++++++.
T Consensus 111 --G~a~GgG~~lala----cD~--~ia~~~a~f~~ 137 (265)
T 3rsi_A 111 --GACLGGGCEMLQQ----TDI--RVSDEHATFGL 137 (265)
T ss_dssp --SCEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred --CeeeHHHHHHHHH----CCE--EEecCCCEEEC
Confidence 6666654 44444 477 88999988875
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=84.95 E-value=27 Score=41.17 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------------hchHHHHHHHHHHHhcCCCCEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------EGILQAGSTIVENLRTYKQPVF 2005 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------~gilk~ga~iv~al~~~~vP~i 2005 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. ....+....++.++..+.+|+|
T Consensus 25 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (269)
T 1nzy_A 25 NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL 104 (269)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 57889999999999998866 467777776543 3665542110 0112234567788899999999
Q ss_pred EEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2006 VYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2006 ~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.|- |-+.|| ..+++. .|+ ++|.++++++.
T Consensus 105 Aav~--G~a~GgG~~lal~----cD~--ria~~~a~f~~ 135 (269)
T 1nzy_A 105 AAIN--GVAAGGGLGISLA----SDM--AICADSAKFVC 135 (269)
T ss_dssp EEEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEC--CeeecHHHHHHHh----CCE--EEecCCCEEeC
Confidence 9996 666665 444544 477 88888888876
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=84.93 E-value=0.5 Score=55.95 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=55.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+. =...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~-eA~~ 180 (265)
T 3kqf_A 102 PQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQ-EAKE 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999999865432 2233444455321 0111112222 2346
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+++|..
T Consensus 181 ~GLv~~vv~~-~~l~~~a~~~a~ 202 (265)
T 3kqf_A 181 YGLVEFVVPV-HLLEEKAIEIAE 202 (265)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHH
T ss_pred CCCccEEeCH-HHHHHHHHHHHH
Confidence 8999999974 444455555543
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=84.91 E-value=0.48 Score=56.43 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=50.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+ +=...
T Consensus 115 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a-~eA~~ 193 (278)
T 4f47_A 115 KKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITA-AEAKE 193 (278)
T ss_dssp SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH-HHHHH
Confidence 4799999999999999999999999999999865432 2233444444322 001111221 22346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 194 ~GLv~~vv~~~ 204 (278)
T 4f47_A 194 MGLVGHVVPDG 204 (278)
T ss_dssp TTSCSEEECTT
T ss_pred CCCceEeeChh
Confidence 89999999764
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.89 E-value=0.85 Score=53.91 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCcccc----ccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG~~i----~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|..... ..-+-|-.+ ...
T Consensus 102 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~-~l~ltg~~~~a~eA~~ 180 (265)
T 3swx_A 102 SKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAM-RWMLTADTFDAVEAHR 180 (265)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHH-HHHHcCCcCCHHHHHH
Confidence 4699999999999999999999999999999875432 122345555532200 011222222 346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 181 ~GLv~~vv~~~ 191 (265)
T 3swx_A 181 IGIVQEIVPVG 191 (265)
T ss_dssp TTSCSEEESTT
T ss_pred cCCCCEecChh
Confidence 89999999764
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.82 E-value=0.51 Score=55.54 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=53.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+...+.+ +=...
T Consensus 92 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a-~eA~~ 170 (255)
T 3p5m_A 92 PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISA-ATAFE 170 (255)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCH-HHHHH
Confidence 4699999999999999999999999999999875442 1222333344321 001111222 22347
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 171 ~GLv~~vv~~~-~l~~~a~~~ 190 (255)
T 3p5m_A 171 WGMISHITSAD-EYESVLTDV 190 (255)
T ss_dssp TTSCSEECCTT-CHHHHHHHH
T ss_pred CCCCCEeeCHH-HHHHHHHHH
Confidence 99999999754 333444444
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.78 E-value=0.59 Score=47.11 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=38.4
Q ss_pred ccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCCccccCCCCCCCC
Q 000092 722 KMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPSAVRKAEPFYGSF 772 (2267)
Q Consensus 722 KM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~~v~~~~~f~g~~ 772 (2267)
.-...|.||.+|+|..+ +++|+.|++||+|++|+..+.. ..-..||.|.+
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~-~~i~AP~~G~V 62 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKME-HTIKSPKDGTV 62 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSE-EEEECSSCEEE
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcccee-EEEECCCCeEE
Confidence 34567899999999888 9999999999999999875532 12234666654
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=84.64 E-value=21 Score=41.74 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-h------hchHH-HHHHHHHHHhcCCCCEEEEEcc
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-F------EGILQ-AGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~------~gilk-~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
...+.++......++++.+.+ ..+-+|+|.-. +.|+.|..-. . ....+ ....++.++..+.+|+|+.|-
T Consensus 24 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~- 102 (257)
T 2ej5_A 24 LNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVN- 102 (257)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEEC-
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEEC-
Confidence 367889999999999988865 46677777653 3466654311 0 01111 245677889999999999996
Q ss_pred CCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2011 MAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2011 ~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.|| ..+++. .|+ ++|.+++++|.
T Consensus 103 -G~a~GgG~~lala----cD~--ria~~~a~f~~ 129 (257)
T 2ej5_A 103 -GAAAGAGMSLALA----CDF--RLLSEKASFAP 129 (257)
T ss_dssp -SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred -ccccchhHHHHHh----CCE--EEEcCCCEEeC
Confidence 666664 444554 477 88888888876
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=84.62 E-value=0.55 Score=56.36 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=54.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|.... -+...+.+ +=...
T Consensus 123 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A-~eA~~ 201 (289)
T 3t89_A 123 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDA-KQALD 201 (289)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEH-HHHHH
T ss_pred CCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccH-HHHHH
Confidence 4699999999999999999999999999999876553 22233344443210 01111111 12346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++ +..+.+++|.
T Consensus 202 ~GLV~~vv~~~-~l~~~a~~~A 222 (289)
T 3t89_A 202 MGLVNTVVPLA-DLEKETVRWC 222 (289)
T ss_dssp HTSSSEEECGG-GHHHHHHHHH
T ss_pred CCCceEeeCHH-HHHHHHHHHH
Confidence 89999999744 3444444443
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=84.59 E-value=0.63 Score=55.82 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecC-Ccceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.++ +.+.+. |..-+-+.+|... .-+...+.+. =..
T Consensus 103 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~-eA~ 181 (289)
T 3h0u_A 103 PAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDAD-LAE 181 (289)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH-HHH
T ss_pred CCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHH
Confidence 4699999999999999999999999999998 764432 2234445555322 0111112222 234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.++++ .+..+.++++..
T Consensus 182 ~~GLV~~vv~~-~~l~~~a~~lA~ 204 (289)
T 3h0u_A 182 RYGWVNRAVPD-AELDEFVAGIAA 204 (289)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHHH
T ss_pred HCCCccEecCH-HHHHHHHHHHHH
Confidence 68999999974 445555555543
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=84.52 E-value=0.44 Score=52.50 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 693 ETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 693 PmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
-+.|+=.+.+|++||+|++||+|+++.-
T Consensus 90 ~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 90 SLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred hcCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 3455556669999999999999999873
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=84.48 E-value=8 Score=46.30 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-C-CCCc-hhhhhh-----------chHHHHHHHHHHHhcCCCCEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-G-FSGG-QRDLFE-----------GILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-G-f~~G-~~~e~~-----------gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
..+.++......++++.+.. ..+=+|+|.-.+ . |++| .-.+.. ...+....++..+..+.+|+|+
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 108 (289)
T 3h0u_A 29 NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIA 108 (289)
T ss_dssp CCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 57889999999999999876 456677776543 3 4555 211111 1122345678889999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccc-cEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRT-AKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~-A~~gv 2043 (2267)
.|- |.+.||+ .+++. .|+ ++|.++ ++++.
T Consensus 109 aV~--G~a~GgG~~Lala----cD~--ria~~~~a~f~~ 139 (289)
T 3h0u_A 109 KLR--GRARGAGSEFLLA----CDM--RFASRENAILGQ 139 (289)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEEETTTCEEEC
T ss_pred EEC--CEeehhhHHHHHh----CCE--EEEeCCCcEEeC
Confidence 996 6666654 44544 477 888888 88876
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.48 E-value=0.57 Score=55.41 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=54.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+. =...
T Consensus 100 ~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~-eA~~ 178 (263)
T 3moy_A 100 RKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAE-EAER 178 (263)
T ss_dssp CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHH-HHHH
T ss_pred CCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHH-HHHH
Confidence 4699999999999999999999999999999875532 2233444444321 0111112211 1346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 179 ~GLv~~vv~~~-~l~~~a~~~ 198 (263)
T 3moy_A 179 VGLVSRIVPAA-DLLDEALAV 198 (263)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred CCCccEecCch-HHHHHHHHH
Confidence 99999999753 344444444
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=84.47 E-value=0.59 Score=56.30 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=53.9
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |..-+-+.+|... .-+.+.+.+ +=...
T Consensus 130 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A-~eA~~ 208 (298)
T 3qre_A 130 RKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLA-EEAAQ 208 (298)
T ss_dssp SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEH-HHHHH
T ss_pred CCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCH-HHHHH
Confidence 4699999999999999999999999999999875552 2233444444322 001111111 11346
Q ss_pred cCceEEEecCcHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
-|++|.+++++ +..+.+++|
T Consensus 209 ~GLV~~vv~~~-~l~~~a~~~ 228 (298)
T 3qre_A 209 LGLVKEVVTPE-QLMPRALEY 228 (298)
T ss_dssp TTSCSEEECGG-GHHHHHHHH
T ss_pred cCCCeEecCHH-HHHHHHHHH
Confidence 89999999754 333333333
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=84.45 E-value=0.66 Score=55.64 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=55.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEec-CCcceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRL-DQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~-~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+.+ ++.+.+. |..-|-+.+|... .-+...+.+ +=..
T Consensus 106 ~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A-~eA~ 184 (287)
T 3gkb_A 106 PQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDA-ETAA 184 (287)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH-HHHH
T ss_pred CCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCH-HHHH
Confidence 469999999999999999999999999999 7654432 2234455555322 111111211 1234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.++++ .+..+.+.++..
T Consensus 185 ~~GLV~~vv~~-~~l~~~a~~lA~ 207 (287)
T 3gkb_A 185 SYGWINRALPA-DELDEYVDRVAR 207 (287)
T ss_dssp HHTSSSEEECH-HHHHHHHHHHHH
T ss_pred HCCCCcEEeCh-hHHHHHHHHHHH
Confidence 68999999974 455555555543
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=84.34 E-value=32 Score=41.37 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=57.8
Q ss_pred ccCHHHHHHHHHHHHHhcc------cCCcEEEEecCC-CCCCchhhh--h--------hchHHHHHH---HHHHH---hc
Q 000092 1943 VWFPDSATKTAQALMDFNR------EELPLFILANWR-GFSGGQRDL--F--------EGILQAGST---IVENL---RT 1999 (2267)
Q Consensus 1943 ~~~p~sa~K~arai~~a~~------~~lPLv~l~d~~-Gf~~G~~~e--~--------~gilk~ga~---iv~al---~~ 1999 (2267)
.+.++-.....++++.+.. ..+-+|+|.-.+ .|+.|..-. . .....+... .+..+ ..
T Consensus 59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (305)
T 3m6n_A 59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG 138 (305)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788888888888887764 467778776543 377664211 0 011112222 23333 24
Q ss_pred CCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+.+|+|+.|- |-+.|| ..+++. .|+ ++|.++|+++.
T Consensus 139 ~~kPvIAaV~--G~a~GgG~~Lala----cD~--ria~~~a~f~~ 175 (305)
T 3m6n_A 139 ARAHSIALVQ--GNALGGGFEAALS----CHT--IIAEEGVMMGL 175 (305)
T ss_dssp TTCEEEEEEC--SCEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CCCCEEEEEC--CEeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 6899999996 666664 444554 377 88888888876
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=84.13 E-value=0.95 Score=51.75 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred ceEEEEEcCcccchhhhhhccCCe--EEEecCCcceecchHH--------------------------HHHhhccccccc
Q 000092 1743 TFTLTYVTGRTVGIGAYLARLGMR--CIQRLDQPIILTGFSA--------------------------LNKLLGREVYSS 1794 (2267)
Q Consensus 1743 iptis~vtg~~~G~gAyl~~lgd~--~I~~~~a~i~ltGp~a--------------------------l~~~lG~evy~s 1794 (2267)
.|+++++.|.+.++|+|++.-||. ++|.+++.+++..|.. +.+.+|+..-.-
T Consensus 86 ~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i 165 (208)
T 2cby_A 86 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165 (208)
T ss_dssp SCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 488999999999999999999998 8999999887765531 122223221000
Q ss_pred cccCCccccc-----cccCceEEEecCcHHHHHHHHHH
Q 000092 1795 HMQLGGPKIM-----ATNGVVHLTVSDDLEGISAILKW 1827 (2267)
Q Consensus 1795 ~~~lGG~~i~-----~~nGv~d~~v~dd~e~~~~i~~~ 1827 (2267)
...+..-.++ .+.|++|.+..+..+.+++++..
T Consensus 166 ~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~~~ 203 (208)
T 2cby_A 166 EADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQLEH 203 (208)
T ss_dssp HHHHHTTCEEEHHHHHHHTSCSEECSCC----------
T ss_pred HHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHHHh
Confidence 0112222232 25799999988888877776654
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=83.79 E-value=0.59 Score=57.26 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=55.6
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEe-cCCcceec-----------chHHHHHhhcccc----ccccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQR-LDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~-~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+|||..++..||++|+. +++.+.+. |..-|-+.+|... .-+...+. ++=..
T Consensus 167 ~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~-A~eA~ 245 (334)
T 3t8b_A 167 PKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYT-AEQMH 245 (334)
T ss_dssp SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEE-HHHHH
T ss_pred CCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCC-HHHHH
Confidence 47999999999999999999999999999 88765432 2334444444322 11111111 12234
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|+++.++++ .+..+.+++|..
T Consensus 246 ~~GLV~~vv~~-~~l~~~a~~~A~ 268 (334)
T 3t8b_A 246 QMGAVNAVAEH-AELETVGLQWAA 268 (334)
T ss_dssp HHTSCSEEECG-GGHHHHHHHHHH
T ss_pred HCCCCcEecCH-HHHHHHHHHHHH
Confidence 68999999975 344444555433
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=83.66 E-value=5.2 Score=47.04 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hh--------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LF--------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~--------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.. ..+-+|+|.-.. .|+.|..- +. ....+....++.++..+.+|+|+.|-
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (260)
T 1sg4_A 26 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 105 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 47888899999999988865 457777777652 37766431 11 11123345677889999999999996
Q ss_pred cCCcCCchh-HhhhccccCCccceeecc--cccEEEe
Q 000092 2010 MMAELRGGA-WVVVDSRINSDHIEMYAD--RTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa-~vv~~~~~n~d~~~~~A~--p~A~~gv 2043 (2267)
|.+.||+ .+++. .|+ ++|. ++++++.
T Consensus 106 --G~a~GgG~~lala----cD~--~ia~~~~~a~f~~ 134 (260)
T 1sg4_A 106 --GACPAGGCLVALT----CDY--RILADNPRYCIGL 134 (260)
T ss_dssp --EEBCHHHHHHHTT----SSE--EEEECCTTCCBSC
T ss_pred --CeeehHHHHHHHh----CCE--EEEecCCCCEEeC
Confidence 6666654 44444 476 7777 7777654
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=83.56 E-value=5.5 Score=47.34 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.++ ..+-+|+|.-. +.|+.|..-. .....+....++..+..+.+|+|+.|-
T Consensus 38 Nal~~~~~~~L~~al~~~d-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~-- 114 (275)
T 3hin_A 38 NALNDGLMAALKDCLTDIP-DQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALK-- 114 (275)
T ss_dssp TCBCHHHHHHHHHHTSSCC-TTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHhC-cCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC--
Confidence 6889999999999999885 57777777544 3476664211 111234456778889999999999997
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|-+.||+ .+++. .|+ ++|.++++++.-+
T Consensus 115 G~a~GgG~~lala----cD~--ria~~~a~f~~pe 143 (275)
T 3hin_A 115 GAVIGGGLELACA----AHI--RVAEASAYYALPE 143 (275)
T ss_dssp SEEETHHHHHHHH----SSE--EEEETTCEEECGG
T ss_pred CeeehHHHHHHHh----CCE--EEEcCCCEEECch
Confidence 6666654 44444 477 8888888887643
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=83.51 E-value=5.5 Score=48.61 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=65.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--h---------------------------------
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--E--------------------------------- 1984 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--~--------------------------------- 1984 (2267)
..+..+......++++.++. ..+-+|+|.-.+ .|+.|..-.. .
T Consensus 57 NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (333)
T 3njd_A 57 NAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDP 136 (333)
T ss_dssp TCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCH
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccccccccccccccccccccccccccch
Confidence 57888999999999998875 567777775543 4666642100 0
Q ss_pred ----chHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeCc
Q 000092 1985 ----GILQAGSTIVENLRTYKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEP 2046 (2267)
Q Consensus 1985 ----gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~p 2046 (2267)
........++.++..+.+|+|+.|- |-+.|| ..+++. +|+ ++|.+++++|.-+.
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~--G~a~GgG~~Lala----cD~--rias~~a~f~~pe~ 195 (333)
T 3njd_A 137 MVDYQMMSRFVRGFASLMHCDKPTVVKIH--GYCVAGGTDIALH----ADQ--VIAAADAKIGYPPM 195 (333)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSSCEEEEEC--SEEETHHHHHHTT----SSE--EEECTTCEEECGGG
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEC--CEEeHHHHHHHHh----CCE--EEECCCCeeechhh
Confidence 1122234456778889999999996 666664 444444 487 89999999887543
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.45 E-value=0.45 Score=48.05 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCceecCCCceeEEEEccCCCEE-cCCCcEEEEEcc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHI-DADTPYAEVEVM 721 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V-~~G~~l~~iEaM 721 (2267)
...|+||..|+|.++++++|+.| ..|++|+.|+.-
T Consensus 50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 46799999999999999999998 999999999853
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=83.41 E-value=1.2 Score=48.89 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=31.7
Q ss_pred EccCCCEEcCCCcEEEEEcc-------ccceeeecCCCcEEEEe-eCCCCccCCCC-EEEEEe
Q 000092 702 LVSDGSHIDADTPYAEVEVM-------KMCMPLLSPASGVLQFK-MAEGQAMQAGE-LIARLD 755 (2267)
Q Consensus 702 ~V~~Gd~V~~G~~l~~iEaM-------KM~~~l~ap~~G~v~~i-~~~G~~v~~G~-~La~l~ 755 (2267)
+|++||+|++||+|+++.-- .+..++.-.-......+ ...| .+..|+ .|..+.
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (161)
T 1f3z_A 99 IAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTVGETPVIRIK 160 (161)
T ss_dssp CSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEESCGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred EEeCcCEECCCCEEEEECHHHHHhcCCCCeEEEEEECCcccceEEeccc-eEeeCCcEEEEEE
Confidence 99999999999999998732 23344443332222222 2234 465554 677653
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=83.40 E-value=0.9 Score=53.80 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=50.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+-+.+|... .-+.+.+.+.+ ...
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~e-A~~ 177 (266)
T 3fdu_A 99 SKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAET-ALQ 177 (266)
T ss_dssp CSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHH-HHH
T ss_pred CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHH-HHH
Confidence 4699999999999999999999999999999864432 2233445555432 11112222222 346
Q ss_pred cCceEEEec
Q 000092 1807 NGVVHLTVS 1815 (2267)
Q Consensus 1807 nGv~d~~v~ 1815 (2267)
-|++|.+++
T Consensus 178 ~GLv~~vv~ 186 (266)
T 3fdu_A 178 AGLVNEIVE 186 (266)
T ss_dssp TTSCSEECS
T ss_pred CCCHHHHHH
Confidence 899999997
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=83.31 E-value=0.28 Score=47.28 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 4579999999999999999999999999999874
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=83.04 E-value=0.67 Score=55.31 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=58.8
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+.+. |..-|-+.+|... .-+...+.+.+ ...
T Consensus 115 ~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~e-A~~ 193 (277)
T 4di1_A 115 PKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEE-ALA 193 (277)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH-HHH
Confidence 4699999999999999999999999999999865432 1233444444321 01111122221 346
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
-|++|.++++ .+..+.+++|..-+
T Consensus 194 ~GLV~~vv~~-~~l~~~a~~~a~~l 217 (277)
T 4di1_A 194 LGLIDDMVAP-DDVYDSAVAWARRY 217 (277)
T ss_dssp HTSCSEEECG-GGHHHHHHHHHHTT
T ss_pred CCCccEEeCh-hHHHHHHHHHHHHH
Confidence 8999999974 45666777776654
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.83 E-value=0.8 Score=55.67 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=40.4
Q ss_pred EEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 701 YLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 701 ~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|+.|+.-..=.....|++- -+..|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 9 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 9 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ----CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 344555544444455666665 4678999999999999 9999999999999999543
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=82.82 E-value=16 Score=43.42 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh--hhhc-----hH-HHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD--LFEG-----IL-QAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~--e~~g-----il-k~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.++. ..+-+|+|.-.++ |+.|..- +... .. ..... +..+..+.+|+|+.|-
T Consensus 47 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~-~~~l~~~~kPvIAav~-- 123 (278)
T 3h81_A 47 NALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFAT-WGKLAAVRTPTIAAVA-- 123 (278)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGG-GHHHHTCCSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHH-HHHHHhCCCCEEEEEC--
Confidence 68899999999999998865 4677787765432 7666431 1100 00 01111 5678889999999996
Q ss_pred CcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2012 AELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|-+.|| ..+++. .|+ ++|.++++++.
T Consensus 124 G~a~GgG~~Lala----cD~--ria~~~a~f~~ 150 (278)
T 3h81_A 124 GYALGGGCELAMM----CDV--LIAADTAKFGQ 150 (278)
T ss_dssp BEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CeeehHHHHHHHH----CCE--EEEcCCCEEEC
Confidence 666665 444554 477 88888888875
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=82.78 E-value=17 Score=42.58 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=62.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hhh------chHHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE------GILQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~~------gilk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
..+.++......++++.+.+ .++-+|+|.-.+ .|+.|..- +.. ...+.. .++..+..+..|+|+.|-
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~-- 103 (258)
T 2pbp_A 27 NALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVN-- 103 (258)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEc--
Confidence 57889999999999998865 466677776532 25555421 100 000112 567788999999999996
Q ss_pred CcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2012 AELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2012 g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|-+.||+ .+++. .|+ ++|.+++++|.-
T Consensus 104 G~a~GgG~~lala----cD~--~ia~~~a~f~~p 131 (258)
T 2pbp_A 104 GLALGGGFELALS----CDL--IVASSAAEFGFP 131 (258)
T ss_dssp SEEETHHHHHHHT----SSE--EEEETTCEEECG
T ss_pred CEEEhHHHHHHHh----CCE--EEEcCCCEEECc
Confidence 6666654 44544 477 888899888763
|
| >2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.74 E-value=0.58 Score=52.61 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=39.8
Q ss_pred ccCCCEEcCCCcEEEEEccccceeeecCCCcEEEE-----------------------------eeCCCCccCCCCEEE
Q 000092 703 VSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQF-----------------------------KMAEGQAMQAGELIA 752 (2267)
Q Consensus 703 V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~-----------------------------i~~~G~~v~~G~~La 752 (2267)
|++|+.|++||+|+ =...+.|..+|+|.+ +|++|+.|++|+.|.
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 79999999999999 467889999999975 789999999999987
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=82.65 E-value=5.8 Score=46.63 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch-
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG- 2017 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG- 2017 (2267)
...+.++......++++.+.. ..+=+|+|.-. +.|+.|..-..-........+...+..+..|+|+.|- |-+.||
T Consensus 30 ~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~--G~a~GgG 107 (256)
T 3pe8_A 30 RNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAIN--GAAVTGG 107 (256)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEEC--SEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEEC--CeeechH
Confidence 368889999999999998865 45666666543 4477765321110001112233456678899999997 666664
Q ss_pred hHhhhccccCCccceeecccccEEEe
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
..+++. .|+ ++|.++++++.
T Consensus 108 ~~lala----cD~--~ia~~~a~f~~ 127 (256)
T 3pe8_A 108 LELALY----CDI--LIASENAKFAD 127 (256)
T ss_dssp HHHHHH----SSE--EEEETTCEEEC
T ss_pred HHHHHh----CCE--EEEcCCCEEEC
Confidence 444554 477 88899988875
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=82.60 E-value=0.6 Score=49.51 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCC-EEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd-~V~~G~~l~~iEa 720 (2267)
...|.||..|+|.+++|++|| .|+.||+|++|+.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 457999999999999999998 8999999999985
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.53 E-value=7.8 Score=45.81 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=66.5
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-CCCCchhh-hh----------hchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-GFSGGQRD-LF----------EGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-Gf~~G~~~-e~----------~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.++...+-+|+|.-.+ .|+.|..- +. .........++..+..+.+|+|+.|-
T Consensus 29 Nal~~~~~~~L~~al~~~~~d~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 108 (267)
T 3hp0_A 29 NTINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVR 108 (267)
T ss_dssp TCBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 57888999999999998876567778886543 37666421 10 11234456788889999999999997
Q ss_pred cCCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 2010 MMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2010 ~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|.+.| |.-+++. .|+ ++|.++|+++.-
T Consensus 109 --G~a~GgG~~lala----cD~--ria~~~a~f~~p 136 (267)
T 3hp0_A 109 --GKVNAGGLGFVSA----TDI--AIADQTASFSLS 136 (267)
T ss_dssp --SEEETTHHHHHHH----SSE--EEECTTCEEECC
T ss_pred --CEEeehHHHHHHh----CCE--EEEcCCCEEECc
Confidence 66665 4444554 477 888888888763
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=82.52 E-value=12 Score=44.39 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh-h-----chHH---HHHHHHHHHh---cCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF-E-----GILQ---AGSTIVENLR---TYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~-~-----gilk---~ga~iv~al~---~~~vP~i~v 2007 (2267)
..+.++......++++.+.+ ..+-+|+|.-.+ .|+.|..-.. . .... ....++..+. .+.+|+|+.
T Consensus 42 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAa 121 (278)
T 4f47_A 42 NALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAA 121 (278)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------CTTCBTTTTBSCCCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 58889999999999998865 567777775543 4776643111 0 0000 1112334455 788999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+ .+++. .|+ ++|.++++++.
T Consensus 122 v~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 150 (278)
T 4f47_A 122 VE--GPAIAGGTEILQG----TDI--RVAAESAKFGI 150 (278)
T ss_dssp EC--SEEETHHHHHHTT----CSE--EEEETTCEEEC
T ss_pred EC--CEEehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 96 6666654 44444 477 88888888875
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.50 E-value=0.53 Score=48.40 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCceecCCCceeEEEEccCCC-EEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGS-HIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd-~V~~G~~l~~iEa 720 (2267)
...|+||..|+|.+++|++|+ .|..|++|++|+.
T Consensus 50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 457999999999999999999 8999999999984
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=82.21 E-value=2.1 Score=42.83 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCccEEEEECchHHHHHHHHHHHHcC-CcccccccceeEEEEEeccCCCCC-Chhhh-hccEEEEccCCCCCCCccCHHH
Q 000092 46 KPIHSILIANNGMAAVKFIRSIRTWA-YETFGTEKAILLVAMATPEDMRIN-AEHIR-IADQFVEVPGGTNNNNYANVQL 122 (2267)
Q Consensus 46 ~~~kkVLIan~G~~Av~iIrsaR~lG-~~v~~~~~~i~~v~~~t~~D~~~~-a~~vr-~ADe~v~vp~~~~~~~Y~dvd~ 122 (2267)
.++++|+|+|.|.++..+++.+.+.| ++++ ++ |.+.. ..... .--..+.. ++.+.+.
T Consensus 3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-----------~~--~r~~~~~~~~~~~~~~~~~~-------d~~~~~~ 62 (118)
T 3ic5_A 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVT-----------VA--DHDLAALAVLNRMGVATKQV-------DAKDEAG 62 (118)
T ss_dssp TTCEEEEEECCSHHHHHHHHHHHHCSSEEEE-----------EE--ESCHHHHHHHHTTTCEEEEC-------CTTCHHH
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCceEE-----------EE--eCCHHHHHHHHhCCCcEEEe-------cCCCHHH
Confidence 35689999999999999999999998 6654 23 21111 11111 11123322 3445566
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEe
Q 000092 123 IVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFL 160 (2267)
Q Consensus 123 Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fi 160 (2267)
+.++.+ ++|.|+-..+.... ..+.+.+.+.|+.++
T Consensus 63 ~~~~~~--~~d~vi~~~~~~~~-~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 63 LAKALG--GFDAVISAAPFFLT-PIIAKAAKAAGAHYF 97 (118)
T ss_dssp HHHHTT--TCSEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred HHHHHc--CCCEEEECCCchhh-HHHHHHHHHhCCCEE
Confidence 666553 68998866543221 234455556666654
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=82.15 E-value=1.2 Score=52.51 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-c----------c-hHHHHHhhccccc----cccccCCcccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-T----------G-FSALNKLLGREVY----SSHMQLGGPKIMA 1805 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-t----------G-p~al~~~lG~evy----~s~~~lGG~~i~~ 1805 (2267)
..|+|+.|.|.|+| |..++..||++|+.+++.+.+ . | ..-+-+.+|.... -+...+.+.+ ..
T Consensus 108 ~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~e-A~ 185 (257)
T 1szo_A 108 EVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDART-AL 185 (257)
T ss_dssp CSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHH-HH
T ss_pred CCcEEEEECCchHH-HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH-HH
Confidence 46999999999995 899999999999999987666 1 2 1234555554321 1111122222 34
Q ss_pred ccCceEEEecCcHHHHHHHHHHHh
Q 000092 1806 TNGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1806 ~nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
.-|++|.+++ +.+....+.+|..
T Consensus 186 ~~GLv~~vv~-~~~l~~~a~~~a~ 208 (257)
T 1szo_A 186 DYGAVNEVLS-EQELLPRAWELAR 208 (257)
T ss_dssp HHTSCSEEEC-HHHHHHHHHHHHH
T ss_pred HCCCceEEeC-hHHHHHHHHHHHH
Confidence 6899999996 4444455555443
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=82.14 E-value=22 Score=41.77 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchhh-hh-h-----chHHHHHHHHHHHhcCCCCEEEEEccCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQRD-LF-E-----GILQAGSTIVENLRTYKQPVFVYIPMMA 2012 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~~-e~-~-----gilk~ga~iv~al~~~~vP~i~vI~~~g 2012 (2267)
..+.++......++++.++. ..+-+|+|.-.++ |+.|..- +. . ...+....++.++..+.+|+|+.|- |
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~--G 109 (263)
T 3moy_A 32 NALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVA--G 109 (263)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEEC--B
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEEC--C
Confidence 57889999999999998865 4677777766432 6665421 10 0 0011233467788999999999996 6
Q ss_pred cCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2013 ELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2013 ~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
-+.||+ .+++. .|+ ++|.++++++.
T Consensus 110 ~a~GgG~~lala----cD~--~ia~~~a~f~~ 135 (263)
T 3moy_A 110 YALGGGCELAML----CDL--VIAADTARFGQ 135 (263)
T ss_dssp EEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EeehHHHHHHHH----CCE--EEecCCCEEeC
Confidence 666654 44444 477 88888888875
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=81.77 E-value=2.2 Score=45.89 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=66.8
Q ss_pred cEEEEECc----hHHHHHHHHHHHHcCCcccccccce--eEE-EEEeccCCCCCChhhhhccEEE-EccCCCCCCCccCH
Q 000092 49 HSILIANN----GMAAVKFIRSIRTWAYETFGTEKAI--LLV-AMATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANV 120 (2267)
Q Consensus 49 kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i--~~v-~~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~dv 120 (2267)
++|.|+|. |-.+..+++.+++.||+++..+... +.+ .+-++.+...- ..-+|-.+ .+|. ..+
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el---~~~~Dlvii~vp~-------~~v 83 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADV---PEKVDMVDVFRNS-------EAA 83 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTC---SSCCSEEECCSCS-------THH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHc---CCCCCEEEEEeCH-------HHH
Confidence 57999998 6789999999999999877433332 221 12222222110 11234433 3332 235
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 121 QLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 121 d~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
..+++-|.+.++.+||.-.|.. ..++.+.+++.|+.++||.---+
T Consensus 84 ~~v~~~~~~~g~~~i~i~~~~~--~~~l~~~a~~~Gi~~igpnc~g~ 128 (145)
T 2duw_A 84 WGVAQEAIAIGAKTLWLQLGVI--NEQAAVLAREAGLSVVMDRCPAI 128 (145)
T ss_dssp HHHHHHHHHHTCCEEECCTTCC--CHHHHHHHHTTTCEEECSCCHHH
T ss_pred HHHHHHHHHcCCCEEEEcCChH--HHHHHHHHHHcCCEEEcCCeeeE
Confidence 6666666678899998655433 45677888889999999875443
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=81.74 E-value=6.8 Score=46.85 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=65.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh-hhhc-------------hHHHHHHHHHHHhcCCCCE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD-LFEG-------------ILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~-e~~g-------------ilk~ga~iv~al~~~~vP~ 2004 (2267)
..+.++......++++.+.. ..+=+|+|.-.. .|+.|..- +... .......++.++..+.+|+
T Consensus 30 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 109 (287)
T 3gkb_A 30 NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVT 109 (287)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57889999999999998875 467788886654 37766431 1110 0112345788899999999
Q ss_pred EEEEccCCcCCch-hHhhhccccCCccceeeccc-ccEEEe
Q 000092 2005 FVYIPMMAELRGG-AWVVVDSRINSDHIEMYADR-TAKGNV 2043 (2267)
Q Consensus 2005 i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p-~A~~gv 2043 (2267)
|+.|- |-+.|| ..+++. .|+ ++|.+ +|+++.
T Consensus 110 IAaV~--G~a~GgG~~lala----cD~--ria~~~~a~f~~ 142 (287)
T 3gkb_A 110 IVKLA--GKARGGGAEFVAA----ADM--AFAAAETAGLGQ 142 (287)
T ss_dssp EEEEC--SEEETHHHHHHHH----SSE--EEEETTTCEEEC
T ss_pred EEEEC--CeeehHHHHHHHH----CCE--EEEeCCCcEEEC
Confidence 99997 666664 444554 377 88888 888876
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=81.60 E-value=11 Score=44.50 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=60.3
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh-hhc---------------hHHHHHHHHHHHhcCCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL-FEG---------------ILQAGSTIVENLRTYKQP 2003 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e-~~g---------------ilk~ga~iv~al~~~~vP 2003 (2267)
..++++......++++.+.. ..+=+|+|.-.+ .|+.|..-. ... .+.....++..+..+.+|
T Consensus 33 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 112 (274)
T 3tlf_A 33 NALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKP 112 (274)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCC
Confidence 68899999999999998865 456677776543 365554211 000 000112244556778899
Q ss_pred EEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEe
Q 000092 2004 VFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2004 ~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+|+.|- |-+.|| ..+++. .|+ ++|.++++++.
T Consensus 113 vIAav~--G~a~GgG~~lala----cD~--~ia~~~a~f~~ 145 (274)
T 3tlf_A 113 VLTAVN--GICCGAGMDWVTT----TDI--VIASEQATFFD 145 (274)
T ss_dssp EEEEEC--SEEEGGGHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEEEEC--CeeehHHHHHHHh----CCE--EEEcCCCEEEC
Confidence 999996 666664 444554 477 88889998876
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=81.46 E-value=7.8 Score=46.39 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhhh-hh---------c-hHHHHHHHHHHHhcCCCCEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRDL-FE---------G-ILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~e-~~---------g-ilk~ga~iv~al~~~~vP~i~ 2006 (2267)
...++++......++++.+.. ..+=+|+|.-.+ .|+.|..-. .. . .......++..+..+.+|+|+
T Consensus 49 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 128 (289)
T 3t89_A 49 RNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVA 128 (289)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEE
Confidence 368899999999999998865 567788887654 366554211 00 0 011234677888999999999
Q ss_pred EEccCCcCCchh-HhhhccccCCccceeecccccEEEe
Q 000092 2007 YIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2007 vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
.|- |-+.||+ .+++. .|+ ++|.+++++|.
T Consensus 129 aV~--G~a~GgG~~lala----cD~--ria~~~a~f~~ 158 (289)
T 3t89_A 129 MVA--GYSIGGGHVLHMM----CDL--TIAADNAIFGQ 158 (289)
T ss_dssp EEC--SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred EEC--CEeehHHHHHHHh----CCE--EEEeCCCEEec
Confidence 996 6666654 44444 477 89999999887
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=81.41 E-value=1.7 Score=46.71 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=71.9
Q ss_pred hHHHHHHhcCCCCCccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEE-E
Q 000092 34 EVDEFCRSLGGKKPIHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFV-E 107 (2267)
Q Consensus 34 ~~~~~~~~~~g~~~~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i~~v-~~~t~~D~~~~a~~vr~ADe~v-~ 107 (2267)
.++.+.+. -++|.|+|. |-.+.++++.+++.||+++..+..-+.+ .+-++.+...-. .-.|-.+ .
T Consensus 14 ~l~~ll~~------p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~---~~vDlvvi~ 84 (144)
T 2d59_A 14 DIREILTR------YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIP---DKIEVVDLF 84 (144)
T ss_dssp HHHHHHHH------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCS---SCCSEEEEC
T ss_pred HHHHHHcC------CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcC---CCCCEEEEE
Confidence 45555521 368999998 5788899999999999876433322211 112222211100 1234433 3
Q ss_pred ccCCCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 108 vp~~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
+|. ..+..+++.|.+.++.++|--.|.. ..++.+.+.++|+.++||.---+
T Consensus 85 vp~-------~~~~~vv~~~~~~gi~~i~~~~g~~--~~~l~~~a~~~Gi~vvGpnc~gv 135 (144)
T 2d59_A 85 VKP-------KLTMEYVEQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVANRCMMR 135 (144)
T ss_dssp SCH-------HHHHHHHHHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESCCHHH
T ss_pred eCH-------HHHHHHHHHHHHcCCCEEEECCCch--HHHHHHHHHHcCCEEEcCCchhh
Confidence 332 2356677777788999999766653 45678888889999999865433
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.40 E-value=0.91 Score=53.56 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=37.0
Q ss_pred cCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 710 DADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 710 ~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..=.....|++- -...|.++.+|+|..+ +++|+.|++||+|++|+..
T Consensus 9 ~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 9 ITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 333445566653 3567999999999999 9999999999999999643
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=81.26 E-value=9.6 Score=45.80 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchhhh-hh----------------chHHHHHHHHHHHhcCCC
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQRDL-FE----------------GILQAGSTIVENLRTYKQ 2002 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~~e-~~----------------gilk~ga~iv~al~~~~v 2002 (2267)
..+.++......++++.++. ..+-+|+|.-. +.|+.|..-. .. ........++..+..+.+
T Consensus 52 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 131 (298)
T 3qre_A 52 NAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRK 131 (298)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------CCTTGGGGSSS
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 68899999999999998876 45667777544 3366553211 00 001112234556778899
Q ss_pred CEEEEEccCCcCCc-hhHhhhccccCCccceeecccccEEEeeC
Q 000092 2003 PVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2003 P~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|+|+.|- |-+.| |..+++. .|+ ++|.++++++.-+
T Consensus 132 PvIAaV~--G~a~GgG~~Lala----cD~--ria~~~a~f~~pe 167 (298)
T 3qre_A 132 PVIAAIN--GPCVGIGLTQALM----CDV--RFAAAGAKFAAVF 167 (298)
T ss_dssp CEEEEEC--SCEETHHHHHHHH----SSE--EEEETTCEEECCC
T ss_pred CEEEEEC--CceeecchHHHhh----CCE--EEEcCCCEEECcc
Confidence 9999997 66666 4444555 477 8999999988743
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=81.09 E-value=1.8 Score=46.21 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=69.0
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEE-EEEeccCCCCCChhhhhccEEE-EccCCCCCCCccCHH
Q 000092 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLV-AMATPEDMRINAEHIRIADQFV-EVPGGTNNNNYANVQ 121 (2267)
Q Consensus 48 ~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i~~v-~~~t~~D~~~~a~~vr~ADe~v-~vp~~~~~~~Y~dvd 121 (2267)
-++|.|+|. |-.+.++++.+++.||+++..+..-+.+ .+-++.+... ...-+|-.+ .+|. ..+.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~e---l~~~vDlvii~vp~-------~~v~ 83 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRE---LPKDVDVIVFVVPP-------KVGL 83 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGG---SCTTCCEEEECSCH-------HHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHH---hCCCCCEEEEEeCH-------HHHH
Confidence 368999998 8899999999999999877444332222 1122222211 111245443 3331 2356
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHH
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam 167 (2267)
.+++-|.+.++.++|.-.+. +..++.+.+++.|+.++||.---+
T Consensus 84 ~v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc~g~ 127 (138)
T 1y81_A 84 QVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRCIMV 127 (138)
T ss_dssp HHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCCHHH
T ss_pred HHHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCcceE
Confidence 66666667889999976554 345678888889999999865433
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=81.05 E-value=30 Score=40.88 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh--hhh--------c----------hHHHHHHHHHHHh
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD--LFE--------G----------ILQAGSTIVENLR 1998 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~--e~~--------g----------ilk~ga~iv~al~ 1998 (2267)
...+.++......++++.+.+ ..+=+|+|.-.+ .|+.|..- +.. . ..+....++.++.
T Consensus 25 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (275)
T 1dci_A 25 RNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIE 104 (275)
T ss_dssp TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 368889999999999998866 467777776543 47766431 110 0 0122345677888
Q ss_pred cCCCCEEEEEccCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 1999 TYKQPVFVYIPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
.+.+|+|+.|- |.+.||+ .+++. .|+ ++|.++|+++.-+
T Consensus 105 ~~~kPvIAav~--G~a~GgG~~lala----cD~--ria~~~a~f~~pe 144 (275)
T 1dci_A 105 KCPKPVIAAIH--GGCIGGGVDLISA----CDI--RYCTQDAFFQVKE 144 (275)
T ss_dssp HSSSCEEEEEC--SEEETHHHHHHTT----SSE--EEEETTCEEECCG
T ss_pred hCCCCEEEEEC--CeeeHHHHHHHHh----CCE--EEEeCCCEEeCcc
Confidence 99999999996 6666654 44444 477 8888888887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2267 | ||||
| d1uyra2 | 404 | c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxyla | 1e-127 | |
| d1uyra1 | 333 | c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla | 1e-117 | |
| d1a9xa5 | 275 | d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta | 3e-39 | |
| d2j9ga3 | 216 | d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom | 5e-39 | |
| d1w96a3 | 267 | d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M | 1e-38 | |
| d1w96a2 | 170 | c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N s | 8e-37 | |
| d1ulza3 | 214 | d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom | 3e-34 | |
| d2r7ka2 | 238 | d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo | 1e-31 | |
| d1a9xa6 | 259 | d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta | 2e-30 | |
| d1ulza2 | 114 | c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term | 3e-26 | |
| d2j9ga2 | 114 | c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term | 1e-25 | |
| d1w96a1 | 116 | b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C | 2e-24 | |
| d2j9ga1 | 116 | b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-do | 5e-23 | |
| d1pixa3 | 299 | c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase | 2e-21 | |
| d2r85a2 | 235 | d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo | 3e-21 | |
| d1ulza1 | 123 | b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-do | 6e-19 | |
| d1kjqa3 | 206 | d.142.1.2 (A:113-318) Glycinamide ribonucleotide t | 3e-17 | |
| d1i7na2 | 206 | d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor | 3e-14 | |
| d2a7sa2 | 271 | c.14.1.4 (A:278-548) Propionyl-CoA carboxylase com | 5e-14 | |
| d1vrga2 | 264 | c.14.1.4 (A:252-515) Propionyl-CoA carboxylase com | 5e-14 | |
| d3etja3 | 198 | d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo | 2e-12 | |
| d1on3a2 | 264 | c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltra | 6e-11 | |
| d1uc8a2 | 192 | d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly | 6e-11 | |
| d1iowa2 | 210 | d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain | 1e-10 | |
| d1ehia2 | 228 | d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V | 1e-08 | |
| d1xnya2 | 263 | c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com | 5e-08 | |
| d1dcza_ | 77 | b.84.1.1 (A:) Biotin carboxyl carrier domain of tr | 2e-07 | |
| d2a7sa1 | 258 | c.14.1.4 (A:20-277) Propionyl-CoA carboxylase comp | 1e-06 | |
| d1laba_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 2e-06 | |
| d1k8ma_ | 87 | b.84.1.1 (A:) Lipoyl domain of the mitochondrial b | 2e-06 | |
| d1pmra_ | 80 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 2e-06 | |
| d1pixa2 | 287 | c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A | 2e-06 | |
| d1on3a1 | 253 | c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltrans | 2e-05 | |
| d1e4ea2 | 211 | d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V | 1e-04 | |
| d1ghja_ | 79 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 3e-04 | |
| d1gsoa3 | 224 | d.142.1.2 (A:104-327) Glycinamide ribonucleotide s | 3e-04 | |
| d1xnya1 | 258 | c.14.1.4 (A:10-267) Propionyl-CoA carboxylase comp | 4e-04 | |
| d1vkza3 | 220 | d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy | 4e-04 | |
| d1iyua_ | 79 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 5e-04 | |
| d1vrga1 | 251 | c.14.1.4 (A:1-251) Propionyl-CoA carboxylase compl | 9e-04 | |
| d1bdoa_ | 80 | b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox | 0.002 |
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 403 bits (1038), Expect = e-127
Identities = 184/413 (44%), Positives = 260/413 (62%), Gaps = 17/413 (4%)
Query: 1839 LPIISPLDPPDRPVEYLPEN--SCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWART 1896
+PI+ D DRPV++ P N + D R I G +G + G+FDK SF ETL GWA+
Sbjct: 4 VPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKG 62
Query: 1897 VVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAL 1956
VV GRARLGGIP+G++ VET+TV +IPADP +S E ++ + GQVW P+SA KTAQA+
Sbjct: 63 VVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAI 122
Query: 1957 MDF-NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELR 2015
DF N E+LP+ ILANWRGFSGGQRD+F +L+ GS IV+ L YKQP+ +YIP ELR
Sbjct: 123 NDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELR 182
Query: 2016 GGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMA 2075
GG+WVVVD IN+D +EMYAD A+ VLEP+GM+ IKFR ++LL+ M RLD K +L +
Sbjct: 183 GGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRS 242
Query: 2076 KLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVD 2135
+L + + + + +Q+ RE++LLP Y Q++ +FA+LHD S RM AKGVI + ++
Sbjct: 243 QLSNK--SLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELE 300
Query: 2136 WDKSRSFFCRRLRRRVAESSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWL 2195
W ++R FF RLRRR+ E L+K L+ G+ + I I+ W+ S
Sbjct: 301 WTEARRFFFWRLRRRLNEEYLIKRLSHQVGE-ASRLEKIARIRSWYPASVD-------HE 352
Query: 2196 DDETFFTW-KDDSRNYEKKVQELGVQKVLLQLTNIGNSTSDLQALPQGLATLL 2247
DD TW +++ + + K++ L ++ L SD GL+ ++
Sbjct: 353 DDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIR--SDHDNAIDGLSEVI 403
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 372 bits (955), Expect = e-117
Identities = 168/337 (49%), Positives = 214/337 (63%), Gaps = 10/337 (2%)
Query: 1502 VNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTE 1561
+ Y L KR A TTY YDFP F A W + +++ D E
Sbjct: 2 IATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDD-FFISNE 60
Query: 1562 LKFADDSGTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSF 1621
L ++ L VER PG N IGMVA+ + + TPE+P GR ++VAND+TFK GSF
Sbjct: 61 LIEDENG-----ELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSF 115
Query: 1622 GPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYV 1681
GP+ED FF VT+ A + +P IYLAANSGARIG+AEE+ F++ W D NPD+GF Y+
Sbjct: 116 GPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYL 175
Query: 1682 YLTPEDYARIGS----SVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYS 1737
YLT E + + + E + +GE R+V+ +I+G EDGLGVE L GSG IAGA S
Sbjct: 176 YLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATS 235
Query: 1738 RAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQ 1797
RAY + FT+T VT R+VGIGAYL RLG R IQ QPIILTG A+NK+LGREVY+S++Q
Sbjct: 236 RAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQ 295
Query: 1798 LGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1834
LGG +IM NGV HLT DDL G+ I++W+SYVP
Sbjct: 296 LGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAK 332
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 146 bits (369), Expect = 3e-39
Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 3/189 (1%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
+T EEA+A VG+P +I+ S+ GG G +N +E + + P + I +
Sbjct: 22 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 81
Query: 276 VASQSRHLEVQLLCDQYGNVAALHS--RDCSVQRRHQKIIEEGPITVAPLETVKKLEQAA 333
+ E++++ D+ N + S ++ I P + + + A+
Sbjct: 82 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 141
Query: 334 RRLAKCVNY-VGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392
+ + + G + V++ + + G +E+NPR+ + + + +
Sbjct: 142 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAV 201
Query: 393 GIPLWQIPE 401
G L ++
Sbjct: 202 GYTLDELMN 210
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 143 bits (361), Expect = 5e-39
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 26/229 (11%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK+ + + A VP +P S + DD+ ++ A + +GY
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSDG-----------PLGDDM---------DKNRAIAKRIGY 40
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQL 287
P +IKAS GGGG+G+R V D E+ + E +++ K RH+E+Q+
Sbjct: 41 PVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQV 100
Query: 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347
L D GN L RDCS+QRRHQK++EE P E + + + + + Y GA T
Sbjct: 101 LADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT 160
Query: 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
E+L+ E GE+YF+E+N R+QVEHPVTE I ++L Q+ + G PL
Sbjct: 161 FEFLF--ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPL 207
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 144 bits (363), Expect = 1e-38
Identities = 137/292 (46%), Positives = 186/292 (63%), Gaps = 30/292 (10%)
Query: 171 GDKIGSSLIAQAANVPTLPWSGSHVKIP---PESCLVTIPDDVYRQACVYTTEEAIASCQ 227
GDKI S+++AQ+A VP +PWSG+ V ++ LV++ DD+Y++ C + E+ + +
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 228 VVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQL 287
+G+P MIKAS GGGGKGIR+V +++ AL+ Q E+PGSPIFIMK+A ++RHLEVQL
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQL 120
Query: 288 LCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAAT 347
L DQYG +L RDCSVQRRHQKIIEE P+T+A ET ++E+AA RL K V YV A T
Sbjct: 121 LADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGT 180
Query: 348 VEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG 407
VEYLYS + G++YFLELNPRLQVEHP TE ++ +NLPAAQ+ + MGIP+ +I +IR YG
Sbjct: 181 VEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYG 240
Query: 408 MEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDG-FKPT 458
M + ++D +P
Sbjct: 241 MNP--------------------------HSASEIDFEFKTQDATKKQRRPI 266
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 135 bits (341), Expect = 8e-37
Identities = 87/150 (58%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 23 AVPIRSPAAMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAIL 82
+ S + +F +S GG I ILIANNG+AAVK IRS+R WAYETFG ++ +
Sbjct: 21 GLNTVDKLEESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQ 80
Query: 83 LVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHA 142
VAMATPED+ NAE+IR+ADQ++EVPGGTNNNNYANV LIV++AE VDAVW GWGHA
Sbjct: 81 FVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHA 140
Query: 143 SEIPELPDTL--STKGIIFLGPPATSMAAL 170
SE P LP+ L S + +IF+GPP +M +L
Sbjct: 141 SENPLLPEKLSQSKRKVIFIGPPGNAMRSL 170
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Score = 129 bits (326), Expect = 3e-34
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 26/228 (11%)
Query: 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232
K S + + A VP +P S + + EEA A + +GYP
Sbjct: 1 KARSKEVMKKAGVPVVPGS---------------------DGVLKSLEEAKALAREIGYP 39
Query: 233 AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLL 288
++KA+ GGGG+GIR N++E+ ++Q E + + K +H+E Q+L
Sbjct: 40 VLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVL 99
Query: 289 CDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATV 348
D++GNV L RDCS+QRR+QK++E P + E + + AK + Y A T+
Sbjct: 100 GDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTM 159
Query: 349 EYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
E++ + G YF+E+N R+QVEHPV+E + I++ Q+ + G PL
Sbjct: 160 EFIAD-QEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPL 206
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Score = 122 bits (307), Expect = 1e-31
Identities = 21/214 (9%), Positives = 58/214 (27%), Gaps = 31/214 (14%)
Query: 219 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGE-----VPGSPIFI 273
+ S + + ++K GG+G + +E + ++ + I
Sbjct: 16 VPKKYESPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHI 75
Query: 274 MKVASQSR------------HLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVA 321
+ + +E+ + +Y + R + + I IT
Sbjct: 76 EEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGN 135
Query: 322 P-----LETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQV 370
+ ++ + +L +G ++ L + E E++ R+
Sbjct: 136 IPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNEN-LELVVFEMSARVDG 194
Query: 371 EHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRR 404
+ + + EI+
Sbjct: 195 GTNSF--MNGGPYSFLYNGEPLSMGQRIAREIKM 226
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 120 bits (301), Expect = 2e-30
Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 17/218 (7%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
V E A+ + +GYP +++AS+ GG+ + V+++ ++R F+ +P+ +
Sbjct: 19 VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 78
Query: 276 VASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLE---QA 332
+ ++V +CD G + + +++ + A + + + Q
Sbjct: 79 FLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 136
Query: 333 ARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGM 392
++LA + G V++ + E Y +E+NPR P + L V
Sbjct: 137 VQKLAFELQVRGLMNVQFAV--KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMA 194
Query: 393 GIPLWQIPEIRRFYGMEHGGVYDAWRKTSVIATPFDFD 430
G + E + SV F+
Sbjct: 195 G---KSLAEQGVTKEVIPPYY-------SVKEVVLPFN 222
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 103 bits (257), Expect = 3e-26
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
++ +L+AN G AV+ IR+ + T +A ++ A H+++AD+
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPT-----------VAIYNEVESTARHVKLADEAYM 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ G + Y N Q I+ +A DA+ PG+G +E E GI F+GP +
Sbjct: 51 I-GTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVI 109
Query: 168 AALGD 172
+GD
Sbjct: 110 ELMGD 114
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 1e-25
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVE 107
+ I+IAN G A++ +R+ + +T +A + +H+ +AD+ V
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKT-----------VAVHSSADRDLKHVLLADETVC 50
Query: 108 VPGGTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSM 167
+ + +Y N+ I+ AE+T A+ PG+G SE + + G IF+GP A ++
Sbjct: 51 IGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETI 110
Query: 168 AALG 171
+G
Sbjct: 111 RLMG 114
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.5 bits (242), Expect = 2e-24
Identities = 69/116 (59%), Positives = 86/116 (74%)
Query: 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVF 497
KGHC A R+TSEDP+DGFKP+ G + EL+F+S NVW YFSV + G IH FSDSQFGH+F
Sbjct: 1 KGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIF 60
Query: 498 AFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553
AFGE+R + +MV+ LKE+ IRG+ RT V+Y I LL D+ +N I TGWLD I
Sbjct: 61 AFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 116
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Score = 93.9 bits (233), Expect = 5e-23
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVF 497
+GH V R+ +EDP+ F P+ GK+ V + +G + + DS G +
Sbjct: 1 RGHAVECRINAEDPNT-FLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLI 59
Query: 498 AFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAM 555
+GE+R +AIA M L+E+ I I+TNVD I +++ +++ + +L+ ++ +
Sbjct: 60 CYGENRDVAIARMKNALQELIID-GIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 116
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Score = 94.8 bits (235), Expect = 2e-21
Identities = 53/322 (16%), Positives = 99/322 (30%), Gaps = 56/322 (17%)
Query: 1830 YVPPHIGGALPIISPLDPPDRPVEYLPENS---CDPRAAICGFLDNNGKWIGGIFDKDSF 1886
Y P P +P P D +P N D I +FD
Sbjct: 1 YDPEFFRVDDPK-APAFPADDLYSMVPLNDKRAYDIYNVI-----------ARLFDNSEL 48
Query: 1887 VETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFP 1946
E +G+ +VTG A++ G+ VG+VA +M G +
Sbjct: 49 HEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAG-------SVGIGGKLYR 101
Query: 1947 DSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2006
K + + R+ LP+ + + G G +L G +++ +++T P F
Sbjct: 102 QGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFE 161
Query: 2007 YIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRL 2066
+V+ + N + + V+ E +
Sbjct: 162 ITLRKG-TAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYS----------- 209
Query: 2067 DQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAA 2126
+AK ++A + ++ + I+A + P A
Sbjct: 210 -----RRLAKDRKAGKDLQ-PTIDKMNNLIQAFYTKSRPKV----------------CAE 247
Query: 2127 KGVIKEVVDWDKSRSFFCRRLR 2148
G++ E+VD +K R +
Sbjct: 248 LGLVDEIVDMNKIRGYVEAFTE 269
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Score = 92.7 bits (229), Expect = 3e-21
Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 28/208 (13%)
Query: 221 EAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPI--------- 271
E + P ++K GGKG + ++ ++ G +
Sbjct: 18 EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYV 77
Query: 272 ----FIMKVASQSRHLEVQLLCDQYGN---VAALHSRDCSVQRRHQKIIEE----GPITV 320
E++L+ V A+ Q I V
Sbjct: 78 LGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIV 137
Query: 321 APLETVKKLEQAARRLAKCVN-----YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVT 375
+ + +A R+ K G +E ++ E+ E++ R+ +
Sbjct: 138 LRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVF-TPDLEFVVFEISARIVAGTNIF 196
Query: 376 EWIAEINLPAAQVAVGMGIPLWQIPEIR 403
+ + + EIR
Sbjct: 197 --VNGSPYTWLRYDRPVSTGRRIAMEIR 222
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Score = 82.4 bits (203), Expect = 6e-19
Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 439 GHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFA 498
G+ + R+ +EDP F P++ ++ + + G + + DS +
Sbjct: 3 GYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLIT 62
Query: 499 FGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLD 550
+ + A+ M L+ +I ++T + I+++ D++ K T +L+
Sbjct: 63 WAPTWDEAVERMRAALETYEIT-GVKTTIPLLINIMKEKDFKAGKFTTKYLE 113
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Score = 80.5 bits (197), Expect = 3e-17
Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 33/230 (14%)
Query: 178 LIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKA 237
L A+ +PT + + + +GYP ++K
Sbjct: 8 LAAEELQLPTSTY-----------------------RFADSESLFREAVADIGYPCIVKP 44
Query: 238 SWGGGGKGIRKVHNDDEVRALFKQVQ--GEVPGSPIFIMKVASQSRHLEVQLLCDQYGNV 295
GKG + + +++ +K Q G + + V + + + G
Sbjct: 45 VMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVH 104
Query: 296 AALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSME 355
+++ + ++ + G +
Sbjct: 105 FCAPVGHRQEDGDYRESWQPQQMSPLA-----LERAQEIARKVVLALGGYGLFGVELFVC 159
Query: 356 TGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRF 405
E F E++PR VT +++ A V +G+P+ IR++
Sbjct: 160 GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPV---GGIRQY 206
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.0 bits (175), Expect = 3e-14
Identities = 20/160 (12%), Positives = 44/160 (27%), Gaps = 13/160 (8%)
Query: 220 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 279
+ +P ++K G G KV N + + + V
Sbjct: 40 PNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQT--YATAEPFIDA 97
Query: 280 SRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKC 339
+ VQ + + Y S + + + + ++
Sbjct: 98 KYDIRVQKIGNNYKA---YMRTSISGNWKTNTGSAMLE----QIAMSDRYKLWVDACSEM 150
Query: 340 VNYVGAATVEYLYSMETGEYYFLELN---PRLQVEHPVTE 376
+ V+ ++ + G+ Y E+ L EH V +
Sbjct: 151 FGGLDICAVKAVHG-KDGKDYIFEVMDCSMPLIGEHQVED 189
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.5 bits (177), Expect = 5e-14
Identities = 58/323 (17%), Positives = 99/323 (30%), Gaps = 78/323 (24%)
Query: 1833 PHIGGALPIISPLDPPDRPVEYL----PENS---CDPRAAICGFLDNNGKWIGGIFDKDS 1885
P A P + L P++ D I LD D
Sbjct: 1 PRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLD------------DE 48
Query: 1886 FVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWF 1945
F+E G+A+ +V G R+ G PVGIVA +
Sbjct: 49 FLEIQAGYAQNIVVGFGRIDGRPVGIVANQPT---------------------HFAGCLD 87
Query: 1946 PDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVF 2005
+++ K A+ + + +P+ +L + GF G + GI++ G+ ++ P
Sbjct: 88 INASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKI 147
Query: 2006 VYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGR 2065
I G V+ + D A TA+ V+ G + +R
Sbjct: 148 TVI-TRKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASGAVGFVYRQ--------- 195
Query: 2066 LDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMA 2125
+L EA N L+ Q + + + P A
Sbjct: 196 ----------QLAEAAANGEDIDKLRLRLQQEYEDTLVNP----------------YVAA 229
Query: 2126 AKGVIKEVVDWDKSRSFFCRRLR 2148
+G + V+ +R + LR
Sbjct: 230 ERGYVDAVIPPSHTRGYIGTALR 252
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Score = 72.1 bits (176), Expect = 5e-14
Identities = 57/315 (18%), Positives = 100/315 (31%), Gaps = 80/315 (25%)
Query: 1840 PIISPLDPPDRPVEYL---PENS---CDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW 1893
P+ P + P + L P+N D R I + D F E +
Sbjct: 5 PVEDPDTSLETPEDILDILPDNPNKGYDVR-----------DVIKRVVDHGEFFEVQPYF 53
Query: 1894 ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTA 1953
A+ +V G AR+ G VGIVA + V DS+ K A
Sbjct: 54 AKNIVIGFARIQGKTVGIVANQPS---------------------VLAGVLDIDSSDKAA 92
Query: 1954 QALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAE 2013
+ + + +P+ + G+ G GI++ G+ ++ P I A
Sbjct: 93 RFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAY 152
Query: 2014 LRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDL 2073
G + + +D + + +A+ V+ PEG I F+ +
Sbjct: 153 -GGAYIAMGSKHLGADMVLAW--PSAEIAVMGPEGAANIIFKRE---------------- 193
Query: 2074 MAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEV 2133
+ + R + E QQ A++G + V
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANP-----------------------YIAASRGYVDMV 230
Query: 2134 VDWDKSRSFFCRRLR 2148
+D ++R + R L
Sbjct: 231 IDPRETRKYIMRALE 245
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 32/225 (14%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
D++ + ++PT PW + E A +G
Sbjct: 1 DRLTQKQLFDKLHLPTAPW-----------------------QLLAERSEWPAVFDRLGE 37
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ 291
A++K GG + +E L + GE + + + S + +
Sbjct: 38 LAIVKRRTGGYDGRGQWRLRANETEQLPAECYGEC-----IVEQGINFSGEVSLVGARGF 92
Query: 292 YGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYL 351
G+ Q + P A + + +A +
Sbjct: 93 DGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEMLSAIMQELGYVG----VMAME 148
Query: 352 YSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPL 396
+ EL PR+ T+ A I+ + +PL
Sbjct: 149 CFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPL 193
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Score = 63.2 bits (153), Expect = 6e-11
Identities = 48/300 (16%), Positives = 96/300 (32%), Gaps = 70/300 (23%)
Query: 1856 PENSCDPRAAICGFLDNNGKW-------IGGIFDKDSFVETLEGWARTVVTGRARLGGIP 1908
P N P + + +GK I I D ++E G+A +VT AR+ G
Sbjct: 9 PNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRS 68
Query: 1909 VGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFI 1968
VGIVA + + +++ K A+ + + +PL
Sbjct: 69 VGIVANQPSVMS---------------------GCLDINASDKAAEFVNFCDSFNIPLVQ 107
Query: 1969 LANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINS 2028
L + GF G + + GI++ G+ ++ P + + G + + + +
Sbjct: 108 LVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVV-LRKAYGGSYLAMCNRDLGA 166
Query: 2029 DHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAM 2088
D + + A+ V+ EG + + +
Sbjct: 167 DAVYAWPS--AEIAVMGAEGAANV------------------------IFRKEIKAADDP 200
Query: 2089 VESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2148
++I+ + +T AA+G + +V+D +R L
Sbjct: 201 DAMRAEKIEEYQNAF---------------NTPYVAAARGQVDDVIDPADTRRKIASALE 245
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Score = 61.5 bits (148), Expect = 6e-11
Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 38/225 (16%)
Query: 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232
K +S+ A +P P++ L T EEA+ + GYP
Sbjct: 1 KWATSVALAKAGLPQ-----------PKTALAT------------DREEALRLMEAFGYP 37
Query: 233 AMIKASWGGGGKGI--RKVHNDDEVRALFKQVQGEVPGSPIFIMK-VASQSRHLEVQLLC 289
++K G G+ + K+V G +I + V R + V ++
Sbjct: 38 VVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG 97
Query: 290 DQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVE 349
++ S E P+ + A G V+
Sbjct: 98 ERAIAAIYRRSAHWITNTARGGQAENCPL--------TEEVARLSVKAAEAVGGGVVAVD 149
Query: 350 YLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGI 394
S E+N ++ ++ + +++P + +
Sbjct: 150 LFES--ERGLLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWSL 190
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 60.9 bits (146), Expect = 1e-10
Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 23/198 (11%)
Query: 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYP 232
K+ S L+ Q A +P PW V + + + +++ +A +G P
Sbjct: 1 KLRSKLLWQGAGLPVAPW-------------VALTRAEFEKG---LSDKQLAEISALGLP 44
Query: 233 AMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQY 292
++K S G G+ KV ++ ++ + +++ V +L ++
Sbjct: 45 VIVKPSREGSSVGMSKVVAENALQDALRLAF---QHDEEVLIEKWLSGPEFTVAILGEEI 101
Query: 293 GNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK---KLEQAARRLAKCVNYVGAATVE 349
+ + + +E L+ + + G ++
Sbjct: 102 LPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 161
Query: 350 YLYSMETGEYYFLELNPR 367
+ G++Y LE N
Sbjct: 162 VMLD-SDGQFYLLEANTS 178
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 55.4 bits (132), Expect = 1e-08
Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 34/208 (16%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK + + + + + + PES +G
Sbjct: 1 DKALTKELLTVNGIRNTKY----IVVDPES---------------ANNWSWDKIVAELGN 41
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ 291
+KA+ G GI +V N +E I ++ LEV ++ +
Sbjct: 42 IVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGAR--ELEVGVIGND 99
Query: 292 YGNVAALHSRDCSVQRRHQKIIEEGPITVAPL------------ETVKKLEQAARRLAKC 339
V+ + + Q + V E K+++Q A K
Sbjct: 100 QPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKV 159
Query: 340 VNYVGAATVEYLYSMETGEYYFLELNPR 367
+N G A +++L E Y E N
Sbjct: 160 LNLRGEARMDFLLD-ENNVPYLGEPNTL 186
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Score = 54.4 bits (130), Expect = 5e-08
Identities = 45/272 (16%), Positives = 85/272 (31%), Gaps = 62/272 (22%)
Query: 1877 IGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERV 1936
I + D F ET +A ++TG R+ G PVGIVA +
Sbjct: 35 IEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPM------------------- 75
Query: 1937 VPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN 1996
Q ++ K A+ + + +P+ + GF G +GI++ G+ ++
Sbjct: 76 --QFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFA 133
Query: 1997 LRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRT 2056
P+ I G V+ + +D + TA+ V+ +G + I
Sbjct: 134 YAEATVPLITVI-TRKAFGGAYDVMGSKHLGADLNLAWP--TAQIAVMGAQGAVNILH-- 188
Query: 2057 KELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAE 2116
++ I T ++ ++ +
Sbjct: 189 ------------------------------------RRTIADAGDDAEATRARLIQEYED 212
Query: 2117 LHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2148
A +G + V+ +R R LR
Sbjct: 213 ALLNPYTAAERGYVDAVIMPSDTRRHIVRGLR 244
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Score = 48.3 bits (115), Expect = 2e-07
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAM 745
++ A + + LV +G + A +E MKM + +P G + + + E A+
Sbjct: 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAV 67
Query: 746 QAGELIARL 754
Q G+ + ++
Sbjct: 68 QGGQGLIKI 76
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.8 bits (118), Expect = 1e-06
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 1722 GVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP-IILTGF 1780
GV +L I A ++ + G G Y L I + +TG
Sbjct: 141 GVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGP 200
Query: 1781 SALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPH 1834
+ + G EV + +LGG MA +G H S + + + + LSY+PP+
Sbjct: 201 DVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPN 253
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 45.5 bits (108), Expect = 2e-06
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+++++ V G ++ D EV+ K + + SP G + + + EG G+ +
Sbjct: 14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLI 73
Query: 753 RLD 755
LD
Sbjct: 74 TLD 76
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (109), Expect = 2e-06
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+ + V +G + EV+ K + + S GV+ + G+ +
Sbjct: 17 REVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLV 76
Query: 753 RLDLDDPS 760
++ +
Sbjct: 77 DIETEALK 84
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Score = 45.1 bits (107), Expect = 2e-06
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+ + G + D E+E K+ + + + A G+L EG + + +++
Sbjct: 15 ADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILG 74
Query: 753 RLDLDD 758
RL +
Sbjct: 75 RLREGN 80
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Score = 49.6 bits (117), Expect = 2e-06
Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 47/233 (20%)
Query: 1601 FPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660
+G+ ++VA+D AG++ P + L +D A +PL+Y+ SG + E+V
Sbjct: 100 RVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKV 159
Query: 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDG 1720
G T +L +V
Sbjct: 160 YPNRRGGGT-------------------------PFFRNAELNQLGIPVIVG-------- 186
Query: 1721 LGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGF 1780
+ G+ G Y T + + + G+ + L
Sbjct: 187 -----IYGTNPAGGGYHS-ISPTVIIAHEKAN-----MAVGGAGIMGGMNPKGHVDLEYA 235
Query: 1781 SALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVP 1832
+ + ++ R + G I G + + + + I K++ +P
Sbjct: 236 NEIADMVDRTGKTE--PPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGMLP 286
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Score = 46.0 bits (108), Expect = 2e-05
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 1716 GKEDGLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI 1775
G G+++L+G G + A + + + G G +Y L I +
Sbjct: 135 GARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHM 194
Query: 1776 ILTGFSALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVP 1832
+TG + + G +V + +LGG + MA +G +H DD K LS++P
Sbjct: 195 FITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 250
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 28/204 (13%), Positives = 61/204 (29%), Gaps = 34/204 (16%)
Query: 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY 231
DK + ++A+ A + T + ++ Y
Sbjct: 1 DKSLTYIVAKNAGIATPAF-------------------------WVINKDDRPVAATFTY 35
Query: 232 PAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQ 291
P +K + G G++KV++ DE+ + + I + +
Sbjct: 36 PVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAAL 95
Query: 292 YGNVAALHSRDCSVQRRHQKIIEEGPITVA--------PLETVKKLEQAARRLAKCVNYV 343
+ R HQ++ E A E ++++ +++ K +
Sbjct: 96 VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCR 155
Query: 344 GAATVEYLYSMETGEYYFLELNPR 367
G A V+ + G E+N
Sbjct: 156 GLARVDMFLQ-DNGRIVLNEVNTL 178
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+ + G + D ++E K+ M +L+ A GV+ + EG + +GEL+
Sbjct: 14 ADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLG 73
Query: 753 RLD 755
+L
Sbjct: 74 KLT 76
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Score = 42.2 bits (98), Expect = 3e-04
Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 16/175 (9%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVP---GSPIF 272
E A+A + G P +IKA GKG+ +E A +
Sbjct: 22 FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRI 81
Query: 273 IMKVASQSRHLEVQLLCDQYGNV------AALHSRDCSVQRRHQKIIEEGPI-TVAPLET 325
+++ ++ D + D + P V
Sbjct: 82 VIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVH 141
Query: 326 VKKLEQAARRLAKCVNYVGAATVEYLYS----METGEYYFLELNPRLQVEHPVTE 376
+ +E+ K + G +LY+ + G +E N R T+
Sbjct: 142 QRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFG--DLETQ 194
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Score = 42.1 bits (98), Expect = 4e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 1722 GVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAY-LARLGMRCIQRLDQPIILTGF 1780
GV +L G I + A ++ V G G Y A + + +TG
Sbjct: 140 GVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP 199
Query: 1781 SALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPH 1834
+ + G +V +LGG + +T+GV H D+ + + + + LSY+P +
Sbjct: 200 DVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSN 252
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Score = 42.0 bits (97), Expect = 4e-04
Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 16/177 (9%)
Query: 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMK 275
T EE + P +IKA GKG+ + + +E ++ +
Sbjct: 22 AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPV 81
Query: 276 VASQSRHLEVQLLCDQYGNVAALHS-----------RDCSVQRRHQKIIEEGPITVAPLE 324
V + + D I ++
Sbjct: 82 VIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIK 141
Query: 325 TVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRL-----QVEHPVTE 376
+++L + Y + + G+ Y LE N RL +V +
Sbjct: 142 KIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNP 198
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Score = 38.7 bits (90), Expect = 5e-04
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVL-QFKMAEGQAMQAGELIA 752
+++ LV G I+ + +E K M + SP +GV+ + G ++ G+ I
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAII 70
Query: 753 RLDLDDPS 760
L+ +
Sbjct: 71 ELEPAAGA 78
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Score = 40.9 bits (95), Expect = 9e-04
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 2/114 (1%)
Query: 1722 GVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFS 1781
GV+ L G G I + A +T + G G Y L + +
Sbjct: 138 GVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGP 197
Query: 1782 ALNKLLGREVYSSHMQLGGPKI-MATNGVVHLTVSDDLEGISAILKWLSYVPPH 1834
+ K + E S LGG + +G H +D + +S + LSY+P +
Sbjct: 198 NVIKAVTGEEISQE-DLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLPSN 250
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (85), Expect = 0.002
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 691 VAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASG-VLQFKMAEGQAMQAGE 749
TP + + G ++ VE MKM + + SG V + GQ ++ E
Sbjct: 15 FYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE 74
Query: 750 LIARLD 755
+ ++
Sbjct: 75 PLVVIE 80
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2267 | |||
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 100.0 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 100.0 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 100.0 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 100.0 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 100.0 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 99.97 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.97 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.97 | |
| d1w96a2 | 170 | Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye | 99.97 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 99.97 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.96 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 99.95 | |
| d1w96a1 | 116 | Acetyl-CoA carboxylase, BC-C subdomain {Baker's ye | 99.95 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.95 | |
| d2j9ga1 | 116 | Biotin carboxylase (BC), C-domain {Escherichia col | 99.95 | |
| d1ulza1 | 123 | Biotin carboxylase (BC), C-domain {Aquifex aeolicu | 99.94 | |
| d2j9ga2 | 114 | Biotin carboxylase (BC), N-terminal domain {Escher | 99.93 | |
| d1ulza2 | 114 | Biotin carboxylase (BC), N-terminal domain {Aquife | 99.93 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.92 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.92 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.89 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.89 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.87 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.86 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.85 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.84 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.82 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.81 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.79 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 99.76 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.73 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 99.64 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 99.64 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.6 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.6 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 99.57 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.57 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.56 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.49 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.38 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.37 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.31 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 99.31 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.3 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.23 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.17 | |
| d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.12 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.1 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.08 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 99.07 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 98.85 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 98.83 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 98.83 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 98.62 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 98.4 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.29 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 97.99 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.91 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.44 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 97.29 | |
| d2pbza2 | 213 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 96.92 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 95.51 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 95.51 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 95.42 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 95.21 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 95.18 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 94.9 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 94.78 | |
| d1onla_ | 127 | Protein H of glycine cleavage system {Thermus ther | 94.63 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 94.47 | |
| d1hpca_ | 131 | Protein H of glycine cleavage system {Pea (Pisum s | 94.42 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 94.38 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 94.32 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 94.12 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.12 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 93.68 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 93.39 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 93.36 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 92.87 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 92.45 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 92.42 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 91.86 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 91.43 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 90.7 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 90.63 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 90.56 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 90.51 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 90.04 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 89.9 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 89.9 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 89.83 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 89.68 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 89.13 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 89.08 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 88.49 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 87.55 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 87.5 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 87.49 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 87.35 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 87.32 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 86.25 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 86.03 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 85.83 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 85.73 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 85.6 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 83.4 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 82.44 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 81.45 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 81.33 | |
| d1gpra_ | 158 | Glucose permease IIa domain, IIa-glc {Bacillus sub | 81.22 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 80.47 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 80.11 |
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-88 Score=810.73 Aligned_cols=398 Identities=45% Similarity=0.787 Sum_probs=346.1
Q ss_pred CCCCcCCCCCCCCCCCccCCC--CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEEEEEEE
Q 000092 1837 GALPIISPLDPPDRPVEYLPE--NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAV 1914 (2267)
Q Consensus 1837 ~~~p~~~~~d~~~r~~~~~P~--~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~ 1914 (2267)
.|.|+.++.||+||+++++|+ ++||+|++|+++.+.++ |++||||+|||+|++++||+++|||+|||||+|||||||
T Consensus 2 ~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~-~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn 80 (404)
T d1uyra2 2 MPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESG-FEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV 80 (404)
T ss_dssp SCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTE-EECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCcccccccCCCCCCCCCHHHHHhcCccccc-cccccccCCceeehhhccCCceEEEEEEECCEEEEEEEe
Confidence 356899999999999999999 69999999999888776 999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHH-HhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHH
Q 000092 1915 ETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALM-DFNREELPLFILANWRGFSGGQRDLFEGILQAGSTI 1993 (2267)
Q Consensus 1915 e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~-~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~i 1993 (2267)
|++++...+||||+|++|.++.++++||+|+|++|+|+||||+ +|++|+||||+|+||+||++|+++|+.|++++||++
T Consensus 81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i 160 (404)
T d1uyra2 81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160 (404)
T ss_dssp CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred CcccccCCccCCcccccchhhhhhccCCccCchHHHHHHHHHHHhhhccccceEEeecCCcccCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996 788999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHH
Q 000092 1994 VENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDL 2073 (2267)
Q Consensus 1994 v~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l 2073 (2267)
++++++++||+|+||+|.|+++||+|+++++++|++.|+|||||+|++|||+|||+|+|+||++++.++|+|+|+++++|
T Consensus 161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el 240 (404)
T d1uyra2 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL 240 (404)
T ss_dssp HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred HHHHHhcCCCEEEEEeCCcccchhhhhcccCccCCccceEEECCccccccCChhhhhhheecchhhhcchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHHHHHhH
Q 000092 2074 MAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRRVAE 2153 (2267)
Q Consensus 2074 ~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~l~e 2153 (2267)
++++.+. ..++++.+.++++|++|+++|+|+|+|+|.+|||||||++||+++|+||+||+|++||+||||||||||+|
T Consensus 241 ~~~l~~~--~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e 318 (404)
T d1uyra2 241 RSQLSNK--SLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNE 318 (404)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCc--ccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcHHHHHhcCccccccCHHHhHHHHHHHHHHHHhH
Confidence 9999887 55677788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhhcccccccCCCCccCchhhHHhhc-CchHHHHHHHHHhHHHHHHHHHHhccc
Q 000092 2154 SSLVKTLTAAAGDYLTHKSAIEMIKQWFLDSEIARGKEGAWLDDETFFTWKD-DSRNYEKKVQELGVQKVLLQLTNIGNS 2232 (2267)
Q Consensus 2154 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2232 (2267)
+.++++|.++++ .+++.+++.+|++||.++ ..|+||++|++|++ |.+.++++|++||.+++.++|.+++++
T Consensus 319 ~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~-------~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (404)
T d1uyra2 319 EYLIKRLSHQVG-EASRLEKIARIRSWYPAS-------VDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRS 390 (404)
T ss_dssp HHHHHTTTTCCS-SCCHHHHHHHHHTTSCTT-------SCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHHHhc-------cCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998 579999999999999753 35999999999998 889999999999999999999999999
Q ss_pred CCcccchHHHHHHHh
Q 000092 2233 TSDLQALPQGLATLL 2247 (2267)
Q Consensus 2233 ~~~~~~~~~~~~~~~ 2247 (2267)
+ ++.+++ |+.++|
T Consensus 391 ~-~~~~~~-~~~~~~ 403 (404)
T d1uyra2 391 D-HDNAID-GLSEVI 403 (404)
T ss_dssp T-HHHHHH-HHHTCC
T ss_pred C-cHHHHH-HHHHHh
Confidence 8 888887 887765
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-85 Score=781.05 Aligned_cols=327 Identities=52% Similarity=0.856 Sum_probs=315.3
Q ss_pred cccccccCcchhhHHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCccccccc
Q 000092 1501 EVNAQYQSLGVLDQKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVER 1580 (2267)
Q Consensus 1501 ~~~~py~~~~~~~~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r 1580 (2267)
|+++|||++|+||+||++||++|||||||||+||++|++++|++.... ...|.+++.+.||+||+ ++ .|.|++|
T Consensus 1 p~~~py~~~d~L~~KR~~A~~~gttY~yD~p~lf~~a~~~~w~~~~~~-~~~~~~~~~~~El~ld~-~~----~l~e~~r 74 (333)
T d1uyra1 1 PIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSAD-VKLTDDFFISNELIEDE-NG----ELTEVER 74 (333)
T ss_dssp CCSCSSCCHHHHSHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHCTT-CCCCGGGEEEEEEEECT-TS----CEEEECC
T ss_pred CCCCCCCCccHHHHHHHHHHHCCCeEecchHHHHHHHHHHHHHhcCCC-ccCccccceeccceecC-CC----ceeeccc
Confidence 789999999999999999999999999999999999999999988543 35567889999999998 77 7999999
Q ss_pred CCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhh
Q 000092 1581 SPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEV 1660 (2267)
Q Consensus 1581 ~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~ 1660 (2267)
.+|.|++|||+|.++++|||||+||+|+|+|||+||++||||+.+++||.+++++|+++|||+|||++||||||++++++
T Consensus 75 ~~G~n~~gmV~g~~~i~t~eyp~GR~vvvianD~T~~~GS~g~~e~~k~~~a~elA~~~~iP~I~l~~~sGARi~~~~~~ 154 (333)
T d1uyra1 75 EPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEI 154 (333)
T ss_dssp CTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCGGG
T ss_pred cCCCCCCCeEeEEEEEcCCcCCCCcEEEEEEECCceecCccCHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccChhhHHhhc-----cceeeeccccccCceeeEEEeecccccCccccccccccccccc
Q 000092 1661 KACFEIGWTDELNPDRGFNYVYLTPEDYARIG-----SSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGA 1735 (2267)
Q Consensus 1661 ~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~-----~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~ 1735 (2267)
+++|+|+|+|+.+|++||+|||+++++|+++. .+++++.+. ++||.||+|++|+|+++|+|||||++||.|||+
T Consensus 155 ~~~~~v~~~~~~~p~~G~~ylyl~~~~~~~~~~~~~~~~v~~~~~~-~~ge~~~~i~~i~G~~~g~GVe~L~g~g~ia~~ 233 (333)
T d1uyra1 155 VPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTV-INGEERFVIKTIIGSEDGLGVECLRGSGLIAGA 233 (333)
T ss_dssp TTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEE-ETTEEEEEEEEECCSSSCSSHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCcccCcceeecCHHHHHhhhhcccccceeeeeec-cCCceeeeeccccccccCCCcchhHHHHHHHHH
Confidence 99999999999999999999999999999983 457777666 899999999999999999999999999999999
Q ss_pred ccccccCceEEEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCccccccccCceEEEec
Q 000092 1736 YSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1736 ~s~a~~~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~nGv~d~~v~ 1815 (2267)
+|+||.+|||||+|||||+|||||+++||||+||+++++|+||||++||+++|++||+||+||||++||++||++|++|+
T Consensus 234 ~s~a~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltGp~~l~~~lG~eVy~s~~eLGG~~i~~~nGv~h~~a~ 313 (333)
T d1uyra1 234 TSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLTAV 313 (333)
T ss_dssp HHHHHHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSCHHHHHHHSSSCCCSCTHHHHSHHHHHHHTSSSEEES
T ss_pred HHHhcCCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeCHHHHHHhcCccccCChhHhCCHhHHhhCCCceEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCC
Q 000092 1816 DDLEGISAILKWLSYVPPH 1834 (2267)
Q Consensus 1816 dd~e~~~~i~~~LsylP~~ 1834 (2267)
||+||++.|++||||||++
T Consensus 314 dd~eai~~i~~~LSylP~~ 332 (333)
T d1uyra1 314 DDLAGVEKIVEWMSYVPAK 332 (333)
T ss_dssp SHHHHHHHHHHHHTTSCSS
T ss_pred CHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999975
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=100.00 E-value=2.1e-42 Score=403.77 Aligned_cols=238 Identities=22% Similarity=0.339 Sum_probs=200.0
Q ss_pred CCCcCCCCCCCC---CCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEEEE
Q 000092 1838 ALPIISPLDPPD---RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGI 1911 (2267)
Q Consensus 1838 ~~p~~~~~d~~~---r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgV 1911 (2267)
.+|..+|.|+.+ +..+++|. ++||+|++|++ |||++||+|++++||+++|||+|||+|+||||
T Consensus 3 ~~~~~~p~~~~~~~~~l~~iip~~~~~~yd~r~~i~~-----------~~D~~~f~E~~~~~g~~~vtg~ari~G~~vgv 71 (264)
T d1on3a2 3 EASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAK-----------IVDWGDYLEVKAGYATNLVTAFARVNGRSVGI 71 (264)
T ss_dssp CCCCCSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHH-----------HSGGGCEEEESTTSSTTEEEEEEEETTEEEEE
T ss_pred CCCCCCCCCCCCChHHHHhcCCCCCCCCCCHHHHHHH-----------hccCceeeeecCCCcCCEEEEEEEEecceEEE
Confidence 345555555543 34578898 89999999998 89999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHH
Q 000092 1912 VAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGS 1991 (2267)
Q Consensus 1912 iA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga 1991 (2267)
|||+..+. ||+|++++++|++|||++|++++||||+|+||+||++|.++|+.|++++||
T Consensus 72 ian~~~~~---------------------~G~~~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~g~i~~ga 130 (264)
T d1on3a2 72 VANQPSVM---------------------SGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGA 130 (264)
T ss_dssp EEECTTSG---------------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHH
T ss_pred Eeccchhc---------------------ccccChHHHHHHHHHHHHHHhcCCceEEEeccccccccHHHHHHHHHHHHH
Confidence 99975433 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEccCCcCCchhHhhhc-cccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHH
Q 000092 1992 TIVENLRTYKQPVFVYIPMMAELRGGAWVVVD-SRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKL 2070 (2267)
Q Consensus 1992 ~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~-~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~ 2070 (2267)
+++.++++++||+|++|+ ++++||++.+|+ +.+++|+ +||||+|++|||+|||+|.|.|+++.
T Consensus 131 ~~~~a~a~~~vP~itvi~--rkayG~g~~am~g~~~~~d~--~~aWP~A~~~vMg~Egaa~v~~~~el------------ 194 (264)
T d1on3a2 131 KMLYAYSEATVPKITVVL--RKAYGGSYLAMCNRDLGADA--VYAWPSAEIAVMGAEGAANVIFRKEI------------ 194 (264)
T ss_dssp HHHHHHHHCCSCEEEEEE--EEEEHHHHHTTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHH------------
T ss_pred HHHHHHHcCCCCEEEEEe--ccccCccccccccccCChhh--eeeHHhhHhhhccHHHHHHHHHhhhh------------
Confidence 999999999999999999 555776666666 5589999 99999999999999999999999762
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2071 IDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2071 ~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
++. .+++. ...++ ..+|.+...+|..+.+.|.||+||+|++||++|...|+--
T Consensus 195 -------~a~---~~~~~--~~~~~---------------~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~ 247 (264)
T d1on3a2 195 -------KAA---DDPDA--MRAEK---------------IEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMY 247 (264)
T ss_dssp -------HHS---SCHHH--HHHHH---------------HHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHG
T ss_pred -------hhh---hhhhh--hhHHH---------------HHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence 111 11111 11111 2234444567889999999999999999999999988754
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-42 Score=400.70 Aligned_cols=238 Identities=23% Similarity=0.369 Sum_probs=202.5
Q ss_pred CCCCcCCCCCCCCC---CCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEEE
Q 000092 1837 GALPIISPLDPPDR---PVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVG 1910 (2267)
Q Consensus 1837 ~~~p~~~~~d~~~r---~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVg 1910 (2267)
+.||+.++.||.++ ..+++|. ++||+|++|++ |+|+++|+|+++.||+++|||+|||+|+|||
T Consensus 2 e~pp~~~~~~p~~~~~~l~~~iP~~~~~~yd~r~~i~~-----------i~D~~~~~E~~~~~~~~~v~g~~r~~G~~vg 70 (264)
T d1vrga2 2 EEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVIKR-----------VVDHGEFFEVQPYFAKNIVIGFARIQGKTVG 70 (264)
T ss_dssp SCCCBCSCCCCCCCCGGGGGSSCSSTTSCCCTHHHHHH-----------HSGGGCCEEESTTSSTTEEEEEEEETTEEEE
T ss_pred CCCCCCCCCCcccChHHHhccCCCCCCCCCcHHHHHHH-----------hCcCceeeeecCCCCCCeEEEEEEecCceEE
Confidence 45666666565444 3467998 99999999998 7999999999999999999999999999999
Q ss_pred EEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHH
Q 000092 1911 IVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAG 1990 (2267)
Q Consensus 1911 ViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~g 1990 (2267)
||||++.. .||+|++++++|++|||++|+++++|||+|+||+||++|.++|+.|++++|
T Consensus 71 vian~~~~---------------------~~G~~~~~~a~Kaa~fi~lc~~~~iPli~l~DtpGf~~G~~~E~~g~~~~g 129 (264)
T d1vrga2 71 IVANQPSV---------------------LAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHG 129 (264)
T ss_dssp EEEECTTS---------------------GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHH
T ss_pred EEeccccc---------------------cccchhhhhHHHHHHHHHHHHHhCCceEEEeecccccccHHHHHHhHHHHH
Confidence 99997543 389999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHH
Q 000092 1991 STIVENLRTYKQPVFVYIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQK 2069 (2267)
Q Consensus 1991 a~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~ 2069 (2267)
|+++.++++++||+|++|+ |+++||+|.+|++ .+++|+ +||||+|++|||+||++++|+|+++.
T Consensus 130 a~~~~a~a~~~vP~i~vii--r~~yG~g~~am~~~~~~~d~--~~awP~a~~~vm~pe~aa~v~~~~~l----------- 194 (264)
T d1vrga2 130 AKLLYAYSEATVPKITVIL--RKAYGGAYIAMGSKHLGADM--VLAWPSAEIAVMGPEGAANIIFKREI----------- 194 (264)
T ss_dssp HHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHH-----------
T ss_pred HHHHHHHhcCCCCEEEEEe--CCcccHHhhhccCCccCCCe--eeeccceeEEecCHHHhhhhhhhhhh-----------
Confidence 9999999999999999999 6778988887775 489998 99999999999999999999998762
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHHH
Q 000092 2070 LIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRR 2149 (2267)
Q Consensus 2070 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r 2149 (2267)
+.. .++++ .+++ +..++.+...++.++.+.|.||+||+|++||++|+.+|+-
T Consensus 195 --------~~~---~~~~~---~~~~--------------~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~ 246 (264)
T d1vrga2 195 --------EAS---SNPEE---TRRK--------------LIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEV 246 (264)
T ss_dssp --------HHS---SCHHH---HHHH--------------HHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHH
T ss_pred --------hhh---hCcHH---HHHH--------------HHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHH
Confidence 111 11211 1111 1223344556789999999999999999999999998853
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=100.00 E-value=5.7e-42 Score=406.05 Aligned_cols=267 Identities=19% Similarity=0.237 Sum_probs=215.8
Q ss_pred cCCCCCCCCCCcCCCCCCCCCCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECC
Q 000092 1830 YVPPHIGGALPIISPLDPPDRPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGG 1906 (2267)
Q Consensus 1830 ylP~~~~~~~p~~~~~d~~~r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G 1906 (2267)
|+|+......|. +|.++.++..+++|. ++||+|++|+. |+|+|||+|+++.||+++|||+|||+|
T Consensus 1 y~p~~~~~~~p~-~p~~~~~~l~~iiP~~~~~~yd~r~iI~~-----------l~D~~~f~E~~~~~g~~~vtg~ari~G 68 (299)
T d1pixa3 1 YDPEFFRVDDPK-APAFPADDLYSMVPLNDKRAYDIYNVIAR-----------LFDNSELHEYKKGYGPEMVTGLAKVNG 68 (299)
T ss_dssp CCGGGGBSSCCC-CCSSCGGGHHHHSCSSTTSCCCHHHHHHT-----------TSGGGBCEESSTTSSTTEEEEEEEETT
T ss_pred CCCCCCCCCCCC-CCCCCHHHHHhhCCCCCCCCCCHHHHHHH-----------hccCCEeEEeccccCCceEEEEEEECC
Confidence 677766655554 556666777788998 89999999998 899999999999999999999999999
Q ss_pred eEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhch
Q 000092 1907 IPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI 1986 (2267)
Q Consensus 1907 ~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gi 1986 (2267)
+|||||||+++++.+....+.+++ .+.||+|++++++|++|||++|+++++|||+|+||+||++|.++|+.|+
T Consensus 69 ~~vgviAn~~~~~~~~~~~~a~~~-------~~~~G~l~~~~a~K~~rfi~lc~~~~iPlv~l~D~pGf~~g~~~E~~g~ 141 (299)
T d1pixa3 69 LLVGVVANVQGLLMNYPEYKAAGS-------VGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAEL 141 (299)
T ss_dssp EEEEEEEECCSEETTCCTTSCTTC-------CEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTH
T ss_pred eEEEEEeecCccccccccccccCC-------cCCCCccCHHHHHHHHHHHHHHHHcCCeEEEEEeCCCcccchHHHhhhH
Confidence 999999999887755444444433 4579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhc-cccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhc
Q 000092 1987 LQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVD-SRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGR 2065 (2267)
Q Consensus 1987 lk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~-~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r 2065 (2267)
+++||+++.++++++||+|++|+ |+++||++.+|+ +.++++++..++||++++|||+||++|.|.|+++..
T Consensus 142 ~r~ga~~~~a~~~~~VP~isvi~--r~~~G~a~~am~g~~~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~------ 213 (299)
T d1pixa3 142 LGLGQSLIYSIQTSHIPQFEITL--RKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRLA------ 213 (299)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEC--SEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhcceeEEEEe--cccccccccccccCccCcccceecCCCccccccccchhhheeehhhhhh------
Confidence 99999999999999999999999 566777766665 458888755779999999999999999999987611
Q ss_pred chHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHH
Q 000092 2066 LDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCR 2145 (2267)
Q Consensus 2066 ~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~ 2145 (2267)
+..+.++ +.+++++..+ ++..+|.+. .+|..+++.|.||+||+|++||++|+.
T Consensus 214 ----------~~~~~~~--~~~e~~e~~~--------------~~~~~~~~~-~sp~~aAs~~~iD~IIDP~dTR~~L~~ 266 (299)
T d1pixa3 214 ----------KDRKAGK--DLQPTIDKMN--------------NLIQAFYTK-SRPKVCAELGLVDEIVDMNKIRGYVEA 266 (299)
T ss_dssp ----------HHHHTTC--CCHHHHHHHH--------------HHHHHHHHT-TSHHHHHHHTSSSEECCTTTHHHHHHH
T ss_pred ----------hhhhhhh--hhhHHHHHHH--------------HHHHHHHHh-cCHHHHHHhCCcCeeECHHHHHHHHHH
Confidence 1111111 1122222111 122233322 367899999999999999999999999
Q ss_pred HHHHH
Q 000092 2146 RLRRR 2150 (2267)
Q Consensus 2146 ~L~r~ 2150 (2267)
+|+--
T Consensus 267 ~Le~~ 271 (299)
T d1pixa3 267 FTEAA 271 (299)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7.3e-42 Score=401.23 Aligned_cols=241 Identities=22% Similarity=0.356 Sum_probs=200.1
Q ss_pred CCCCcCCCCCCCC----CCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEE
Q 000092 1837 GALPIISPLDPPD----RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPV 1909 (2267)
Q Consensus 1837 ~~~p~~~~~d~~~----r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pV 1909 (2267)
++.|..+..|+.. ...+++|. ++||+|++|++ |+| +||+|++++||+++|||+|||+|+||
T Consensus 5 ~~~p~~~~~~~~~~~~~~l~~~ip~~~~~~yd~r~~i~~-----------i~D-~sf~E~~~~~g~~~itg~ari~G~~v 72 (271)
T d2a7sa2 5 AAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITR-----------LLD-DEFLEIQAGYAQNIVVGFGRIDGRPV 72 (271)
T ss_dssp CCCCCSCGGGSCCHHHHTTTTTSCSSSSCCCCTHHHHHH-----------HSS-SCCEEESTTSCTTEEEEEEESSSCEE
T ss_pred CCCCCCCCCCCCCcchhHHhhcCCCCCCCCCCHHHHHHH-----------HhC-CcchhhccccccceeEEEEEECCeEE
Confidence 4455544444443 34568897 89999999998 799 69999999999999999999999999
Q ss_pred EEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHH
Q 000092 1910 GIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQA 1989 (2267)
Q Consensus 1910 gViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ 1989 (2267)
|||||++.+. ||+|++++++|++|||++|+++++|||+|+||+||++|.++|..|++++
T Consensus 73 gvian~~~~~---------------------~G~~~~~~~~Ka~rfi~lc~~~~iPlv~l~dtpGf~~G~~~E~~g~~~~ 131 (271)
T d2a7sa2 73 GIVANQPTHF---------------------AGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRR 131 (271)
T ss_dssp EEEEECTTTG---------------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHHCHHHH
T ss_pred EEEecccccc---------------------CCCcCHHHHHHHHHHHHHHHHhCCceEEeechhhhhhhccHHHhhHHHH
Confidence 9999975533 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccc-cCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchH
Q 000092 1990 GSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSR-INSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQ 2068 (2267)
Q Consensus 1990 ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~-~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~ 2068 (2267)
||+++.++++++||+|++|+ ++++||+|.+|++. +++|+ +||||+|++|||+|||+|.|+|+++.....
T Consensus 132 ga~~~~a~a~~~vP~isvi~--~~~~G~~~~am~~~~~~~d~--~~AwP~A~igvMgpegaa~v~~~~~l~~~~------ 201 (271)
T d2a7sa2 132 GAKLLYAYGEATVPKITVIT--RKAYGGAYCVMGSKDMGCDV--NLAWPTAQIAVMGASGAVGFVYRQQLAEAA------ 201 (271)
T ss_dssp HHHHHHHHHHCCSCEEEEEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTTTTTTGGG------
T ss_pred HHHHHHHHHhCCCCeEEEEe--CCccchhhhhhcccccccce--EEEecceeEeecCHHHHHHHHHHHhhhhhh------
Confidence 99999999999999999999 66789888888754 88998 999999999999999999999997621110
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHH
Q 000092 2069 KLIDLMAKLQEAKNNRTLAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLR 2148 (2267)
Q Consensus 2069 ~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~ 2148 (2267)
..+ . +.++++ .+...+|.+...+|..+.++|.||+||+|++||++|+++|+
T Consensus 202 ----------~~~---~--~~~~~~--------------~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~ 252 (271)
T d2a7sa2 202 ----------ANG---E--DIDKLR--------------LRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALR 252 (271)
T ss_dssp ----------TSS---C--CTTSST--------------THHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred ----------hcc---c--chHHHH--------------HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence 000 0 000011 12223444555567899999999999999999999999995
Q ss_pred H
Q 000092 2149 R 2149 (2267)
Q Consensus 2149 r 2149 (2267)
-
T Consensus 253 ~ 253 (271)
T d2a7sa2 253 L 253 (271)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=3.9e-41 Score=392.83 Aligned_cols=227 Identities=22% Similarity=0.335 Sum_probs=194.0
Q ss_pred CCCccCCC---CCCChHHHhcccccCCCCcccccccCCCceeccccccceEEEEEEEECCeEEEEEEEeccccccccCCC
Q 000092 1850 RPVEYLPE---NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGWARTVVTGRARLGGIPVGIVAVETQTVMQVIPAD 1926 (2267)
Q Consensus 1850 r~~~~~P~---~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAd 1926 (2267)
+..+++|+ ++||+|++|++ |+|.+||+|+++.||+++|||+|||+|+||||||+++.+.
T Consensus 16 ~l~~iip~~~~~~yD~r~~i~~-----------~~D~~~f~E~~~~~g~~vitg~ari~G~~vgvia~~~~~~------- 77 (263)
T d1xnya2 16 ELDTIVPDSANQPYDMHSVIEH-----------VLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQF------- 77 (263)
T ss_dssp HGGGTSCSSSSSCCCHHHHHHH-----------HSGGGCCEEESTTSCTTEEEEEEEETTEEEEEEEECTTTG-------
T ss_pred HHHhcCCCCCCCCCCHHHHHHH-----------hCCCCEEEeeccccCCcEEeeeeeeccceEEEEeccccee-------
Confidence 45678888 89999999998 8999999999999999999999999999999999975433
Q ss_pred CCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEE
Q 000092 1927 PGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFV 2006 (2267)
Q Consensus 1927 pa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~ 2006 (2267)
||++++++++|++|||++|++++||||+|+|++||++|.++|+.|++++||+++.++++++||+|+
T Consensus 78 --------------~G~~~~~~a~Ka~~fi~lc~~~~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkit 143 (263)
T d1xnya2 78 --------------AGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLIT 143 (263)
T ss_dssp --------------GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred --------------cCCcchhhHHHHHHHHHHHHHhCCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCCchhHhhhcc-ccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCC
Q 000092 2007 YIPMMAELRGGAWVVVDS-RINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRT 2085 (2267)
Q Consensus 2007 vI~~~g~~~GGa~vv~~~-~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~ 2085 (2267)
+|+ ++++||+|.+|++ .+++|+ ++|||+|++|||+||+++.|.||++. +++... .
T Consensus 144 vi~--~~~~Gga~~~m~~~~~~~d~--~~awP~a~~gvm~pe~aa~il~~~~~-------------------~~a~~~-~ 199 (263)
T d1xnya2 144 VIT--RKAFGGAYDVMGSKHLGADL--NLAWPTAQIAVMGAQGAVNILHRRTI-------------------ADAGDD-A 199 (263)
T ss_dssp EEE--EEEEHHHHHHTTCGGGTCSE--EEECTTCEEESSCHHHHHHHHTHHHH-------------------HSCCTT-C
T ss_pred EEe--cCccccceeccCCcccCCcE--EEEcchhhhhccCHHHHHHHHHHHHH-------------------hhhccc-h
Confidence 999 5568888777664 589998 99999999999999999999998762 111000 0
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHHHHHHHHHH
Q 000092 2086 LAMVESLQQQIKAREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSFFCRRLRRR 2150 (2267)
Q Consensus 2086 ~~~~~~~~~~i~~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~~~~~L~r~ 2150 (2267)
.+.+ .++..++.+.+.+|.++++.|.||+||+|++||++|...|+.-
T Consensus 200 ~~~~------------------~~~~~~~~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l 246 (263)
T d1xnya2 200 EATR------------------ARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQL 246 (263)
T ss_dssp SSSH------------------HHHHHHHHHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHHH------------------HHHHHHHHHHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHH
Confidence 0001 1112233444556789999999999999999999999988863
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.8e-39 Score=378.41 Aligned_cols=268 Identities=17% Similarity=0.237 Sum_probs=228.2
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..+|++|+++|||+|+|.. ++|.+|+.++++++||||||||+.|+||+|+++|++
T Consensus 1 Dr~~~r~~~~~~gip~~~~~~-----------------------~~~~~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~ 57 (275)
T d1a9xa5 1 DRRRFDVAMKKIGLETARSGI-----------------------AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYN 57 (275)
T ss_dssp SHHHHHHHHHHTTCCCCSEEE-----------------------ESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESS
T ss_pred CHHHHHHHHHHCCCCCCCceE-----------------------eCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeeC
Confidence 899999999999999999765 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCE--EEecccccccccccceEEEecCCCCCCHHHHHHH
Q 000092 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNV--AALHSRDCSVQRRHQKIIEEGPITVAPLETVKKL 329 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~v--i~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~eL 329 (2267)
.+||.++++++.....+++++||+|+++++|++|++++|++|+. +++.+++|+.+++++|.++.+|++.++++.+++|
T Consensus 58 ~~el~~~~~~a~~~~~~~~v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~aP~~~L~~~~~~~i 137 (275)
T d1a9xa5 58 REEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIM 137 (275)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcEEEeeecCCchhheeeeEEecCCCEEEEEeeccccccCcccCceeEEcCCCcCCHHHHHHH
Confidence 99999999999988888999999999999999999999999984 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCce-eeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccc
Q 000092 330 EQAARRLAKCVNYV-GAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGM 408 (2267)
Q Consensus 330 ~~~A~rla~aLGy~-Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~ 408 (2267)
.+.|.++++++||. |.+++||+++++++++||+|+|||+|++|++++++||+||+++|+++++|.+++.+..
T Consensus 138 ~~~a~~i~~~lg~~~G~~~~ef~~~~~~~~~~~iE~npR~~~~~~~~~~~tgidlv~~~~~~a~G~~l~~~~~------- 210 (275)
T d1a9xa5 138 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN------- 210 (275)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC-------
T ss_pred HHHHHHHHHHcCceECceEEEEEEeCCCCEEEEEEecCCCCceehhhhHhhCCCHHHHHHHHHcCCCCccccc-------
Confidence 99999999999995 9999999999888999999999999999999999999999999999999999864210
Q ss_pred cCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccc----cccccCCCcEEEEEeeeeCCc
Q 000092 409 EHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQ----ELSFKSKPNVWAYFSVKSGGG 484 (2267)
Q Consensus 409 ~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~----~l~~~s~~~V~~~~~v~~G~~ 484 (2267)
+. .. +.....|.|..+.+. .+.|... ...+..
T Consensus 211 -~~--------------~~---------------------~~~~~~~~~~~~~~~~k~~~~~~~~~--------~~~~~~ 246 (275)
T d1a9xa5 211 -DI--------------TG---------------------GRTPASFEPSIDYVVTKIPRFNFEKF--------AGANDR 246 (275)
T ss_dssp -TT--------------TT---------------------TCSBSCSCCBCSSEEEEEEECCGGGC--------TTSCCB
T ss_pred -cc--------------cc---------------------ccCccccCCCCCcEecCccceecCCC--------CCCCCE
Confidence 00 00 000011112222111 0111111 123456
Q ss_pred ccccCCcccEEEEEEeCCHHHHHHHHHHhh
Q 000092 485 IHEFSDSQFGHVFAFGESRALAIANMVLGL 514 (2267)
Q Consensus 485 i~~~~Ds~~g~via~G~~reeA~~~l~~AL 514 (2267)
+.+.++| +|+||++|+||+||+.++.+||
T Consensus 247 l~~~~~s-~g~vi~~G~t~~eA~~ka~raL 275 (275)
T d1a9xa5 247 LTTQMKS-VGEVMAIGRTQQESLQKALRGL 275 (275)
T ss_dssp CCSSCCC-CEEEEEEESSHHHHHHHHHHHS
T ss_pred eCCCccc-CEEEEEEECCHHHHHHHHHHhC
Confidence 6677888 9999999999999999999987
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.4e-38 Score=368.50 Aligned_cols=263 Identities=52% Similarity=0.921 Sum_probs=237.5
Q ss_pred cCHHHHHHHHHHcCCCCCCCCCCCccC---CCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeE
Q 000092 171 GDKIGSSLIAQAANVPTLPWSGSHVKI---PPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIR 247 (2267)
Q Consensus 171 gDK~~~k~laq~aGVPtpp~~~~~~~~---~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr 247 (2267)
|||+.+|++|+++|||+.|+++++++. ........++.++|..+.+.|.+|+.++++++||||||||+.|+||+||+
T Consensus 1 gdK~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~igfPvvVKP~~~~gs~Gv~ 80 (267)
T d1w96a3 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIR 80 (267)
T ss_dssp CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEE
T ss_pred CCHHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhcCCCEEEEeecccCCeeEE
Confidence 799999999999999999999877662 11233446777889999999999999999999999999999999999999
Q ss_pred EECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHH
Q 000092 248 KVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~ 327 (2267)
+|++.+|+.++++.+...+.+++++||||++|.+|+++++++|++|..+.+.++.|..++++.......|++.++....+
T Consensus 81 iv~~~~el~~a~~~a~~~s~~~~vlVEe~I~G~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (267)
T d1w96a3 81 QVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFH 160 (267)
T ss_dssp EECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHHHHH
T ss_pred eecccchhhhhhhhhhhhcccchhhhhhhccchhhhhhhheeccCcceeeecccccccccccccccceeecccCchHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999888888888889999999
Q ss_pred HHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhccc
Q 000092 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYG 407 (2267)
Q Consensus 328 eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg 407 (2267)
++.+.+.++++++|+.|.+++||++++++|++||||+|||+|++||+++++||+|++++++++|+|.||..++|++..||
T Consensus 161 ~~~~~a~~~~~~lg~~g~~~vd~~~~~~~g~~yviEiNpR~~~~~~~~~~atGvdl~~~~i~~a~G~pl~~~~~~~~~~~ 240 (267)
T d1w96a3 161 EMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYG 240 (267)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccceeeeeeCCCCcEEEEEeccccccceeEEeeeeCCCHHHHHHHHHCCCChhhcchhhhhcC
Confidence 99999999999999999999999999778999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCcccccccccccccCCCccccCCCCCceEEEEEEEccCCC-CCCCCCCC
Q 000092 408 MEHGGVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDP-DDGFKPTS 459 (2267)
Q Consensus 408 ~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp-~~~F~Ps~ 459 (2267)
..|.+ ++.|++|+++||+ .+.|.|.+
T Consensus 241 ~~~~~--------------------------~~~i~~~~~~~~~~~~~~~p~~ 267 (267)
T d1w96a3 241 MNPHS--------------------------ASEIDFEFKTQDATKKQRRPIP 267 (267)
T ss_dssp CCTTC--------------------------CCCCCTTCCSHHHHHHCCCCCC
T ss_pred CCCCC--------------------------ccCeEeeeeCCCCCCCCCCCCC
Confidence 76653 4556667888874 45577753
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-35 Score=342.36 Aligned_cols=255 Identities=20% Similarity=0.267 Sum_probs=202.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHH
Q 000092 175 GSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDE 254 (2267)
Q Consensus 175 ~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eE 254 (2267)
+++++++++|||+|+|.. ++|.+|+.++++++||||||||+.|+||+|+++|+|.+|
T Consensus 1 rF~~~l~~lgi~~p~~~~-----------------------v~s~~ea~~~a~~iGfPvivKps~~~gG~G~~iv~~~~e 57 (259)
T d1a9xa6 1 RFQHAVERLKLKQPANAT-----------------------VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEAD 57 (259)
T ss_dssp HHHHHHHHHTCCCCCEEE-----------------------CCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHH
T ss_pred ChHHHHHHCCCCCCCceE-----------------------ECCHHHHHHHHHHhCCCEEEEECCCCCCCccEeecCHHH
Confidence 478999999999999876 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEE---ecCCCCCCHHHHHHHHH
Q 000092 255 VRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIE---EGPITVAPLETVKKLEQ 331 (2267)
Q Consensus 255 L~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiie---eaPa~~l~~e~~~eL~~ 331 (2267)
|..+++++...+++.++++|+|+++++|++||+++|+++ +.+.+..|.+++++++..+ ..|+..++++..++|++
T Consensus 58 l~~~~~~a~~~~~~~~vlie~~i~~~~Eiev~~i~Dg~~--~~i~~i~e~i~~~gvhsgds~~~~p~~~l~~~~~~~l~~ 135 (259)
T d1a9xa6 58 LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEM--VLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQ 135 (259)
T ss_dssp HHHHHHHCC--------EEEBCCTTCEEEEEEEEECSSC--EEEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHH
T ss_pred HHHHhhhhhcccccchhhhhhhcCCCeEEEEEEEEeCCc--EEEEeeeeccccCcceeEeccccccCccCCHHHHHHHHH
Confidence 999999998888888999999999999999999999643 3455677888888766543 34878899999999999
Q ss_pred HHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCCchhhhhcccccCC
Q 000092 332 AARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGMEHG 411 (2267)
Q Consensus 332 ~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ipdir~~yg~~~~ 411 (2267)
.|.++++++||.|+++|||+++ ++++||||+|||+|++||+++++||+||+++|+++++|.++..+ .
T Consensus 136 ~a~kia~~l~~~G~~~vef~v~--~~~~y~iEvNpR~~~~~~~~~k~tg~~lv~~~~~i~~G~~l~~~---~-------- 202 (259)
T d1a9xa6 136 QVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ---G-------- 202 (259)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEC--SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHHHH---T--------
T ss_pred HHHHHHHHhhhccceeEEEEEE--CCEEEEEEcccccCCceeeeeHhhCCCHHHHHHHHhcCCCcccc---c--------
Confidence 9999999999999999999997 78999999999999999999999999999999999999987632 0
Q ss_pred CcccccccccccccCCCccccCCCCCceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCc
Q 000092 412 GVYDAWRKTSVIATPFDFDQAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDS 491 (2267)
Q Consensus 412 ~~~~~~~~~~~~~i~f~~~~~~~~~~~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds 491 (2267)
....+.+.++++.+.+++.++..++.|..|+- .+ |
T Consensus 203 -------------------~~~~~~~~~~~vk~~v~~f~k~~~~d~~lg~e----mk----------------------s 237 (259)
T d1a9xa6 203 -------------------VTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPE----MR----------------------S 237 (259)
T ss_dssp -------------------CCSCCCCSSEEEEEEECGGGGCTTSCCCCCSS----CC----------------------C
T ss_pred -------------------cccccCCCcEEEEEEcCCccccCCCCCCCCCC----ee----------------------e
Confidence 01123346888988888766544444433320 11 1
Q ss_pred ccEEEEEEeCCHHHHHHHHHHh
Q 000092 492 QFGHVFAFGESRALAIANMVLG 513 (2267)
Q Consensus 492 ~~g~via~G~~reeA~~~l~~A 513 (2267)
.|.+++.|.|++||..++.++
T Consensus 238 -tGevm~~g~~~~eA~~Ka~~~ 258 (259)
T d1a9xa6 238 -TGEVMGVGRTFAEAFAKAQLG 258 (259)
T ss_dssp -CEEEEEEESSHHHHHHHHHHH
T ss_pred -eeeEEEEcCCHHHHHHHHHhc
Confidence 478999999999999988765
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-33 Score=318.97 Aligned_cols=204 Identities=37% Similarity=0.630 Sum_probs=192.6
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||+.+|++|+++||||+||+.. ..+++.+++.++++++||||||||+.|+||+|+++|++
T Consensus 1 dK~~~~~~~~~~GvP~vp~~~~--------------------~~~~s~dea~~~a~~iG~PvivKp~~~~ggrGv~~v~~ 60 (216)
T d2j9ga3 1 DKVSAIAAMKKAGVPCVPGSDG--------------------PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60 (216)
T ss_dssp SHHHHHHHHHHHTCCBCCBCSS--------------------CCCSCHHHHHHHHHHHCSSEEEEEEEEETTEEEEEECS
T ss_pred CHHHHHHHHHHcCcCCCCCCCC--------------------CCCCCHHHHHHHHHHcCCCEEEecccccCCceeEeecc
Confidence 8999999999999999998741 12689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC----CCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHH
Q 000092 252 DDEVRALFKQVQGEV----PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVK 327 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~----~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~ 327 (2267)
.+|+.++|+.+..++ .+.++++|+|++|.+|++++++.|+.|+++.+..++|+.+++|++.++.+|++..+++..+
T Consensus 61 ~~el~~a~~~~~~ea~~~~~~~~vlvE~~i~g~~~~~~~i~~dg~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 140 (216)
T d2j9ga3 61 DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRR 140 (216)
T ss_dssp HHHHHHHHHHHHHHTC--CCCCCEEEEECCSSCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCCCceEeeeeecCcccceeEEEEcCCCCeeeccccccCcccccCCeEEeccCccccchhhh
Confidence 999999999876553 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 328 KLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 328 eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
.|.+++.++++.+|+.|++|+||+++ ++++||||+|||+++++++++++||+|++++++++|+|.||+
T Consensus 141 ~~~~~~~~~~~~~~~~G~~~~e~~~~--~~~~~viEvnpR~~~~~~~~~~~tGvdlv~~~i~~alG~~l~ 208 (216)
T d2j9ga3 141 YIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLS 208 (216)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEE--TTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC
T ss_pred hhHHHHHHHHHHcCccCcceeEeEec--CCeEEEEeecCccccchhhhhHHHCcCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999 889999999999999999999999999999999999999987
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=2.9e-30 Score=293.73 Aligned_cols=203 Identities=36% Similarity=0.601 Sum_probs=186.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~ 252 (2267)
|..||++++++|||++||+. ..++|.+|+.++++++|||||+||..|+||+|+++|++.
T Consensus 1 K~~~k~~~~~aGvP~~p~~~---------------------~~v~s~~ea~~~~~~ig~P~vvKP~~~~~s~gv~~v~~~ 59 (214)
T d1ulza3 1 KARSKEVMKKAGVPVVPGSD---------------------GVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNE 59 (214)
T ss_dssp HHHHHHHHHHTTCCBCCBCS---------------------SSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSH
T ss_pred CHHHHHHHHHcCCCcCCCcC---------------------CCCCCHHHHHHHHHHcCCCEEEeeccccCCccceeeecc
Confidence 88999999999999988753 127899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----CCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHH
Q 000092 253 DEVRALFKQVQGE----VPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKK 328 (2267)
Q Consensus 253 eEL~~a~~~~~~e----~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~e 328 (2267)
+|+..+++....+ ....+++||+|++|.++..+.++.|++|++..+..++|+.++++......++....+++...+
T Consensus 60 ~el~~a~~~~~~~~~~~~~~~~viiEe~i~G~e~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 139 (214)
T d1ulza3 60 EELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREY 139 (214)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeheeecCcceeeEEEEEcCCCeEEEEeccccccCccccceeEEeecccccHHHHHH
Confidence 9999988765443 346789999999998888888999999999999999999999988888888888889999999
Q ss_pred HHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 329 LEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 329 L~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+.+.+.++++++||.|.+++||++++ +|++||||+|||+++++++++.++|+|++++++++++|.||+
T Consensus 140 ~~~~~~~~~~~lg~~G~~~vef~~~~-dg~~~~iEin~R~~~~~~~~~~a~Gidl~~~~v~~alG~~l~ 207 (214)
T d1ulza3 140 YGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLT 207 (214)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCccceEEEEEECC-CCCEEEEEecCcCCCchhhhHHHHCcCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999985 788999999999999999999999999999999999999987
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=1.4e-31 Score=311.64 Aligned_cols=178 Identities=26% Similarity=0.374 Sum_probs=158.0
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
.|+|++.+++ +||+|+|+++||||++||+|+.+++|+.++.++|.++++|+|+|.+|||+||+ |++.+++++
T Consensus 77 d~vV~G~G~I------~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~dsgGar~~--eg~~~~~~~ 148 (258)
T d2a7sa1 77 DGVVTGYGTI------DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQ--EGVVSLGLY 148 (258)
T ss_dssp TTEEEEEEES------SSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GCTHHHHHH
T ss_pred ccceeEEEEe------ccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcCCceEEEeccCCcccc--cccccccch
Confidence 5789999866 99999999999999999999999999999999999999999999999999999 888877544
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
. .++. . +...|| .||+|
T Consensus 149 ~------------~~~~---~-------------------------------------~~~~~~-----------~vP~I 165 (258)
T d2a7sa1 149 S------------RIFR---N-------------------------------------NILASG-----------VIPQI 165 (258)
T ss_dssp H------------HHHH---H-------------------------------------HHHHTT-----------TSCEE
T ss_pred h------------hHHH---H-------------------------------------HHHHcC-----------CCCEE
Confidence 3 1110 0 011122 26999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
++++|||+||+||.+.++|++||+++ +.|+++||++|+.++|+++ ++++|||+++|. +||++|++++||.++++.+
T Consensus 166 ~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aGP~vV~~~~ge~~--~~eeLGga~~h~~~sG~~D~v~~de~~a~~~~ 243 (258)
T d2a7sa1 166 SLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEV--TMEELGGAHTHMAKSGTAHYAASGEQDAFDYV 243 (258)
T ss_dssp EEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHHH
T ss_pred EEEecCcccHHHHHHHhccceEeecCceEEEccChhHHHHhcCCcc--ChhhccCHhHhhhhccccceEeCCHHHHHHHH
Confidence 99999999999999999999999765 7899999999999999999 999999999997 7999999999999999999
Q ss_pred HHHHhcCCCCCCC
Q 000092 1825 LKWLSYVPPHIGG 1837 (2267)
Q Consensus 1825 ~~~LsylP~~~~~ 1837 (2267)
+++|||||+|+.+
T Consensus 244 r~~Ls~lP~nn~~ 256 (258)
T d2a7sa1 244 RELLSYLPPNNST 256 (258)
T ss_dssp HHHHHHSCSSTTS
T ss_pred HHHHHhCCCCCcc
Confidence 9999999998865
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.97 E-value=2.8e-31 Score=310.01 Aligned_cols=181 Identities=24% Similarity=0.382 Sum_probs=160.0
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
.|+|++.+++ +||+|+|+++||||++||+|+.+++|+.++.++|.++++|+|+|.+|||+||+ |++.++.++
T Consensus 76 d~vv~G~G~I------~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~dsgGarm~--e~~~~~~~~ 147 (258)
T d1xnya1 76 DGVVTGYGTV------DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQ--EGVASLGAY 147 (258)
T ss_dssp TTEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGG--GTHHHHHHH
T ss_pred CeeEEEEEEE------CCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcCCceEEEecCCCcccC--cccccccch
Confidence 5789999876 99999999999999999999999999999999999999999999999999999 777766443
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
. .++ .. +...||. ||+|
T Consensus 148 ~------------~~~------~~----------------------------------~~~~s~~-----------vP~I 164 (258)
T d1xnya1 148 G------------EIF------RR----------------------------------NTHASGV-----------IPQI 164 (258)
T ss_dssp H------------HHH------HH----------------------------------HHHTTTT-----------SCEE
T ss_pred h------------HHH------HH----------------------------------HHHHcCC-----------CCEE
Confidence 3 011 00 0111222 6999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
++++|+|+||+||++.++|++||+++ +.|+|+||++|+.++|+++ +.++|||+++|. +||++|.+++||.++++.+
T Consensus 165 ~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP~vv~~~~ge~i--~~eelgga~~h~~~sG~~d~v~~de~ea~~~~ 242 (258)
T d1xnya1 165 SLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV--GFEELGGARTHNSTSGVAHHMAGDEKDAVEYV 242 (258)
T ss_dssp EEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSSCCSEEESSHHHHHHHH
T ss_pred EEEcCCcChhHHHHHHhccchhhcccceEEEecCHHHHHHHhcCcc--ChHHhccHHHHHhcCCeeEEEeCCHHHHHHHH
Confidence 99999999999999999999999874 7899999999999999999 889999999996 7999999999999999999
Q ss_pred HHHHhcCCCCCCCCCC
Q 000092 1825 LKWLSYVPPHIGGALP 1840 (2267)
Q Consensus 1825 ~~~LsylP~~~~~~~p 1840 (2267)
+++|||||+|+++.||
T Consensus 243 r~~Ls~lP~~~~e~pP 258 (258)
T d1xnya1 243 KQLLSYLPSNNLSEPP 258 (258)
T ss_dssp HHHHHHSCSSTTSCCC
T ss_pred HHHHHhcccccccCCC
Confidence 9999999999998776
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7e-31 Score=281.59 Aligned_cols=140 Identities=62% Similarity=1.040 Sum_probs=135.5
Q ss_pred chhhHHHHHHhcCCCCCccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccC
Q 000092 31 AMSEVDEFCRSLGGKKPIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPG 110 (2267)
Q Consensus 31 ~~~~~~~~~~~~~g~~~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~ 110 (2267)
.++++++|++.+||.+|||||||||||++|+|++|+||+||++|++.+..+++|+|++++|.++++.|+++||+.+++|+
T Consensus 29 ~~~~~~~~~~~~~~~~~ikkvLIANRGEIA~Ri~rt~relgi~t~~~~~~~~~v~Va~~~d~D~~s~~v~~aD~~v~l~g 108 (170)
T d1w96a2 29 EESPLRDFVKSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPG 108 (170)
T ss_dssp CCCHHHHHHHHTTCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCC
T ss_pred CcccHHHHHHHcCCCcccceeeeecCcHHHHHHHHHHHHhcchhcccccccceeEEEecCccccccchhhhhhhhhccCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHc--CCeEeCCCHHHHHHh
Q 000092 111 GTNNNNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTK--GIIFLGPPATSMAAL 170 (2267)
Q Consensus 111 ~~~~~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~--GI~fiGPs~eam~~l 170 (2267)
+++.++|+|++.|+++|+++++|||||||||+|||+.|+++|++. ||.|+||++++|+.|
T Consensus 109 ~~~~~sYLn~~~II~~A~~~~~DAIHPGYGFLSEn~~FA~~~~~a~~giiFIGPs~~~i~~m 170 (170)
T d1w96a2 109 GTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSL 170 (170)
T ss_dssp SSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHS
T ss_pred CCccchhhhHHHHHHHHHhcCCCEEEechhhhhhCHHHHHHHHHhcCCCEEECcCHHHHHhC
Confidence 998999999999999999999999999999999999999999976 999999999999864
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=99.97 E-value=1.1e-30 Score=303.35 Aligned_cols=177 Identities=23% Similarity=0.345 Sum_probs=158.3
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|+|++.+++ +||+|+|+++||||++||+|..+.+|+.++.++|.++++|+|+|.+|||+||+ |++.++.+
T Consensus 76 ~dgvV~G~G~I------~gr~v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sgG~r~~--eg~~~l~~ 147 (253)
T d1on3a1 76 ADGVVTGRGTI------LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQ--EGIDSLSG 147 (253)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred CCcEEEEEEEE------eceechhhhchhhhhcccceecccchhhhhHHHHhhcCCCeEEEEecCCCccc--ccceeccc
Confidence 46799999866 99999999999999999999999999999999999999999999999999998 88877755
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
++ .+|. . ..+.||. ||+
T Consensus 148 ~~------------~~~~---~-------------------------------------~~~ls~~-----------vP~ 164 (253)
T d1on3a1 148 YG------------KMFF---A-------------------------------------NVKLSGV-----------VPQ 164 (253)
T ss_dssp HH------------HHHH---H-------------------------------------HHHHTTT-----------SCE
T ss_pred cc------------eehH---H-------------------------------------HHHHhcc-----------ceE
Confidence 44 1110 0 1112222 699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISAI 1824 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~i 1824 (2267)
|++++|||+||+||.+.++|++||++++.|+|+||++|++++|+++ ++++|||+++|. +||++|++++||.++++.+
T Consensus 165 i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~vVe~~~ge~~--~~eelGga~~h~~~sG~iD~v~~~e~~a~~~~ 242 (253)
T d1on3a1 165 IAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDV--TADELGGAEAHMAISGNIHFVAEDDDAAELIA 242 (253)
T ss_dssp EEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCC--CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred EEEEecCcccceeeccchhhheeccccceEEecCcchhhhhhCCcC--ChHhccCHHHhhhccccceEEECCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 899999999997 7999999999999999999
Q ss_pred HHHHhcCCCCC
Q 000092 1825 LKWLSYVPPHI 1835 (2267)
Q Consensus 1825 ~~~LsylP~~~ 1835 (2267)
++||||||+|+
T Consensus 243 r~lls~lP~nn 253 (253)
T d1on3a1 243 KKLLSFLPQNN 253 (253)
T ss_dssp HHHHHTSCSST
T ss_pred HHHHHhcccCC
Confidence 99999999875
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1.8e-30 Score=301.52 Aligned_cols=177 Identities=27% Similarity=0.412 Sum_probs=156.4
Q ss_pred ceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1586 NIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1586 ~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
..|+|++.+++ +||+|+|+++|+||++||+|+.+++|+.++.++|.++++|+|+|.+|||+||+ |+..++.+
T Consensus 73 ~dgvV~G~G~I------~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~~P~I~~~dsgG~r~~--e~~~~l~~ 144 (251)
T d1vrga1 73 RDGVITGVGEI------NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQ--EGVDALAG 144 (251)
T ss_dssp GGGEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGG--GTHHHHHH
T ss_pred ccceEEEEEEE------ccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccc--cccccccc
Confidence 36799999877 99999999999999999999999999999999999999999999999999998 77777644
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
+. .+|.. +...|| .||+
T Consensus 145 ~~------------~~~~~----------------------------------------~~~~s~-----------~iP~ 161 (251)
T d1vrga1 145 YG------------EIFLR----------------------------------------NTLASG-----------VVPQ 161 (251)
T ss_dssp HH------------HHHHH----------------------------------------HHHHTT-----------TSCE
T ss_pred ch------------HHHHH----------------------------------------HHHHCC-----------CCCE
Confidence 33 11110 001122 2699
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecC-CcceecchHHHHHhhccccccccccCCcccccc-ccCceEEEecCcHHHHHH
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLD-QPIILTGFSALNKLLGREVYSSHMQLGGPKIMA-TNGVVHLTVSDDLEGISA 1823 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~-a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~-~nGv~d~~v~dd~e~~~~ 1823 (2267)
|++++|||+||+||.+.++|++||+++ +.|+++||++++.++|+++ ++++|||+++|. +||++|.+++||.++++.
T Consensus 162 I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~aGp~vv~~~~ge~~--~~eelGga~~h~~~sG~~D~v~~de~~a~~~ 239 (251)
T d1vrga1 162 ITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEEI--SQEDLGGAMVHNQKSGNAHFLADNDEKAMSL 239 (251)
T ss_dssp EEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCC--CHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred EEEEccCccccceehhhhCceEEEEccceeEEecCchhhhhhcCCcC--ChHHccchhhhhhccccceEEECCHHHHHHH
Confidence 999999999999999999999999866 6899999999999999998 899999999997 699999999999999999
Q ss_pred HHHHHhcCCCCC
Q 000092 1824 ILKWLSYVPPHI 1835 (2267)
Q Consensus 1824 i~~~LsylP~~~ 1835 (2267)
+++||||||+|+
T Consensus 240 ir~lLs~LP~nn 251 (251)
T d1vrga1 240 VRTLLSYLPSNN 251 (251)
T ss_dssp HHHHHTTSCSST
T ss_pred HHHHHHhCCCCC
Confidence 999999999875
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=99.95 E-value=2.7e-29 Score=296.43 Aligned_cols=178 Identities=19% Similarity=0.239 Sum_probs=147.5
Q ss_pred eeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhccc
Q 000092 1587 IGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFEI 1666 (2267)
Q Consensus 1587 ~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~v 1666 (2267)
.|||++++++ +||+|+|++||+||++||+|+.+++|+.|++++|.++++|+|+|.||+||||+.+++.+..+
T Consensus 92 ~~vV~G~g~i------~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~lP~I~l~ds~Ga~~~~~~e~~~~~-- 163 (287)
T d1pixa2 92 VAIVKGLGRV------NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNR-- 163 (287)
T ss_dssp CSEEEEEEEE------TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSST--
T ss_pred CCceEEEeec------ccceEEEEEeccccccccchhhHHHHHHHHHHhhhhcCCCEEEEecCCcccCCcchhhccch--
Confidence 4799999877 99999999999999999999999999999999999999999999999999999665554321
Q ss_pred cccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceEE
Q 000092 1667 GWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFTL 1746 (2267)
Q Consensus 1667 ~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipti 1746 (2267)
.+++.+|.. +.. .|+. .||+|
T Consensus 164 ---------~~~g~~~~~---~a~-------------------------------------ls~~----------~VP~I 184 (287)
T d1pixa2 164 ---------RGGGTPFFR---NAE-------------------------------------LNQL----------GIPVI 184 (287)
T ss_dssp ---------TSTTHHHHH---HHH-------------------------------------HHHT----------TCCEE
T ss_pred ---------hhHHHHHHH---HHH-------------------------------------Hhhc----------CCCeE
Confidence 233333321 111 1111 37999
Q ss_pred EEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHh-----------------hccccccccccCCcccccc-ccC
Q 000092 1747 TYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKL-----------------LGREVYSSHMQLGGPKIMA-TNG 1808 (2267)
Q Consensus 1747 s~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~-----------------lG~evy~s~~~lGG~~i~~-~nG 1808 (2267)
++|+|+|+|||||.+..++++++.+++.|+|+||++++.+ +|+++ +.++|||+++|+ ++|
T Consensus 185 svv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge~~--~~eeLGGa~~H~~~sG 262 (287)
T d1pixa2 185 VGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTG--KTEPPGAVDIHYTETG 262 (287)
T ss_dssp EEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTTC--CCCCSSBHHHHTTTSC
T ss_pred EEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcccc--cccccccHHHhhhhcc
Confidence 9999999999999765455555566789999999886554 58888 789999999998 699
Q ss_pred ceEEEecCcHHHHHHHHHHHhcCCC
Q 000092 1809 VVHLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1809 v~d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
++|++++||+++++.+++||||||+
T Consensus 263 ~~d~v~~~e~~ai~~~r~~ls~lPq 287 (287)
T d1pixa2 263 FMREVYASEEGVLEGIKKYVGMLPK 287 (287)
T ss_dssp CSCEEESSHHHHHHHHHHHHHTSCC
T ss_pred cceeecCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999995
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.5e-29 Score=255.57 Aligned_cols=116 Identities=59% Similarity=1.105 Sum_probs=109.9
Q ss_pred ceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 438 ~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+||||+||||||||.++|.|++|+|+.+.+|++++||+++++..|+.|+++||||+||||+||+||++|+++|.+||+++
T Consensus 1 rGhaIE~Ri~AEdP~~~F~Ps~G~i~~~~~p~~~~vR~d~~~~~G~~v~~~YDsmlAKlI~~g~~R~~Ai~rl~~aL~e~ 80 (116)
T d1w96a1 1 KGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 80 (116)
T ss_dssp CSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSEEEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEecccCCCCcccCCceeeEEEEcCCceeeeeeccccCcccccccChHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 518 QIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 518 ~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
.|.|+|+||++||++||++|+|++|+++|+|||+++
T Consensus 81 ~I~G~v~TN~~fL~~iL~~~~F~~g~~~T~fle~~i 116 (116)
T d1w96a1 81 SIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDDLI 116 (116)
T ss_dssp TTCC----CCHHHHHHHTSHHHHTTCCCTTHHHHHC
T ss_pred eEeccccccHHHHHHHhCChhhccCCcchHHHHhhC
Confidence 999988999999999999999999999999999864
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.5e-28 Score=282.72 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=154.3
Q ss_pred CCCcCcccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEc
Q 000092 1569 GTWGTPLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAA 1648 (2267)
Q Consensus 1569 g~~~~~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ 1648 (2267)
.+|.+++.+..+.+|.+++ +|++.+++ +||+|+|+++||||++||+|..+++|+.++.|+|.+.++|+|+|.+
T Consensus 67 ~~y~~~~~~~~~~tg~~d~-vv~g~G~i------~G~~v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~lPlI~~~~ 139 (263)
T d2f9yb1 67 KKYKDRLASAQKETGEKDA-LVVMKGTL------YGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSA 139 (263)
T ss_dssp GGTC------CCSSCCSSS-EEEEECEE------TTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cccccchhhhccccCCCCc-eEEEEEEE------CCEEEEEEeeeehhhccccccchhhHHhHHHHHHHHcCCCeEEEec
Confidence 4567778888888888766 88899876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccc
Q 000092 1649 NSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTG 1728 (2267)
Q Consensus 1649 ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~ 1728 (2267)
|||+||+ |+..++++|. +.+ +.. ..++.
T Consensus 140 sgG~r~~--e~~~sl~~~~--------~~~---------~~~---------------------------------~~~~~ 167 (263)
T d2f9yb1 140 SGGARMQ--EALMSLMQMA--------KTS---------AAL---------------------------------AKMQE 167 (263)
T ss_dssp ESSBCGG--GTHHHHHHHH--------HHH---------HHH---------------------------------HHHHH
T ss_pred CCCcccc--cccchhhcch--------hHH---------HHH---------------------------------HHHHh
Confidence 9999999 8888887655 100 000 00111
Q ss_pred cccccccccccccCceEEEEEcCcccchhhhhhc-cCCeEEEecCCcceecchHHHHHhhccccccccccCCcccccccc
Q 000092 1729 SGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR-LGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1729 sG~iag~~s~a~~~iptis~vtg~~~G~gAyl~~-lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~~~lGG~~i~~~n 1807 (2267)
..||+|++++|+|+||+||.+. ++|++++.+++.|+|+||++|++++|+++ ++++||+++|.+|
T Consensus 168 ------------~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~vve~~~ge~~---~e~~g~a~~~~~~ 232 (263)
T d2f9yb1 168 ------------RGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---PPGFQRSEFLIEK 232 (263)
T ss_dssp ------------TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---CTTTTBHHHHGGG
T ss_pred ------------CCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHHHHhhhcCCcC---ChhhccHHHHHhC
Confidence 1269999999999999887555 45666666678999999999999999998 6899999999999
Q ss_pred CceEEEecCcH--HHHHHHHHHHhcCCCCC
Q 000092 1808 GVVHLTVSDDL--EGISAILKWLSYVPPHI 1835 (2267)
Q Consensus 1808 Gv~d~~v~dd~--e~~~~i~~~LsylP~~~ 1835 (2267)
|++|.++++++ +.+.+++++|+|+|+++
T Consensus 233 G~iD~vv~~ee~~~~l~~~l~~L~~~p~~~ 262 (263)
T d2f9yb1 233 GAIDMIVRRPEMRLKLASILAKLMNLPAPN 262 (263)
T ss_dssp TCCSEECCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCEEECCHHHHHHHHHHHHHHhhCCCCC
Confidence 99999998765 44667777888888754
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.3e-28 Score=250.19 Aligned_cols=114 Identities=30% Similarity=0.566 Sum_probs=111.8
Q ss_pred ceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 438 ~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+||||+|||||||| ++|.|++|+|+.+.+|++++||++.++.+|..|+++||||+||||+||+||++|+++|.+||+++
T Consensus 1 rGhAIE~Ri~AEdp-~~f~Ps~G~i~~~~~p~g~gvRvDs~v~~G~~v~~~YDsmiAKlI~~g~~R~~Ai~~l~~aL~e~ 79 (116)
T d2j9ga1 1 RGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQEL 79 (116)
T ss_dssp CSEEEEEEEECBCT-TTCSBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEeccCC-CcCccCCeeeeEEECCCCCCeeeeeeeeCCcEeccccchHHHHHhhcCCCHHHHHHHHHHHHHhc
Confidence 59999999999999 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 518 QIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 518 ~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
.|.| ++||++||++||++|+|++|+++|+|||+++
T Consensus 80 ~I~G-v~TN~~~l~~il~~~~f~~g~~~T~fl~~~l 114 (116)
T d2j9ga1 80 IIDG-IKTNVDLQIRIMNDENFQHGGTNIHYLEKKL 114 (116)
T ss_dssp EEES-SCCSHHHHHHHHTCHHHHHCCCCTTHHHHHH
T ss_pred cccC-cCccHHHHHHHhCChhhccCCceehHHHhhc
Confidence 9999 9999999999999999999999999999975
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.94 E-value=6.2e-28 Score=249.40 Aligned_cols=115 Identities=18% Similarity=0.406 Sum_probs=112.8
Q ss_pred ceEEEEEEEccCCCCCCCCCCCCccccccccCCCcEEEEEeeeeCCcccccCCcccEEEEEEeCCHHHHHHHHHHhhcce
Q 000092 438 KGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEI 517 (2267)
Q Consensus 438 ~Ghai~aRI~aEdp~~~F~Ps~G~i~~l~~~s~~~V~~~~~v~~G~~i~~~~Ds~~g~via~G~~reeA~~~l~~AL~el 517 (2267)
+||||+||||||||.++|.|++|+|+.+.+|++++||++.++.+|..|+++||||+||||+||+||++|+++|.+||+++
T Consensus 2 ~GhAIE~Ri~AEdp~~~F~Ps~G~i~~~~~P~~~~vRvdt~v~~G~~v~~~YDsmiAKlIv~g~~R~~Ai~rl~~aL~e~ 81 (123)
T d1ulza1 2 NGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETY 81 (123)
T ss_dssp CSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTC
T ss_pred CcEEEEEEEecccCCCCccCCCCcceeeecccccceeecccccCCCEeccchhHHHHHHHhhCccHHHHHHHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCHHHHHHhcCCcccccccccchhhhhhh
Q 000092 518 QIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRI 553 (2267)
Q Consensus 518 ~I~G~v~tn~~~l~~ll~~~~f~~~~~~T~~ld~~~ 553 (2267)
.|.| +.||++||++||++|+|++|+++|+|||++.
T Consensus 82 ~I~G-v~TNi~fl~~il~~~~F~~g~~~T~fle~~~ 116 (123)
T d1ulza1 82 EITG-VKTTIPLLINIMKEKDFKAGKFTTKYLEEHP 116 (123)
T ss_dssp EECS-SCCSHHHHHHHHHCHHHHHTCCCTTTTTTCG
T ss_pred ccCC-cCccHHHHHHHhCChhhccCCcEehhhhcCH
Confidence 9999 9999999999999999999999999999864
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=8.5e-27 Score=236.81 Aligned_cols=114 Identities=29% Similarity=0.530 Sum_probs=107.4
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||||||++|+|++|+||+||+++ |++++ +.|++++|+++||+.+.++++++.++|+|++.|+++
T Consensus 1 m~~kvLIANRGeiA~Ri~ra~~elgi~t---------vavys--~~D~~~~h~~~ade~v~lg~~~~~~sYl~~~~Ii~~ 69 (114)
T d2j9ga2 1 MLDKIVIANRGEIALRILRACKELGIKT---------VAVHS--SADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISA 69 (114)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEE---------EEEEE--GGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceeeEecCCHHHHHHHHHHHHhCCce---------EEEec--cccccccceecCCceeecCCCchhhhhcCHHHHHHH
Confidence 7999999999999999999999998777 45555 667899999999999999998888999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhc
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALG 171 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lg 171 (2267)
|++.++|+|||||||+|||++|+++|+++||.|+||++++|+.+|
T Consensus 70 A~~~~~dAiHPGyGFLSEn~~Fa~~~~~agi~FIGP~~~~i~~mG 114 (114)
T d2j9ga2 70 AEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114 (114)
T ss_dssp HHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHH
T ss_pred HHHhCCceeecchhhhhhhHHHHHHHHHCCCEEECcCHHHHHHcC
Confidence 999999999999999999999999999999999999999999875
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.93 E-value=1.8e-26 Score=234.39 Aligned_cols=114 Identities=30% Similarity=0.510 Sum_probs=106.5
Q ss_pred CccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHH
Q 000092 47 PIHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEM 126 (2267)
Q Consensus 47 ~~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~i 126 (2267)
|||||||+|||++|+|++|+||+||+++ |++++ +.|++++|+++||+.+++++. +.++|+|.+.|+++
T Consensus 1 m~kkvLIANRGEiA~Ri~ra~~elgi~t---------vav~s--~~D~~s~~~~~ad~~~~ig~~-~~~sYln~~~Ii~~ 68 (114)
T d1ulza2 1 MVNKVLVANRGEIAVRIIRACKELGIPT---------VAIYN--EVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINL 68 (114)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCE---------EEEEC--GGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHH
T ss_pred CCceeeEecCCHHHHHHHHHHHHhcCCe---------EEEec--chhhcCcchhhcceeeecCCC-hhhhhhcHHHHHHH
Confidence 7999999999999999999999998877 45555 667899999999999999874 46899999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcC
Q 000092 127 AEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGD 172 (2267)
Q Consensus 127 A~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgD 172 (2267)
|+++++|+|||||||+|||++|++.|+++|+.|+||++++|+.+||
T Consensus 69 A~~~~~daihPGyGFLSEna~Fa~~~~~~gi~FIGP~~~~i~~mGD 114 (114)
T d1ulza2 69 ALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114 (114)
T ss_dssp HHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHS
T ss_pred HHHhCCCeEecchhhhhhHHHHHHHHHHCCCEEECcCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999998
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.3e-25 Score=265.79 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=138.5
Q ss_pred ccccCCCceecccc--cc--ceEEEEEEEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHH
Q 000092 1879 GIFDKDSFVETLEG--WA--RTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ 1954 (2267)
Q Consensus 1879 gl~D~gSF~E~~~~--~a--~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~ar 1954 (2267)
.+||+ |.|+..+ ++ +++++|+|+++|+||+||+++.+. ++ +..+.+.+|++.|++++|++|
T Consensus 78 ~i~~~--f~eL~Gdr~~~dD~aii~G~a~~~g~~V~vIg~~kg~------------~~-~~~~~~n~G~~~p~~~rKa~r 142 (316)
T d2f9ya1 78 LAFDE--FDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGR------------ET-KEKIRRNFGMPAPEGYRKALR 142 (316)
T ss_dssp HHCEE--EEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCS------------ST-THHHHTGGGCCCHHHHHHHHH
T ss_pred hcccc--hhhcccccccCcCccccceeeeecCCeEEEEEeecCC------------Cc-ccccccccccccHHHHHHHHH
Confidence 37775 6676543 44 789999999999999999998642 22 233445679999999999999
Q ss_pred HHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceee
Q 000092 1955 ALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMY 2034 (2267)
Q Consensus 1955 ai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~ 2034 (2267)
+|++|++||+|||+|+|||||.+|..+|..|+.+++|+++.++++++||+|++|+ |+.+||++.+++. .|. ++
T Consensus 143 ~~~~a~~~~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~--g~g~~gga~a~~~---~d~--v~ 215 (316)
T d2f9ya1 143 LMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVI--GEGGSGGALAIGV---GDK--VN 215 (316)
T ss_dssp HHHHHHHTTCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEE--EEEEHHHHHTTCC---CSE--EE
T ss_pred HHHHHHHcCcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEE--hhhhchhhhhhhh---hhH--HH
Confidence 9999999999999999999999999999999999999999999999999999999 7888888888876 476 99
Q ss_pred cccccEEEeeCccchhhhhcchh
Q 000092 2035 ADRTAKGNVLEPEGMIEIKFRTK 2057 (2267)
Q Consensus 2035 A~p~A~~gvl~pegav~I~~r~~ 2057 (2267)
||++|.++|++|||+++|.||+.
T Consensus 216 m~~~a~~svispEg~AsILwkd~ 238 (316)
T d2f9ya1 216 MLQYSTYSVISPEGCASILWKSA 238 (316)
T ss_dssp ECTTCEEESSCHHHHHHHHSSCS
T ss_pred HHhhhHHhhccchhhhhHhhccc
Confidence 99999999999999999999976
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.9e-25 Score=246.76 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=164.7
Q ss_pred CHHHHHHHH-HHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEEC
Q 000092 172 DKIGSSLIA-QAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVH 250 (2267)
Q Consensus 172 DK~~~k~la-q~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~ 250 (2267)
||..+|++| +++|||+|+|.. +.|.+|+.++++++||||||||+.|+||+|+++|+
T Consensus 1 ~~~~~rrla~~~~Gip~p~~~~-----------------------v~s~~dl~~~~~~ig~PvVvKP~~g~gs~gv~~v~ 57 (206)
T d1kjqa3 1 NREGIRRLAAEELQLPTSTYRF-----------------------ADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIR 57 (206)
T ss_dssp SHHHHHHHHHTTSCCCBCCEEE-----------------------ESSHHHHHHHHHHHCSSEEEEESCC---CCCEEEC
T ss_pred ChHHHHHHHHHHCCCCCCCCeE-----------------------ECCHHHHHHHHHHhCCCEEEeeccCCccCCceEEc
Confidence 788899977 689999999987 88999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCC--CCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCCCCCHHHHHH
Q 000092 251 NDDEVRALFKQVQGEVP--GSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPLETVKK 328 (2267)
Q Consensus 251 s~eEL~~a~~~~~~e~~--~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~~l~~e~~~e 328 (2267)
+.+|+.++++....... ...+++++++.+..++++....+..|.........+. . ........+....+.+...+
T Consensus 58 ~~~el~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 134 (206)
T d1kjqa3 58 SAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQ--E-DGDYRESWQPQQMSPLALER 134 (206)
T ss_dssp SGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETTEEEECCCEEEEE--E-TTEEEEEEECCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccCcceeeeeeccccceeeeeeeeecCCCceeeccceeee--c-cCccceeeccccCCHHHHHH
Confidence 99999999998776553 3578889999887788888888876655443221111 1 11222333334467888899
Q ss_pred HHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCCC
Q 000092 329 LEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQ 398 (2267)
Q Consensus 329 L~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~~ 398 (2267)
+.+.+..+.+++++.|..++||+.+ ++++||+|+|||+++++.+++.++|+|+.+.++++++|.|++.
T Consensus 135 ~~~~~~~~~~~~~~~g~~~~e~~~~--~~~~~viEin~R~~~~~~~~~~~~~v~~~e~~ir~~~Glp~~~ 202 (206)
T d1kjqa3 135 AQEIARKVVLALGGYGLFGVELFVC--GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG 202 (206)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEEEESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHhhhhhhhceeeeccccccc--cCCceEEEeecCcccccceehhhcCCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999998 7889999999999999999999999999999999999999874
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.1e-23 Score=231.99 Aligned_cols=193 Identities=16% Similarity=0.111 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..||++++++|||||+|.. +.|.+|+.++++++|||+|+||..|++|.|..++.+
T Consensus 1 DK~~~K~~l~~~GIptp~~~~-----------------------v~s~~d~~~~~~~ig~P~vvKp~~~~~~~~~~~v~~ 57 (198)
T d3etja3 1 DRLTQKQLFDKLHLPTAPWQL-----------------------LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLR 57 (198)
T ss_dssp SHHHHHHHHHHTTCCBCCEEE-----------------------ECCGGGHHHHHHHHCSCEEEEESSSCBTTBSEEEEC
T ss_pred CHHHHHHHHHHCCcCCCCceE-----------------------ECCHHHHHHHHHHcCCCeeeeecccccccceeeecc
Confidence 899999999999999999987 889999999999999999999998887766666666
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccce-EEEecCCCCCCHHHHHHHH
Q 000092 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQK-IIEEGPITVAPLETVKKLE 330 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qK-iieeaPa~~l~~e~~~eL~ 330 (2267)
.+++..++.. ....+++|+|+.+.+++++.++.+..+.+...... .....+.. .....|+. .+++...++.
T Consensus 58 ~~~~~~~~~~-----~~~~~i~ee~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~-~~~~~~~~~~ 129 (198)
T d3etja3 58 ANETEQLPAE-----CYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLT--HNLHQDGILRTSVAFPQ-ANAQQQARAE 129 (198)
T ss_dssp GGGGGGSCGG-----GTTTEEEEECCCCSEEEEEEEEECTTSCEEECCCE--EEEEETTEEEEEEECSS-CCHHHHHHHH
T ss_pred hhhHHHHHhc-----cCceEEEeeeccccccccceeeecccceeeeecee--eccccccceeeeeeccc-cccchhhhhh
Confidence 5655443222 13579999999988999999999988877654221 11222222 22234554 7899999999
Q ss_pred HHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCCCC
Q 000092 331 QAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLW 397 (2267)
Q Consensus 331 ~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~pL~ 397 (2267)
+.+.++++++++.|..++||+++ ++++||+|+|||+++++.++..++|+|+.+.+++.++|+||+
T Consensus 130 ~~~~~~~~~l~~~g~~~~~~~~~--~~~~~v~Evn~Rp~~~g~~~~~~~~~s~~e~~~ra~lglpl~ 194 (198)
T d3etja3 130 EMLSAIMQELGYVGVMAMECFVT--PQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLP 194 (198)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCC
T ss_pred hhhhHHHHhhhhcccchhheeec--CCcEEEEEEECCcccccceEeecccCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999 678999999999999988999999999999999999999986
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.7e-22 Score=229.79 Aligned_cols=198 Identities=21% Similarity=0.211 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
+|..||++++++|||||+|.. ++|.+++.++++++||||||||+.|+||+||++|+|
T Consensus 1 sK~~~K~~l~~~gIptp~~~~-----------------------~~~~~e~~~~~~~ig~PvVvKP~~~~gs~Gv~~v~~ 57 (220)
T d1vkza3 1 SKVYAKRFMKKYGIRTARFEV-----------------------AETPEELREKIKKFSPPYVIKADGLARGKGVLILDS 57 (220)
T ss_dssp CHHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESS
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------eCCHHHHHHHHHHcCCCEEEEeccccccccceeecc
Confidence 599999999999999999876 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEec-ccc-cccccccceEEE-----ecCCCC
Q 000092 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALH-SRD-CSVQRRHQKIIE-----EGPITV 320 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~-~Rd-csvqrr~qKiie-----eaPa~~ 320 (2267)
.+++.++++.+..... ...+++|+|++| ++++|+.+.++. ++..+. .++ ......+.+... ..|.+
T Consensus 58 ~~el~~a~~~~~~~~~~~~~~~~vliEe~i~g-~e~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 134 (220)
T d1vkza3 58 KEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVVNGR-NFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE- 134 (220)
T ss_dssp HHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEEETT-EEEECCCCEECCEEETTTEEEECSCSEEEECCC-
T ss_pred HHHHHHHhhhhccccccccccceEeeeccccc-ccceeEEEEeCC-EEEEcccccccccccccccccccccccccccCC-
Confidence 9999999998875532 457999999987 799999998753 333321 111 112222222221 11222
Q ss_pred CCHHHHHHHHHHHHHHHH-----HcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcC---CHHHHHHHHHc
Q 000092 321 APLETVKKLEQAARRLAK-----CVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEI---NLPAAQVAVGM 392 (2267)
Q Consensus 321 l~~e~~~eL~~~A~rla~-----aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGv---DL~~~qL~iA~ 392 (2267)
.+.....+..+....+.+ .++++|..++||+++ ++++||||+|+|+|. |.++.+.++ ||+++++++|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~d~~~~--~~gp~viEiN~R~G~--~~~~~~~~~~~~dl~~~~l~~a~ 210 (220)
T d1vkza3 135 IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLH--DGDPYILEYNVRLGD--PETEVIVTLNPEGFVNAVLEGYR 210 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEE--TTEEEEEEEESSCCT--THHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhhccceeEEEee--CCCEEEEEEECCCCC--CcceeeeecccccHHHHHHHHHc
Confidence 233333333333333322 345679999999998 788999999999963 444444333 99999999999
Q ss_pred CCCCCCc
Q 000092 393 GIPLWQI 399 (2267)
Q Consensus 393 G~pL~~i 399 (2267)
|.+|+.+
T Consensus 211 g~~l~~~ 217 (220)
T d1vkza3 211 GGKMEPV 217 (220)
T ss_dssp TSCCCCC
T ss_pred CCCcCcC
Confidence 9998753
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.87 E-value=9.8e-23 Score=235.03 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..+|++++++|||+|.+.. .++++||||||||+.|+||+|+++|+|
T Consensus 1 DK~~~k~~l~~~Gip~P~~~~--------------------------------~~~~i~~PvVVKP~~g~gs~Gv~~v~~ 48 (238)
T d2r7ka2 1 ERSLEGKLLREAGLRVPKKYE--------------------------------SPEDIDGTVIVKFPGARGGRGYFIASS 48 (238)
T ss_dssp CHHHHHHHHHHTTCCCCCEES--------------------------------SGGGCCSCEEEECSCCCC---EEEESS
T ss_pred CHHHHHHHHHHCCCCCccccc--------------------------------CHhHCCCCEEEEECCCCCCCCeEEeCC
Confidence 899999999999999997432 346799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC-----CcEEEEEeccccceeeEEEEEcCCCCE-------------EEeccccccccccc----
Q 000092 252 DDEVRALFKQVQGEVPG-----SPIFIMKVASQSRHLEVQLLCDQYGNV-------------AALHSRDCSVQRRH---- 309 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~~-----~~I~VEeyI~g~rhieVqvl~D~~G~v-------------i~l~~Rdcsvqrr~---- 309 (2267)
.+++.++++.+.++... .++++|+|++| .+++++++.+..+.. +....+.|..+.++
T Consensus 49 ~~el~~a~~~~~~~~~~~~~~~~~v~vEe~i~G-~e~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T d2r7ka2 49 TEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNIN 127 (238)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEeecC-ceEEEEEeecccccceEEEeeccCCccEEEEEEEcCHHheeccCcc
Confidence 99999999998766432 47999999988 567776665433222 22233334333333
Q ss_pred -ceEEEecCCCCCCHHHHHHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCC
Q 000092 310 -QKIIEEGPITVAPLETVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEIN 382 (2267)
Q Consensus 310 -qKiieeaPa~~l~~e~~~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvD 382 (2267)
.......|+..++++..+++.+.+.++++++ ||.|++++||++|+ +|++||+|||||++|++++.. .|.+
T Consensus 128 ~~~~~~~~~~~~l~~~~~~~i~~~~~~i~~~l~~~~~~~~~G~~~ve~~~~~-dg~~~viEinpR~~G~~~~~~--~~~~ 204 (238)
T d2r7ka2 128 PSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSFM--NGGP 204 (238)
T ss_dssp CCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGGT--TCCT
T ss_pred ccCccccccCccccHHHHHHHHHHHHHHHHHHHHhcccCccccccHhhHhhc-CCCEEEEEEECCCCCCCccee--ccCC
Confidence 2333445777788999999999999999998 89999999999995 788999999999999988765 4445
Q ss_pred HHHHHH--HHHcCC
Q 000092 383 LPAAQV--AVGMGI 394 (2267)
Q Consensus 383 L~~~qL--~iA~G~ 394 (2267)
++.++. .+++|.
T Consensus 205 ~~~~~~~~~~~~g~ 218 (238)
T d2r7ka2 205 YSFLYNGEPLSMGQ 218 (238)
T ss_dssp THHHHHSSCCCHHH
T ss_pred CCHHHHhCcchhhh
Confidence 444443 344443
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.86 E-value=1.4e-21 Score=219.94 Aligned_cols=199 Identities=16% Similarity=0.253 Sum_probs=154.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~ 252 (2267)
|+.+|++++++|||||+|.. +...-+. ....+++....+.+|||+||||..|+||+||.+|++.
T Consensus 1 K~~tk~~~~~~Giptp~~~~-------------~~~~~~~---~~~~~~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~ 64 (210)
T d1iowa2 1 KLRSKLLWQGAGLPVAPWVA-------------LTRAEFE---KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 64 (210)
T ss_dssp HHHHHHHHHHTTCCBCCEEE-------------EEHHHHH---HCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSG
T ss_pred CHHHHHHHHHcCCCCCCeEE-------------Eechhhc---ccchHHHHHHHHhcCCCEEEeeccccCceecccccch
Confidence 89999999999999999875 0000000 1123455566788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccc---eEEEecCCCCCCHHHHHHH
Q 000092 253 DEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQ---KIIEEGPITVAPLETVKKL 329 (2267)
Q Consensus 253 eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~q---KiieeaPa~~l~~e~~~eL 329 (2267)
++|.++++.... .+..+++|+|++| +|+++.+++|..+..+.+...++....+.. ......+....++....++
T Consensus 65 ~el~~~~~~~~~--~~~~vlve~~i~g-~e~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (210)
T d1iowa2 65 NALQDALRLAFQ--HDEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANL 141 (210)
T ss_dssp GGHHHHHHHHTT--TCSEEEEEECCCC-CEEEEEEETTEECCCEEEECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHH
T ss_pred hhhhHHHHHhhc--cCccccccccccC-ceeEEEeecCcccceeEEecccceeeecccccccccccccccccccccchhH
Confidence 999999987653 3568999999987 899999998876666666666665543321 1222334455788899999
Q ss_pred HHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCc----ceehhhhcCCHHHHHHHHH
Q 000092 330 EQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 330 ~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgeh----pvtE~vtGvDL~~~qL~iA 391 (2267)
.+.+.++++++|+.|.++|||+++ ++|++||||+|+|++..+ +.....+|+|+.++..++.
T Consensus 142 ~~~~~~~~~~~~~~g~~~vdf~~d-~~g~~~~lEiN~~pg~~~~s~~~~~~~~~Gi~~~~li~~ii 206 (210)
T d1iowa2 142 QALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 206 (210)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEEEC-TTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEEEC-CCCCEEEEEEeCCCCCCCccHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999998 478999999999997542 4444568999988766543
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.1e-21 Score=218.90 Aligned_cols=197 Identities=17% Similarity=0.148 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
+|..+|.+++++|||||+|.. +++.+++.++++++|||+||||+.++||+||++|++
T Consensus 1 SK~f~K~~~~~~~IPt~~~~~-----------------------~~~~~ea~~~~~~~~~P~VvK~~~~~~gkGv~i~~~ 57 (224)
T d1gsoa3 1 SKAFTKDFLARHKIPTAEYQN-----------------------FTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 57 (224)
T ss_dssp CHHHHHHHHHHTTCCBCCEEE-----------------------ESSSSHHHHHHHHHCSSEEEEC------CCEEEESS
T ss_pred CHHHHHHHHHHcCCCCCCceE-----------------------eCCHHHHHHHHHHcCCCEEEEeCCcccccceeeehh
Confidence 589999999999999999876 778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCcEEEEEeccccceeeEEEEEcCCCCEEEec-cc------ccccccccceEEEecCCCC
Q 000092 252 DDEVRALFKQVQGEVP----GSPIFIMKVASQSRHLEVQLLCDQYGNVAALH-SR------DCSVQRRHQKIIEEGPITV 320 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~----~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~-~R------dcsvqrr~qKiieeaPa~~ 320 (2267)
.+++.++++.+..... +..++||+|+.| +|++++++.|+. +++.+. .+ |+....+.......+|++.
T Consensus 58 ~~e~~~a~~~~~~~~~~~~~~~~vliEefl~G-~E~s~~~i~dg~-~~~~~~~~~d~kr~~d~~~gp~tggmg~~~P~p~ 135 (224)
T d1gsoa3 58 LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDG-EEASFIVMVDGE-HVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPV 135 (224)
T ss_dssp HHHHHHHHTTTTCSCCTTCTTCCEEEEECCCE-EEEEEEEEEESS-CEEEEEEEEEEEEEETTTEEEEEEEEEEEESCTT
T ss_pred HHHHHHHHHHHHhcccccccCceEEeeccccc-ccceeEEEeccC-ceEeeecccccccccccccccccccccccCCCch
Confidence 9999999998876543 468999999987 799999999874 544332 11 2333344455566788887
Q ss_pred CCHHHHHHHH----HHHHHHHHHcC--ceeeeEEEEEEEccCCcEEEeeeCccCcC-CcceehhhhcCCHHHHHHHHHcC
Q 000092 321 APLETVKKLE----QAARRLAKCVN--YVGAATVEYLYSMETGEYYFLELNPRLQV-EHPVTEWIAEINLPAAQVAVGMG 393 (2267)
Q Consensus 321 l~~e~~~eL~----~~A~rla~aLG--y~Ga~tVEfl~d~~~g~~yfLEINpRlqg-ehpvtE~vtGvDL~~~qL~iA~G 393 (2267)
.++.+.+++. +.+.+.+++.| |+|+.+++|+++ ++|++||||+|+|++. +...+-.....||.++++.++.|
T Consensus 136 ~~~~l~~~~~~~i~~~~~~~~~~~g~~~~G~l~~~~mit-~~G~p~vlE~N~R~Gdpe~~~il~~l~~dl~e~~~~~~~g 214 (224)
T d1gsoa3 136 VTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMID-KQGNPKVIEFNCRFGDLETQPIMLRMKSDLVELCLAACES 214 (224)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE-TTCCEEEEEEESSCCTTTHHHHHHHBCSCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCceeeeeeccceeee-eCCCEEEEEEecCCCCCcceeehhhhcCCHHHHHHHHHhC
Confidence 7766655544 44566667666 469999999999 3667999999999962 33222223456999999999998
Q ss_pred C
Q 000092 394 I 394 (2267)
Q Consensus 394 ~ 394 (2267)
.
T Consensus 215 ~ 215 (224)
T d1gsoa3 215 K 215 (224)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.84 E-value=2.5e-20 Score=212.20 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..+|++++++|||||+|.. ++ .. ..+.+.+.+.++.+|||+|+||..|+||+||.+++|
T Consensus 1 dK~~~k~~l~~~gi~tp~~~~----~~---------~~------~~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~ 61 (228)
T d1ehia2 1 DKALTKELLTVNGIRNTKYIV----VD---------PE------SANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN 61 (228)
T ss_dssp SHHHHHHHHHTTTCCCCCEEE----EC---------TT------GGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECS
T ss_pred CHHHHHHHHHHcCCCCCCEEE----Ec---------hh------hcChHHHHHHHHHhCCCEEEEEeccCCCccceeccc
Confidence 899999999999999999865 10 00 011223456678899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceE------------EEecCCC
Q 000092 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKI------------IEEGPIT 319 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKi------------ieeaPa~ 319 (2267)
.+||..+++.+... ...+++|+|+.|.+++++.++.++.+.+..+....+.......++ ....+..
T Consensus 62 ~~el~~~~~~~~~~--~~~~liee~i~g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 139 (228)
T d1ehia2 62 AEEYTEALSDSFQY--DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPA 139 (228)
T ss_dssp HHHHHHHHHHHTTT--CSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSC
T ss_pred cchhhhhhhhhccc--ccccccceEEeccceEEEEEeeCCCcceeeeeeeeccccccccceeeeeccccccccccccchh
Confidence 99999999987654 468999999999999999888877655554443333222211111 1123444
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCC-c---ceehhhhcCCHHHHH
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE-H---PVTEWIAEINLPAAQ 387 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge-h---pvtE~vtGvDL~~~q 387 (2267)
.++++..+++.+.+.++++++|+.|.+++||++++ +|++||||+|||++-. + |..-..+|+|+.++.
T Consensus 140 ~~~~~~~~~i~~~~~~~~~~lg~~~~~~iD~~~d~-~g~~~~lEvN~~Pg~~~~s~~~~~~~~~G~~~~~li 210 (228)
T d1ehia2 140 QLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLV 210 (228)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCeeeEEEEEcC-CCcEEEEEecCCCCCCcccHHHHHHHHhCCCHHHHH
Confidence 58899999999999999999999999999999984 7899999999998743 1 333235899977653
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.82 E-value=4.4e-20 Score=207.74 Aligned_cols=185 Identities=18% Similarity=0.259 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||+.++.+++++|||||+|.. +++.++ ..+++++||+||||..||||+||.+|++
T Consensus 1 DK~~~~~~~~~~Gi~tP~~~~-----------------------~~~~~~--~~~~~~~fP~viKP~~gg~s~Gv~~v~~ 55 (211)
T d1e4ea2 1 DKSLTYIVAKNAGIATPAFWV-----------------------INKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNS 55 (211)
T ss_dssp SHHHHHHHHHHTTCBCCCEEE-----------------------ECTTCC--CCGGGSCSCEEEEESSCCTTTTCEEECS
T ss_pred CHHHHHHHHHHCCCCCCCeEE-----------------------ECchhH--HHHHhcCCCEEEeeccccCcchhccccc
Confidence 899999999999999999875 211111 2356799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccc------ccccccc------cceEEEecCCC
Q 000092 252 DDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSR------DCSVQRR------HQKIIEEGPIT 319 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~R------dcsvqrr------~qKiieeaPa~ 319 (2267)
.+|+..+++.+... ...+++|+|+++ +++++.++.+..+.+...... .|..... ........|+.
T Consensus 56 ~~el~~~~~~~~~~--~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 132 (211)
T d1e4ea2 56 ADELDYAIESARQY--DSKILIEQAVSG-CEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD 132 (211)
T ss_dssp GGGHHHHHHHHTTT--CSSEEEEECCCS-EEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS
T ss_pred cccchhhccccccc--cccccccccccc-ccceeeccCCCcceeeeeceeeccccchhhhhhhhhhcccccceeeecccc
Confidence 99999999988755 357999999976 799999998876544321111 1111000 01122344655
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCC--cceeh--hhhcCCHHHH
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVE--HPVTE--WIAEINLPAA 386 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqge--hpvtE--~vtGvDL~~~ 386 (2267)
.++...+++.+.|.++++++|+.|++++||++++ +|++||||+|||++.. ..+.+ ...|+|++++
T Consensus 133 -~~~~~~~~i~~~a~~~~~~lg~~g~~~id~~~~~-~g~~~viEiN~~pg~~~~s~~~~~~~~~G~~~~~l 201 (211)
T d1e4ea2 133 -LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD-NGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPEL 201 (211)
T ss_dssp -SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHH
T ss_pred -ccHhhhhhhHHHHHHHHHhhccCCeeEEEEEEcC-CCCEEEEEEeCCCCCCCccHHHHHHHHcCCCHHHH
Confidence 6788889999999999999999999999999984 7889999999988643 22333 3479998765
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=1.6e-20 Score=207.13 Aligned_cols=188 Identities=14% Similarity=0.194 Sum_probs=128.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCH
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHND 252 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~ 252 (2267)
|+.++++++++|||+|+|.. +.+.+++.++++++|||+|+||..|+||+||.++.+.
T Consensus 1 K~~~~~~l~~~GipvP~t~~-----------------------~~~~~~~~~~~~~~g~P~ivKP~~g~~g~gv~~~~~~ 57 (192)
T d1uc8a2 1 KWATSVALAKAGLPQPKTAL-----------------------ATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXX 57 (192)
T ss_dssp HHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHH
T ss_pred CHHHHHHHHHcCcCCCCEEE-----------------------ECCHHHHHHHHHHhCCCEEEECCcCCcccceeecccc
Confidence 89999999999999999876 7899999999999999999999999999999877776
Q ss_pred HHHHHHHHH--HHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEe-cCCCCCCHHHHHHH
Q 000092 253 DEVRALFKQ--VQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEE-GPITVAPLETVKKL 329 (2267)
Q Consensus 253 eEL~~a~~~--~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiiee-aPa~~l~~e~~~eL 329 (2267)
++....... ........++++|+|+++. ++++.++..+ |.++....+.. ....+...... .+....+ ...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~lvqefi~g~-~~~~~v~~~~-g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~ 130 (192)
T d1uc8a2 58 XXXXXXXXXKEVLGGFQHQLFYIQEYVEKP-GRDIRVFVVG-ERAIAAIYRRS-AHWITNTARGGQAENCPLT----EEV 130 (192)
T ss_dssp HC------------CTTTTCEEEEECCCCS-SCCEEEEEET-TEEEEEEEC---------------CEECCCC----HHH
T ss_pred ccchhhHHHHHHHhccCCCCEEEEEecCCC-CeeEEEEEEC-CEEEeEEEeee-cccccccccccccccccch----hhh
Confidence 666554442 2333345689999999885 4566666654 45554433221 11111100011 1111122 234
Q ss_pred HHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCccCcCCcceehhhhcCCHHHHHHHHHcCCC
Q 000092 330 EQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIP 395 (2267)
Q Consensus 330 ~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE~vtGvDL~~~qL~iA~G~p 395 (2267)
...+.++.++++ .|.++|||+++ ++++||||+|||++.++ ++..+|+|+++.+++.|+++.
T Consensus 131 ~~~~~~~~~~~~-~g~~~vD~~~~--~~~~~vlEiN~r~g~~~--~~~~~G~d~~~~ii~~a~~la 191 (192)
T d1uc8a2 131 ARLSVKAAEAVG-GGVVAVDLFES--ERGLLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWSLA 191 (192)
T ss_dssp HHHHHHHHHHTT-CSEEEEEEEEE--TTEEEEEEEETTCCCTT--HHHHHCCCHHHHHHHHHHHTC
T ss_pred hhhhhhHHHhhh-ccccceEEEec--CCCEEEEEEcCCCchhH--HHHHHCcCHHHHHHHHHHHhh
Confidence 444455555554 58899999999 67899999999998765 577899999999999998753
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.79 E-value=1.4e-19 Score=207.16 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECC
Q 000092 172 DKIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHN 251 (2267)
Q Consensus 172 DK~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s 251 (2267)
||..+|++++++|||+|+... .++++||||||||..|+||+|+++|++
T Consensus 1 DK~~~k~~l~~~Gip~P~~~~--------------------------------~~~~i~~P~IVKP~~g~gs~Gv~~v~~ 48 (235)
T d2r85a2 1 DRNLERKWLKKAGIRVPEVYE--------------------------------DPDDIEKPVIVKPHGAKGGKGYFLAKD 48 (235)
T ss_dssp SHHHHHHHHHHTTCCCCCBCS--------------------------------CGGGCCSCEEEEECC----TTCEEESS
T ss_pred CHHHHHHHHHHcCCCCchhhh--------------------------------CHHHcCCCEEEEECCCCCCCCeEEEec
Confidence 899999999999999998321 345689999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC---CCCcEEEEEeccccceeeEEEEEcCCCCEEEecc--------------cccccccccc----
Q 000092 252 DDEVRALFKQVQGEV---PGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHS--------------RDCSVQRRHQ---- 310 (2267)
Q Consensus 252 ~eEL~~a~~~~~~e~---~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~--------------Rdcsvqrr~q---- 310 (2267)
.+++.+.++.+.... ...++++|+|++| .++.++.+.+.......+.. +.+..++.+.
T Consensus 49 ~~e~~~~~~~~~~~~~~~~~~~~iiee~i~G-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (235)
T d2r85a2 49 PEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDIT 127 (235)
T ss_dssp HHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCC
T ss_pred hHHHHHHHHHHHhhhhhCCCcchhHHhhcCC-eEEEEEEeecccccceEEEEeecCCcceeeEEEeccceeEecccCCCC
Confidence 999999999887533 3568999999988 57778877664333221111 1111112211
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHHHc-----CceeeeEEEEEEEccCCcEEEeeeCccCcCCcceeh
Q 000092 311 KIIEEGPITVAPLETVKKLEQAARRLAKCV-----NYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTE 376 (2267)
Q Consensus 311 KiieeaPa~~l~~e~~~eL~~~A~rla~aL-----Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqgehpvtE 376 (2267)
......|+..++.+..+++.+.+.++++++ |++|++++||++++ +|++||||+|||++|+.++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~G~~~ve~~~~~-dg~~~viEiNpR~~Gg~~~~~ 197 (235)
T d2r85a2 128 YTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGTNIFV 197 (235)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGGGGGT
T ss_pred cceeeccCcccchhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEEEcC-CCCEEEEEEeCCCCCCCccee
Confidence 112234555577888888888888888877 78999999999994 789999999999999876643
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=99.76 E-value=4.6e-19 Score=208.59 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=128.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccccc--------cceEEEEEEEECCeEEEEEEEeccccccccCCCCCC
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEGW--------ARTVVTGRARLGGIPVGIVAVETQTVMQVIPADPGQ 1929 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~~--------a~~vVtG~arl~G~pVgViA~e~~~~~~~~PAdpa~ 1929 (2267)
....+|++|+. |+|+|||+|+...+ +++||||+|+|+|+||+|+|+|+++.
T Consensus 58 gkltaReRI~~-----------LlD~gSf~E~~~l~~~~~~~~~~~~vV~G~g~i~G~~v~v~a~D~t~~---------- 116 (287)
T d1pixa2 58 GELTALQRIEK-----------LVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKL---------- 116 (287)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEETTEEEEEEEECTTTT----------
T ss_pred CCCCHHHHHHH-----------HcCCcchhhHHHHhhhccCCCCCCCceEEEeecccceEEEEEeccccc----------
Confidence 45788999997 89999999997655 57899999999999999999988766
Q ss_pred CCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHH---HhcCCCCEEE
Q 000092 1930 LDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN---LRTYKQPVFV 2006 (2267)
Q Consensus 1930 p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a---l~~~~vP~i~ 2006 (2267)
||++++.+++|+.|+++.|.++++|||+|+|++|+..+..++..+....+++++.. ++..++|+|+
T Consensus 117 -----------gGs~~~~~~~K~~r~~~lA~~~~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Is 185 (287)
T d1pixa2 117 -----------AGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIV 185 (287)
T ss_dssp -----------TTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEE
T ss_pred -----------cccchhhHHHHHHHHHHhhhhcCCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEE
Confidence 89999999999999999999999999999999998887766655555556666654 4557899999
Q ss_pred EEccCCcC-CchhHhhhccccCCccceeecccccEEEeeCccchhhh
Q 000092 2007 YIPMMAEL-RGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEI 2052 (2267)
Q Consensus 2007 vI~~~g~~-~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I 2052 (2267)
+|+ |++ .||||.+++ +++ +++++++.+++.+|.-.-.+
T Consensus 186 vv~--G~~~gGgAy~~~~----~~~--i~~~~~a~i~~~Gp~vv~~~ 224 (287)
T d1pixa2 186 GIY--GTNPAGGGYHSIS----PTV--IIAHEKANMAVGGAGIMGGM 224 (287)
T ss_dssp EEC--SEEETHHHHHHHS----SSE--EEEETTCEEESCCCTTCCSC
T ss_pred Eec--CCccccceecccc----cee--EEecCCeEEEEECHHHhccc
Confidence 999 554 467775443 466 88999999999999654433
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.3e-17 Score=194.40 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=123.6
Q ss_pred ccCCC----CCCChHHHhcccccCCCCcccccccCCCceecccc---------------------------ccceEEEEE
Q 000092 1853 EYLPE----NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------------------WARTVVTGR 1901 (2267)
Q Consensus 1853 ~~~P~----~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------------------~a~~vVtG~ 1901 (2267)
.++|. ....+|++|+. |||+|||.|+... .++++|||+
T Consensus 22 ~vC~~C~~h~~ltaReRi~~-----------L~D~gsf~Ei~~~~~~~d~l~~~d~~~y~~~~~~~~~~tg~~d~vv~g~ 90 (263)
T d2f9yb1 22 EVCPKCDHHMRMTARNRLHS-----------LLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMK 90 (263)
T ss_dssp TBCTTTCCBCCCCHHHHHHH-----------HSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEE
T ss_pred CCCcCCCCCCCcCHHHHHHH-----------HccCCceEEeCCCcccCCchhcccccccccchhhhccccCCCCceEEEE
Confidence 35565 66899999997 8999999998642 247999999
Q ss_pred EEECCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhh
Q 000092 1902 ARLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRD 1981 (2267)
Q Consensus 1902 arl~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~ 1981 (2267)
|+|+|+||.|+++|++++ ||++++.+++|+.|+++.|.+.++|+|+|.+++|. .
T Consensus 91 G~i~G~~v~v~a~Dftv~---------------------gGS~g~~~~~Ki~~a~e~A~~~~lPlI~~~~sgG~-----r 144 (263)
T d2f9yb1 91 GTLYGMPVVAAAFEFAFM---------------------GGSMGSVVGARFVRAVEQALEDNCPLICFSASGGA-----R 144 (263)
T ss_dssp CEETTEECBEEEECTTST---------------------TTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSB-----C
T ss_pred EEECCEEEEEEeeeehhh---------------------ccccccchhhHHhHHHHHHHHcCCCeEEEecCCCc-----c
Confidence 999999999999999877 99999999999999999999999999999999993 3
Q ss_pred hhhchHH--H---HHHHHHHHhcCCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 1982 LFEGILQ--A---GSTIVENLRTYKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 1982 e~~gilk--~---ga~iv~al~~~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
|+++... . ....+..+...++|+|+++. |.+.||.+..+.. ..|+ ++++++|.+++.||+
T Consensus 145 ~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~--g~~~GG~aa~~~~--~~d~--i~~~~~s~i~~aGP~ 209 (263)
T d2f9yb1 145 MQEALMSLMQMAKTSAALAKMQERGLPYISVLT--DPTMGGVSASFAM--LGDL--NIAEPKALIGFAGPR 209 (263)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--EEEEHHHHTTGGG--CCSE--EEECTTCBEESSCHH
T ss_pred cccccchhhcchhHHHHHHHHHhCCCceEEEec--CCcchHHHhhhhh--cCce--EeeecceeeeccCHH
Confidence 4444432 2 23334456678899999999 7888876543332 3566 889999999999995
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=99.64 E-value=1.7e-16 Score=151.54 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=67.1
Q ss_pred CCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEE
Q 000092 685 HDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARL 754 (2267)
Q Consensus 685 ~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l 754 (2267)
...+.|+|||||+|++|+|++||+|++||+|+++|+|||+++|+||.+|+|+++ +++|+.|++||+|++|
T Consensus 6 ~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 6 AGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp CCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred CCCCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence 345689999999999999999999999999999999999999999999999999 9999999999999987
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=99.64 E-value=8.8e-16 Score=177.57 Aligned_cols=147 Identities=21% Similarity=0.207 Sum_probs=118.3
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc---------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.. ..++++|+|+|+|+|+||.|+++|++++
T Consensus 36 GkltaRERI~~-----------LlD~gSF~E~g~~~~~~~~~~~~~~~~~~~dgvV~G~G~I~gr~v~v~a~Dftv~--- 101 (253)
T d1on3a1 36 GKQTARERLNN-----------LLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVM--- 101 (253)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HcCCCCccccccccccchhhhhhhcccccCCcEEEEEEEEeceechhhhchhhhh---
Confidence 35789999997 899999999953 2368999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhch--HHHHHHHHHHHhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGI--LQAGSTIVENLRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gi--lk~ga~iv~al~~~ 2000 (2267)
||++++..++|+.++++.|.+.++|||+|.|+.|. .|+++. +...++++.++...
T Consensus 102 ------------------GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sgG~-----r~~eg~~~l~~~~~~~~~~~~l 158 (253)
T d1on3a1 102 ------------------GGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGA-----RIQEGIDSLSGYGKMFFANVKL 158 (253)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSB-----CGGGTHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccceecccchhhhhHHHHhhcCCCeEEEEecCCC-----cccccceeccccceehHHHHHH
Confidence 99999999999999999999999999999999983 344443 33445555554443
Q ss_pred --CCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCccc
Q 000092 2001 --KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2001 --~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
.+|+|+++. |.+.||++...+. .|+ +++.++|.+++.||+-
T Consensus 159 s~~vP~i~vv~--Gp~~GG~a~~~~~---~d~--vi~~~~a~i~~aGP~v 201 (253)
T d1on3a1 159 SGVVPQIAIIA--GPCAGGASYSPAL---TDF--IIMTKKAHMFITGPQV 201 (253)
T ss_dssp TTTSCEEEEEE--EEEESGGGHHHHH---SSE--EEEETTCEEESSCHHH
T ss_pred hccceEEEEEe--cCcccceeeccch---hhh--eeccccceEEecCcch
Confidence 489999999 6666665544443 466 7888999999999943
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.60 E-value=1.5e-15 Score=176.27 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=116.0
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+... +++++|||+|+|+|+||.|+++|++++
T Consensus 35 GkltaReRi~~-----------L~D~gsF~E~~~~~~~~~~~~~~~~~~~~~d~vv~G~G~I~G~~v~v~a~Dftv~--- 100 (258)
T d1xnya1 35 GKLTARERIDL-----------LLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVF--- 100 (258)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------HcCCCCCccccchhcccccccccccccCCCCeeEEEEEEECCEEEEEEechhhhh---
Confidence 35789999997 8999999998532 357999999999999999999999877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhc--C
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRT--Y 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~--~ 2000 (2267)
||+|++..++|..|+++.|.+.++|||+|.|++|... .+....+..+++++..+.. .
T Consensus 101 ------------------gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~dsgGarm---~e~~~~~~~~~~~~~~~~~~s~ 159 (258)
T d1xnya1 101 ------------------GGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARI---QEGVASLGAYGEIFRRNTHASG 159 (258)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCG---GGTHHHHHHHHHHHHHHHHTTT
T ss_pred ------------------cCccchhhHHHHHHHHHHHHHcCCceEEEecCCCccc---CcccccccchhHHHHHHHHHcC
Confidence 9999999999999999999999999999999999432 2222333344555555444 3
Q ss_pred CCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2001 KQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2001 ~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
.+|+|+++. |.++|| +|....+ .+. +++.++|.+++.||.
T Consensus 160 ~vP~I~vv~--G~~~gG~a~~~~~~---~~v--im~~~~a~i~~aGP~ 200 (258)
T d1xnya1 160 VIPQISLVV--GPCAGGAVYSPAIT---DFT--VMVDQTSHMFITGPD 200 (258)
T ss_dssp TSCEEEEEC--SEEEGGGGHHHHHS---SEE--EEETTTCEEESSCHH
T ss_pred CCCEEEEEc--CCcChhHHHHHHhc---cch--hhcccceEEEecCHH
Confidence 499999999 665654 4433332 334 677899999999993
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.9e-15 Score=169.97 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=131.4
Q ss_pred CCHHHHHHhcCHHH--HHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecC
Q 000092 162 PPATSMAALGDKIG--SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASW 239 (2267)
Q Consensus 162 Ps~eam~~lgDK~~--~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~ 239 (2267)
++++++..|.||.. .+.+....++++|.+-... ..+..+..+.....+||+|+||..
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~---------------------~~~~~~~~~~~~~~~~PvVvKP~~ 59 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIE---------------------QTYYPNHREMLTLPTFPVVVKIGH 59 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCC---------------------CEEESSGGGGSSCCCSSEEEEESS
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceee---------------------cccccchhHHhhhcCCceEEecCC
Confidence 47899999999954 3444444444444322200 001111223444578999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEecccccccccccceEEEecCCC
Q 000092 240 GGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPIT 319 (2267)
Q Consensus 240 GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqrr~qKiieeaPa~ 319 (2267)
|+||+||.++++.+++..+++.+... ..++++|+|+++.+++.|.++++ .++....|...-..+........+..
T Consensus 60 g~~g~Gv~~v~~~~~l~~~~~~~~~~--~~~~~vqe~I~~~~dirv~vig~---~~~~~~~~~~~~~~~~n~~~~~~~~~ 134 (206)
T d1i7na2 60 AHSGMGKVKVENHYDFQDIASVVALT--QTYATAEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKTNTGSAMLEQI 134 (206)
T ss_dssp CSTTTTEEEECSHHHHHHHHHHHHHH--TCCEEEEECCCEEEEEEEEEETT---EEEEEEEESSCTTTSCSCCCSSEEEE
T ss_pred CCCCCCeEEEeecchhhhHHHHHhhc--cCeEEEEEeecccceEEEEEEec---ceeEEEeeccccccccccccCccccc
Confidence 99999999999999999999888765 45899999998778999998854 45554444333222211111111111
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCc---cCcCCcceehhhhcCCHHHHHHHHHc
Q 000092 320 VAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNP---RLQVEHPVTEWIAEINLPAAQVAVGM 392 (2267)
Q Consensus 320 ~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINp---RlqgehpvtE~vtGvDL~~~qL~iA~ 392 (2267)
... ++..+.+.+.++.++..|.+.|||+++ ++|++||||+|+ .+..++.........|++...++.+|
T Consensus 135 ~~~----~~~~~~~~~~~~~~~~~~~~gvD~~~~-~dG~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~~~l 205 (206)
T d1i7na2 135 AMS----DRYKLWVDACSEMFGGLDICAVKAVHG-KDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 205 (206)
T ss_dssp CCC----HHHHHHHHHHTTGGGCCSEEEEEEEEE-TTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCC----hHHHHHHHHHhhhccccceeeEEEEEc-CCCCEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 122 355667777778888889999999998 488999999996 44455555544445666666655543
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=6.5e-16 Score=148.00 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=65.3
Q ss_pred CCceecCCCceeE-------EEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEe
Q 000092 687 PSKLVAETPCKLL-------RYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLD 755 (2267)
Q Consensus 687 ~~~l~APmPG~vv-------~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~ 755 (2267)
++.|+|||+|++. +++|++||+|++||+|++||||||+++|+||.+|+|+.+ +++|+.|+.||+|++|+
T Consensus 4 g~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 4469999999995 688999999999999999999999999999999999999 99999999999999985
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=6.9e-15 Score=170.35 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=114.7
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceecccc---------------ccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLEG---------------WARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~~---------------~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.+. .++++|||+|+|+|+||.|+++|++++
T Consensus 36 GkltaReRi~~-----------L~D~gsF~E~~~l~~~~~~~~~~~~~~~~~d~vV~G~G~I~G~~v~v~a~Dft~~--- 101 (258)
T d2a7sa1 36 GKLTARERIYA-----------LLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVF--- 101 (258)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEESTTCCCCCCSTTCTTCCCTTTTEEEEEEESSSSEEEEEEECTTSG---
T ss_pred CCCCHHHHHHH-----------HcCCCCcEEehhcccccchhhhccccccccccceeEEEEeccceEEEecccceEe---
Confidence 45789999997 8999999998542 257999999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchH--HHHHHHHHH--Hh
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGIL--QAGSTIVEN--LR 1998 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gil--k~ga~iv~a--l~ 1998 (2267)
||++++..++|+.|+++.|.+.++|+|+|.|++|. .|++++. ...+++... ..
T Consensus 102 ------------------gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~dsgGa-----r~~eg~~~~~~~~~~~~~~~~~ 158 (258)
T d2a7sa1 102 ------------------GGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGA-----RIQEGVVSLGLYSRIFRNNILA 158 (258)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSB-----CGGGCTHHHHHHHHHHHHHHHH
T ss_pred ------------------CCccchhhhhHHHHHHHHHHhcCCceEEEeccCCc-----ccccccccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999993 3333332 233344333 34
Q ss_pred cCCCCEEEEEccCCcCCch-hHhhhccccCCccceeecccccEEEeeCccc
Q 000092 1999 TYKQPVFVYIPMMAELRGG-AWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 1999 ~~~vP~i~vI~~~g~~~GG-a~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
...+|+|++|+ |++.|| +|....+ .+. +.+.++|.+++.||+-
T Consensus 159 ~~~vP~I~~v~--G~~~gG~a~~~~~~---d~~--vm~~~~a~i~~aGP~v 202 (258)
T d2a7sa1 159 SGVIPQISLIM--GAAAGGHVYSPALT---DFV--IMVDQTSQMFITGPDV 202 (258)
T ss_dssp TTTSCEEEEEC--SCCBSGGGHHHHHS---SEE--EEEBTTBBCBSSCHHH
T ss_pred cCCCCEEEEEe--cCcccHHHHHHHhc---cce--EeecCceEEEccChhH
Confidence 46699999999 665654 5443332 233 5568999999999943
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=5.1e-15 Score=171.05 Aligned_cols=149 Identities=19% Similarity=0.151 Sum_probs=114.4
Q ss_pred CCCChHHHhcccccCCCCcccccccCCCceeccc---------------cccceEEEEEEEECCeEEEEEEEeccccccc
Q 000092 1858 NSCDPRAAICGFLDNNGKWIGGIFDKDSFVETLE---------------GWARTVVTGRARLGGIPVGIVAVETQTVMQV 1922 (2267)
Q Consensus 1858 ~~yD~R~~i~~~~~~~~~~~~gl~D~gSF~E~~~---------------~~a~~vVtG~arl~G~pVgViA~e~~~~~~~ 1922 (2267)
....+|++|+. |||+|||.|+.. .+++++|||+|+|+|+||.|+++|++++
T Consensus 33 GkltaReRi~~-----------L~D~gSF~E~~~~~~~~~~~~~~~~~~~~~dgvV~G~G~I~G~~v~v~a~D~t~~--- 98 (251)
T d1vrga1 33 GKLTAWERLEL-----------LLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVM--- 98 (251)
T ss_dssp TCCCHHHHHHH-----------HSCTTCCEEECTTCCCCCCGGGGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTG---
T ss_pred CCCCHHHHHHH-----------HcCCCCcccccchhccccchhhhccccccccceEEEEEEEccEEEEEeeehhhhh---
Confidence 45789999997 899999999852 2358999999999999999999998877
Q ss_pred cCCCCCCCCccccccccCCCccCHHHHHHHHHHHHHhcccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHH--HhcC
Q 000092 1923 IPADPGQLDSHERVVPQAGQVWFPDSATKTAQALMDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVEN--LRTY 2000 (2267)
Q Consensus 1923 ~PAdpa~p~s~~~~~~~~gG~~~p~sa~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~a--l~~~ 2000 (2267)
||++++..++|++|+++.|.++++|+|+|.|++|... .+....+...+++..+ ....
T Consensus 99 ------------------gGs~g~~~~~K~~r~~e~A~~~~~P~I~~~dsgG~r~---~e~~~~l~~~~~~~~~~~~~s~ 157 (251)
T d1vrga1 99 ------------------GGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARI---QEGVDALAGYGEIFLRNTLASG 157 (251)
T ss_dssp ------------------GGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCG---GGTHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------hcccchHHHHHHHHHHHHHHHcCCCEEEEEcCCCccc---cccccccccchHHHHHHHHHCC
Confidence 8999999999999999999999999999999988432 1222223334455443 3345
Q ss_pred CCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEeeCcc
Q 000092 2001 KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPE 2047 (2267)
Q Consensus 2001 ~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl~pe 2047 (2267)
.+|+|++|. |++.||.....+. .|+. +++.++|.+++.+|.
T Consensus 158 ~iP~I~vv~--G~~~gG~a~~~~~---~d~~-im~~~~a~i~~aGp~ 198 (251)
T d1vrga1 158 VVPQITVIA--GPCAGGAVYSPAL---TDFI-VMVDQTARMFITGPN 198 (251)
T ss_dssp TSCEEEEEE--EEEBGGGGHHHHH---SSEE-EEETTTCBCBSSCHH
T ss_pred CCCEEEEEc--cCccccceehhhh---CceE-EEEccceeEEecCch
Confidence 699999999 6666654444433 2431 556888999888883
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.49 E-value=1.5e-14 Score=138.60 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=67.1
Q ss_pred eecC---CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCC
Q 000092 690 LVAE---TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPS 760 (2267)
Q Consensus 690 l~AP---mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~ 760 (2267)
++.| +.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++ +++|+.|+.|++|+.|++.+++
T Consensus 4 i~~P~~g~~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~a 78 (79)
T d1iyua_ 4 IRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78 (79)
T ss_dssp EECCCCSSEEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCSC
T ss_pred EECCCCCCCEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCccC
Confidence 5556 789999999999999999999999999999999999999999998 9999999999999999998765
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=2.1e-13 Score=130.78 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=61.7
Q ss_pred CceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 695 PCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 695 PG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|..|++|+.|+.++.
T Consensus 14 ~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg~ 79 (80)
T d1qjoa_ 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCCC
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCcC
Confidence 35999999999999999999999999999999999999999998 999999999999999997654
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.7e-13 Score=159.92 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=152.0
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHhhcCCCCCCCCccccccccceecCCCCCCcCcccccccCCCCCceeEEEEE
Q 000092 1514 QKRLLARRSNTTYCYDFPLAFETALEQSWASQFPNMRPKDKALLKVTELKFADDSGTWGTPLVLVERSPGLNNIGMVAWC 1593 (2267)
Q Consensus 1514 ~kr~~a~~~~t~y~yd~~~~~~~al~~~w~~~~~~~~~~~~~~~~~~el~~~~~~g~~~~~l~~~~r~~g~n~~gmv~~~ 1593 (2267)
+|++.||+.+.+|.-||.+.+ .. +|.|| +| +|..|.+.+ +++++
T Consensus 59 ~~vq~aRhp~Rp~~~d~i~~i----------------~~-----~f~eL-----~G---------dr~~~dD~a-ii~G~ 102 (316)
T d2f9ya1 59 QIAQLARHPQRPYTLDYVRLA----------------FD-----EFDEL-----AG---------DRAYADDKA-IVGGI 102 (316)
T ss_dssp HHHHHHTCTTCCCHHHHHHHH----------------CE-----EEEEC-----CC---------CSSSCCCTT-EEEEE
T ss_pred HhHHhhcCCCCccHHHHHhhc----------------cc-----chhhc-----cc---------ccccCcCcc-cccee
Confidence 488999999999999999877 12 67787 67 677777666 99999
Q ss_pred EEecCccccCCcEEEEEEecc--------cccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCchhhhhhhcc
Q 000092 1594 MEMFTPEFPSGRTILIVANDV--------TFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARIGVAEEVKACFE 1665 (2267)
Q Consensus 1594 ~~~~tp~~~~Gr~vvvianD~--------T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi~~~e~~~~l~~ 1665 (2267)
.++ +|++|+|++++- .+++|+..|...+|..|++++|.+.++|+|+|.|+.||-+|...|-...-
T Consensus 103 a~~------~g~~V~vIg~~kg~~~~~~~~~n~G~~~p~~~rKa~r~~~~a~~~~~Pii~~vDtpG~~~g~~~E~~g~~- 175 (316)
T d2f9ya1 103 ARL------DGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQS- 175 (316)
T ss_dssp EEE------TTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCSHHHHHTTHH-
T ss_pred eee------cCCeEEEEEeecCCCcccccccccccccHHHHHHHHHHHHHHHHcCcceEEEEecCcccCCcccccccHH-
Confidence 887 999999999987 78899999999999999999999999999999999999998554332110
Q ss_pred ccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccccccccccCceE
Q 000092 1666 IGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAGAYSRAYKETFT 1745 (2267)
Q Consensus 1666 v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag~~s~a~~~ipt 1745 (2267)
... ..|+.. +|. ..+|+
T Consensus 176 --------------------~~~----------------------------------a~~~~~-------~~~--~~vP~ 192 (316)
T d2f9ya1 176 --------------------EAI----------------------------------ARNLRE-------MSR--LGVPV 192 (316)
T ss_dssp --------------------HHH----------------------------------HHHHHH-------HHT--CSSCE
T ss_pred --------------------HHH----------------------------------HHHHHH-------HHh--CCCce
Confidence 000 111111 111 25899
Q ss_pred EEEEcCcccchhhhhhccCCeEEEecCCcceecchHHHHHhhcccccccc---ccCC-ccccccccCceEEEec
Q 000092 1746 LTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSH---MQLG-GPKIMATNGVVHLTVS 1815 (2267)
Q Consensus 1746 is~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~---~~lG-G~~i~~~nGv~d~~v~ 1815 (2267)
||+|+|.+.||||+....+|++.|.+++.+.+-+|..-...+.++.-..+ +.++ .++=+.+.|++|-+++
T Consensus 193 i~vv~g~g~~gga~a~~~~d~v~m~~~a~~svispEg~AsILwkd~~~a~eaAealklta~dL~~lgiIDeII~ 266 (316)
T d2f9ya1 193 VCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIP 266 (316)
T ss_dssp EEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHTTTSCSCCCC
T ss_pred EEEEEhhhhchhhhhhhhhhHHHHHhhhHHhhccchhhhhHhhccchhhcchHHHHhhhhHHHHHcCchhhccc
Confidence 99999999999999999999999999999999999998888887541111 1111 1222457899998884
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=99.31 E-value=6.8e-13 Score=126.75 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=61.1
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|++|++|+.|+..
T Consensus 14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~ 78 (79)
T d1ghja_ 14 ADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp SCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred cEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence 459999999999999999999999999999999999999999888 9999999999999999764
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1e-12 Score=127.64 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=63.3
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDPS 760 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~~ 760 (2267)
.-|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++ +++|+.|+.|++|+.|+.++..
T Consensus 17 ~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~~ 84 (87)
T d1k8ma_ 17 REVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALK 84 (87)
T ss_dssp CCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCCT
T ss_pred eeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcCCcc
Confidence 359999999999999999999999999999999999999999988 9999999999999999987654
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.30 E-value=2.1e-13 Score=130.60 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=60.9
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.-|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++ +++|+.|+.|++|+.|+.+
T Consensus 14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~ 78 (80)
T d1laba_ 14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 78 (80)
T ss_dssp CSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred eeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999987 9999999999999998754
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=99.23 E-value=1.2e-12 Score=125.85 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecCCC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLDDP 759 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~~~ 759 (2267)
.+|+|++|+|++||.|++||+|+++|+|||++++.||.+|+|+++ +++|+.|..|++|+.|+.++.
T Consensus 14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g~ 80 (81)
T d1gjxa_ 14 ENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT 80 (81)
T ss_dssp SSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSCC
T ss_pred cEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecccC
Confidence 468999999999999999999999999999999999999999988 999999999999999987543
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=7.4e-13 Score=126.68 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=60.8
Q ss_pred CCceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 694 TPCKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 694 mPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
..|+|++|+|++||+|++||+|++||+|||.++|.||.+|+|.++ +++|+.|..|++|+.|+..
T Consensus 15 ~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~eg 79 (80)
T d1pmra_ 15 ADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREG 79 (80)
T ss_dssp SCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCCC
T ss_pred cEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeCC
Confidence 459999999999999999999999999999999999999999987 9999999999999999743
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.5e-11 Score=120.07 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=59.4
Q ss_pred ceeEEEEccCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe-eCCCC-ccCCCCEEEEEecCC
Q 000092 696 CKLLRYLVSDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK-MAEGQ-AMQAGELIARLDLDD 758 (2267)
Q Consensus 696 G~vv~~~V~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i-~~~G~-~v~~G~~La~l~~~~ 758 (2267)
|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++ +++|+ .|..|++|+.|..++
T Consensus 20 g~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~~ 84 (102)
T d1y8ob1 20 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (102)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred EEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999888 99997 599999999996543
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.10 E-value=3.7e-10 Score=131.17 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=129.1
Q ss_pred ccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCCC
Q 000092 1575 LVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGARI 1654 (2267)
Q Consensus 1575 l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGARi 1654 (2267)
|.|+....|. +||+++.++ +|++|.|+|||..+++|++++..++|..+.+++|.+.++|+|+|.|+.|+.+
T Consensus 49 f~E~~~~~g~---~~itg~ari------~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~~iPlv~l~dtpGf~~ 119 (271)
T d2a7sa2 49 FLEIQAGYAQ---NIVVGFGRI------DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLP 119 (271)
T ss_dssp CEEESTTSCT---TEEEEEEES------SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCC
T ss_pred chhhcccccc---ceeEEEEEE------CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHhCCceEEeechhhhhh
Confidence 4444443443 489999987 9999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCcccccccccccccc
Q 000092 1655 GVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIAG 1734 (2267)
Q Consensus 1655 ~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~iag 1734 (2267)
|...|-...+ . . -+++ +.
T Consensus 120 G~~~E~~g~~--~--------~-----------ga~~----------------------------------~~------- 137 (271)
T d2a7sa2 120 GTDQEYNGII--R--------R-----------GAKL----------------------------------LY------- 137 (271)
T ss_dssp CHHHHHHCHH--H--------H-----------HHHH----------------------------------HH-------
T ss_pred hccHHHhhHH--H--------H-----------HHHH----------------------------------HH-------
Confidence 9432221110 0 0 0000 00
Q ss_pred cccccccCceEEEEEcCcccchhhhhhc----cCCeEEEecCCcceecchHHHHHhh-cccccccc--------------
Q 000092 1735 AYSRAYKETFTLTYVTGRTVGIGAYLAR----LGMRCIQRLDQPIILTGFSALNKLL-GREVYSSH-------------- 1795 (2267)
Q Consensus 1735 ~~s~a~~~iptis~vtg~~~G~gAyl~~----lgd~~I~~~~a~i~ltGp~al~~~l-G~evy~s~-------------- 1795 (2267)
++ +-..+|.|++++|++.|+|.|.-. -+|++++-+++.+.+-||+....++ .++.....
T Consensus 138 a~--a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvMgpegaa~v~~~~~l~~~~~~~~~~~~~~~~~~ 215 (271)
T d2a7sa2 138 AY--GEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQ 215 (271)
T ss_dssp HH--HHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTTTTTTGGGTSSCCTTSSTTHHH
T ss_pred HH--HhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeecCHHHHHHHHHHHhhhhhhhcccchHHHHHHHH
Confidence 00 112479999999999996544221 2599999999999999997655543 33321110
Q ss_pred ----ccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCCC
Q 000092 1796 ----MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPH 1834 (2267)
Q Consensus 1796 ----~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~ 1834 (2267)
++...+-.....|.+|-+++ -.+--..+.++|..+...
T Consensus 216 ~e~~e~~~~p~~aa~~g~iD~VId-P~dTR~~L~~~L~~~~~k 257 (271)
T d2a7sa2 216 QEYEDTLVNPYVAAERGYVDAVIP-PSHTRGYIGTALRLLERK 257 (271)
T ss_dssp HHHHTTTSBSHHHHHHTSSSEECC-GGGHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCHHHHHHcCCCCeeEC-HHHHHHHHHHHHHHHHcc
Confidence 12233434456799999884 566666677778776543
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=2.5e-10 Score=132.11 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=136.9
Q ss_pred cccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Q 000092 1574 PLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGAR 1653 (2267)
Q Consensus 1574 ~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGAR 1653 (2267)
.+.|+....|.+ ||+|+.++ +|++|.|+||+..+++|++.+..++|..+.+++|.+.+||+|+|.|+.|+.
T Consensus 45 ~~~E~~~~~~~~---~v~g~~r~------~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~~iPli~l~DtpGf~ 115 (264)
T d1vrga2 45 EFFEVQPYFAKN---IVIGFARI------QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYL 115 (264)
T ss_dssp CCEEESTTSSTT---EEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBC
T ss_pred eeeeecCCCCCC---eEEEEEEe------cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHhCCceEEEeeccccc
Confidence 477777766654 88999987 999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccccc
Q 000092 1654 IGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIA 1733 (2267)
Q Consensus 1654 i~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ia 1733 (2267)
+|...|-...++ . -+++ +
T Consensus 116 ~G~~~E~~g~~~----------~-----------ga~~----------------------------------------~- 133 (264)
T d1vrga2 116 PGVAQEHGGIIR----------H-----------GAKL----------------------------------------L- 133 (264)
T ss_dssp CCHHHHHTTHHH----------H-----------HHHH----------------------------------------H-
T ss_pred ccHHHHHHhHHH----------H-----------HHHH----------------------------------------H-
Confidence 994432211100 0 0000 0
Q ss_pred ccccccccCceEEEEEcCcccchhhhhhc----cCCeEEEecCCcceecchHHHHHhhccccccc---------------
Q 000092 1734 GAYSRAYKETFTLTYVTGRTVGIGAYLAR----LGMRCIQRLDQPIILTGFSALNKLLGREVYSS--------------- 1794 (2267)
Q Consensus 1734 g~~s~a~~~iptis~vtg~~~G~gAyl~~----lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s--------------- 1794 (2267)
++-+-..+|.|++++|++.|+|+|... -+|++++-+++.+.+-||+....++-+.-...
T Consensus 134 --~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~pe~aa~v~~~~~l~~~~~~~~~~~~~~~~~ 211 (264)
T d1vrga2 134 --YAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEY 211 (264)
T ss_dssp --HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHH
T ss_pred --HHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCHHHhhhhhhhhhhhhhhCcHHHHHHHHHHH
Confidence 000112479999999999987654432 38999999999999999987666543211000
Q ss_pred cccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCCCC
Q 000092 1795 HMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHI 1835 (2267)
Q Consensus 1795 ~~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~~ 1835 (2267)
.++...+-.....|.+|-+. |-.+--..|.++|+.+....
T Consensus 212 ~e~~~~~~~aa~~g~iD~VI-dP~dTR~~L~~~Le~l~~k~ 251 (264)
T d1vrga2 212 KQQFANPYIAASRGYVDMVI-DPRETRKYIMRALEVCETKV 251 (264)
T ss_dssp HHHTSSHHHHHHTTSSSEEC-CGGGHHHHHHHHHHHHTTCC
T ss_pred HHHhcCHHHHHHcCCCCeeE-CHHHHHHHHHHHHHHHhccc
Confidence 13334455556789999999 46677777777888776543
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.07 E-value=3e-10 Score=131.27 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=131.9
Q ss_pred cccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Q 000092 1574 PLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGAR 1653 (2267)
Q Consensus 1574 ~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGAR 1653 (2267)
.+.|+....|. +||+++.++ +|++|.|+|||+++.+|++++..++|..+.+++|.+.+||+|+|.|+.|+.
T Consensus 43 ~f~E~~~~~g~---~vitg~ari------~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~~iPli~l~d~pGf~ 113 (263)
T d1xnya2 43 EFFETQPLFAP---NILTGFGRV------EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFL 113 (263)
T ss_dssp CCEEESTTSCT---TEEEEEEEE------TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBC
T ss_pred EEEeeccccCC---cEEeeeeee------ccceEEEEecccceecCCcchhhHHHHHHHHHHHHHhCCceEEeecccccc
Confidence 46666666664 488999987 999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccccc
Q 000092 1654 IGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIA 1733 (2267)
Q Consensus 1654 i~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ia 1733 (2267)
+|...|-...++ ..+++ +.
T Consensus 114 ~G~~~E~~g~~~---------------------~ga~~----------------------------------~~------ 132 (263)
T d1xnya2 114 PGVDQEHDGIIR---------------------RGAKL----------------------------------IF------ 132 (263)
T ss_dssp CCHHHHHTTHHH---------------------HHHHH----------------------------------HH------
T ss_pred cchhHHHHhHHH---------------------HHHHH----------------------------------HH------
Confidence 994432211100 00000 00
Q ss_pred ccccccccCceEEEEEcCcccchhhhhhc----cCCeEEEecCCcceecchHHHHHhhcccccccc--------------
Q 000092 1734 GAYSRAYKETFTLTYVTGRTVGIGAYLAR----LGMRCIQRLDQPIILTGFSALNKLLGREVYSSH-------------- 1795 (2267)
Q Consensus 1734 g~~s~a~~~iptis~vtg~~~G~gAyl~~----lgd~~I~~~~a~i~ltGp~al~~~lG~evy~s~-------------- 1795 (2267)
+-+-..+|.|+||++++.|+|.|... -+|++++-+++.+.+-||+...+++-++--...
T Consensus 133 ---a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~ 209 (263)
T d1xnya2 133 ---AYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQE 209 (263)
T ss_dssp ---HHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHH
T ss_pred ---HHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 00012479999999999986544322 258999999999999999877665533211000
Q ss_pred --ccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCC
Q 000092 1796 --MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1796 --~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
+++..+-.....|.+|-+.+ -.+--..|.++|..+..
T Consensus 210 ~~~~~~~p~~aA~~g~iD~VId-P~dTR~~L~~~L~~l~~ 248 (263)
T d1xnya2 210 YEDALLNPYTAAERGYVDAVIM-PSDTRRHIVRGLRQLRT 248 (263)
T ss_dssp HHHHHSSSHHHHHHTSSSEECC-GGGHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHcccCCcccC-HHHHHHHHHHHHHHHhc
Confidence 12344545557899999884 55556666667766644
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=4.3e-09 Score=123.81 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=109.9
Q ss_pred ccc-CCCceeccccccc---eEEEEEEEE------CCeEEEEEEEeccccccccCCCCCCCCccccccccCCCccCHHHH
Q 000092 1880 IFD-KDSFVETLEGWAR---TVVTGRARL------GGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSA 1949 (2267)
Q Consensus 1880 l~D-~gSF~E~~~~~a~---~vVtG~arl------~G~pVgViA~e~~~~~~~~PAdpa~p~s~~~~~~~~gG~~~p~sa 1949 (2267)
++| .++|.|.....|. ++|+|.+++ +||+|.|+|+|+++. +|++++...
T Consensus 62 ~ld~~~~l~e~~r~~G~n~~gmV~g~~~i~t~eyp~GR~vvvianD~T~~---------------------~GS~g~~e~ 120 (333)
T d1uyra1 62 IEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFK---------------------IGSFGPQED 120 (333)
T ss_dssp EECTTSCEEEECCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTTSG---------------------GGCBCHHHH
T ss_pred eecCCCceeeccccCCCCCCCeEeEEEEEcCCcCCCCcEEEEEEECCcee---------------------cCccCHHHH
Confidence 444 6689999877664 899999999 799999999988766 899999999
Q ss_pred HHHHHHHHHhcccCCcEEEEecCCCCCCchhhhh----------------------------------------------
Q 000092 1950 TKTAQALMDFNREELPLFILANWRGFSGGQRDLF---------------------------------------------- 1983 (2267)
Q Consensus 1950 ~K~arai~~a~~~~lPLv~l~d~~Gf~~G~~~e~---------------------------------------------- 1983 (2267)
.|..++.+.|.+.++|+|.|+++.|.-.|..++-
T Consensus 121 ~k~~~a~elA~~~~iP~I~l~~~sGARi~~~~~~~~~~~v~~~~~~~p~~G~~ylyl~~~~~~~~~~~~~~~~v~~~~~~ 200 (333)
T d1uyra1 121 EFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTV 200 (333)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCcCcccccccccccccccCCCCCcccCcceeecCHHHHHhhhhcccccceeeeeec
Confidence 9999999999999999999999999766543221
Q ss_pred ------------------hch--HHHHHHHHHHHhcC--CCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEE
Q 000092 1984 ------------------EGI--LQAGSTIVENLRTY--KQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKG 2041 (2267)
Q Consensus 1984 ------------------~gi--lk~ga~iv~al~~~--~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~ 2041 (2267)
.|+ |+..+.|..+++.+ .+|+|++++ +.+.+||||.+.-+ |+ +++.++|.+
T Consensus 201 ~~ge~~~~i~~i~G~~~g~GVe~L~g~g~ia~~~s~a~~~iptis~v~-G~~vG~gAyl~~L~----d~--vIm~~~s~i 273 (333)
T d1uyra1 201 INGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVT-CRSVGIGAYLVRLG----QR--AIQVEGQPI 273 (333)
T ss_dssp ETTEEEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHHHSCEEEEES-SCEETHHHHHHHHT----CC--EEEETTCCE
T ss_pred cCCceeeeeccccccccCCCcchhHHHHHHHHHHHHhcCCCCEEEEEe-CCccccceeecccc----cE--EEEeCCceE
Confidence 022 33445555555544 499999999 44444577776654 66 888899999
Q ss_pred EeeCccc
Q 000092 2042 NVLEPEG 2048 (2267)
Q Consensus 2042 gvl~peg 2048 (2267)
.+.||..
T Consensus 274 ~ltGp~~ 280 (333)
T d1uyra1 274 ILTGAPA 280 (333)
T ss_dssp ESSCHHH
T ss_pred EeeCHHH
Confidence 9999943
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=98.83 E-value=7.4e-09 Score=119.57 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=130.3
Q ss_pred cccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEecccccCCCcchHHHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Q 000092 1574 PLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFKAGSFGPREDAFFLAVTDLACAKKLPLIYLAANSGAR 1653 (2267)
Q Consensus 1574 ~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~~GS~g~~~~~k~~ra~elA~~~~iP~I~l~~ssGAR 1653 (2267)
.|.|+....|. +||+|+.++ +|++|.|+|||..+.+|++.+...+|..+.+++|.+.+||+|+|.|+.|..
T Consensus 45 ~f~E~~~~~g~---~~vtg~ari------~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~ 115 (264)
T d1on3a2 45 DYLEVKAGYAT---NLVTAFARV------NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFL 115 (264)
T ss_dssp CEEEESTTSST---TEEEEEEEE------TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBC
T ss_pred eeeeecCCCcC---CEEEEEEEE------ecceEEEEeccchhcccccChHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 45555555553 489999988 999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeecccccCccccccccccccc
Q 000092 1654 IGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKEDGLGVENLTGSGAIA 1733 (2267)
Q Consensus 1654 i~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~g~gve~l~~sG~ia 1733 (2267)
+|...|-...++ ..+++ +.
T Consensus 116 ~G~~~E~~g~i~---------------------~ga~~----------------------------------~~------ 134 (264)
T d1on3a2 116 PGVQQEYGGIIR---------------------HGAKM----------------------------------LY------ 134 (264)
T ss_dssp CCHHHHHTTHHH---------------------HHHHH----------------------------------HH------
T ss_pred ccHHHHHHHHHH---------------------HHHHH----------------------------------HH------
Confidence 984322211100 00000 00
Q ss_pred ccccccccCceEEEEEcCcccchhhhhhc----cCCeEEEecCCcceecchHHHHHhhc-ccccccc-------------
Q 000092 1734 GAYSRAYKETFTLTYVTGRTVGIGAYLAR----LGMRCIQRLDQPIILTGFSALNKLLG-REVYSSH------------- 1795 (2267)
Q Consensus 1734 g~~s~a~~~iptis~vtg~~~G~gAyl~~----lgd~~I~~~~a~i~ltGp~al~~~lG-~evy~s~------------- 1795 (2267)
+++ -..+|.||++++++.|+|+|... -.|++++-+++.+.+.||+..-+++- ++.-...
T Consensus 135 -a~a--~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~ 211 (264)
T d1on3a2 135 -AYS--EATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEY 211 (264)
T ss_dssp -HHH--HCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHH
T ss_pred -HHH--cCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Confidence 011 12479999999999997655432 15789999999999999976655432 2221110
Q ss_pred -ccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCC
Q 000092 1796 -MQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPP 1833 (2267)
Q Consensus 1796 -~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~ 1833 (2267)
+..+.+-..+..|.+|-+. |-.+--..|..+|..+..
T Consensus 212 ~~~~~~p~~aA~~g~iD~VI-dP~eTR~~L~~aLe~~~~ 249 (264)
T d1on3a2 212 QNAFNTPYVAAARGQVDDVI-DPADTRRKIASALEMYAT 249 (264)
T ss_dssp HHHHSSHHHHHHTTSSSEEC-CGGGHHHHHHHHHHHGGG
T ss_pred HHHhcCHHHHHHcCCCCeeE-CHHHHHHHHHHHHHHHhc
Confidence 1123333334679999988 466666777777877654
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.83 E-value=5.5e-09 Score=122.53 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=126.8
Q ss_pred cccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEeccccc--------------CCCcchHHHHHHHHHHHHHHHc
Q 000092 1574 PLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK--------------AGSFGPREDAFFLAVTDLACAK 1639 (2267)
Q Consensus 1574 ~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~--------------~GS~g~~~~~k~~ra~elA~~~ 1639 (2267)
.|.|+....|. +||+|+.++ +|++|.|+|||.++. +|++.+..++|..|.+++|.+.
T Consensus 47 ~f~E~~~~~g~---~~vtg~ari------~G~~vgviAn~~~~~~~~~~~~a~~~~~~~G~l~~~~a~K~~rfi~lc~~~ 117 (299)
T d1pixa3 47 ELHEYKKGYGP---EMVTGLAKV------NGLLVGVVANVQGLLMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARD 117 (299)
T ss_dssp BCEESSTTSST---TEEEEEEEE------TTEEEEEEEECCSEETTCCTTSCTTCCEETTEECHHHHHHHHHHHHHHHHT
T ss_pred EeEEeccccCC---ceEEEEEEE------CCeEEEEEeecCccccccccccccCCcCCCCccCHHHHHHHHHHHHHHHHc
Confidence 57777666664 489999987 999999999999886 9999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhccccccCCCCCCCCccccccChhhHHhhccceeeeccccccCceeeEEEeeccccc
Q 000092 1640 KLPLIYLAANSGARIGVAEEVKACFEIGWTDELNPDRGFNYVYLTPEDYARIGSSVIAHEMKLESGETRWVVDSIVGKED 1719 (2267)
Q Consensus 1640 ~iP~I~l~~ssGARi~~~e~~~~l~~v~w~d~~~~~~g~~~ly~~~~~~~~l~~~~~~~~~~~~~ge~~~~i~~iiG~~~ 1719 (2267)
++|+|+|.|+.|+.+|...|-...++ ..+++
T Consensus 118 ~iPlv~l~D~pGf~~g~~~E~~g~~r---------------------~ga~~---------------------------- 148 (299)
T d1pixa3 118 RLPIVWIQDTTGIDVGNDAEKAELLG---------------------LGQSL---------------------------- 148 (299)
T ss_dssp TCCEEEEECCCEECCSHHHHHTTHHH---------------------HHHHH----------------------------
T ss_pred CCeEEEEEeCCCcccchHHHhhhHHH---------------------HHHHH----------------------------
Confidence 99999999999999984433211100 00010
Q ss_pred CcccccccccccccccccccccCceEEEEEcCcccchhhhhhc---c-CCeE--EEecCCcceecchHH-HHHhhccccc
Q 000092 1720 GLGVENLTGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLAR---L-GMRC--IQRLDQPIILTGFSA-LNKLLGREVY 1792 (2267)
Q Consensus 1720 g~gve~l~~sG~iag~~s~a~~~iptis~vtg~~~G~gAyl~~---l-gd~~--I~~~~a~i~ltGp~a-l~~~lG~evy 1792 (2267)
+. +++ -..+|.||+++|++.|+|+|... + .+++ +..+.+.+.+-|+.. ++-+..++..
T Consensus 149 ------~~-------a~~--~~~VP~isvi~r~~~G~a~~am~g~~~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~ 213 (299)
T d1pixa3 149 ------IY-------SIQ--TSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRLA 213 (299)
T ss_dssp ------HH-------HHH--TCCCCEEEEECSEEETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHH
T ss_pred ------HH-------HHH--hhcceeEEEEecccccccccccccCccCcccceecCCCccccccccchhhheeehhhhhh
Confidence 00 000 12379999999999997765421 1 2444 455777788887754 3333222210
Q ss_pred cc--------------------cccCCccccccccCceEEEecCcHHHHHHHHHHHhcCCCCCCC
Q 000092 1793 SS--------------------HMQLGGPKIMATNGVVHLTVSDDLEGISAILKWLSYVPPHIGG 1837 (2267)
Q Consensus 1793 ~s--------------------~~~lGG~~i~~~nGv~d~~v~dd~e~~~~i~~~LsylP~~~~~ 1837 (2267)
.. -..-+++-..+..|.+|-+.+ -.+--..|..||..+..+...
T Consensus 214 ~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IID-P~dTR~~L~~~Le~~~~~~~~ 277 (299)
T d1pixa3 214 KDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVD-MNKIRGYVEAFTEAAYQNPES 277 (299)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECC-TTTHHHHHHHHHHHHTTSCSC
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeEC-HHHHHHHHHHHHHHHHhCccc
Confidence 00 011245555567899999884 566666677777766554433
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=6.5e-08 Score=97.82 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=85.3
Q ss_pred cEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHHHHH
Q 000092 49 HSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAE 128 (2267)
Q Consensus 49 kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~iA~ 128 (2267)
.||+|+|+|+.|..++.+++++||+++ +. |.+++++..+.||+++.. +|.|.+.+.+++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~-----------v~--d~~~~~PA~~va~~~i~~-------~~~d~~~l~~~~~ 71 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVI-----------AV--DRYADAPAMHVAHRSHVI-------NMLDGDALRRVVE 71 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEE-----------EE--ESSTTCGGGGGSSEEEEC-------CTTCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEE-----------EE--cCCCCCchhhcCCeEEEC-------CCCCHHHHHHHHH
Confidence 589999999999999999999999986 44 667899999999999987 6788999999999
Q ss_pred HcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHh
Q 000092 129 MTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAAL 170 (2267)
Q Consensus 129 ~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~l 170 (2267)
++++|.|. |.|..-+.+..+.+++.|+.+. |++++++.+
T Consensus 72 ~~~~DviT--~E~EnI~~~~L~~le~~g~~v~-Ps~~al~it 110 (111)
T d1kjqa2 72 LEKPHYIV--PEIEAIATDMLIQLEEEGLNVV-PCARATKLT 110 (111)
T ss_dssp HHCCSEEE--ECSSCSCHHHHHHHHHTTCEES-SCHHHHHHH
T ss_pred hhCCceEE--EEecCcCHHHHHHHHHCCCeEC-CCHHHHHhh
Confidence 99999998 4455555556688889998875 999999876
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=1.3e-06 Score=96.09 Aligned_cols=161 Identities=12% Similarity=0.022 Sum_probs=103.6
Q ss_pred cCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEeccc--cceeeEEEEEcCCC
Q 000092 216 VYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ--SRHLEVQLLCDQYG 293 (2267)
Q Consensus 216 V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL~~a~~~~~~e~~~~~I~VEeyI~g--~rhieVqvl~D~~G 293 (2267)
..+++++.++.++.| |+|+||..|++|+||.++.+.+................++++++|++. .+++.+.+++++
T Consensus 19 t~~~~~~~~f~~~~g-~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~d~Rv~vv~~~-- 95 (192)
T d1gsaa2 19 TRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGE-- 95 (192)
T ss_dssp ESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTE--
T ss_pred ECCHHHHHHHHHHcC-CeEEEEcCCCeEEEEEEeecCchhhhHHHHHHHhcCccccccccccccccCceeEEEEECCc--
Confidence 579999999999987 999999999999999999866554443333333344568899999975 356777666543
Q ss_pred CEEE-eccc-----ccccccccceEEEecCCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEEEEEEccCCcEEEeeeCcc
Q 000092 294 NVAA-LHSR-----DCSVQRRHQKIIEEGPITVAPLETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 367 (2267)
Q Consensus 294 ~vi~-l~~R-----dcsvqrr~qKiieeaPa~~l~~e~~~eL~~~A~rla~aLGy~Ga~tVEfl~d~~~g~~yfLEINpR 367 (2267)
++. ...| +....+...--.+ |.. + .+...++...+.++++.+|.. .+.||++ . + |++|+|+=
T Consensus 96 -~~~a~~r~~~~~~~~~~n~~~Gg~~~--~~~-~-~~~~~~~a~~~~~~l~~~gl~-~~gVDii-~---~--~~~EiNv~ 163 (192)
T d1gsaa2 96 -PVPYCLARIPQGGETRGNLAAGGRGE--PRP-L-TESDWKIARQIGPTLKEKGLI-FVGLDII-G---D--RLTEINVT 163 (192)
T ss_dssp -ECSEEEEEECCSSCSCCCGGGTCEEE--EEE-C-CHHHHHHHHHHHHHHHHTTCC-EEEEEEE-T---T--EEEEEECS
T ss_pred -ceEEEEEecccCCcchhhhhccCcce--eec-c-cHHHHHHHHHHHHHHHhhcCc-eEEEEee-C---C--eEEEEEcC
Confidence 222 1111 1111111100111 111 2 234456666666777777763 4557876 2 2 78999986
Q ss_pred CcCCcceehhhhcCCHHHHHHHHH
Q 000092 368 LQVEHPVTEWIAEINLPAAQVAVG 391 (2267)
Q Consensus 368 lqgehpvtE~vtGvDL~~~qL~iA 391 (2267)
-.++..-.+.++|+|+.+..++..
T Consensus 164 s~~g~~~l~~~~g~~ia~~ivd~l 187 (192)
T d1gsaa2 164 SPTCIREIEAEFPVSITGMLMDAI 187 (192)
T ss_dssp SCCCHHHHHHHSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHH
Confidence 555566678899999999988753
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=8.2e-07 Score=89.79 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=87.1
Q ss_pred CccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCC
Q 000092 47 PIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNN 115 (2267)
Q Consensus 47 ~~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~ 115 (2267)
-.+||||+|.|. .++.+++++|+.||+++..+.+.. .-+.-...||+.|.-|
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe-----------TVstd~d~aD~lYfep------ 65 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE-----------TVSTDYDTSDRLYFEP------ 65 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT-----------SSTTSTTSSSEEECCC------
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh-----------hhhcChhhcCceEEcc------
Confidence 468999999985 689999999999999973333332 2233345899999887
Q ss_pred CccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcCH
Q 000092 116 NYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPPATSMAALGDK 173 (2267)
Q Consensus 116 ~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgDK 173 (2267)
++.+.+.++.+++++|+|++.+|..... .++..|++.|+.++|.+++++..+-|.
T Consensus 66 --lt~e~v~~Ii~~E~p~~ii~~~GGQtal-nla~~L~~~gv~iLGt~~~~Id~aEDR 120 (121)
T d1a9xa4 66 --VTLEDVLEIVRIEKPKGVIVQYGGQTPL-KLARALEAAGVPVIGTSPDAIDRAEDR 120 (121)
T ss_dssp --CSHHHHHHHHHHHCCSEEECSSSTHHHH-TTHHHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred --CCHHHHHHHHHHhCCCEEEeehhhhhHH-HHHHHHHHcCCcEECCCHHHHHHHHCc
Confidence 6789999999999999999999865542 377889999999999999999988875
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=5.1e-06 Score=84.90 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=80.3
Q ss_pred CCccEEEEECchH-----------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCC
Q 000092 46 KPIHSILIANNGM-----------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNN 114 (2267)
Q Consensus 46 ~~~kkVLIan~G~-----------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~ 114 (2267)
.-+|||||+|.|. .++.+++++|+.||+++ .+-..+..-+.-...||+.|..|
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~i-----------liN~NP~TVstd~d~aD~lYfeP----- 68 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-----------NVNSNPATIMTDPEMADATYIEP----- 68 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-----------EECSCTTCGGGCGGGSSEEECSC-----
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEE-----------EecCchHhhhcChhhcceeeeec-----
Confidence 4579999999986 68999999999999997 33222222223345899999987
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeCCCcCCCCCchHHH------HHHcCCeEeCCCHHHHHHh
Q 000092 115 NNYANVQLIVEMAEMTRVDAVWPGWGHASEIPELPDT------LSTKGIIFLGPPATSMAAL 170 (2267)
Q Consensus 115 ~~Y~dvd~Il~iA~~~~vDaV~pG~G~~sEn~~la~~------l~~~GI~fiGPs~eam~~l 170 (2267)
++.+.+.++.+++++|+|++.+|...-. .++.. +++.|+.++|.+++++..+
T Consensus 69 ---lt~e~v~~Ii~~E~pd~il~~~GGQtal-nla~~L~~~giL~~~~v~iLGt~~~sId~a 126 (127)
T d1a9xa3 69 ---IHWEVVRKIIEKERPDAVLPTMGGQTAL-NCALELERQGVLEEFGVTMIGATADAIDKA 126 (127)
T ss_dssp ---CCHHHHHHHHHHHCCSEEECSSSHHHHH-HHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred ---CCHHHHHHHHHHhCcCCeEEEeeeehHh-HHHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence 6799999999999999999999854321 13433 4456899999999998764
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=2.1e-05 Score=89.24 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEeecCCCCCc----CeE
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASWGGGGK----GIR 247 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~GgGGk----GIr 247 (2267)
-+.+|++++++|||+|++.. ++|++|+.++++++|| ||++|+....|+| ||+
T Consensus 5 E~eaK~lL~~yGIpvp~~~~-----------------------a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~ 61 (238)
T d2nu7b2 5 EYQAKQLFARYGLPAPVGYA-----------------------CTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVK 61 (238)
T ss_dssp HHHHHHHHHHTTCCCCCEEE-----------------------ESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEE
T ss_pred HHHHHHHHHHcCCCCCCceE-----------------------ECCHHHHHHHHHHhCCCcEEEEEeecccccccceEEE
Confidence 36789999999999999765 7899999999999996 9999986554444 899
Q ss_pred EECCHHHHHHHHHHHHhhC--------C---CCcEEEEEeccccceeeEEEEEcCC-CCEEEe
Q 000092 248 KVHNDDEVRALFKQVQGEV--------P---GSPIFIMKVASQSRHLEVQLLCDQY-GNVAAL 298 (2267)
Q Consensus 248 ~V~s~eEL~~a~~~~~~e~--------~---~~~I~VEeyI~g~rhieVqvl~D~~-G~vi~l 298 (2267)
++.+.+|............ . -..+++|+.++..+|+-+-+..|.. |.++.+
T Consensus 62 ~~~~~~e~~~~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~ 124 (238)
T d2nu7b2 62 VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFM 124 (238)
T ss_dssp EECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEE
T ss_pred eccccHHHHHHHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEE
Confidence 9999999888777764221 1 1258999999999999999888875 444433
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.44 E-value=0.0002 Score=81.23 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCC-cEEEeecC--CCCC------
Q 000092 173 KIGSSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGY-PAMIKASW--GGGG------ 243 (2267)
Q Consensus 173 K~~~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGy-PVVIKPs~--GgGG------ 243 (2267)
-+.+|++++++|||+|++.. ++|++|+.++++++|| |||+|+.- |+.|
T Consensus 6 E~eaK~lL~~yGIpvp~~~~-----------------------a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k 62 (246)
T d1eucb2 6 EYQSKKLMSDNGVKVQRFFV-----------------------ADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSS 62 (246)
T ss_dssp HHHHHHHHHTTTCCCCCEEE-----------------------ESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEETT
T ss_pred HHHHHHHHHHcCCCCCCeeE-----------------------ECCHHHHHHHHHHhCCCeEEEEEeecccccccccccc
Confidence 57899999999999999665 7899999999999996 89999842 2211
Q ss_pred ---cCeEEECCHHHHHHHHHHHHhhC------C-----CCcEEEEEeccccceeeEEEEEcCC
Q 000092 244 ---KGIRKVHNDDEVRALFKQVQGEV------P-----GSPIFIMKVASQSRHLEVQLLCDQY 292 (2267)
Q Consensus 244 ---kGIr~V~s~eEL~~a~~~~~~e~------~-----~~~I~VEeyI~g~rhieVqvl~D~~ 292 (2267)
-||+.+.|.+|+.++++...... + ...+++|+.++.++|+-+.+..|..
T Consensus 63 ~~~GgV~~~~~~ee~~~~a~~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~~ 125 (246)
T d1eucb2 63 GLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS 125 (246)
T ss_dssp SCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEGG
T ss_pred CCcceEEEecChhHHHHHhhhhhcchhhhhhccccccccccceehhcccccceeeeeeeeccc
Confidence 47788999999999887654321 1 2468999999999999999988754
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.00062 Score=80.83 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=61.5
Q ss_pred cccccccCCCCCceeEEEEEEEecCccccCCcEEEEEEeccccc---------------------CCCcchHHHHHHHHH
Q 000092 1574 PLVLVERSPGLNNIGMVAWCMEMFTPEFPSGRTILIVANDVTFK---------------------AGSFGPREDAFFLAV 1632 (2267)
Q Consensus 1574 ~l~~~~r~~g~n~~gmv~~~~~~~tp~~~~Gr~vvvianD~T~~---------------------~GS~g~~~~~k~~ra 1632 (2267)
.|.|+...-|. +||+|+.++ +|++|-||||+..+. ||.+-+..+.|..++
T Consensus 51 sF~E~~~~~a~---svVtG~ARL------~G~PVGVIAne~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~ 121 (404)
T d1uyra2 51 SFFETLSGWAK---GVVVGRARL------GGIPLGVIGVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQA 121 (404)
T ss_dssp CCEEESTTSCT---TEEEEEEEE------TTEEEEEEEECCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHH
T ss_pred ceeehhhccCC---ceEEEEEEE------CCEEEEEEEeCcccccCCccCCcccccchhhhhhccCCccCchHHHHHHHH
Confidence 57777666553 489999988 999999999997665 577778889999888
Q ss_pred H-HHHHHcCCCEEEEEcCCCCCCCch
Q 000092 1633 T-DLACAKKLPLIYLAANSGARIGVA 1657 (2267)
Q Consensus 1633 ~-elA~~~~iP~I~l~~ssGARi~~~ 1657 (2267)
+ +++...++|+|+|.+..|.-.|..
T Consensus 122 i~d~cd~~~lPLi~l~D~pGF~~G~~ 147 (404)
T d1uyra2 122 INDFNNGEQLPMMILANWRGFSGGQR 147 (404)
T ss_dssp HHHHHTTSCCCEEECCCCCCBCC---
T ss_pred HHHhhhccccceEEeecCCcccCcHH
Confidence 7 588899999999999999988833
|
| >d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Thermococcus kodakaraensis [TaxId: 311400]
Probab=96.92 E-value=0.00025 Score=76.49 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=85.3
Q ss_pred HHHHHHHcCCCCCCCCCCCccCCCCCcccccCcccccccccCCHHHHHHHHhhhCCcEEEeecCCCCCcCeEEECCHHHH
Q 000092 176 SSLIAQAANVPTLPWSGSHVKIPPESCLVTIPDDVYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEV 255 (2267)
Q Consensus 176 ~k~laq~aGVPtpp~~~~~~~~~~~~~~~~v~~~~~~~~~V~s~eea~~~a~~IGyPVVIKPs~GgGGkGIr~V~s~eEL 255 (2267)
.+++++++|+|.|+-.. |+| . ++.-|||||-..-.||+|-.++.|.++.
T Consensus 3 ~~k~Le~AGip~Pk~~~--------------Ped------------i-----~~d~~ViVK~~gAkggrGyFia~~~e~~ 51 (213)
T d2pbza2 3 QDKALEGAGIPRVEVVE--------------PED------------A-----KPDELYFVRIEGPRGGSGHFIVEGSELE 51 (213)
T ss_dssp HHHHHHHHTCCBCCBCC--------------SCC------------C-----CSSCCEEEECCC------------EECS
T ss_pred hHHHHHhCCCCCCcccC--------------ccc------------c-----CCCceEEEEeccccCcceEEEEcCHHHH
Confidence 46889999999997321 211 0 1256999999888899999999886543
Q ss_pred HHHHHHHHhhCCCCcEEEEEeccccceeeEEEEEcCCCCEEEeccccccccc---------cc--ceEEEecCCCCCCHH
Q 000092 256 RALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQR---------RH--QKIIEEGPITVAPLE 324 (2267)
Q Consensus 256 ~~a~~~~~~e~~~~~I~VEeyI~g~rhieVqvl~D~~G~vi~l~~Rdcsvqr---------r~--qKiieeaPa~~l~~e 324 (2267)
+..... .....||||+-|. ++-.+.|-..=-+-+-+.+-|.-.+. .. --++...|+. +-+.
T Consensus 52 ~~~~~~------~e~~~IeEyv~G~-~~~~~yFySpi~~~lEllg~DrR~~~~dg~~r~pa~~~~~~v~Gn~p~v-iRES 123 (213)
T d2pbza2 52 ERLSTL------EEPYRVERFIPGV-YLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA-LRES 123 (213)
T ss_dssp CCCC----------CCEEEECCCSC-EEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEECE-ECGG
T ss_pred Hhhhhc------ccceEEEEEeccc-eeeeeeeccccccceeeEeeeeeeecccccccccccCCCeEEEcCccce-ehHH
Confidence 321111 2356899999885 66666554322222222222211100 00 1123344655 5566
Q ss_pred HHHHHHHHHHHHHHHc------CceeeeEEEEEEEccCCcEEEeeeCccCcCC
Q 000092 325 TVKKLEQAARRLAKCV------NYVGAATVEYLYSMETGEYYFLELNPRLQVE 371 (2267)
Q Consensus 325 ~~~eL~~~A~rla~aL------Gy~Ga~tVEfl~d~~~g~~yfLEINpRlqge 371 (2267)
+.+++.+++.+++++. |..|++.+|..+| .++++.|+.+|+.++
T Consensus 124 LL~~vf~~ge~fV~a~k~l~~pG~iGPFcLq~~~d---~~~~vfevS~RI~gG 173 (213)
T d2pbza2 124 LLPQLYDYGLAFVRTMRELEPPGVIGPFALHFAYD---GSFKAIGIASRIDGG 173 (213)
T ss_dssp GHHHHHHHHHHHHHHHHHHSTTCCCSEEEEEEECS---SSCEEEEEESSBCSG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccceEEEEEc---CCEEEEEEeeeecCC
Confidence 7777777777666554 8889999999886 469999999999765
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=95.51 E-value=0.025 Score=61.25 Aligned_cols=165 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred CCCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchh
Q 000092 1940 AGQVWFPDSATKTAQALMDFNR-EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2018 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa 2018 (2267)
.+|.+..+.+.....-+...+. ..-|+-+..|++| |....|-.+.+++...+.|+.+++. |.+.+.+
T Consensus 23 l~g~Id~~~~~~~i~~l~~l~~~~~~~I~l~INS~G----------G~v~~g~ai~d~i~~~~~~v~tv~~--G~aaS~a 90 (190)
T d2f6ia1 23 LTDEINKKTADELISQLLYLDNINHNDIKIYINSPG----------GSINEGLAILDIFNYIKSDIQTISF--GLVASMA 90 (190)
T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEECHHH
T ss_pred ECCeeCHHHHHHHHHHHHHHhccCCCCeEEEEeCch----------hhhhHHHHHHHHHHhhCCceEEEEe--ccccchh
Confidence 4678888887777665554433 3568999999999 5566788899999999999999998 7666655
Q ss_pred HhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000092 2019 WVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIKA 2098 (2267)
Q Consensus 2019 ~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ 2098 (2267)
.+.+... .... .++.|++++-+=.|.+...= ...++...++.++..-..+..-+.+. +..+.++ +++.+ +
T Consensus 91 ~~i~~aG-~kg~--R~~~pns~imiH~~s~~~~G--~~~di~~~~~~l~~~~~~~~~i~a~~-tg~~~~~---i~~~~-~ 160 (190)
T d2f6ia1 91 SVILASG-KKGK--RKSLPNCRIMIHQPLGNAFG--HPQDIEIQTKEILYLKKLLYHYLSSF-TNQTVET---IEKDS-D 160 (190)
T ss_dssp HHHHHTS-CTTC--EEECTTCEEESSCTTCSCC----------CHHHHHHHHHHHHHHHHHH-HCCCHHH---HHHHH-H
T ss_pred HHHHHhC-CCCc--cccCCCcEEEEcccccccCC--cHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH---HHHhc-c
Confidence 4444331 1223 67788888777666554321 11222222222211111111111111 1222221 11111 1
Q ss_pred HHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCccchHHH
Q 000092 2099 REKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDWDKSRSF 2142 (2267)
Q Consensus 2099 r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~~~~R~~ 2142 (2267)
.|..=+|..+++.|+||+||+.+-..++
T Consensus 161 ----------------~d~~l~a~EAl~~GliD~Ii~~~~~~p~ 188 (190)
T d2f6ia1 161 ----------------RDYYMNALEAKQYGIIDEVIETKLPHPY 188 (190)
T ss_dssp ----------------TTCEECHHHHHHHTSCSEECCCSSCCTT
T ss_pred ----------------CCeeecHHHHHHcCCCcEEcccCCCCCC
Confidence 1334479999999999999987655544
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=95.51 E-value=0.044 Score=59.42 Aligned_cols=159 Identities=10% Similarity=0.144 Sum_probs=97.6
Q ss_pred CCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
-+|-+.+..+.++...+...+. ..-|+-+..|++| |....|-.+.+++...+.|+.+++. |.+.+-
T Consensus 31 l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G----------G~v~~g~~i~d~i~~~~~~V~tv~~--G~aaS~ 98 (193)
T d1tg6a1 31 VMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCV--GQAASM 98 (193)
T ss_dssp EESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSCSCEEEEEE--EEEETH
T ss_pred ECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCc----------ccHHHHHHHHHHHHhhcCceEEEEc--cchHHH
Confidence 3688889999888765554443 4569999999999 5567788999999999999999998 777774
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccchhhhhcchhhhHHHhhcchHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTKELLECMGRLDQKLIDLMAKLQEAKNNRTLAMVESLQQQIK 2097 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pegav~I~~r~~~~~~~m~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~ 2097 (2267)
|.+.+... .... .||.|+|++-+=.|.+...= ...++...++.++.....+.+-++.. ...+.+ .+++.+
T Consensus 99 a~~il~aG-~~g~--R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~-Tg~~~~---~i~~~~- 168 (193)
T d1tg6a1 99 GSLLLAAG-TPGM--RHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKH-TKQSLQ---VIESAM- 168 (193)
T ss_dssp HHHHHHTS-CTTC--EEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHH---HHHHHH-
T ss_pred HHHHhhcC-ccCc--cccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH---HHHHHh-
Confidence 44444321 1223 68889999888777655321 12223222222222111121111111 112221 111111
Q ss_pred HHHHhccchhhHHHHHhHhhhCcHHHHHHcCCcccccCc
Q 000092 2098 AREKQLLPTYTQVATKFAELHDTSLRMAAKGVIKEVVDW 2136 (2267)
Q Consensus 2098 ~r~~~l~p~y~~~a~~fadlhdt~~rm~~~G~Id~ii~~ 2136 (2267)
+ .|.+=+|..+++.|+||+||.-
T Consensus 169 ~----------------rD~~lta~EAl~yGliD~Ii~~ 191 (193)
T d1tg6a1 169 E----------------RDRYMSPMEAQEFGILDKVLVH 191 (193)
T ss_dssp S----------------SCEEECHHHHHHHTSCSEECSS
T ss_pred c----------------cCccCCHHHHHHcCCCCEEccC
Confidence 0 1445589999999999999964
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.037 Score=59.42 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=65.9
Q ss_pred CCccCHHHHHHHHHHHHHhccc--CCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCchh
Q 000092 1941 GQVWFPDSATKTAQALMDFNRE--ELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGGA 2018 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~~--~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GGa 2018 (2267)
.|.+..+.+.+....+...+.. .-|+.+..|++| |..-.|-.|.+++...+.|+.+++. |.+.+.|
T Consensus 22 ~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G----------G~v~~g~~i~d~i~~~~~~v~tv~~--G~aaS~a 89 (183)
T d1yg6a1 22 TGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG----------GVITAGMSIYDTMQFIKPDVSTICM--GQAASMG 89 (183)
T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETHH
T ss_pred CCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC----------ccHHHHHHHHHHHHhCCCCEEEEEE--EEeHHHH
Confidence 4778888888876666655443 469999999999 5677788899999999999999998 7777744
Q ss_pred Hhhh-ccccCCccceeecccccEEEeeCccc
Q 000092 2019 WVVV-DSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2019 ~vv~-~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
.+.+ +.. ... .|+.|+|++-+=.|.+
T Consensus 90 ~~I~~ag~--~~~--R~~~~ns~~miH~~~~ 116 (183)
T d1yg6a1 90 AFLLTAGA--KGK--RFCLPNSRVMIHQPLG 116 (183)
T ss_dssp HHHHHTSC--TTC--EEECTTCEEEECCCEE
T ss_pred HHHHHcCC--CCc--eeeCCCceEEeccccc
Confidence 4433 331 112 5677777776655543
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.18 E-value=0.064 Score=57.98 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=66.9
Q ss_pred CCCccCHHHHHHHHHHHHHhcc--cCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTAQALMDFNR--EELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a~~--~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
.+|.+.+..+.++...+...+. -.-|+.+..|++| |-...|-.|.+++...+.|+.+++. |.+.+-
T Consensus 29 l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G----------G~v~~glai~d~i~~~~~~v~t~~~--G~aaS~ 96 (192)
T d1y7oa1 29 LTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG----------GSVSAGLAIVDTMNFIKADVQTIVM--GMAASM 96 (192)
T ss_dssp EESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC----------BCHHHHHHHHHHHHHSSSCEEEEEE--EEEETH
T ss_pred ECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCC----------CCHHHHHHHHHHHHhcCcceEEEec--cccCCc
Confidence 3588888888887765554433 4669999999999 5566788999999999999999998 877774
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccc
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEG 2048 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~peg 2048 (2267)
|-+.+... .++. .+|.|+|++-+=.|.+
T Consensus 97 as~il~aG-~~g~--R~~~pns~~miHq~~~ 124 (192)
T d1y7oa1 97 GTVIASSG-AKGK--RFMLPNAEYMIHQPMG 124 (192)
T ss_dssp HHHHHTTS-CTTC--EEECTTCEEECCCCC-
T ss_pred cceeeeec-CCCc--cccchHHHHHhhcccc
Confidence 44433321 1233 5777777766555543
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.90 E-value=0.0029 Score=69.95 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=57.6
Q ss_pred CceecCCCceeEEEEccCCCEEcCCCcEEEEEcccc--------------------------------------------
Q 000092 688 SKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVMKM-------------------------------------------- 723 (2267)
Q Consensus 688 ~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaMKM-------------------------------------------- 723 (2267)
..|.|+.+|+|.+++|++|+.|++||+|++|+.-..
T Consensus 16 ~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 95 (237)
T d1vf7a_ 16 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQ 95 (237)
T ss_dssp EEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred EEEEeecCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcch
Confidence 359999999999999999999999999999974210
Q ss_pred -------------ceeeecCCCcEEEEe-eCCCCccCCCCEEEEEecC
Q 000092 724 -------------CMPLLSPASGVLQFK-MAEGQAMQAGELIARLDLD 757 (2267)
Q Consensus 724 -------------~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~~ 757 (2267)
.+.++||.+|+|... +.+|+.+.+|..+..+...
T Consensus 96 a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~~~~~~ 143 (237)
T d1vf7a_ 96 SKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 143 (237)
T ss_dssp HHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred hHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCcceeeEEEe
Confidence 123999999999888 9999999999766554433
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.78 E-value=0.14 Score=54.68 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCCccCHHHHHHHHHHHHHh--cccCCcEEEEecCCCCCCchhhhhhchHHHHHHHHHHHhcCCCCEEEEEccCCcCCch
Q 000092 1940 AGQVWFPDSATKTAQALMDF--NREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPVFVYIPMMAELRGG 2017 (2267)
Q Consensus 1940 ~gG~~~p~sa~K~arai~~a--~~~~lPLv~l~d~~Gf~~G~~~e~~gilk~ga~iv~al~~~~vP~i~vI~~~g~~~GG 2017 (2267)
.+|.+....+.+...-+... ....-|+-+..|++| |-.-.|-.+.+++...+.|+.+++. |.+.+.
T Consensus 18 l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G----------G~v~~gl~i~d~i~~~~~~v~t~~~--G~aaS~ 85 (179)
T d2cbya1 18 LGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG----------GSISAGMAIYDTMVLAPCDIATYAM--GMAASM 85 (179)
T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC----------BCHHHHHHHHHHHHHCSSCEEEEEE--EEEETH
T ss_pred ECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCC----------CCHHHHHHHHHHHHhhccceeeehh--hhhhhH
Confidence 36788888887776544332 224689999999999 5566778899999999999999998 777775
Q ss_pred hHhhhccccCCccceeecccccEEEeeCccch
Q 000092 2018 AWVVVDSRINSDHIEMYADRTAKGNVLEPEGM 2049 (2267)
Q Consensus 2018 a~vv~~~~~n~d~~~~~A~p~A~~gvl~pega 2049 (2267)
+.+.+... +... .||.|+|++=+=.|.+.
T Consensus 86 a~~il~ag-~k~~--R~~~~~s~~miH~~~~~ 114 (179)
T d2cbya1 86 GEFLLAAG-TKGK--RYALPHARILMHQPLGG 114 (179)
T ss_dssp HHHHHHTS-CTTC--EEECTTCEEECCCC---
T ss_pred HHHHHHcC-CCCc--eEECCchHhhcCCCchh
Confidence 54444321 1112 57777777755555433
|
| >d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Thermus thermophilus [TaxId: 274]
Probab=94.63 E-value=0.018 Score=58.44 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=40.7
Q ss_pred CCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 694 TPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 694 mPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.-|.|+.+.. +.|++|++|+++++||+-|...+|.||.+|+|..+
T Consensus 33 ~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~v 78 (127)
T d1onla_ 33 ALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEV 78 (127)
T ss_dssp HHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEE
T ss_pred hccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEE
Confidence 4577777764 89999999999999999999999999999999887
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=94.47 E-value=0.16 Score=56.65 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=67.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-CCC-CCCchh---------hhhhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-WRG-FSGGQR---------DLFEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-~~G-f~~G~~---------~e~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
..+.++......++++.+.+ ..+-.|+|.- .++ |+.|.. .+..+..+....++..+..+..|+|+.|-
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~ 104 (249)
T d1sg4a1 25 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 104 (249)
T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence 47889999999999998876 5777777754 445 887732 23345556777889999999999999996
Q ss_pred cCCcCCchhHhhhccccCCccceeecccccEE
Q 000092 2010 MMAELRGGAWVVVDSRINSDHIEMYADRTAKG 2041 (2267)
Q Consensus 2010 ~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~ 2041 (2267)
|.+.||+..... ..|+ ++|.+++++
T Consensus 105 --G~a~GgG~~lal---~~D~--~ia~~~a~f 129 (249)
T d1sg4a1 105 --GACPAGGCLVAL---TCDY--RILADNPRY 129 (249)
T ss_dssp --EEBCHHHHHHHT---TSSE--EEEECCTTC
T ss_pred --cccccccccccc---cccc--ceeeccccc
Confidence 777766543322 2477 777777654
|
| >d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Pea (Pisum sativum) [TaxId: 3888]
Probab=94.42 E-value=0.021 Score=58.27 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=39.8
Q ss_pred CCceeEEEEc-cCCCEEcCCCcEEEEEccccceeeecCCCcEEEEe
Q 000092 694 TPCKLLRYLV-SDGSHIDADTPYAEVEVMKMCMPLLSPASGVLQFK 738 (2267)
Q Consensus 694 mPG~vv~~~V-~~Gd~V~~G~~l~~iEaMKM~~~l~ap~~G~v~~i 738 (2267)
.-|.|+.+.. ++|++|++|++++.||+-|...+|.||.+|+|..+
T Consensus 34 ~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~v 79 (131)
T d1hpca_ 34 HLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEV 79 (131)
T ss_dssp HHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEE
T ss_pred hhhhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheee
Confidence 4466666654 79999999999999999999999999999999887
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.0078 Score=56.47 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=31.0
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
...|+||..|+|.+++|++||.|+.||+|++||
T Consensus 48 ~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 48 MNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 456999999999999999999999999999997
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=94.32 E-value=0.36 Score=53.08 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=69.7
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC--CCCCchhh----------hhhchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR--GFSGGQRD----------LFEGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~--Gf~~G~~~----------e~~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
...+.++.......+++.+++ .++-+|+|.-.. .|+.|..- ......+....++.++..+..|+|+.
T Consensus 21 ~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa 100 (230)
T d2a7ka1 21 HNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA 100 (230)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeee
Confidence 368899999999999999876 467777775433 48888631 11233456677888999999999999
Q ss_pred EccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.||++.... ..|+ ++|.++++++.
T Consensus 101 v~--G~a~GgG~~lal---~~D~--~ia~~~a~f~~ 129 (230)
T d2a7ka1 101 VD--GYAIGMGFQFAL---MFDQ--RLMASTANFVM 129 (230)
T ss_dssp EC--SEEETHHHHHHT---TSSE--EEEETTCEEEC
T ss_pred cc--cccccccccchh---ccch--hhccccchhhh
Confidence 96 777776543332 2587 88988888775
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=94.12 E-value=0.01 Score=55.19 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEE
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEV 718 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~i 718 (2267)
...|.||..|+|.+++|++||.|+.||+|++|
T Consensus 45 ~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 45 ETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp EEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred cEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence 34699999999999999999999999999986
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.023 Score=52.88 Aligned_cols=49 Identities=4% Similarity=0.156 Sum_probs=41.4
Q ss_pred ccEEEEECchHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEcc
Q 000092 48 IHSILIANNGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVP 109 (2267)
Q Consensus 48 ~kkVLIan~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp 109 (2267)
||+|.|+|+|+.|..++.+++++|+++. +. |.+++++....++.++..+
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~-----------vl--dp~~~~pa~~~a~dvIT~e 49 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVW-----------PV--GLDAEPAAVPFQQSVITAE 49 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEE-----------EE--CTTSCGGGSCGGGSEEEES
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEE-----------EE--cCCCCCcccccccceEEEe
Confidence 6899999999999999999999999875 34 5567788888888888764
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.68 E-value=0.014 Score=54.56 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 687 PSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 687 ~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
...|.||..|+|.++++++||.|+.||+|+.||.
T Consensus 41 ~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 74 (79)
T d1iyua_ 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence 4569999999999999999999999999999984
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.022 Score=53.29 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
+.++...-...+.||..|+|.++++++||.|+.||+|+.||+
T Consensus 35 ~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 76 (80)
T d1qjoa_ 35 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp EEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred EEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 334444445679999999999999999999999999999985
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.35 Score=54.24 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=67.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEe-cCCCCCCchh-----------hhhhchHHHHHHHHHHHhcCCCCEEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILA-NWRGFSGGQR-----------DLFEGILQAGSTIVENLRTYKQPVFVYI 2008 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~-d~~Gf~~G~~-----------~e~~gilk~ga~iv~al~~~~vP~i~vI 2008 (2267)
.++..+......++++.++. .++=+|+|. +-+.|+.|.. +...........++.++..+.+|+|+.|
T Consensus 31 Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v 110 (263)
T d1wz8a1 31 NAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAV 110 (263)
T ss_dssp GCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeec
Confidence 57999999999999998876 566667664 3355877752 1112233456677888999999999999
Q ss_pred ccCCcCCchh-HhhhccccCCccceeecccccEEEee
Q 000092 2009 PMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2009 ~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
- |.+.||+ .+++. .|+ ++|.++++++.-
T Consensus 111 ~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~p 139 (263)
T d1wz8a1 111 E--KVAVGAGLALALA----ADI--AVVGKGTRLLDG 139 (263)
T ss_dssp C--SEEETHHHHHHHH----SSE--EEEETTCEEECC
T ss_pred c--ccccccccccccc----ccc--cccccccccccc
Confidence 7 6555554 44444 487 899999998773
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=92.87 E-value=0.026 Score=52.64 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=33.4
Q ss_pred cccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 681 LQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 681 ~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
++...-...+.||..|+|.++++++||.|+.|++|+.||
T Consensus 38 vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~ 76 (79)
T d1ghja_ 38 IETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76 (79)
T ss_dssp EECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEEC
T ss_pred EEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEe
Confidence 333343456999999999999999999999999999997
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.79 Score=50.67 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=63.9
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEe-cCCCCCCchh--hh-----------hhchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILA-NWRGFSGGQR--DL-----------FEGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~-d~~Gf~~G~~--~e-----------~~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
..+..+......++++.+++...-+|++. .-+.|+.|.. .+ ........-+++..+..++.|+|+.
T Consensus 25 Nals~~~~~~l~~~l~~~~~d~~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~ 104 (245)
T d2f6qa1 25 NAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAV 104 (245)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEEE
Confidence 57889999999999999876433355443 3334776642 11 1112223457888899999999999
Q ss_pred EccCCcCCchhHhhhccccCCccceeecccccEEEee
Q 000092 2008 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2008 I~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|- |.+.||++.... ..|+ ++|.++++++.-
T Consensus 105 v~--G~a~GgG~~la~---~~D~--~ia~~~a~f~~p 134 (245)
T d2f6qa1 105 VN--GPAVGISVTLLG---LFDA--VYASDRATFHTP 134 (245)
T ss_dssp EC--SCEETHHHHGGG---GCSE--EEEETTCEEECC
T ss_pred EC--Cccccccccchh---hhhh--hhhhccCeEecc
Confidence 97 766666544332 2487 888888888763
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=92.42 E-value=2.3 Score=46.62 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=67.1
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEec-CCCCCCchh-hhh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILAN-WRGFSGGQR-DLF-----------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d-~~Gf~~G~~-~e~-----------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++.++......++++.++. ..+-+|+|.- -.+|+.|.. .+. .........+..++..+.+|+|+.
T Consensus 21 Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa 100 (253)
T d1uiya_ 21 NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA 100 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEE
Confidence 58999999999999999976 6777777754 344655432 111 122334556778899999999999
Q ss_pred EccCCcCCchh-HhhhccccCCccceeecccccEEEeeC
Q 000092 2008 IPMMAELRGGA-WVVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2008 I~~~g~~~GGa-~vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|- |.+.||+ ..++. .|+ .+|.++++++.-+
T Consensus 101 v~--G~a~GgG~~lal~----~D~--ria~~~a~~~~~e 131 (253)
T d1uiya_ 101 VN--GPAVAGGAGLALA----CDL--VVMDEEARLGYTE 131 (253)
T ss_dssp EC--SCEETHHHHHHHT----SSE--EEEETTCEEECCH
T ss_pred eC--eEEehhhHHHHhh----hhh--hhhhhhhHHhhhh
Confidence 97 6666654 44443 487 8999999888643
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.044 Score=52.03 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=35.9
Q ss_pred eeecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEcc
Q 000092 678 TCLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEVM 721 (2267)
Q Consensus 678 t~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEaM 721 (2267)
-|.++.......|.||..|+|.++++++|+.|+.|++|+.||.-
T Consensus 38 l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~ 81 (87)
T d1k8ma_ 38 ICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (87)
T ss_dssp CEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred EEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 34444444445689999999999999999999999999999864
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.43 E-value=0.013 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=34.5
Q ss_pred ecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 680 LLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 680 ~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
.++...-...|.||.+|+|.++++++||.|+.||+|+.||+
T Consensus 37 ~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~ 77 (80)
T d1laba_ 37 EVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 77 (80)
T ss_dssp EEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBC
T ss_pred EEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 33334444579999999999999999999999999999985
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=90.70 E-value=0.23 Score=47.75 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CccEEEEECchH---------HHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCc
Q 000092 47 PIHSILIANNGM---------AAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNY 117 (2267)
Q Consensus 47 ~~kkVLIan~G~---------~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y 117 (2267)
|-+||+|+-+|. .|..+.+++++.||+++ .. |.+... .
T Consensus 1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~-----------~i--~~~~~~--------------------~ 47 (96)
T d1iowa1 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------PV--DPKEVD--------------------V 47 (96)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEE-----------EE--CTTTSC--------------------G
T ss_pred CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEe-----------ee--cCcccc--------------------c
Confidence 557899998874 57788999999999985 22 221110 0
Q ss_pred cCHHHHHHHHHHcCCCEEEeC-CCcCCCCCchHHHHHHcCCeEeCCCHHHHHHhcC
Q 000092 118 ANVQLIVEMAEMTRVDAVWPG-WGHASEIPELPDTLSTKGIIFLGPPATSMAALGD 172 (2267)
Q Consensus 118 ~dvd~Il~iA~~~~vDaV~pG-~G~~sEn~~la~~l~~~GI~fiGPs~eam~~lgD 172 (2267)
. ..+..++|.|++. .|...|+-.++..|+..||++.|+++.+..++.|
T Consensus 48 ~-------~~~~~~~d~vF~~lHG~~GEdG~iQ~~le~l~IPytGs~~~asal~~D 96 (96)
T d1iowa1 48 T-------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 (96)
T ss_dssp G-------GTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred h-------hhhccCceeEEEeccCcchhccHHHHHHHHcCCCccCCCHHHHHHhcC
Confidence 0 0123457888875 4778899999999999999999999999988765
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=90.63 E-value=0.028 Score=52.65 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=33.8
Q ss_pred cccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEEc
Q 000092 681 LQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVEV 720 (2267)
Q Consensus 681 ~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iEa 720 (2267)
++.......+.||..|+|.++++++|+.|+.||+|++||+
T Consensus 38 iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~ 77 (81)
T d1gjxa_ 38 LETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3333344568999999999999999999999999999984
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.56 E-value=0.14 Score=57.80 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=53.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCc----cccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGG----PKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG----~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+....|........=+.| ++=+..
T Consensus 107 ~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~ 186 (275)
T d1dcia_ 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALD 186 (275)
T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHH
T ss_pred CCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccccccccccccccccccccccchhhhcc
Confidence 4699999999999999999999999999999864432 1112222222111000000111 122346
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++++.+.......+.
T Consensus 187 ~Glv~~v~~~~~~l~~~~~~~a 208 (275)
T d1dcia_ 187 SGLVSRVFPDKDVMLNAAFALA 208 (275)
T ss_dssp HTSSSEEESSHHHHHHHHHHHH
T ss_pred CCCceeeeehhhhhhhcccccc
Confidence 8999999987654444444443
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.51 E-value=2.6 Score=46.88 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=66.0
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhh--h------------------hchHHHHHHHHHHHhc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDL--F------------------EGILQAGSTIVENLRT 1999 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e--~------------------~gilk~ga~iv~al~~ 1999 (2267)
.++.++-.....++++.++. ..+-+|+|.-.+ .|+.|..-. . .........++..+..
T Consensus 26 Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 105 (275)
T d1dcia_ 26 NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEK 105 (275)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHh
Confidence 58999999999999999976 567777775443 366555321 1 1122334567888999
Q ss_pred CCCCEEEEEccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
+..|+|+.|- |.+.||+..... ..|+ ++|.++++++.
T Consensus 106 ~~kPvIaav~--G~a~GgG~~lal---~~D~--ria~~~a~f~~ 142 (275)
T d1dcia_ 106 CPKPVIAAIH--GGCIGGGVDLIS---ACDI--RYCTQDAFFQV 142 (275)
T ss_dssp SSSCEEEEEC--SEEETHHHHHHT---TSSE--EEEETTCEEEC
T ss_pred cCCCEEEEEe--eEeehhhHHHHh---hcCc--hhhccCccccc
Confidence 9999999997 666665543322 3587 88888888775
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.13 Score=57.35 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccccccccCCcccc----ccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVYSSHMQLGGPKI----MAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy~s~~~lGG~~i----~~~ 1806 (2267)
..|+|+.|.|.|+|+|+.++..||++|+.+++.+.+. |..-+.+.+|..... ..-+-|-.+ ..+
T Consensus 98 ~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~-~l~l~g~~~~a~eA~~ 176 (245)
T d2f6qa1 98 PKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT-EMLIFGKKLTAGEACA 176 (245)
T ss_dssp CSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH-HHHTTCCCEEHHHHHH
T ss_pred CCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh-hhcccccccccccccc
Confidence 3699999999999999999999999999999764332 223455566643211 111223222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.+++++ +..+.+.+|..-+
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~~l 200 (245)
T d2f6qa1 177 QGLVTEVFPDS-TFQKEVWTRLKAF 200 (245)
T ss_dssp TTSCSEEECTT-THHHHHHHHHHHH
T ss_pred cccccccCCcc-hHHHHHHHHHHHH
Confidence 99999999754 4455556664433
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=1.5 Score=48.89 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=66.5
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecCC-C--CCCchh--h------hhhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANWR-G--FSGGQR--D------LFEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~~-G--f~~G~~--~------e~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
-+++++......++++.+++..+-.|+|.-.. | |+.|.. . .........-.++..+.++.+|+|+.|-
T Consensus 26 Nal~~~~~~~l~~al~~~~~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~- 104 (261)
T d1ef8a_ 26 NALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVE- 104 (261)
T ss_dssp TCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhccc-
Confidence 57889999999999999876666677776543 3 776642 1 1111223456788999999999999996
Q ss_pred CCcCCc-hhHhhhccccCCccceeecccccEEEee
Q 000092 2011 MAELRG-GAWVVVDSRINSDHIEMYADRTAKGNVL 2044 (2267)
Q Consensus 2011 ~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~A~~gvl 2044 (2267)
|-+.| |...++.+ |+ ++|.++++++.-
T Consensus 105 -G~a~GgG~~lal~c----D~--ria~~~a~~~~p 132 (261)
T d1ef8a_ 105 -GSVWGGAFEMIMSS----DL--IIAASTSTFSMT 132 (261)
T ss_dssp -SEEETHHHHHHHHS----SE--EEEETTCEEECC
T ss_pred -ccccchhhhhhhhh----hh--hhhhHhHHHhhh
Confidence 65665 55555554 77 888888887653
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.90 E-value=7.7 Score=43.95 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhh-hh-----------hchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRD-LF-----------EGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~-e~-----------~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
-++.+....-...+++.++. ..+-+|+|...+ .|+.|..- +. ........+++..+..+.+|+|+.
T Consensus 30 Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 109 (310)
T d1wdka4 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAA 109 (310)
T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceee
Confidence 47889999999999999976 466667776543 47777421 10 011123456788899999999999
Q ss_pred EccCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |-+.||+. +++. .|+ .+|.++++++.
T Consensus 110 v~--G~a~GgG~elal~----cD~--ria~~~a~f~~ 138 (310)
T d1wdka4 110 IN--GIALGGGLEMCLA----ADF--RVMADSAKIGL 138 (310)
T ss_dssp EC--SCEETHHHHHHHT----SSE--EEEETTCEEEC
T ss_pred cc--ccccccccccchh----hhh--hhccccceecc
Confidence 96 66666554 4444 476 78888888776
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=1.8 Score=48.07 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=65.4
Q ss_pred CccCHHHHHHHHHHHHHhcccCCcEEEEecC-CCCCCchhh-h------------hhchHHHHHHHHHHHhcCCCCEEEE
Q 000092 1942 QVWFPDSATKTAQALMDFNREELPLFILANW-RGFSGGQRD-L------------FEGILQAGSTIVENLRTYKQPVFVY 2007 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~~~lPLv~l~d~-~Gf~~G~~~-e------------~~gilk~ga~iv~al~~~~vP~i~v 2007 (2267)
.++.+.......++++.+.+...-+|+|.-. ..|+.|..- + .....+....++.++..+..|+|+.
T Consensus 25 Nals~~~~~el~~al~~~~~d~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa 104 (258)
T d2fw2a1 25 NALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVS 104 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeeee
Confidence 5788899999999998887654455555433 348777531 1 0122345667888899999999999
Q ss_pred EccCCcCCchhHhhhccccCCccceeecccccEEEe
Q 000092 2008 IPMMAELRGGAWVVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2008 I~~~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|- |.+.||+...... .|+ ++|.++++++.
T Consensus 105 v~--G~a~GgG~~lal~---~D~--~ia~~~a~f~~ 133 (258)
T d2fw2a1 105 VN--GPAIGLGASILPL---CDL--VWANEKAWFQT 133 (258)
T ss_dssp EC--SCEETHHHHTGGG---SSE--EEEETTCEEEC
T ss_pred cc--ccccccccccccc---ccc--cceecccceee
Confidence 96 7777655443322 477 88888888875
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=89.68 E-value=0.042 Score=51.33 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred eecccCCCCCceecCCCceeEEEEccCCCEEcCCCcEEEEE
Q 000092 679 CLLQNDHDPSKLVAETPCKLLRYLVSDGSHIDADTPYAEVE 719 (2267)
Q Consensus 679 ~~~~~~~d~~~l~APmPG~vv~~~V~~Gd~V~~G~~l~~iE 719 (2267)
+.++.+.-...|.||..|+|.++++++||.|+.||+|+.||
T Consensus 37 ~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~ 77 (80)
T d1pmra_ 37 VEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred EEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 34444445567999999999999999999999999999987
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.13 E-value=2.3 Score=47.21 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecC-CCCCCchh--h------------------hhhchHHHHHHHHHHHhc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANW-RGFSGGQR--D------------------LFEGILQAGSTIVENLRT 1999 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~-~Gf~~G~~--~------------------e~~gilk~ga~iv~al~~ 1999 (2267)
-++.++...-...+++.+++ .++=+|+|.-. ..|+.|.. . .....+.....+...+..
T Consensus 27 Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (266)
T d1pjha_ 27 NALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIK 106 (266)
T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999877 56777777443 33766642 0 111233455567888999
Q ss_pred CCCCEEEEEccCCcCCc-hhHhhhccccCCccceeeccc-ccEEEe
Q 000092 2000 YKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADR-TAKGNV 2043 (2267)
Q Consensus 2000 ~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p-~A~~gv 2043 (2267)
+.+|+|+.|- |.+.| |...++.+ |+ ++|.+ +++++.
T Consensus 107 ~~kP~IAav~--G~a~GgG~~lal~~----D~--~ia~~~~~~~~~ 144 (266)
T d1pjha_ 107 HSKVLICCLN--GPAIGLSAALVALC----DI--VYSINDKVYLLY 144 (266)
T ss_dssp CCSEEEEEEC--SCEEHHHHHHHHHS----SE--EEESSTTCEEEC
T ss_pred cchhhhhhhh--cccccccccchhcc----ch--hhhhhccccccc
Confidence 9999999997 55555 55555554 66 77754 456554
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=89.08 E-value=4.8 Score=44.59 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=66.3
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh--------------hchHHHHHHHHHHHhcCCCCE
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF--------------EGILQAGSTIVENLRTYKQPV 2004 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~--------------~gilk~ga~iv~al~~~~vP~ 2004 (2267)
..++.+........+++.+.. ..+-+|+|.-.+ +|+.|..-.. .........+...+..+.+|+
T Consensus 24 ~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (269)
T d1nzya_ 24 RNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV 103 (269)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchh
Confidence 368999999999999998876 456677775443 4777752110 011223456788899999999
Q ss_pred EEEEccCCcCCchhH-hhhccccCCccceeecccccEEEeeC
Q 000092 2005 FVYIPMMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNVLE 2045 (2267)
Q Consensus 2005 i~vI~~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gvl~ 2045 (2267)
|+.|- |-+.||+. +++. .|+ ++|.++++++..+
T Consensus 104 Iaav~--G~a~GgG~~lal~----~D~--ria~~~a~~~~~~ 137 (269)
T d1nzya_ 104 LAAIN--GVAAGGGLGISLA----SDM--AICADSAKFVCAW 137 (269)
T ss_dssp EEEEC--SEEETHHHHHHHH----SSE--EEEETTCEEECCH
T ss_pred ehhhh--hhcCCCceeeeec----ccH--hhhhhhhhhcccc
Confidence 99997 66666554 4444 477 8888888776633
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.49 E-value=2.5 Score=47.00 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=68.2
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-C-CCCchhhh---------hhchHHHHHHHHHHHhcCCCCEEEEEc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-G-FSGGQRDL---------FEGILQAGSTIVENLRTYKQPVFVYIP 2009 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-G-f~~G~~~e---------~~gilk~ga~iv~al~~~~vP~i~vI~ 2009 (2267)
.++.........++++.++. ..+-+|+|.-.. + |++|-... .....+....++.++..+..|+|+.|-
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~ 107 (266)
T d1hzda_ 28 NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAID 107 (266)
T ss_dssp TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccc
Confidence 57888999999999999876 678888886544 4 56654211 122344566788889999999999996
Q ss_pred cCCcCCchhH-hhhccccCCccceeecccccEEEe
Q 000092 2010 MMAELRGGAW-VVVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2010 ~~g~~~GGa~-vv~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+. +++. .|+ ++|.++++++.
T Consensus 108 --G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 134 (266)
T d1hzda_ 108 --GLALGGGLELALA----CDI--RVAASSAKMGL 134 (266)
T ss_dssp --EEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred --cccccccceeccc----cce--eeecCCcEEee
Confidence 66666554 4444 487 89999998875
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=87.55 E-value=2.7 Score=46.37 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=65.8
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEe-cCCCCCCchh---------hhhhchHHHHHHHHHHHhcCCCCEEEEEcc
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILA-NWRGFSGGQR---------DLFEGILQAGSTIVENLRTYKQPVFVYIPM 2010 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~-d~~Gf~~G~~---------~e~~gilk~ga~iv~al~~~~vP~i~vI~~ 2010 (2267)
..+.+....-..++++.+++ .++=+|+|. +-+.|+.|.. ......+..+..++.++..+..|+|+.|
T Consensus 35 Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v-- 112 (249)
T d1szoa_ 35 LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAV-- 112 (249)
T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEE--
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeee--
Confidence 67899999999999999876 455555554 3334766642 2223334456788999999999999988
Q ss_pred CCcCCchhHhhhccccCCccceeecccccEEE
Q 000092 2011 MAELRGGAWVVVDSRINSDHIEMYADRTAKGN 2042 (2267)
Q Consensus 2011 ~g~~~GGa~vv~~~~~n~d~~~~~A~p~A~~g 2042 (2267)
+|.+.||...++.+ |+ ++|.+++++.
T Consensus 113 ~g~~~GG~~l~l~~----D~--ria~~~a~f~ 138 (249)
T d1szoa_ 113 NGPVTNAPEIPVMS----DI--VLAAESATFQ 138 (249)
T ss_dssp CSCBCSSTHHHHTS----SE--EEEETTCEEE
T ss_pred cccccccccccccc----cc--ccccCCcEEE
Confidence 47777776555553 76 8888888764
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=87.50 E-value=0.24 Score=55.01 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=53.3
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc-------h---HHHHHhhccccccccccCCc----ccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-------F---SALNKLLGREVYSSHMQLGG----PKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG-------p---~al~~~lG~evy~s~~~lGG----~~i~~~n 1807 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- . .-+-+.+|..... ..-+-| ++-...-
T Consensus 94 ~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~~l~~~~g~~~a~-~l~l~g~~~~a~eA~~~ 172 (253)
T d1uiya_ 94 PKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAK-DLLLTGRLVEAREAKAL 172 (253)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHH-HHHHHCCEEEHHHHHHH
T ss_pred CCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccccchhhhhcccCHHHHH-HHhhcCcCCCHHHHHHh
Confidence 36999999999999999999999999999997644321 1 1122233322100 001112 1223468
Q ss_pred CceEEEecCcHHHHHHHHHHHhc
Q 000092 1808 GVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
|++|.+++++. ....+.+|...
T Consensus 173 Glv~~v~~~~~-~~~~a~~~a~~ 194 (253)
T d1uiya_ 173 GLVNRIAPPGK-ALEEAKALAEE 194 (253)
T ss_dssp TSCSEEECTTC-HHHHHHHHHHH
T ss_pred CCCcccccccc-cchhHHHHHHh
Confidence 99999986543 34555555443
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.19 Score=56.45 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=58.0
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcc-------ee----cchHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPI-------IL----TGFSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i-------~l----tGp~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||+-++..||++|+.+++.+ ++ .|...+.+.+|... .-+.+.+.+ +-...
T Consensus 98 ~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a-~eA~~ 176 (258)
T d2fw2a1 98 KKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTA-REACA 176 (258)
T ss_dssp CSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEH-HHHHH
T ss_pred ceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhhccCccccc-ccccc
Confidence 4699999999999999999999999999999763 22 23344555666542 112222222 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHHhc
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSY 1830 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsy 1830 (2267)
-|++|.+++++ +..+.+..|..-
T Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~~ 199 (258)
T d2fw2a1 177 KGLVSQVFLTG-TFTQEVMIQIKE 199 (258)
T ss_dssp TTSCSEEECST-THHHHHHHHHHH
T ss_pred ccccccccccc-ccccccchhhhh
Confidence 99999999754 444555555443
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=87.35 E-value=0.21 Score=55.82 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=55.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCc---------ceec----chHHHHHhhcccc----ccccccCCccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQP---------IILT----GFSALNKLLGREV----YSSHMQLGGPKIM 1804 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~---------i~lt----Gp~al~~~lG~ev----y~s~~~lGG~~i~ 1804 (2267)
..|+|+.|.|.|.|||+-++..||++|+.+++. +++. |..-+.+.+|... .-+.+.+.+ +-+
T Consensus 96 ~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a-~~A 174 (249)
T d1sg4a1 96 NLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPP-AEA 174 (249)
T ss_dssp SSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCH-HHH
T ss_pred ccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccH-HHH
Confidence 369999999999999999999999999999864 2221 1122444455322 122233322 225
Q ss_pred cccCceEEEecCcHHHHHHHHHHH
Q 000092 1805 ATNGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1805 ~~nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
..-|++|.++++ .+..+.+++|.
T Consensus 175 ~~~Glv~~v~~~-~~l~~~a~~~a 197 (249)
T d1sg4a1 175 LQVGIVDQVVPE-EQVQSTALSAI 197 (249)
T ss_dssp HHHTSSSEEECG-GGHHHHHHHHH
T ss_pred HhhccccccCCh-HHHHHHHHHHH
Confidence 579999999964 34444555553
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.32 E-value=3.2 Score=45.66 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=62.6
Q ss_pred CCccCHHHHHHHHHHHHHhcc-cCCcEEEEecCCC-CCCchh--hhhhch-----HHHHHHHHHHHhcCCCCEEEEEccC
Q 000092 1941 GQVWFPDSATKTAQALMDFNR-EELPLFILANWRG-FSGGQR--DLFEGI-----LQAGSTIVENLRTYKQPVFVYIPMM 2011 (2267)
Q Consensus 1941 gG~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~G-f~~G~~--~e~~gi-----lk~ga~iv~al~~~~vP~i~vI~~~ 2011 (2267)
.-++.+.-.....++++.+++ ..+-+|+|.-.++ |+.|.. ...... ....-.++..+..+.+|+|+.|-
T Consensus 28 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~-- 105 (260)
T d1mj3a_ 28 LNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVN-- 105 (260)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEc--
Confidence 358999999999999998876 5677777754443 766642 111111 11122335667888999999996
Q ss_pred CcCCchhHh-hhccccCCccceeecccccEEEe
Q 000092 2012 AELRGGAWV-VVDSRINSDHIEMYADRTAKGNV 2043 (2267)
Q Consensus 2012 g~~~GGa~v-v~~~~~n~d~~~~~A~p~A~~gv 2043 (2267)
|.+.||+.. +++ .|+ ++|.++++++.
T Consensus 106 G~a~GgG~~lal~----~D~--~ia~~~a~f~~ 132 (260)
T d1mj3a_ 106 GYALGGGCELAMM----CDI--IYAGEKAQFGQ 132 (260)
T ss_dssp SEEETHHHHHHHH----SSE--EEEETTCEEEC
T ss_pred CeEeHHHHHHHHH----CCE--EEEcCCCEEEC
Confidence 666665543 443 477 88888888877
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.64 Score=51.93 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=55.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceecc-------hH-HHH---Hhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTG-------FS-ALN---KLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~ltG-------p~-al~---~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+.- +. .+. +.+|.... -+...+. ++=...
T Consensus 96 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~-a~eA~~ 174 (261)
T d1ef8a_ 96 PKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPIT-AQRALA 174 (261)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEE-HHHHHH
T ss_pred chhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccccccccccCceEc-HHHHHH
Confidence 36999999999999999999999999999998643321 11 111 11222110 0001111 111246
Q ss_pred cCceEEEecCcHHHHHHHHHHHhcC
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLSYV 1831 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Lsyl 1831 (2267)
.|++|.+++ +.+..+.+.+|..-+
T Consensus 175 ~Glv~~vv~-~~~~~~~a~~~a~~l 198 (261)
T d1ef8a_ 175 VGILNHVVE-VEELEDFTLQMAHHI 198 (261)
T ss_dssp TTSCSEEEC-HHHHHHHHHHHHHHH
T ss_pred cCCcceeee-chhhhhhhHHHHHHH
Confidence 999999996 556667777776655
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.03 E-value=3.3 Score=46.67 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=58.7
Q ss_pred CccCHHHHHHHHHHHHHhcc-cCCcEEEEecCC-CCCCchhhhh---------------------------hchHHHHHH
Q 000092 1942 QVWFPDSATKTAQALMDFNR-EELPLFILANWR-GFSGGQRDLF---------------------------EGILQAGST 1992 (2267)
Q Consensus 1942 G~~~p~sa~K~arai~~a~~-~~lPLv~l~d~~-Gf~~G~~~e~---------------------------~gilk~ga~ 1992 (2267)
.++.+.....+..+++.+++ ..+-+|+|.-.. +|..|..+-. .........
T Consensus 42 NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (297)
T d1q52a_ 42 NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILE 121 (297)
T ss_dssp TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHH
Confidence 68999999999999999976 578888876543 2332211100 000011235
Q ss_pred HHHHHhcCCCCEEEEEccCCcCCc-hhHhhhccccCCccceeecccc-cEEEee
Q 000092 1993 IVENLRTYKQPVFVYIPMMAELRG-GAWVVVDSRINSDHIEMYADRT-AKGNVL 2044 (2267)
Q Consensus 1993 iv~al~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~n~d~~~~~A~p~-A~~gvl 2044 (2267)
+...+..+.+|+|+.|- |.+.| |...++.+ |+ ++|.++ ++++.-
T Consensus 122 ~~~~i~~~~kPvIaav~--G~a~GGG~~lal~~----D~--~ia~~~~~~f~~p 167 (297)
T d1q52a_ 122 VQRLIRFMPKVVICLVN--GWAAGGGHSLHVVC----DL--TLASREYARFKQT 167 (297)
T ss_dssp HHHHHHHSSSEEEEEEC--SEEETHHHHHHHHS----SE--EEEETTTCEEECC
T ss_pred HHHHHHhcCCeEEEEEc--ceeeeccchhhhhh----hc--cccccccccceee
Confidence 77788889999999996 55555 44455554 55 555443 455553
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.83 E-value=0.61 Score=46.03 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=66.0
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEEE-EEeccCCCCCChhhhhccEE-EEccCCCCCCCccCHH
Q 000092 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLVA-MATPEDMRINAEHIRIADQF-VEVPGGTNNNNYANVQ 121 (2267)
Q Consensus 48 ~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i~~v~-~~t~~D~~~~a~~vr~ADe~-v~vp~~~~~~~Y~dvd 121 (2267)
+|+|.|+|. +-.+.++++.+++.||+++..+..-+.+. +-++.+...-..- .|-. +.+|. . .+.
T Consensus 1 ~KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~---~D~vvi~vp~-----~--~~~ 70 (116)
T d1y81a1 1 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKD---VDVIVFVVPP-----K--VGL 70 (116)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTT---CCEEEECSCH-----H--HHH
T ss_pred CcEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhcccc---ceEEEEEeCH-----H--HHH
Confidence 578999994 45789999999999998774332222211 2222222111111 2332 33332 2 256
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCC
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPP 163 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs 163 (2267)
.+++-|.+.++.++|---| .++.++.+.++++|+.++||.
T Consensus 71 ~~l~~~~~~g~k~v~~~~g--~~~~~~~~~a~~~gi~vigpn 110 (116)
T d1y81a1 71 QVAKEAVEAGFKKLWFQPG--AESEEIRRFLEKAGVEYSFGR 110 (116)
T ss_dssp HHHHHHHHTTCCEEEECTT--SCCHHHHHHHHHHTCEEECSC
T ss_pred HHHHHHHhcCCceEEeccc--hhhHHHHHHHHHcCCEEEcCC
Confidence 6777778889999997645 355668899999999999985
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.73 E-value=0.17 Score=55.25 Aligned_cols=39 Identities=15% Similarity=0.419 Sum_probs=33.1
Q ss_pred EEEccccceeeecCCCcEEEEe-eCCCCccCCCCEEEEEec
Q 000092 717 EVEVMKMCMPLLSPASGVLQFK-MAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 717 ~iEaMKM~~~l~ap~~G~v~~i-~~~G~~v~~G~~La~l~~ 756 (2267)
.||+.+. .+|.|+.+|+|+.+ |++|+.|++||+|++|+.
T Consensus 9 ~i~a~~~-~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 48 (237)
T d1vf7a_ 9 RTNAFRI-AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 48 (237)
T ss_dssp ECEESCE-EEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEeeEE-EEEEeecCEEEEEEECCCcCEECCCCEEEEEeh
Confidence 4555444 46999999999999 999999999999999854
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.60 E-value=0.27 Score=56.67 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=57.1
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-----------cchHHHHHhhccccccccccCCcc----ccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-----------TGFSALNKLLGREVYSSHMQLGGP----KIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-----------tGp~al~~~lG~evy~s~~~lGG~----~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+ .|..-+-..+|..... ..-+.|- +-...
T Consensus 103 ~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~-~lll~g~~~~a~eA~~ 181 (310)
T d1wdka4 103 NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAV-EWIASGKENRAEDALK 181 (310)
T ss_dssp SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH-HHHHHCCCEEHHHHHH
T ss_pred CccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhh-hhhccccccCHHHHhh
Confidence 479999999999999999999999999999986544 2333455556643210 1111222 22356
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++| +..+.+.+|..
T Consensus 182 ~Glv~~vv~~~-~l~~~a~~~a~ 203 (310)
T d1wdka4 182 VSAVDAVVTAD-KLGAAALDLIK 203 (310)
T ss_dssp TTSSSEEECGG-GHHHHHHHHHH
T ss_pred ccCccEEccHH-HHHHHHHHHHH
Confidence 99999999753 44444555543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.40 E-value=1.7 Score=45.97 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=66.0
Q ss_pred CccEEEEEC-chHHHHHHHHHHHHcCCcccccccceeEEEEEeccCCCCCChhhhhccEEEEccCCCCCCCccCHHHHHH
Q 000092 47 PIHSILIAN-NGMAAVKFIRSIRTWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVE 125 (2267)
Q Consensus 47 ~~kkVLIan-~G~~Av~iIrsaR~lG~~v~~~~~~i~~v~~~t~~D~~~~a~~vr~ADe~v~vp~~~~~~~Y~dvd~Il~ 125 (2267)
.||||||+| .|.++..+++.+-+.||++. ++. .+..........--+.+.. ++.|.+.+.+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~---------~~~--R~~~~~~~~~~~~~~~~~g-------D~~d~~~l~~ 63 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVT---------VLV--RDSSRLPSEGPRPAHVVVG-------DVLQAADVDK 63 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEE---------EEE--SCGGGSCSSSCCCSEEEES-------CTTSHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEE---------EEE--cChhhcccccccccccccc-------cccchhhHHH
Confidence 378999999 59999999999999999875 221 1211111111011122222 4556666666
Q ss_pred HHHHcCCCEEEeCCCcCCCC-C---------chHHHHHHcCCe---EeC----------CCHHHHHHhcCHHHHHHHHHH
Q 000092 126 MAEMTRVDAVWPGWGHASEI-P---------ELPDTLSTKGII---FLG----------PPATSMAALGDKIGSSLIAQA 182 (2267)
Q Consensus 126 iA~~~~vDaV~pG~G~~sEn-~---------~la~~l~~~GI~---fiG----------Ps~eam~~lgDK~~~k~laq~ 182 (2267)
+++ ++|+|+...|..... + .+.+++.++|+. +++ .++.......+|..+.+++++
T Consensus 64 al~--~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 141 (205)
T d1hdoa_ 64 TVA--GQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRE 141 (205)
T ss_dssp HHT--TCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccccccccccchHHHHHHHHHHh
Confidence 654 467777655543211 1 122334444432 221 112222445678888888888
Q ss_pred cCCC
Q 000092 183 ANVP 186 (2267)
Q Consensus 183 aGVP 186 (2267)
.|++
T Consensus 142 ~~~~ 145 (205)
T d1hdoa_ 142 SGLK 145 (205)
T ss_dssp TCSE
T ss_pred cCCc
Confidence 8875
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.44 E-value=0.65 Score=47.31 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=68.7
Q ss_pred ccEEEEECc----hHHHHHHHHHHHHcCCcccccccceeEEE-EEeccCCCCCChhhhhccEE-EEccCCCCCCCccCHH
Q 000092 48 IHSILIANN----GMAAVKFIRSIRTWAYETFGTEKAILLVA-MATPEDMRINAEHIRIADQF-VEVPGGTNNNNYANVQ 121 (2267)
Q Consensus 48 ~kkVLIan~----G~~Av~iIrsaR~lG~~v~~~~~~i~~v~-~~t~~D~~~~a~~vr~ADe~-v~vp~~~~~~~Y~dvd 121 (2267)
.|+|.|+|. +-.+.++++.+++.||+++..+..-..+. +-++.+...-... -|-+ +.+|+ ..+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~---iD~v~i~vp~-------~~~~ 88 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDK---IEVVDLFVKP-------KLTM 88 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSC---CSEEEECSCH-------HHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCcc---ceEEEEEeCH-------HHHH
Confidence 478999995 45899999999999999875444333321 2233322111111 2322 23332 2367
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCchHHHHHHcCCeEeCCC
Q 000092 122 LIVEMAEMTRVDAVWPGWGHASEIPELPDTLSTKGIIFLGPP 163 (2267)
Q Consensus 122 ~Il~iA~~~~vDaV~pG~G~~sEn~~la~~l~~~GI~fiGPs 163 (2267)
.+++-|.+.++.+||-..|.. +.+..+.++++|+.++||.
T Consensus 89 ~~~~e~~~~g~k~v~~~~G~~--~ee~~~~a~~~gi~vig~~ 128 (139)
T d2d59a1 89 EYVEQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVANR 128 (139)
T ss_dssp HHHHHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESC
T ss_pred HHHHHHHHhCCCEEEEecccc--CHHHHHHHHHCCCEEEcCC
Confidence 778888888999999876654 4468888999999999985
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=81.45 E-value=0.32 Score=54.56 Aligned_cols=86 Identities=19% Similarity=0.096 Sum_probs=55.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec----------c-hHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT----------G-FSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt----------G-p~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. | ...+.+.+|.... -+.+.+.+.+ ...
T Consensus 103 ~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~e-A~~ 181 (263)
T d1wz8a1 103 PRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEE-AER 181 (263)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHH-HHH
T ss_pred hcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccchhH-HHh
Confidence 3699999999999999999999999999999764331 1 1222334454321 1112222222 347
Q ss_pred cCceEEEecCcHHHHHHHHHHHh
Q 000092 1807 NGVVHLTVSDDLEGISAILKWLS 1829 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~Ls 1829 (2267)
-|++|.++++ .+..+.+.+|..
T Consensus 182 ~Glv~~vv~~-~~l~~~a~~~a~ 203 (263)
T d1wz8a1 182 LGLVALAVED-EKVYEKALEVAE 203 (263)
T ss_dssp HTSSSEEECG-GGHHHHHHHHHH
T ss_pred cCCcccccch-hhhhHHHHHHHH
Confidence 9999999975 345555555543
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=81.33 E-value=0.46 Score=53.33 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=55.5
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCccee-------c---c-hHHHHHhhcccc----ccccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIIL-------T---G-FSALNKLLGREV----YSSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~l-------t---G-p~al~~~lG~ev----y~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||+.++..||++|+.+++.+.+ . | ...+...+|... .-+.+.+.+ +=...
T Consensus 100 ~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a-~eA~~ 178 (269)
T d1nzya_ 100 KRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYP-EEAKD 178 (269)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCH-HHHHH
T ss_pred cchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhccccccccch-hHHHH
Confidence 469999999999999999999999999999875222 1 1 122334455432 112233322 22457
Q ss_pred cCceEEEecCcHHHHHHHHHHH
Q 000092 1807 NGVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1807 nGv~d~~v~dd~e~~~~i~~~L 1828 (2267)
-|++|.+++ +.+..+.+.+|.
T Consensus 179 ~Glv~~vv~-~~~l~~~a~~~a 199 (269)
T d1nzya_ 179 WGLVSRVYP-KDEFREVAWKVA 199 (269)
T ss_dssp HTSCSCEEC-HHHHHHHHHHHH
T ss_pred cCCcccccc-ccccccchhhhh
Confidence 999999996 444455555553
|
| >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose permease IIa domain, IIa-glc species: Bacillus subtilis [TaxId: 1423]
Probab=81.22 E-value=0.69 Score=48.13 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=16.1
Q ss_pred eeCCCCccCCCCEEEEEec
Q 000092 738 KMAEGQAMQAGELIARLDL 756 (2267)
Q Consensus 738 i~~~G~~v~~G~~La~l~~ 756 (2267)
.+++||.|.+||+|+++++
T Consensus 96 ~v~~Gd~Vk~G~~L~~~D~ 114 (158)
T d1gpra_ 96 FVSEGDRVEPGQKLLEVDL 114 (158)
T ss_dssp CCCTTCEECTTCEEEEECH
T ss_pred EEcCCCEEcCCCEEEEeCH
Confidence 3788889999999999875
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.47 E-value=0.39 Score=53.38 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=50.2
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcceec-----------chHHHHHhhccccc----cccccCCccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILT-----------GFSALNKLLGREVY----SSHMQLGGPKIMAT 1806 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~lt-----------Gp~al~~~lG~evy----~s~~~lGG~~i~~~ 1806 (2267)
..|+|+.|.|.|+|||..++..||++|+.+++.+.+. |...+.+.+|.... -+...+.+.+ ...
T Consensus 97 ~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~e-A~~ 175 (260)
T d1mj3a_ 97 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD-AKQ 175 (260)
T ss_dssp SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHH-HHH
T ss_pred CCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchh-hcc
Confidence 4699999999999999999999999999999875542 12235555554321 1111221111 346
Q ss_pred cCceEEEecCc
Q 000092 1807 NGVVHLTVSDD 1817 (2267)
Q Consensus 1807 nGv~d~~v~dd 1817 (2267)
-|++|.+++++
T Consensus 176 ~Glv~~v~~~~ 186 (260)
T d1mj3a_ 176 AGLVSKIFPVE 186 (260)
T ss_dssp HTSCSEEECTT
T ss_pred CCCceeeeccc
Confidence 88888888654
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=80.11 E-value=0.45 Score=52.28 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=56.7
Q ss_pred CceEEEEEcCcccchhhhhhccCCeEEEecCCcce-------ec---chHHHHHhhcccc----ccccccCCcccccccc
Q 000092 1742 ETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPII-------LT---GFSALNKLLGREV----YSSHMQLGGPKIMATN 1807 (2267)
Q Consensus 1742 ~iptis~vtg~~~G~gAyl~~lgd~~I~~~~a~i~-------lt---Gp~al~~~lG~ev----y~s~~~lGG~~i~~~n 1807 (2267)
..|+|+.|.|.|+|+|..++..||++|+.+++.+. +. |...+.+.+|... .-+.+.+.+ +=...-
T Consensus 94 ~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~l~~~iG~~~a~~l~l~g~~~~a-~eA~~~ 172 (230)
T d2a7ka1 94 NKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDA-PRCVDY 172 (230)
T ss_dssp CSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCH-HHHHHH
T ss_pred hcceeeecccccccccccchhccchhhccccchhhhccccccccccccccccccccccccccccccccccchH-HHHHHh
Confidence 46999999999999999999999999999997533 22 1223444555432 112233322 224579
Q ss_pred CceEEEecCcHHHHHHHHHHH
Q 000092 1808 GVVHLTVSDDLEGISAILKWL 1828 (2267)
Q Consensus 1808 Gv~d~~v~dd~e~~~~i~~~L 1828 (2267)
|++|.++++ .+..+.+.+|.
T Consensus 173 Glv~~vv~~-~~l~~~a~~~a 192 (230)
T d2a7ka1 173 RLVNQVVES-SALLDAAITQA 192 (230)
T ss_dssp TCCSEEECH-HHHHHHHHHHH
T ss_pred hhcccCCCh-HHHHHHHHHHH
Confidence 999999974 55555555553
|