Citrus Sinensis ID: 000101
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2239 | 2.2.26 [Sep-21-2011] | |||||||
| Q6EVK6 | 2193 | ATP-dependent helicase BR | yes | no | 0.968 | 0.988 | 0.673 | 0.0 | |
| O94421 | 1680 | SWI/SNF chromatin-remodel | yes | no | 0.326 | 0.435 | 0.365 | 1e-146 | |
| P25439 | 1638 | ATP-dependent helicase br | yes | no | 0.253 | 0.346 | 0.425 | 1e-140 | |
| Q9UTN6 | 1199 | Chromatin structure-remod | no | no | 0.322 | 0.602 | 0.386 | 1e-140 | |
| Q6DIC0 | 1577 | Probable global transcrip | yes | no | 0.241 | 0.343 | 0.439 | 1e-137 | |
| P51531 | 1590 | Probable global transcrip | yes | no | 0.241 | 0.340 | 0.439 | 1e-136 | |
| P32597 | 1359 | Nuclear protein STH1/NPS1 | yes | no | 0.308 | 0.508 | 0.372 | 1e-135 | |
| P51532 | 1647 | Transcription activator B | no | no | 0.254 | 0.346 | 0.410 | 1e-135 | |
| A7Z019 | 1606 | Transcription activator B | no | no | 0.254 | 0.354 | 0.423 | 1e-135 | |
| Q8K1P7 | 1613 | Transcription activator B | no | no | 0.254 | 0.353 | 0.427 | 1e-135 |
| >sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2755 bits (7142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1519/2257 (67%), Positives = 1749/2257 (77%), Gaps = 89/2257 (3%)
Query: 3 SGGGPSRNRAASTS--SAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRK 60
SGGGP+RN A + +A++ S++S + S+ + QQQQQ QQQQ QQQ R
Sbjct: 6 SGGGPARNPAMGPAGRTASTSSAASPSSSSSSVQQQQQQQQQQQQQQQLASRQQQQQHRN 65
Query: 61 PDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQGV 120
D NE + AYQ G + G+MGGGNFAS PGSMQ PQQSR FF+ QQ Q+ + +Q
Sbjct: 66 SDTNENMFAYQPGGVQGMMGGGNFASSPGSMQMPQQSRNFFESPQQQQQQQQQGSSTQEG 125
Query: 121 EHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPAS-GKDQDMRMGNLKMQELI 179
+ Q NP+ QAY+Q+A+QAQ + A QQA++GM+G +S GKDQD RMG L MQ+L
Sbjct: 126 Q-QNFNPMQQAYIQFAMQAQHQKAQ-----QQARMGMVGSSSVGKDQDARMGMLNMQDL- 178
Query: 180 SMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIR 239
++Q QASSSK S +QF RGE+Q E QQ ++ K P+ QQ GQ M N+IR
Sbjct: 179 --NPSSQPQASSSKPSGDQFARGERQTESSSQQRNETKSHPQ---QQVGTGQLMPGNMIR 233
Query: 240 PMQAAQHQQSIQNAAGNQLAMAAQ---LQAWALERNIDLSQPANASLIAQLIPIMQSRIV 296
PMQA Q QQ + N NQLA A Q +QAWA ERNIDLS PANAS Q+ I+Q+R+
Sbjct: 234 PMQAPQAQQLVNNMGNNQLAFAQQWQAMQAWARERNIDLSHPANAS---QMAHILQARMA 290
Query: 297 ANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPTVSPSP 356
A KA E N+ + S +P+S Q +S + GENSPHANS+SD+SGQSGSAKAR +S
Sbjct: 291 AQQKAGEGNVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGS 350
Query: 357 LGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQ 416
ST+S +VN N FS GR+N + R V NG+P +P QTS N TP +DQ
Sbjct: 351 FASTSSPRMVNPAMN----PFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVLDQ 406
Query: 417 PLPVKNSSGP-ENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQRLGFT 475
K S GP E+ QMQ RQLN +P PS G +N+ S Q G TQ QQR GFT
Sbjct: 407 NASTKKSLGPAEHLQMQQPRQLNTPTPNLVAPSDTGPLSNS-SLQSGQGTQQAQQRSGFT 465
Query: 476 KHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVS 535
K QLHVLKAQILAFRRLKKGEG+LP ELL+AI PP LELQ Q+Q PA QDR S
Sbjct: 466 KQQLHVLKAQILAFRRLKKGEGSLPPELLQAISPPPLELQ---TQRQISPAIGKVQDRSS 522
Query: 536 GKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAP 594
K EDQ R LE GK++QA +SSN KEE GD + A++ Q + KE
Sbjct: 523 DKTGEDQARSLEC-GKESQAAASSNGPIFSKEEDNVGDTEVALTTGHSQLFQNLGKEATS 581
Query: 595 VVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQ 654
V KEEQQ V VKSDQ + + +SD AD+GK+V A D Q K P Q
Sbjct: 582 TDVATKEEQQTDVFPVKSDQGADSSTQKN-PRSDSTADKGKAV-----ASDGSQSKVPPQ 635
Query: 655 ATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGL 714
A + PKD +ARKY+GPLFDFPFFTRK DS GS A N++NNLTLAYD+KDL+ EEG
Sbjct: 636 ANSPQPPKDTASARKYYGPLFDFPFFTRKLDSYGS-ATANANNNLTLAYDIKDLICEEGA 694
Query: 715 EVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQ 774
E L KKR+++LKKI+G+LA NLERKRIRPDLVLRLQIE+KKLRL DLQSR+R+EVD+QQQ
Sbjct: 695 EFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQ 754
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDA 834
EIM+MPDR YRKFVRLCERQR+E+ RQV +QKA+REKQLK+I QWRKKLLEAHWAIRDA
Sbjct: 755 EIMSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWAIRDA 814
Query: 835 RTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAER 894
RTARNRGVAKYHE++LREFSKRKDD RNKRMEALKNNDVERYREMLLEQQT++PGDAAER
Sbjct: 815 RTARNRGVAKYHEKMLREFSKRKDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDAAER 874
Query: 895 YAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAG 954
YAVLSSFLTQTE+YL+KLG KITA KNQQEVEEAANAAA AARLQGLSEEEVR+AA CA
Sbjct: 875 YAVLSSFLTQTEDYLHKLGGKITATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATCAR 934
Query: 955 EEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLS 1014
EEV+IRNRF EMNAP++ SSVNKYY+LAHAVNE V+RQPSML+AGTLRDYQ+VGLQWMLS
Sbjct: 935 EEVVIRNRFTEMNAPKENSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLS 994
Query: 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP 1074
LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH WLP
Sbjct: 995 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLP 1054
Query: 1075 SVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133
SVSCIYYVG KDQRS+LFSQ V A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM
Sbjct: 1055 SVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1114
Query: 1134 KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPF 1193
KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP+VFDNRKAFHDWF+QPF
Sbjct: 1115 KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPF 1174
Query: 1194 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSA 1253
QKEGP HN +DDWLETEKKVI+IHRLHQILEPFMLRRRVEDVEGSLP KVS+VLRCRMSA
Sbjct: 1175 QKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSA 1234
Query: 1254 IQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1313
IQSA+YDWIKATGTLRVDP+DEK R QKNPIYQAK+Y+TLNNRCMELRK CNHPLLNYPY
Sbjct: 1235 IQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPY 1294
Query: 1314 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1373
F+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LVYRRI
Sbjct: 1295 FNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRI 1354
Query: 1374 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1433
DGTTSLEDRESAIVDFN D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDPDPNPKNEEQA
Sbjct: 1355 DGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQA 1414
Query: 1434 VARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1493
VARAHRIGQ REVKVIYMEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKDRYIGSIEGLI
Sbjct: 1415 VARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLI 1474
Query: 1494 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM 1553
RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSL EVNRM
Sbjct: 1475 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRM 1534
Query: 1554 IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGS 1613
IARSE+EVELFDQMDEEF W EEMT ++QVPKWLRAST+EVNAT+A+LSKKPSKN+L S
Sbjct: 1535 IARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSKKPSKNMLSSS 1594
Query: 1614 NIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFE 1672
N+ V G ERKRG PK KK NYKE++D+I YSE SS+ERN EEEG+I +F+
Sbjct: 1595 NLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGNEEEGDIRQFD 1653
Query: 1673 DDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRRLT 1732
DDE +GA+G +NK + + + PVC GYDY S + + N ++AGSSGSS S R
Sbjct: 1654 DDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSSGSSPESHRSK 1711
Query: 1733 QIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEG 1792
++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRDEG
Sbjct: 1712 EMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRDEG 1771
Query: 1793 EDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTD 1852
++EQVLQP IKRKRSIR+RPR T ER + ++ P + P Q+D Y ++LRT
Sbjct: 1772 DEEQVLQPTIKRKRSIRLRPRQTAERVD---GSEMPAAQ------PLQVDRSYRSKLRTV 1822
Query: 1853 TEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSR-ASLKTGRLNCMPGHTEDAAD 1911
+ +H SS R++P++K+A+ K +S K+GRLN ED A+
Sbjct: 1823 VD--SHSSRQD-----QSDSSSRLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAE 1875
Query: 1912 HFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI 1971
+E+WDG + SSN A+MS +IQ+RCK VISKLQRRI+KEG QIVP+LT+LWKRI
Sbjct: 1876 ASRETWDG--TSPISSSNAGARMSHIIQKRCKIVISKLQRRIDKEGQQIVPMLTNLWKRI 1933
Query: 1972 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEAR 2031
+ +GY +G NN+L+LR+ID RV+RLEY GVMEL SDVQ ML+GAMQFYGFSHEVRSEA+
Sbjct: 1934 Q-NGYAAGGVNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAK 1992
Query: 2032 KVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEP 2091
KVH+LFFDLLK++FPDTDFREAR+ALSF+G T VSTP+PR + Q KR K++NE E
Sbjct: 1993 KVHNLFFDLLKMSFPDTDFREARNALSFSGSAPTLVSTPTPRGAGISQGKRQKLVNEPET 2052
Query: 2092 GPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSP---HPGELVI 2148
PS PQ+ QR E+SRIRVQIPQKE++LG + S D+SP HPGELVI
Sbjct: 2053 EPSSPQRSQQR------ENSRIRVQIPQKETKLGGTT------SHTDESPILAHPGELVI 2100
Query: 2149 CKKKRKDREKSVVKPRS----VSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQHGWA 2204
CKKKRKDREKS K R+ P +GR ++SP G VP++ R Q Q W
Sbjct: 2101 CKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQ----QQRWP 2156
Query: 2205 NQPAQPANGGSG--AVGWANPVKRLRTDAGKRRPSQL 2239
NQP P N G+ +VGWANPVKRLRTD+GKRRPS L
Sbjct: 2157 NQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL 2193
|
ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust.
Identities = 308/842 (36%), Positives = 459/842 (54%), Gaps = 111/842 (13%)
Query: 751 IEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVE------LMRQVQT 804
IE + LRLL+ Q LR+ ++ ++ R R +RQ ++ + + Q
Sbjct: 646 IELRCLRLLEKQRSLRETINSVIPHSDSLAAGNLRLMFRNVKRQTMQEANLVLALAEKQK 705
Query: 805 SQKAMREKQ-----LKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDD 859
++ AMR+K+ L+SI RK ++ A+T R + + +H + +E KR +
Sbjct: 706 TEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKKRIER 765
Query: 860 DRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAA 919
+R++AL+ +D Y ++L D A+ + + L QT++YL L +
Sbjct: 766 SARQRLQALRADDEAAYLQLL---------DKAKDTRI-THLLKQTDQYLENLTRAVRIQ 815
Query: 920 KNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYY 979
++ + + +A L+ EE ++ Y+
Sbjct: 816 QSNIHSGNTSGKGSNSAELEAPISEEDKNL---------------------------DYF 848
Query: 980 SLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039
+AH ++E V QP + GTL+DYQ+ GL+WMLSLYNN LNGILADEMGLGKT+Q +A
Sbjct: 849 KVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAF 907
Query: 1040 IAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALK 1099
I YL+E K GP LIIVP + L NW E KW PSV I Y G R L SQ+ +
Sbjct: 908 ITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSN 967
Query: 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGT 1158
FNVL+TT+E+I+ DR LS++ W ++IIDE R+K+ +S L L Y Q RL+LTGT
Sbjct: 968 FNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGT 1027
Query: 1159 PLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218
PLQN+L ELW+LLN +LP++F++ K+F +WF+ PF G D L E+ ++II R
Sbjct: 1028 PLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG---GQDKIGLNEEEALLIIKR 1084
Query: 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 1278
LH++L PF+ RR +DVE LP KV V++C +S +Q +Y +K G L VD E K
Sbjct: 1085 LHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTG 1144
Query: 1279 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK---------DFLVKSCGKL 1329
+ K L N M+L+K CNHP + F D+ + D L ++ GK
Sbjct: 1145 I-----------KGLQNTVMQLKKICNHPFI----FEDVERAIDPSGTNVDLLWRAAGKF 1189
Query: 1330 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389
+LDRIL KL TGH+ L+F MT+++ I+E+YL+ + Y R+DG+T +DR S + F
Sbjct: 1190 ELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQF 1249
Query: 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449
N SD +IF+LS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ +EV+++
Sbjct: 1250 NDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRIL 1309
Query: 1450 YMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1509
+ I+ E+ + S QYK+D+ +VI
Sbjct: 1310 RL------ITEKSIEENILSRA---------------------------QYKLDLDGKVI 1336
Query: 1510 NAGRFDQRTTHEERRMTLETLL-HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMD 1568
AG+FD ++T EER L +LL HD + + + E+N +I+R+++E+ LF ++D
Sbjct: 1337 QAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELISRTDEELVLFKKLD 1396
Query: 1569 EE 1570
+E
Sbjct: 1397 KE 1398
|
Helicase. Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 272/640 (42%), Positives = 382/640 (59%), Gaps = 72/640 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YYS+AH ++E+V+ Q S++ GTL++YQI GL+W++SLYNN LNGILADEMGLGKT+Q +
Sbjct: 750 YYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 809
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097
+L+ YLM+ K GP+LIIVP + L NW E KW P+V + Y G+ R L +Q+ A
Sbjct: 810 SLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRA 869
Query: 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLT 1156
KFNVL+TTYE+++ D++ L+K+ WKY+IIDE RMK+ L + L+ Y RLLLT
Sbjct: 870 TKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLT 929
Query: 1157 GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1216
GTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++II
Sbjct: 930 GTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTG-----EKVELNEEETILII 984
Query: 1217 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 1276
RLH++L PF+LRR ++VE LP KV +++C MSA+Q +Y +++ G L D ++
Sbjct: 985 RRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKG 1044
Query: 1277 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF--------------L 1322
+ K L N ++LRK CNHP + F + + + L
Sbjct: 1045 KH-------GKGGAKALMNTIVQLRKLCNHPFM----FQHIEEKYCDHTGGHGVVSGPDL 1093
Query: 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382
+ GK +LDRIL KL+ T HRVLLF MT+ + I+E+YL WRQ Y R+DGTT EDR
Sbjct: 1094 YRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDR 1153
Query: 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442
+ FN+ SD F+FLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRIGQ
Sbjct: 1154 GELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1213
Query: 1443 KREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKI 1502
+ EV+V+ + V S+E I +YK+
Sbjct: 1214 RNEVRVLRLMTV--------------------------------NSVEERIL-AAARYKL 1240
Query: 1503 DMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1562
+M ++VI AG FDQ++T ER+ L+T+LH ++ +E ++VP + +N MIARSE+E+E
Sbjct: 1241 NMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIE 1300
Query: 1563 LFDQMDEE--------FGWIEEMTRYDQVPKWLRASTKEV 1594
+F +MD E E + ++P WL EV
Sbjct: 1301 IFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEV 1340
|
Transcriptional regulator. Act as coactivator, assisting one or more dedicated transcriptional activators of ANTC and BXC homeotic gene clusters. Can counteract the repressive effect of Polycomb protein. ATPase subunit of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 328/849 (38%), Positives = 466/849 (54%), Gaps = 127/849 (14%)
Query: 751 IEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCER-----QRVELMRQVQTS 805
+E KKLRL+ Q LR +V Q + + + R C R Q L ++
Sbjct: 199 VELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMS---CRRPKLVPQATRLTEVLERQ 255
Query: 806 QKAMREKQLKSISQWRKKLLEAHWAIRDART----AR----NRGVAKYHERILREFSKRK 857
Q++ RE++LK + + AH + RT AR NR V YH I +E +R
Sbjct: 256 QRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRA 315
Query: 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKIT 917
+ + +R++ALK ND E Y +++ D A+ + + L QT+ YL
Sbjct: 316 ERNAKQRLQALKENDEEAYLKLI---------DQAKDTRI-THLLRQTDHYL-------- 357
Query: 918 AAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNK 977
++ AAA ++Q A +E M R MN P D ++
Sbjct: 358 ------------DSLAAAVKVQQ------SQFGESAYDEDMDRR----MN-PEDDRKID- 393
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AH + E V QPS+L G L++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 394 YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTI 453
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097
+LI +L+E K GP L+IVP + L NW E +W PS+ I Y G R L QV
Sbjct: 454 SLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRH 513
Query: 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-RLLLT 1156
F VL+TTYE+I+ DR LS++ W Y+IIDE RMK+ +S L L Y R RL+LT
Sbjct: 514 SNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILT 573
Query: 1157 GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1216
GTPLQN+L ELW+LLN +LP +F++ K+F +WF+ PF G D L E+ +++I
Sbjct: 574 GTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTG---GQDKMELTEEESLLVI 630
Query: 1217 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 1276
RLH++L PF+LRR +DVE LP KV V+RC+MS +Q +Y +K G L V ED K
Sbjct: 631 RRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYV--EDAK 688
Query: 1277 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK---------DFLVKSCG 1327
R K I K L N M+L+K CNHP + F D+ + D L + G
Sbjct: 689 R--GKTGI------KGLQNTVMQLKKICNHPFV----FEDVERSIDPTGFNYDMLWRVSG 736
Query: 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387
K +LDRIL KL R+GHR+L+F MT++++I+E+YL +RQ Y R+DG+T +DR +
Sbjct: 737 KFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLG 796
Query: 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447
FN ++ +FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ +EV+
Sbjct: 797 VFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVR 856
Query: 1448 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADE 1507
+ + + +K +E+++ + QYK+D+ +
Sbjct: 857 IYRL--ITEK----------------SVEENILAR---------------AQYKLDIDGK 883
Query: 1508 VINAGRFDQRTTHEERRMTLETLLHDEERYQET-----VHDVPSLQEVNRMIARSEDEVE 1562
VI AG+FD ++T EER L +LL +E +E + D E+N ++AR +DE+
Sbjct: 884 VIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDD----DELNEILARGDDELR 939
Query: 1563 LFDQMDEEF 1571
LF QM E+
Sbjct: 940 LFKQMTEDL 948
|
Helicase. Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/607 (43%), Positives = 365/607 (60%), Gaps = 66/607 (10%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA++ERV +Q ++L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 706 YYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 765
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q+ +
Sbjct: 766 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS 825
Query: 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLT 1156
KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LLT
Sbjct: 826 GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 885
Query: 1157 GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1216
GTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++II
Sbjct: 886 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD-----LNEEETILII 940
Query: 1217 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 1276
RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 941 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 1000
Query: 1277 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF--------------- 1321
++ KTL N M+LRK CNHP + F + + F
Sbjct: 1001 KK-------GKGGAKTLMNTIMQLRKICNHPYM----FQHIEESFAEHLGYSNGVINGAE 1049
Query: 1322 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381
L ++ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT ED
Sbjct: 1050 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1109
Query: 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441
R + + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRIG
Sbjct: 1110 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1169
Query: 1442 QKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYK 1501
Q+ EV+V+ + V + E+++ + +YK
Sbjct: 1170 QQNEVRVLRLCTV------NSVEEKILAAA---------------------------KYK 1196
Query: 1502 IDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEV 1561
+++ +VI AG FDQ+++ ERR L+ +L EE +E + +N+MIAR E+E
Sbjct: 1197 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLNQMIARREEEF 1255
Query: 1562 ELFDQMD 1568
+LF +MD
Sbjct: 1256 DLFMRMD 1262
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 267/607 (43%), Positives = 365/607 (60%), Gaps = 66/607 (10%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA++ERV +Q ++L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 701 YYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 760
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q+ +
Sbjct: 761 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRS 820
Query: 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLT 1156
KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LLT
Sbjct: 821 GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 880
Query: 1157 GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1216
GTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++II
Sbjct: 881 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD-----LNEEETILII 935
Query: 1217 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 1276
RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 936 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 995
Query: 1277 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF--------------- 1321
++ KTL N M+LRK CNHP + F + + F
Sbjct: 996 KK-------GKGGAKTLMNTIMQLRKICNHPYM----FQHIEESFAEHLGYSNGVINGAE 1044
Query: 1322 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381
L ++ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT ED
Sbjct: 1045 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1104
Query: 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441
R + + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRIG
Sbjct: 1105 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1164
Query: 1442 QKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYK 1501
Q+ EV+V+ + V + E+++ + +YK
Sbjct: 1165 QQNEVRVLRLCTV------NSVEEKILAAA---------------------------KYK 1191
Query: 1502 IDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEV 1561
+++ +VI AG FDQ+++ ERR L+ +L EE +E + +N+MIAR E+E
Sbjct: 1192 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLNQMIARREEEF 1250
Query: 1562 ELFDQMD 1568
+LF +MD
Sbjct: 1251 DLFMRMD 1257
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STH1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 295/793 (37%), Positives = 442/793 (55%), Gaps = 102/793 (12%)
Query: 788 VRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHE 847
VRL E + + + + ++ + +++ SI + K+ W+ ++ R A H
Sbjct: 301 VRLAEELERQQLLEKRKKERNLHLQKINSIIDFIKERQSEQWSRQERCFQFGRLGASLHN 360
Query: 848 RILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEE 907
++ ++ KR + +R+ ALK+ND E Y ++L QT + ++ L QT
Sbjct: 361 QMEKDEQKRIERTAKQRLAALKSNDEEAYLKLL--DQT--------KDTRITQLLRQTNS 410
Query: 908 YLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMN 967
+L L + A +N+ ++ +Q +++EE
Sbjct: 411 FLDSLSEAVRAQQNEAKI-------LHGEEVQPITDEE---------------------- 441
Query: 968 APRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADE 1027
R+ + YY +AH + E++ +QPS+L GTL++YQ+ GL+WM+SLYNN LNGILADE
Sbjct: 442 --REKTD---YYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADE 496
Query: 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQ 1087
MGLGKT+Q ++LI YL E K + GP L+IVP + + NW E KW PS++ I Y G +Q
Sbjct: 497 MGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQ 556
Query: 1088 RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR- 1146
R L Q+ F+VL+TTYE+I+ D+S LSK DW ++IIDE RMK+ +S L+ +
Sbjct: 557 RHSLQHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHY 616
Query: 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1206
YR + RL+LTGTPLQN+L ELW+LLN +LP++F++ K F DWF+ PF G +
Sbjct: 617 YRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLEL-- 674
Query: 1207 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1266
E+ ++II RLH++L PF+LRR ++VE LP KV V++C++S +Q +Y +
Sbjct: 675 -TEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHN 733
Query: 1267 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL--------- 1317
L V E K I K LNN+ M+LRK CNHP + F ++
Sbjct: 734 ALFVGAGTEG--ATKGGI------KGLNNKIMQLRKICNHPFV----FDEVEGVVNPSRG 781
Query: 1318 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1377
+ D L + GK +LDR+L K + +GHRVL+F MT+++DI+E++L+ + L Y R+DG+T
Sbjct: 782 NSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGST 841
Query: 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1437
E+R + FN+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP + QA RA
Sbjct: 842 KTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRA 901
Query: 1438 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1497
HRIGQK EV+++ + T D S+E +I
Sbjct: 902 HRIGQKNEVRILRL-------------------ITTD-------------SVEEVILERA 929
Query: 1498 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1557
Q K+D+ +VI AG+FD ++T EE+ L L+ E + E+N +ARS
Sbjct: 930 MQ-KLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNRDDDDKAELDDDELNDTLARS 988
Query: 1558 EDEVELFDQMDEE 1570
DE LFD++D+E
Sbjct: 989 ADEKILFDKIDKE 1001
|
Catalytic component of the chromatin structure-remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. RSC is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodeling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signaling pathway, for organization of the cellular cytoskeleton. This subunit is the essential ATPase of the complex. It is a DNA translocase capable of nucleosome remodeling. Required for full expression of early meiotic genes. Essential for mitotic growth and repression of CHA1 expression. Also involved in G2 phase control. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 278/677 (41%), Positives = 377/677 (55%), Gaps = 107/677 (15%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 847
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ +
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEETI 962
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 963 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1022
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF------------ 1321
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1023 EKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIVQ 1071
Query: 1322 ---LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1072 GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTK 1131
Query: 1379 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAH
Sbjct: 1132 AEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAH 1191
Query: 1439 RIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1498
RIGQ+ EV+V+ + V+ + E LA
Sbjct: 1192 RIGQQNEVRVLRL-CTVNSVE----------------EKILAAA---------------- 1218
Query: 1499 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH---------------- 1542
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRHCSTGSGSASFAHTAPP 1277
Query: 1543 -----------------DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIE--------EM 1577
+VP + VN+MIAR E+E +LF +MD + E +
Sbjct: 1278 PAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRL 1337
Query: 1578 TRYDQVPKWLRASTKEV 1594
D++P W+ EV
Sbjct: 1338 MEEDELPSWIIKDDAEV 1354
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues (By similarity). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust.
Identities = 273/644 (42%), Positives = 374/644 (58%), Gaps = 74/644 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 720 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 779
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 780 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 839
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 840 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 899
Query: 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ +
Sbjct: 900 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEETI 954
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 955 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1014
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF------------ 1321
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1015 EKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIVQ 1063
Query: 1322 ---LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1064 GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTK 1123
Query: 1379 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAH
Sbjct: 1124 AEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAH 1183
Query: 1439 RIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1498
RIGQ+ EV+V+ + V + E+++ +
Sbjct: 1184 RIGQQNEVRVLRLCTV------NSVEEKILAAA--------------------------- 1210
Query: 1499 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSE 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR E
Sbjct: 1211 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARHE 1269
Query: 1559 DEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1594
+E +LF +MD + E + D++P W+ EV
Sbjct: 1270 EEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1313
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-fOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/644 (42%), Positives = 373/644 (57%), Gaps = 74/644 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 847
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ +
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEETI 962
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 963 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1022
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF------------ 1321
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1023 EKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIVQ 1071
Query: 1322 ---LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1072 GLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTK 1131
Query: 1379 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAH
Sbjct: 1132 AEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAH 1191
Query: 1439 RIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 1498
RIGQ+ EV+V+ + V+ + E LA
Sbjct: 1192 RIGQQNEVRVLRL-CTVNSVE----------------EKILAAA---------------- 1218
Query: 1499 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSE 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR E
Sbjct: 1219 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARHE 1277
Query: 1559 DEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1594
+E +LF +MD + E + D++P W+ EV
Sbjct: 1278 EEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1321
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2239 | ||||||
| 255541636 | 2248 | Chromo domain protein, putative [Ricinus | 0.995 | 0.991 | 0.779 | 0.0 | |
| 359489634 | 2263 | PREDICTED: ATP-dependent helicase BRM-li | 0.994 | 0.984 | 0.781 | 0.0 | |
| 224064045 | 2222 | chromatin remodeling complex subunit [Po | 0.968 | 0.975 | 0.775 | 0.0 | |
| 147789690 | 2238 | hypothetical protein VITISV_024679 [Viti | 0.982 | 0.983 | 0.770 | 0.0 | |
| 356560792 | 2229 | PREDICTED: ATP-dependent helicase BRM-li | 0.970 | 0.975 | 0.730 | 0.0 | |
| 449432144 | 2247 | PREDICTED: ATP-dependent helicase BRM-li | 0.989 | 0.985 | 0.731 | 0.0 | |
| 356520394 | 2226 | PREDICTED: ATP-dependent helicase BRM-li | 0.970 | 0.975 | 0.728 | 0.0 | |
| 449480215 | 2251 | PREDICTED: LOW QUALITY PROTEIN: ATP-depe | 0.991 | 0.985 | 0.730 | 0.0 | |
| 356568407 | 2222 | PREDICTED: ATP-dependent helicase BRM-li | 0.958 | 0.965 | 0.715 | 0.0 | |
| 356531981 | 2222 | PREDICTED: ATP-dependent helicase BRM-li | 0.957 | 0.964 | 0.710 | 0.0 |
| >gi|255541636|ref|XP_002511882.1| Chromo domain protein, putative [Ricinus communis] gi|223549062|gb|EEF50551.1| Chromo domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3397 bits (8809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1759/2257 (77%), Positives = 1950/2257 (86%), Gaps = 27/2257 (1%)
Query: 1 MQSGGG-PSRNRAAS---TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQ 56
MQSGGG PSR A ++S+A+ SSSS+ ++P LGFDS+QQ QHQQ RQ Q Q
Sbjct: 1 MQSGGGGPSRVGPAGRAASTSSAASPSSSSSAASPQLGFDSVQQHHQHQQLGSRQALQHQ 60
Query: 57 ILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNR 116
+LRKP+GNEA+LAYQ G+ G++GG NFA PGSMQ PQQSRKFFD AQQ SQ+ QNR
Sbjct: 61 LLRKPEGNEALLAYQAGAFQGVIGGSNFAPSPGSMQMPQQSRKFFDLAQQQNSSQDGQNR 120
Query: 117 SQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMGNLKMQ 176
+Q VE Q+LNPVHQAY+Q+A Q QQKSA V+QSQQQAK+GMLGPA+GKDQ+MRMGN KMQ
Sbjct: 121 NQAVEQQVLNPVHQAYLQFAFQ-QQKSALVMQSQQQAKMGMLGPATGKDQEMRMGNSKMQ 179
Query: 177 ELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAAN 236
EL S+Q+A+QAQASSSKNSSE F RGEKQ+EQ QQ +Q+ E KPP+Q GQ M AN
Sbjct: 180 ELTSIQAASQAQASSSKNSSENFTRGEKQVEQGQQLAPEQRNEQKPPTQPPGVGQAMPAN 239
Query: 237 IIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQLIPIMQS 293
++RPMQA Q QQSIQN NQLAMAAQLQA WALERNIDLS PANA+L+AQLIP+MQS
Sbjct: 240 VVRPMQAPQAQQSIQNMVNNQLAMAAQLQAMQAWALERNIDLSLPANANLMAQLIPLMQS 299
Query: 294 RIVANHKANESNMGAPSSPVPVS--KQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPT 351
R+ A KANESN GA +SPVPVS K QV SP +A E+SPHANSSSDVSGQSG KAR T
Sbjct: 300 RMAAQQKANESNAGAQASPVPVSVSKHQVASPPVASESSPHANSSSDVSGQSGPPKARQT 359
Query: 352 VSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMT 411
V P GS++++ +VN+ N++++QQ + R+NQ P R V +GNG+P +HP Q S NM+
Sbjct: 360 VPSGPFGSSSNSGIVNSANSLAMQQLAFQNRENQAPPRTGVILGNGMPSMHPSQLSANMS 419
Query: 412 PGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQ 470
G DQ +P KN+ + PE QMQ+L+Q+NRSSPQSA S+DG S+N+ SSQG + QM Q
Sbjct: 420 QGGDQNMPAKNAINSPETLQMQHLKQMNRSSPQSAGLSNDGGSSNHNSSQGTPSVQMAQN 479
Query: 471 RLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNN 530
R+GFTK QLHVLKAQILAFRRLKKGEGTLPQELLRAI + + QQQFLPA +N
Sbjct: 480 RVGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAI---APPPLELQLQQQFLPAGGSN 536
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
QDR GKI EDQ +HLESN K++QA+ S N Q+ KEEA AG +K VS K
Sbjct: 537 QDRSGGKILEDQAKHLESNEKNSQAMPSMNGQNAAKEEAVAGVEKPTVSASNIEGPTAAK 596
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVK 650
+P V KEEQQ VKSDQEVE L +T +SD AD+GK+VAPQV DAVQ K
Sbjct: 597 DPTTSVAVRKEEQQTATFPVKSDQEVERSLQKTPVRSDVTADKGKAVAPQVPVSDAVQAK 656
Query: 651 KPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLS 710
KPAQ + A QPKDVG+ARKYHGPLFDFPFFTRKHDS+GS+ M+N++NNL LAYDVKDLL
Sbjct: 657 KPAQTSVAPQPKDVGSARKYHGPLFDFPFFTRKHDSIGSSGMINTNNNLILAYDVKDLLF 716
Query: 711 EEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVD 770
EEGLEVL KKRSENLKKI+G+LAVNLERKRIRPDLVLRLQIE+KKL+LLDLQ+RLRDEVD
Sbjct: 717 EEGLEVLNKKRSENLKKINGLLAVNLERKRIRPDLVLRLQIEEKKLKLLDLQARLRDEVD 776
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
QQQQEIMAMPDR YRKFVRLCERQR+E RQVQ SQKAMR+KQLKSI QWRKKLLEAHW
Sbjct: 777 QQQQEIMAMPDRPYRKFVRLCERQRMEQARQVQASQKAMRDKQLKSIFQWRKKLLEAHWG 836
Query: 831 IRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD 890
IRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT+I GD
Sbjct: 837 IRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTNIEGD 896
Query: 891 AAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAA 950
AAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAA AARLQGLSEEEVR AA
Sbjct: 897 AAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAATAARLQGLSEEEVRVAA 956
Query: 951 ACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQ 1010
ACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAVNERV+RQPSMLRAGTLRDYQ+VGLQ
Sbjct: 957 ACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVNERVIRQPSMLRAGTLRDYQLVGLQ 1016
Query: 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070
WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH
Sbjct: 1017 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1076
Query: 1071 KWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1129
WLPSVSCIYYVG+KDQRS+LFSQ V+A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE
Sbjct: 1077 NWLPSVSCIYYVGSKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1136
Query: 1130 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF 1189
AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF
Sbjct: 1137 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF 1196
Query: 1190 SQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1249
S+PFQKEGP H+A+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC
Sbjct: 1197 SKPFQKEGPAHDAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1256
Query: 1250 RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309
RMSAIQSA+YDWIK+TGTLRVDPEDEKRR QKNPIYQ KVYKTLNNRCMELRK CNHPLL
Sbjct: 1257 RMSAIQSAVYDWIKSTGTLRVDPEDEKRRAQKNPIYQPKVYKTLNNRCMELRKACNHPLL 1316
Query: 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1369
NYPYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LV
Sbjct: 1317 NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLV 1376
Query: 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1429
YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN
Sbjct: 1377 YRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1436
Query: 1430 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSI 1489
EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGT+DLEDDLAGKDRY+GSI
Sbjct: 1437 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTIDLEDDLAGKDRYMGSI 1496
Query: 1490 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1549
E LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH+VPSLQE
Sbjct: 1497 ESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHNVPSLQE 1556
Query: 1550 VNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNI 1609
VNRMIARSEDEVELFDQMDE+ W EEMT YDQVPKWLRAST++VNA IANLSKKPSKNI
Sbjct: 1557 VNRMIARSEDEVELFDQMDEDLDWTEEMTSYDQVPKWLRASTRDVNAAIANLSKKPSKNI 1616
Query: 1610 LFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEI 1668
L+ S++G++S E+ETERKRG PKGKK PNYKEVDD+ GEYSEASSDERNGY EEEGEI
Sbjct: 1617 LYASSVGMESSEVETERKRGRPKGKKSPNYKEVDDDNGEYSEASSDERNGYCAHEEEGEI 1676
Query: 1669 GEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNS 1728
EFEDDE SGAVGAP NKDQSE+DGP C+GGY+Y R S + R+NH++EEAGSSGSSS++
Sbjct: 1677 REFEDDESSGAVGAPPINKDQSEDDGPTCDGGYEYPRASTSARDNHILEEAGSSGSSSDN 1736
Query: 1729 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHD 1788
RR+T+IVSPVS QKFGSLSAL+ARPGS+SK++PDELEEGEIAVSGDSH+DHQQSGSW HD
Sbjct: 1737 RRITRIVSPVSSQKFGSLSALDARPGSISKKLPDELEEGEIAVSGDSHLDHQQSGSWIHD 1796
Query: 1789 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1848
R+EGEDEQVLQPKIKRKRSIR+RPRHT+ERP+E+S + + RGD+ LLPFQ D+KY AQ
Sbjct: 1797 REEGEDEQVLQPKIKRKRSIRLRPRHTMERPDEKSGIE--VQRGDACLLPFQGDHKYQAQ 1854
Query: 1849 LRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTED 1908
LRTD EMK GE N RHDQS+ SSK+RR +PSR+IAN K AS K+ RL+ ED
Sbjct: 1855 LRTDAEMKGFGEPNPSRHDQSD-SSKNRRTIPSRRIANTSKLHASPKSSRLHMQAAPPED 1913
Query: 1909 AADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW 1968
AA+H +ESWDGK+ NASGSS +KMSDVIQRRCKNVISKLQRRI+KEG IVP+LTDLW
Sbjct: 1914 AAEHSRESWDGKVTNASGSSVLGSKMSDVIQRRCKNVISKLQRRIDKEGQHIVPVLTDLW 1973
Query: 1969 KRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRS 2028
KR+E+SGY+SGAGNN+LDLRKI+ RVDRLEYNGVMELV DVQFMLKGAMQFY FSHE RS
Sbjct: 1974 KRMESSGYMSGAGNNLLDLRKIETRVDRLEYNGVMELVVDVQFMLKGAMQFYTFSHEARS 2033
Query: 2029 EARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINE 2088
EARKVHDLFFD+LKIAFPDTDFREAR+ALSF+ PLSTS S PSPRQ VGQSKRH++INE
Sbjct: 2034 EARKVHDLFFDILKIAFPDTDFREARNALSFSNPLSTSSSAPSPRQAAVGQSKRHRLINE 2093
Query: 2089 MEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSP-HPGELV 2147
+EP KP QRGS+P +D+R++V +P KE+R G+GSGS+REQ Q DDSP HPGELV
Sbjct: 2094 VEPDNGSAHKPIQRGSIPSGDDTRVKVHLP-KETRHGTGSGSTREQYQQDDSPLHPGELV 2152
Query: 2148 ICKKKRKDREKSVVKPR-SVSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQHGWANQ 2206
ICKKKRKDR+KS+ K R SGPVSPPS+ R I SP G ++ R +QQ HQ GW NQ
Sbjct: 2153 ICKKKRKDRDKSMAKSRPGSSGPVSPPSMARTITSPVQGSASRETRMSQQNPHQQGWGNQ 2212
Query: 2207 PAQPANG----GSGAVGWANPVKRLRTDAGKRRPSQL 2239
P QPAN G G+VGWANPVKRLRTDAGKRRPS L
Sbjct: 2213 P-QPANNGRGGGGGSVGWANPVKRLRTDAGKRRPSHL 2248
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489634|ref|XP_002276245.2| PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3383 bits (8773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1778/2275 (78%), Positives = 1950/2275 (85%), Gaps = 48/2275 (2%)
Query: 1 MQSGGGPSRNRAAS------TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQ 54
MQSGGGP RN A ++S+ASPSSSSSAVSTPHLGFDS+QQQQQ QQQQ RQ Q
Sbjct: 1 MQSGGGPGRNPAVGPPGRATSTSSASPSSSSSAVSTPHLGFDSIQQQQQQQQQQSRQSLQ 60
Query: 55 QQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHA---ISQ 111
QQ+LRKP+GNEA+LAY G L G+MGGGNFAS SMQ PQQ RKF D AQQH I +
Sbjct: 61 QQLLRKPEGNEALLAYPGGGLQGVMGGGNFASSSSSMQLPQQPRKFIDLAQQHGASHIRE 120
Query: 112 ESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
++QN+SQGVE +LNPVHQAY+QYA QA QKSA +Q QQQAK+GM+GP S KDQD RM
Sbjct: 121 DNQNKSQGVEQPVLNPVHQAYLQYAFQAAHQKSALGMQPQQQAKMGMVGPPSWKDQDARM 180
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GNLKMQ+LIS+Q+ANQAQASSSK +E + RGEKQMEQ Q +SDQ+ E KPP+ T G
Sbjct: 181 GNLKMQDLISIQAANQAQASSSKKPAEHYARGEKQMEQVQAPISDQRSESKPPTMPTAVG 240
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQL 287
Q M N+ RPMQ+ Q+QQSIQN A NQLA+AAQLQA WALERNIDLS PANA+L+AQL
Sbjct: 241 QLMPGNVTRPMQSVQNQQSIQNMANNQLAVAAQLQAMQAWALERNIDLSLPANANLMAQL 300
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
IP+MQ+R+V K NESNMGA SPV KQQVTSP +A ENSPH NSSSDVSGQSGSAK
Sbjct: 301 IPLMQTRMVTQPKPNESNMGAQPSPVQGPKQQVTSPPVASENSPHGNSSSDVSGQSGSAK 360
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR TV PSP GS +AA+VNN NNI +QQFSV GR++QVP RQ V IGNG+ P+HPPQ S
Sbjct: 361 ARQTVPPSPFGSNPNAAIVNNTNNIPVQQFSVQGRESQVPPRQSVVIGNGMSPMHPPQPS 420
Query: 408 LNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
+NM+ GVD PL KN+ SG E+ QMQYLRQLNRSSPQSA+P +DG N++ SQGG Q
Sbjct: 421 VNMSQGVDHPLHAKNTLSGQESLQMQYLRQLNRSSPQSAVPPNDGGLGNHYQSQGGPLPQ 480
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
+PQQR GFTK QLHVLKAQILAFRRLKKGEGTLPQELLR+I PP LE Q QQ FLP+
Sbjct: 481 VPQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIAPPPLESQ---LQQAFLPS 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ-GM 585
NQD+ +GK ED R LESN KD+QAV S+N + KEEA+AGDDKA S V G
Sbjct: 538 TAINQDKSAGKNVEDHGRQLESNEKDSQAVPSTNGHNFSKEEAFAGDDKATPSTVHMPGA 597
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V KEP PV+ GKEE Q SVKSDQE E G+ +T +SDF DRGK+VAPQV D
Sbjct: 598 PTVMKEPIPVLSAGKEEPQTTAFSVKSDQEFERGIQKTPIRSDFAPDRGKAVAPQVGVPD 657
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
++QVKKP Q ++ Q KD G+ RKYHGPLFDFPFFTRKHDS GS MVN+++NLTLAYDV
Sbjct: 658 SLQVKKPVQTSSTPQQKDAGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNSNLTLAYDV 717
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEG+EVL KKR+ENLKKISG+LAVNLERKRIRPDLVLRLQIE++KLRLLDLQ+RL
Sbjct: 718 KDLLFEEGMEVLNKKRTENLKKISGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARL 777
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDEVDQQQQEIMAMPDR YRKFVRLCERQR+ELMRQVQ SQKAMREKQLKSI QWRKKLL
Sbjct: 778 RDEVDQQQQEIMAMPDRPYRKFVRLCERQRMELMRQVQVSQKAMREKQLKSIFQWRKKLL 837
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 838 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 897
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
SIPGDAAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAAAAAR QGLSEEE
Sbjct: 898 SIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARAQGLSEEE 957
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AA CAGEEVMIRNRF+EMNAP++ SSVNKYY+LAHAVNERVMRQPSMLRAGTLRDYQ
Sbjct: 958 VRTAATCAGEEVMIRNRFIEMNAPKESSSVNKYYTLAHAVNERVMRQPSMLRAGTLRDYQ 1017
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1018 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1077
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1124
KSELH WLPSVSCIYYVG KDQRS+LFSQ V A+KFNVLVTTYEFIMYDRSKLSKVDWKY
Sbjct: 1078 KSELHNWLPSVSCIYYVGGKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKY 1137
Query: 1125 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1184
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1138 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1197
Query: 1185 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1244
FHDWFS+PFQKEGPTHNA+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1198 FHDWFSKPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1257
Query: 1245 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304
IVLRC+MSAIQ AIYDWIK+TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK C
Sbjct: 1258 IVLRCKMSAIQGAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKAC 1317
Query: 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1364
NHPLLNYPYF+D SKDFLV+SCGK+WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1318 NHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1377
Query: 1365 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1424
WR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIRAAGRGLNLQSADTV+IYDPD
Sbjct: 1378 WRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPD 1437
Query: 1425 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1484
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKISSHQKEDE RSGGTVD EDDLAGKDR
Sbjct: 1438 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGGTVDSEDDLAGKDR 1497
Query: 1485 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1544
YIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1498 YIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1557
Query: 1545 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1604
PSLQEVNRMIARSEDEVELFDQMDEE WIE+MTRYDQVPKWLRAST++VN +ANLSKK
Sbjct: 1558 PSLQEVNRMIARSEDEVELFDQMDEELNWIEDMTRYDQVPKWLRASTRDVNIAVANLSKK 1617
Query: 1605 PSKNILFGSNIGVDSGEI------ETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1657
PSKN F +NIG++S E +TERKRG PKGK P Y+E+DDE GE+SEASSDERN
Sbjct: 1618 PSKNTFFAANIGLESSEKGSDLSPKTERKRGRPKGK--PVYRELDDENGEFSEASSDERN 1675
Query: 1658 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1717
GY EEEGEIGEFED+E+SGAVGA SNKDQSEEDG +C+GGY+YLR E+TRN H+++
Sbjct: 1676 GYSAHEEEGEIGEFEDEEFSGAVGAQPSNKDQSEEDGRICDGGYEYLRALESTRNKHILD 1735
Query: 1718 EAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH 1776
EAGSSGSSS+SRRLTQ+VSP +S +KFGSLSAL+ARP SLSKR+PDELEEGEIAVSGDSH
Sbjct: 1736 EAGSSGSSSDSRRLTQMVSPSISSRKFGSLSALDARPSSLSKRLPDELEEGEIAVSGDSH 1795
Query: 1777 MDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSS 1835
MDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPRHTVERPEE+S + + L RGDSS
Sbjct: 1796 MDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRIRPRHTVERPEEKSSNEKSSLQRGDSS 1855
Query: 1836 LLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1895
LP Q+D+KY AQLR+D E K GESN+ +HDQS+ S KSRRNLPSRKI N K AS K
Sbjct: 1856 QLPMQVDHKYEAQLRSDPEAKLFGESNAFKHDQSDSSLKSRRNLPSRKIGNTSKLHASPK 1915
Query: 1896 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1955
+G+LNCM ED A+H +E WDGK+ N G +M +++QR+CKNVISKLQRRI+K
Sbjct: 1916 SGKLNCMSARAEDVAEHSREGWDGKVMNTGG-----PRMPEIMQRKCKNVISKLQRRIDK 1970
Query: 1956 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015
EGHQIVPLLTD WKR+E SGY+SG GNNILDLRKIDQR+DRLEY GVMELV DVQ MLK
Sbjct: 1971 EGHQIVPLLTDWWKRVENSGYISGPGNNILDLRKIDQRIDRLEYIGVMELVFDVQQMLKN 2030
Query: 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQT 2075
+MQ+YG SHEVR EARKVH+LFF++LKIAFPDTDFREAR+A+SF+GP+ST S PSPRQ
Sbjct: 2031 SMQYYGLSHEVRVEARKVHELFFNILKIAFPDTDFREARNAISFSGPVSTPASAPSPRQA 2090
Query: 2076 TVGQSKRHKIINEMEPGPSPPQKPPQRG-------SVPVSEDSRIRVQIPQKESRLGSGS 2128
VGQ KRHK INE+EP PSPP K RG + SED+R + I QKESRLGS S
Sbjct: 2091 AVGQGKRHKPINEVEPDPSPPPKQLLRGAAAAAAAAAAASEDTRAKSHISQKESRLGS-S 2149
Query: 2129 GSSREQSQPDDSPHPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKSPGLGLV 2187
S + P + HPG+LVI KKKRKDREKS KPRS SGPVSPPS+GR+I+SPG G +
Sbjct: 2150 SSRDQDDSPLLT-HPGDLVISKKKRKDREKSAAKPRSGSSGPVSPPSMGRSIRSPGPGSM 2208
Query: 2188 PKDMRHTQQTTHQHGWANQPAQPAN---GGSGAVGWANPVKRLRTDAGKRRPSQL 2239
KD R TQQ THQ WA+QPAQ AN GG G VGWANPVKR+RTDAGKRRPS L
Sbjct: 2209 QKDGRSTQQATHQQAWASQPAQQANGGSGGGGTVGWANPVKRMRTDAGKRRPSHL 2263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064045|ref|XP_002301364.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222843090|gb|EEE80637.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3365 bits (8724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1720/2218 (77%), Positives = 1892/2218 (85%), Gaps = 50/2218 (2%)
Query: 33 LGFDSLQQQQQHQQQQQRQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQ 92
LGFDS+QQQQQ +Q QQQ+LRKP+GNEA+LAYQ G+L G+ G NFAS PGSMQ
Sbjct: 44 LGFDSVQQQQQQPRQAL----QQQLLRKPEGNEALLAYQAGALQGVTVGNNFASSPGSMQ 99
Query: 93 PPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQ 151
PQQSR+FFD A+QH SQ+ QNR+QGVE Q LNP+ QAY+QYA QA QQKSA +QSQQ
Sbjct: 100 TPQQSRQFFDLARQHGSSQDGQNRNQGVEQQALNPMQQAYLQYAFQAAQQKSALAMQSQQ 159
Query: 152 QAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQ 211
QAK+GMLGP +GKDQD+RMGNLKMQEL+SMQ+ANQAQASSSKNSS+ F R EKQ+EQ Q
Sbjct: 160 QAKIGMLGPTAGKDQDIRMGNLKMQELMSMQAANQAQASSSKNSSDHFSRSEKQVEQGQH 219
Query: 212 QVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WA 268
SDQ+ E K P Q T GQ M AN+ RPMQA Q +IQN A N LAM AQLQA WA
Sbjct: 220 LASDQRNEQKSPLQPTATGQLMPANVTRPMQAPQ---TIQNMANNHLAMTAQLQAIQAWA 276
Query: 269 LERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGE 328
LERNIDLSQPAN +L+AQLIP MQ+R+ A KANESN GA SS + VSK QV SP+IA E
Sbjct: 277 LERNIDLSQPANVNLMAQLIPFMQARMAAQLKANESNPGAQSSHLLVSKPQVASPSIASE 336
Query: 329 NSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPS 388
+SP ANSSSDVSGQSG+AKAR TV P GST+S +VNN +N+++QQ + H R+NQ P
Sbjct: 337 SSPRANSSSDVSGQSGTAKARQTVPSGPFGSTSSGGMVNNPSNLAMQQQAFHSRENQAPP 396
Query: 389 RQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIP 447
RQ +GNG+P N GVDQ LP KN+ + E SQ + RQLNRSSPQSA P
Sbjct: 397 RQTAVLGNGMPA--------NTGQGVDQILPSKNALNSSETSQARQFRQLNRSSPQSAGP 448
Query: 448 SSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
S++G S N FSSQGG A QM QQR GFTK Q HVLKAQILAFRRLKKGEGTLPQELLRAI
Sbjct: 449 STEGGSGNRFSSQGGPAVQMAQQRTGFTKQQSHVLKAQILAFRRLKKGEGTLPQELLRAI 508
Query: 508 VPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKE 567
+ + QQQ LPA +NQDR GKI E+Q H ESN KD QA+ S N Q++ KE
Sbjct: 509 ---APPPLELQLQQQLLPAGGSNQDRPGGKIPEEQASHPESNDKDLQAMPSMNGQNVSKE 565
Query: 568 EAYAGDDKAAVSPVG-QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ 626
E + GD+KAAVS + Q AV KEP P+V GKEEQQ SVKSDQE E GL +
Sbjct: 566 EVFTGDEKAAVSTINMQKAPAVMKEPMPLVASGKEEQQTATFSVKSDQESEHGLQKAPVI 625
Query: 627 SDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDS 686
SD +DRGK VAPQ A DA Q KKPAQ +T Q KD G+ RKYHGPLFDFPFFTRKHDS
Sbjct: 626 SDLASDRGKGVAPQFPASDAAQAKKPAQVSTVPQTKDSGSTRKYHGPLFDFPFFTRKHDS 685
Query: 687 VGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLV 746
VGST +VN++NNLTLAYDVKDLL EEG+E+L +KR ENLKKI+G+LAVNLERKRIRPDLV
Sbjct: 686 VGSTGIVNTNNNLTLAYDVKDLLFEEGVEMLTRKRLENLKKINGLLAVNLERKRIRPDLV 745
Query: 747 LRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
LRLQIE+KKL+LLDLQ+RLRDEVDQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ
Sbjct: 746 LRLQIEEKKLKLLDLQARLRDEVDQQQQEIMAMPDRLYRKFVRLCERQRMELTRQVQASQ 805
Query: 807 KAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRME 866
KA+REKQLKSI QWRKKLLE+HWAIRD+RTARNRGVAKYHER+LREFSKRKDDDRNKRME
Sbjct: 806 KAIREKQLKSIMQWRKKLLESHWAIRDSRTARNRGVAKYHERMLREFSKRKDDDRNKRME 865
Query: 867 ALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVE 926
ALKNNDVERYREMLLEQQTSI GDA+ERYAVLSSFLTQTEEYL+KLG KITA KNQQE
Sbjct: 866 ALKNNDVERYREMLLEQQTSISGDASERYAVLSSFLTQTEEYLHKLGGKITATKNQQE-- 923
Query: 927 EAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVN-KYYSLAHAV 985
GLSEEEVR+AAAC EEVMIRNRF+EMNAPRD SSVN +YY+LAHAV
Sbjct: 924 -------------GLSEEEVRAAAACTSEEVMIRNRFMEMNAPRDSSSVNNRYYNLAHAV 970
Query: 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
NERV+RQPSMLR GTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME
Sbjct: 971 NERVIRQPSMLRTGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1030
Query: 1046 FKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLV 1104
FKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQR++LFSQ V+A+KFNVLV
Sbjct: 1031 FKGNYGPHLIIVPNAVLVNWKSELHSWLPSVSCIYYVGGKDQRAKLFSQEVSAMKFNVLV 1090
Query: 1105 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 1164
TTYEFIMYDR+KLSK+DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL
Sbjct: 1091 TTYEFIMYDRTKLSKLDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 1150
Query: 1165 KELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224
KELWSLLNLLLPEVFDNRKAFHDWFS+PFQ+E P H+ +DDWLETEKKVIIIHRLHQILE
Sbjct: 1151 KELWSLLNLLLPEVFDNRKAFHDWFSKPFQREAPVHDGEDDWLETEKKVIIIHRLHQILE 1210
Query: 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI 1284
PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS IYDWIK+TGT+RVDPEDEKRRVQKNP
Sbjct: 1211 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSTIYDWIKSTGTIRVDPEDEKRRVQKNPA 1270
Query: 1285 YQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGH 1344
YQAKVY+TLNNRCMELRKTCNHPLLNYPYF+DLSKDFLVKSCGKLW+LDRILIKLQRTGH
Sbjct: 1271 YQAKVYRTLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGH 1330
Query: 1345 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404
RVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIR
Sbjct: 1331 RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIR 1390
Query: 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1464
AAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+KISS QKE
Sbjct: 1391 AAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVNKISSCQKE 1450
Query: 1465 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR 1524
DELRSGGTVDLEDDL GKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR
Sbjct: 1451 DELRSGGTVDLEDDLVGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR 1510
Query: 1525 MTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVP 1584
MTLETLLHDEERYQET+HDVPSLQEVNRMIARSEDEVELFDQMDEEF WIEEMTRYDQVP
Sbjct: 1511 MTLETLLHDEERYQETLHDVPSLQEVNRMIARSEDEVELFDQMDEEFDWIEEMTRYDQVP 1570
Query: 1585 KWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDD 1643
KWLRASTKEV+ATIA LSKKPSK ILF +G+ SGE+ETERKRG PKGKK PNYKE+D+
Sbjct: 1571 KWLRASTKEVDATIAVLSKKPSKAILFADGMGMASGEMETERKRGRPKGKKSPNYKEIDE 1630
Query: 1644 EIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDY 1703
E G+YSEASSDERNGY EEEGEI EFEDDE S AVGAP NKDQSE+DGP C+GGY+Y
Sbjct: 1631 ETGDYSEASSDERNGYSAHEEEGEIREFEDDESSDAVGAPPVNKDQSEDDGPACDGGYEY 1690
Query: 1704 LRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDE 1763
+ E+TRN+H ++EAGSSGSSS+S+R+T+++SPVSPQKFGSLSALEARPGSLSK++PDE
Sbjct: 1691 HQAVESTRNDHALDEAGSSGSSSDSQRMTRMISPVSPQKFGSLSALEARPGSLSKKLPDE 1750
Query: 1764 LEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERS 1823
LEEGEIAVSGDSHMDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPR TVE+PEE+S
Sbjct: 1751 LEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRLRPRLTVEKPEEKS 1810
Query: 1824 CTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 1883
D + RGDS LLPFQ+DNKY AQL++DTEMKA E + +HDQS+ SS+SRRNLPSR+
Sbjct: 1811 SND--VQRGDSFLLPFQVDNKYQAQLKSDTEMKALVEPSGFKHDQSD-SSRSRRNLPSRR 1867
Query: 1884 IANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCK 1943
IA K RAS K+ RLN EDAA+H +ESWDGK+ + SG+S KMSDVIQRRCK
Sbjct: 1868 IAKTSKLRASPKSSRLNLQSAPAEDAAEHSRESWDGKVPSTSGASTL-GKMSDVIQRRCK 1926
Query: 1944 NVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVM 2003
NVISK QRRI+KEG QIVPLL DLWKRIE GY+SGAG N+LDLRKI+QRVDRLEY+GVM
Sbjct: 1927 NVISKFQRRIDKEGQQIVPLLADLWKRIENPGYISGAGTNLLDLRKIEQRVDRLEYSGVM 1986
Query: 2004 ELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPL 2063
ELV DVQFMLKGAMQFYGFSHEVR+EARKVHDLFFD+LKIAFPDTDFREAR SF+GP
Sbjct: 1987 ELVFDVQFMLKGAMQFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFREARDTFSFSGPS 2046
Query: 2064 STSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESR 2123
STS+S PSP+Q +G KRHK IN++EP S KP QRGS+P +D+R RV +PQKE+R
Sbjct: 2047 STSISAPSPKQAALGLIKRHKSINDVEPDNSTTHKPMQRGSIPTGDDTR-RVHVPQKETR 2105
Query: 2124 LGSGSGSSREQSQPDDSP-HPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKS 2181
LGSGSGSSREQ DDSP HPGELVICKKKRKDR+KSVV+ R+ SGPVSPPS+GRNI S
Sbjct: 2106 LGSGSGSSREQYPQDDSPLHPGELVICKKKRKDRDKSVVRSRTGSSGPVSPPSMGRNITS 2165
Query: 2182 PGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 2239
P L +PKD R QQ THQ GW NQP QP NGG+G+VGWANPVKRLRTDAGKRRPS L
Sbjct: 2166 PILSSIPKDARPNQQNTHQQGWVNQP-QPTNGGAGSVGWANPVKRLRTDAGKRRPSHL 2222
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789690|emb|CAN74059.1| hypothetical protein VITISV_024679 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3314 bits (8593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1754/2277 (77%), Positives = 1926/2277 (84%), Gaps = 77/2277 (3%)
Query: 1 MQSGGGPSRNRAAS------TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQ 54
MQSGGGP RN A ++S+ASPSSSSSAVSTPHLGFDS+QQQQQ QQQQ RQ Q
Sbjct: 1 MQSGGGPGRNPAVGPPGRATSTSSASPSSSSSAVSTPHLGFDSIQQQQQQQQQQSRQSLQ 60
Query: 55 QQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHA---ISQ 111
QQ+LRKP+GNEA+LAY G L G+MGGGNFAS GSMQ PQQ RKF D AQQH I +
Sbjct: 61 QQLLRKPEGNEALLAYPGGGLQGVMGGGNFASSSGSMQLPQQPRKFIDLAQQHGASHIRE 120
Query: 112 ESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
++QN+SQGVE +LNPVHQAY+QYA QA QKSA +Q QQQAK+GM+GP S KDQD RM
Sbjct: 121 DNQNKSQGVEQPVLNPVHQAYLQYAFQAAHQKSALGMQPQQQAKMGMVGPPSWKDQDARM 180
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GNLKMQ+LIS+Q+ANQAQASSSK +E + RGEKQMEQ Q +SDQ+ E KPP+ T G
Sbjct: 181 GNLKMQDLISIQAANQAQASSSKKPAEHYARGEKQMEQVQAPISDQRSESKPPTMPTAVG 240
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQL 287
Q M N+ RPMQ+ Q+QQSIQN A NQLA+AAQLQA WALERNIDLS PANA+L+AQL
Sbjct: 241 QLMPGNVTRPMQSVQNQQSIQNMANNQLAVAAQLQAMQAWALERNIDLSLPANANLMAQL 300
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
IP+MQ+R+V K NESNMGA SPV KQQVTSP +A ENSPH NSSSDVSGQSGSAK
Sbjct: 301 IPLMQTRMVTQPKPNESNMGAQPSPVQGPKQQVTSPPVASENSPHGNSSSDVSGQSGSAK 360
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR TV PSP GS +AA+VNN NNI +QQFSV GR++QVP RQ V IGNG+ P+HPPQ S
Sbjct: 361 ARQTVPPSPFGSNPNAAIVNNTNNIPVQQFSVQGRESQVPPRQSVVIGNGMSPMHPPQPS 420
Query: 408 LNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
+NM+ GVD PL KN+ SG E+ QMQYLRQLNRSSPQSA+P +DG N++ SQGG Q
Sbjct: 421 VNMSQGVDHPLHAKNTLSGQESLQMQYLRQLNRSSPQSAVPPNDGGLGNHYQSQGGPLPQ 480
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
+PQQR GFTK QLHVLKAQILAFRRLKKGEGTLPQELLR+I PP LE Q QQ FLP+
Sbjct: 481 VPQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIAPPPLESQ---LQQAFLPS 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ-GM 585
NQD+ +GK ED R LESN KD+QAV S+N + KEEA+AGDDKA S V G
Sbjct: 538 TAINQDKSAGKNVEDHGRQLESNEKDSQAVPSTNGHNFSKEEAFAGDDKATPSTVHMPGA 597
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V KEP PV+ GKEE Q SVKSDQE E G+ +T +SDF DRGK+VAPQV D
Sbjct: 598 PTVMKEPIPVLSAGKEEPQTTAFSVKSDQEXERGIQKTPIRSDFAPDRGKAVAPQVGVSD 657
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
++QVKKP Q ++ Q KD G+ RKYHGPLFDFPFFTRKHDS GS MVN+++NLTLAYDV
Sbjct: 658 SLQVKKPVQTSSTPQQKDAGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNSNLTLAYDV 717
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEG+EVL KKR+ENLKKISG+LAVNLERKRIRPDLVLRLQIE++KLRLLDLQ+RL
Sbjct: 718 KDLLFEEGMEVLNKKRTENLKKISGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARL 777
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDEVDQQQQEIMAMPDR YRKFVRLCERQR+ELMRQVQ SQKAMREKQLKSI QWRKKLL
Sbjct: 778 RDEVDQQQQEIMAMPDRPYRKFVRLCERQRMELMRQVQVSQKAMREKQLKSIFQWRKKLL 837
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 838 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 897
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQ---GLS 942
SIPGDAAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAAAAAR Q GLS
Sbjct: 898 SIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARAQACFGLS 957
Query: 943 EEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLR 1002
EEEVR+AA CAGEEVMIRNRF+EMNAP++ SSVNKYY+LAHAVNERVMRQPSMLRAGTLR
Sbjct: 958 EEEVRTAATCAGEEVMIRNRFIEMNAPKESSSVNKYYTLAHAVNERVMRQPSMLRAGTLR 1017
Query: 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062
DYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL
Sbjct: 1018 DYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1077
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDW 1122
VNWK +V A+KFNVLVTTYEFIMYDRSKLSKVDW
Sbjct: 1078 VNWK---------------------------EVCAMKFNVLVTTYEFIMYDRSKLSKVDW 1110
Query: 1123 KYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR 1182
KYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR
Sbjct: 1111 KYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR 1170
Query: 1183 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 1242
KAFHDWFS+PFQKEGPTHNA+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK
Sbjct: 1171 KAFHDWFSKPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 1230
Query: 1243 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302
VSIVLRC+MSAIQ AIYDWIK+TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK
Sbjct: 1231 VSIVLRCKMSAIQGAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1290
Query: 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1362
CNHPLLNYPYF+D SKDFLV+SCGK+WILDRILIKLQRTGHRVLLFSTMTKLLDILEEY
Sbjct: 1291 ACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1350
Query: 1363 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 1422
LQWR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIRAAGRGLNLQSADTV+IYD
Sbjct: 1351 LQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYD 1410
Query: 1423 PDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 1482
PDPNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKISSHQKEDE RSGGTVD EDDLAGK
Sbjct: 1411 PDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGGTVDSEDDLAGK 1470
Query: 1483 DRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 1542
DRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVH
Sbjct: 1471 DRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVH 1530
Query: 1543 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLS 1602
DVPSLQEVNRMIARSEDEVELFDQMDEE WIE+MTRYDQVPKWLRAST++VN +ANLS
Sbjct: 1531 DVPSLQEVNRMIARSEDEVELFDQMDEELNWIEDMTRYDQVPKWLRASTRDVNIAVANLS 1590
Query: 1603 KKPSKNILFGSNIGVDSGEI------ETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDE 1655
KKPSKN F +NIG++S E +TERKRG PKGK P Y+E+DDE GE+SEASSDE
Sbjct: 1591 KKPSKNTFFAANIGLESSEKGSDLSPKTERKRGRPKGK--PVYRELDDENGEFSEASSDE 1648
Query: 1656 RNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHV 1715
RNGY EEEGEIGEFED+E+SGAVGA SNKDQSEEDG +C+GGY+YLR E+TRN H+
Sbjct: 1649 RNGYSAHEEEGEIGEFEDEEFSGAVGAQPSNKDQSEEDGRICDGGYEYLRALESTRNKHI 1708
Query: 1716 VEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGD 1774
++EAGSSGSSS+SRRLTQ+VSP +S +KFGSLSAL+ARP SLSKR+PDELEEGEIAVSGD
Sbjct: 1709 LDEAGSSGSSSDSRRLTQMVSPSISSRKFGSLSALDARPSSLSKRLPDELEEGEIAVSGD 1768
Query: 1775 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGD 1833
SHMDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPRHTVERPEE+S + + L RGD
Sbjct: 1769 SHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRIRPRHTVERPEEKSSNEKSSLQRGD 1828
Query: 1834 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 1893
SS LP Q+D+KY AQLR+D E K GESN+ +HDQS+ S KSRRNLPSRKI N K AS
Sbjct: 1829 SSQLPMQVDHKYEAQLRSDPEAKLFGESNAFKHDQSDSSLKSRRNLPSRKIGNTSKLHAS 1888
Query: 1894 LKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1953
K+G+LNCM ED A+H +E WDGK+ N G +M +++QR+CKNVISKLQRRI
Sbjct: 1889 PKSGKLNCMSARAEDVAEHSREGWDGKVMNTGG-----PRMPEIMQRKCKNVISKLQRRI 1943
Query: 1954 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013
+KEGHQIVPLLTD WKR+E SGY+SG GNNILDLRKIDQR+DRLEY GVMELV DVQ ML
Sbjct: 1944 DKEGHQIVPLLTDWWKRVEXSGYISGPGNNILDLRKIDQRIDRLEYIGVMELVFDVQQML 2003
Query: 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPR 2073
K +MQ+YG SHEVR EARKVH+LFF++LKIAFPDTDFREAR+A+SF+GP+ST S PSPR
Sbjct: 2004 KNSMQYYGLSHEVRVEARKVHELFFNILKIAFPDTDFREARNAISFSGPVSTPASAPSPR 2063
Query: 2074 QTTVGQSKRHKIINEMEPGPSPPQKPPQRG-------SVPVSEDSRIRVQIPQKESRLGS 2126
Q VGQ KRHK INE+EP PSPP K RG + SED+R + I QKESRLGS
Sbjct: 2064 QAAVGQGKRHKPINEVEPDPSPPPKQLLRGAAAAAAAAAAASEDTRAKSHISQKESRLGS 2123
Query: 2127 GSGSSREQSQPDDSPHPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKSPGLG 2185
S S + P + HPG+LVI KKKRKDREKS KPRS SGPVSPPS+GR+I+SPG G
Sbjct: 2124 -SSSRDQDDSPLLT-HPGDLVISKKKRKDREKSAAKPRSGSSGPVSPPSMGRSIRSPGPG 2181
Query: 2186 LVPKDMRHTQQTTHQHGWANQPAQPAN---GGSGAVGWANPVKRLRTDAGKRRPSQL 2239
+ KD R TQQ THQ WA+QPAQ AN GG G VGWANPVKR+RTDAGKRRPS L
Sbjct: 2182 SMQKDGRSTQQATHQQAWASQPAQQANGGSGGGGTVGWANPVKRMRTDAGKRRPSHL 2238
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560792|ref|XP_003548671.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3180 bits (8244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1624/2223 (73%), Positives = 1859/2223 (83%), Gaps = 49/2223 (2%)
Query: 33 LGFDSLQQQQQHQQQQQ---RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPG 89
LG DS+QQQQQ QQQQQ RQ FQQQ+LRKP+GNEA LAYQ G + G+ G NF+SP
Sbjct: 38 LGLDSMQQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAG-IQGVFGSNNFSSP-S 95
Query: 90 SMQPPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQ 148
+MQ PQQ RK +Q+ Q R QGVE Q+LNPVHQAY+QYAL A QQ+ +Q
Sbjct: 96 AMQLPQQPRKL-----HLGSNQDIQLRGQGVEQQMLNPVHQAYLQYALHAAQQRPTLGIQ 150
Query: 149 SQQQAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQ 208
SQQQ K+GML AS +DQ+MRMGNLKMQ+++SMQ+ANQ Q SSS+NSSE+ RG+KQM+Q
Sbjct: 151 SQQQTKMGMLSSASLQDQEMRMGNLKMQDIMSMQAANQGQGSSSRNSSERGARGDKQMDQ 210
Query: 209 PQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA-- 266
QQ DQK E KP +Q G + N+IRPMQ + QQ IQN Q+A++AQLQA
Sbjct: 211 GQQMTPDQKSEGKPSTQGPTIGHLIPGNMIRPMQGPETQQGIQNVVNTQIAVSAQLQAMQ 270
Query: 267 -WALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTI 325
WA ERNIDLS PANA L+AQLIP+MQSR+V+ K NESN+GA SSPVPVSKQQVTSP +
Sbjct: 271 AWARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESNIGAQSSPVPVSKQQVTSPAV 330
Query: 326 AGENSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQ 385
A E+S HANSSSD+SGQSGS+KAR T S LGS T+A + N ++++ QQF+VHGR++Q
Sbjct: 331 ASESSAHANSSSDMSGQSGSSKARQTAPSSHLGSITNAGIAGNSSDMATQQFNVHGRESQ 390
Query: 386 VPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQS 444
P RQPV +GNG+P +H Q+S N G D PL K +SSGPE QMQY RQLN+S+PQ+
Sbjct: 391 APPRQPVVVGNGMPSMHSQQSSANTNLGADHPLNAKTSSSGPEPPQMQYTRQLNQSAPQA 450
Query: 445 AIPSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELL 504
P+++G N SQG A QMPQQR FTK QLHVLKAQILAFRRLKKGEGTLPQELL
Sbjct: 451 GGPTNEGGLGNPAKSQGRPA-QMPQQRTNFTKQQLHVLKAQILAFRRLKKGEGTLPQELL 509
Query: 505 RAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSL 564
RAIVPP LE+Q AQQ A NQD+ +G IA +Q+ +ES+ K+ Q++ S N QS
Sbjct: 510 RAIVPPPLEMQ---AQQPNHSARGQNQDKPAGNIAAEQISPIESSAKEPQSIPSINGQSS 566
Query: 565 PKEEAYAGDDKAAVSPVGQGMSA--VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLR 622
K E++A D+K+ V PV A V+KE AP + GK++Q++ SVKS+Q+ EC +
Sbjct: 567 LKHESFARDEKSIVPPVHVQAVAPPVSKESAPTLSAGKKDQKSIGCSVKSNQDGEC-VNN 625
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTR 682
T +++ DRGK++APQ D +Q+KKP+Q +T QPKDVG RKYHGPLFDFPFFTR
Sbjct: 626 TTVRNELALDRGKAIAPQAPVSDTMQIKKPSQTSTGPQPKDVGPTRKYHGPLFDFPFFTR 685
Query: 683 KHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIR 742
KHDS GS+ M+N++NNL+LAYDVKDLL EEG+EVL KKR+ENLKKI G+LAVNLERKRIR
Sbjct: 686 KHDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIR 745
Query: 743 PDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQV 802
PDLVLRLQIE+KKLRL+DLQ+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQV
Sbjct: 746 PDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQV 805
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRN 862
Q SQ+A+REKQLKSI QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSKRKDDDRN
Sbjct: 806 QASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRN 865
Query: 863 KRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQ 922
KR+EALKNNDV+RYREMLLEQQTSIPGDAAERYAVLS+FLTQTEEYL+KLGSKITAAKNQ
Sbjct: 866 KRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQ 925
Query: 923 QEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA 982
QEVEEAA AAAAAARLQGLSEEEVR+AAACAGEEVMIRNRFLEMNAPRD SSVNKYY+LA
Sbjct: 926 QEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLA 985
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
HAVNE V+RQPSMLRAGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY
Sbjct: 986 HAVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1045
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFN 1101
LMEFKGNYGPHLIIVPNAVLVNWKSE + WLPSVSCI+YVG+KD RS+LFSQ V A+KFN
Sbjct: 1046 LMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFN 1105
Query: 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161
VLVTTYEFIMYDRSKLSK+DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQ
Sbjct: 1106 VLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQ 1165
Query: 1162 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221
NDLKELWSLLNLLLPEVFDN+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQ
Sbjct: 1166 NDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQ 1225
Query: 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1281
ILEPFMLRRRVEDVEGSLPPKVSIVL+C+MSA+QSAIYDW+K+TGTLR+DPEDEK ++ +
Sbjct: 1226 ILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKHKLHR 1285
Query: 1282 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1341
NP YQ K YKTLNNRCMELRKTCNHPLLNYP+FSDLSK+F+V+SCGKLWILDRILIKLQR
Sbjct: 1286 NPAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVRSCGKLWILDRILIKLQR 1345
Query: 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1401
TGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS DSDCFIFLL
Sbjct: 1346 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLL 1405
Query: 1402 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1461
SIRAAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI+SH
Sbjct: 1406 SIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIASH 1465
Query: 1462 QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1521
QKEDELRSGGTVD+ED+LAGKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHE
Sbjct: 1466 QKEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1525
Query: 1522 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYD 1581
ERR+TLETLLHDEERYQETVHDVPSLQEVNRMIARS++E+ELFDQMD+E WIEEMTRYD
Sbjct: 1526 ERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYD 1585
Query: 1582 QVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKE 1640
VPKWLRA+T+EVNA I LSK+ SKN L G +IG++S E +ERKRG PKGKK+PNYKE
Sbjct: 1586 HVPKWLRANTREVNAAIGALSKRSSKNTLLGGSIGIESSEFGSERKRGRPKGKKHPNYKE 1645
Query: 1641 VDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGG 1700
+DDEI EYSE SSDERN Y EEGE+GEF+DD YS A G +KDQ EDG +C+ G
Sbjct: 1646 LDDEILEYSEVSSDERNEYA--HEEGEMGEFDDDGYSMADGVQTIDKDQL-EDGLLCDAG 1702
Query: 1701 YDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKR 1759
Y++ + E+ RNN +VEEAG+SGSSS+S+R+ QIVSP VS QKFGSLSAL+ARP S+SKR
Sbjct: 1703 YEFPQSLESARNNQMVEEAGTSGSSSDSQRVRQIVSPSVSSQKFGSLSALDARPSSISKR 1762
Query: 1760 MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVER 1818
M DELEEGEIAVSGDSHMDHQQSGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH ER
Sbjct: 1763 MTDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATER 1822
Query: 1819 PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1878
PEE+S ++ H L Q D+KY AQLRTD E K G+SN+ RH+Q+ P+ K++R
Sbjct: 1823 PEEKSGSEMASH------LAVQADHKYQAQLRTDPESKLFGDSNASRHEQNTPALKNKRT 1876
Query: 1879 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1938
LPSR++AN K S K+ RLNCM ++DA DH +ESW+GK N+SGSS KM+++I
Sbjct: 1877 LPSRRVANTSKLHGSPKSSRLNCMSVPSQDAGDHSRESWEGKPINSSGSSAHGTKMTEII 1936
Query: 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLE 1998
QRRCKNVISKLQRRI+KEGH+IVPLL DLWKRIE SG+GN++LDLRKIDQR+D+ E
Sbjct: 1937 QRRCKNVISKLQRRIDKEGHEIVPLLMDLWKRIEN----SGSGNSLLDLRKIDQRIDKFE 1992
Query: 1999 YNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALS 2058
YNG ELV DVQFMLK AM FYGFSHEVR+EARKVHDLFF++LKIAFPDTDFR+ARSALS
Sbjct: 1993 YNGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFEILKIAFPDTDFRDARSALS 2052
Query: 2059 FTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIP 2118
F+ + T SPRQ V QSKRH++INEME P Q+ QRGS E++RI+V +P
Sbjct: 2053 FSSQAAAGTVT-SPRQAAVSQSKRHRLINEMETESYPSQRSLQRGSASSGENNRIKVHLP 2111
Query: 2119 QKESRLGSGSGSSREQSQPDDS---PHPGELVICKKKRKDREKSVVKPRSVSGPVSPPSL 2175
Q+ESR GSG GSS + Q +DS HPGELV+CKK+R DREKS VKP+ +GPVSP S+
Sbjct: 2112 QRESRTGSGGGSSTREQQQEDSSLLAHPGELVVCKKRRNDREKSAVKPK--TGPVSPSSM 2169
Query: 2176 GRNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRR 2235
++PG VPK+ R TQQ +H GWA QP+Q NG G+VGWANPVKRLRTD+GKRR
Sbjct: 2170 ----RTPGPSSVPKEARLTQQGSHAQGWAGQPSQQPNGSGGSVGWANPVKRLRTDSGKRR 2225
Query: 2236 PSQ 2238
PS
Sbjct: 2226 PSH 2228
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432144|ref|XP_004133860.1| PREDICTED: ATP-dependent helicase BRM-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3155 bits (8179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1662/2271 (73%), Positives = 1868/2271 (82%), Gaps = 56/2271 (2%)
Query: 1 MQSGGG-PSRN-------RAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQP 52
MQSGGG P RN A++TS+AASPSSSSSAVSTPHLGFDS+QQQQQ Q RQ
Sbjct: 1 MQSGGGGPLRNPGFPAGRAASTTSAAASPSSSSSAVSTPHLGFDSMQQQQQ--QLASRQS 58
Query: 53 FQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQH-AISQ 111
Q Q+LRK DGNEA+L+YQ G L G++ G NF PGS PQQ+RKF D AQQH SQ
Sbjct: 59 LQHQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQARKFIDLAQQHHGTSQ 118
Query: 112 ESQNRSQGVEHQLLN-PVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
E QNRSQG+E Q LN P+HQAY+QYAL AQQKSA +QSQ QAK+G++ P S KDQ+MRM
Sbjct: 119 EGQNRSQGLEQQALNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMGIMSPQSIKDQEMRM 178
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GN K+QELI Q +NQA S SK SS+ F RGEKQMEQ SDQ+ + K SQ G
Sbjct: 179 GNQKIQELIPTQVSNQASTSLSKKSSDHFVRGEKQMEQGPPSTSDQRVDSKSSSQLPSMG 238
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAA--QLQAWALERNIDLSQPANASLIAQLI 288
+ N+ RPMQA Q Q I N A NQL MA +QAWALERNIDLS P+N ++++QL
Sbjct: 239 NMVPVNMTRPMQAPQGQPGILNMANNQLGMAQLQAVQAWALERNIDLSLPSNVNIVSQLF 298
Query: 289 PIMQSRIVANH-KANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
P++Q R++ H K NE+NMG SSP V KQQ+ S E S HANS SDVSGQS S K
Sbjct: 299 PMLQPRMLVPHQKPNENNMGQQSSPASVPKQQINSLFAGKEASAHANSLSDVSGQSSSTK 358
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR S +P G +A+VVNN ++ S+QQFSV G +NQ+ SR PV+ GN +PP+H ++S
Sbjct: 359 ARQIASTNPFGQNMNASVVNNTSHASMQQFSVPGMENQLSSRLPVS-GNTIPPVHSSESS 417
Query: 408 LNMTPGVDQPLPVKNSSG-PENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
N+ +++ L K S G PEN Q QY+RQ+NRSSPQ+A+P+SDG S+N+ QGG + Q
Sbjct: 418 GNVNQNIERSLQGKTSLGTPENVQTQYVRQVNRSSPQTALPTSDGGSSNSTLPQGGHSNQ 477
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
QQR GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI PP L++QQQ QFLP
Sbjct: 478 TAQQRFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDVQQQ----QFLPP 533
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGM 585
+QD+ SGK ED ++E+ KD+ +++SSN P+EE GD+K+ S Q M
Sbjct: 534 GSTSQDKSSGKTVED-TGNVEATEKDSLSLASSNGHRFPREEVSTGDEKSKTSTSDVQPM 592
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
KE PV GKEEQQ VS VKSDQE + G + ++DFP +RGK++A Q + D
Sbjct: 593 PPAMKETVPVASSGKEEQQTTVS-VKSDQETDRGCQKPPGKTDFPVERGKAIANQAAVPD 651
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
QVKKPA +T Q KDVGAARKYHGPLFDFP+FTRKHDS GS VN++NNLTLAYDV
Sbjct: 652 VTQVKKPAPPSTP-QSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNNLTLAYDV 710
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEGLEV+ KKR+ENLKKI G+LAVNLERKRIRPDLV+RLQIE+KKLRLLDLQ+RL
Sbjct: 711 KDLLFEEGLEVINKKRTENLKKIGGLLAVNLERKRIRPDLVVRLQIEEKKLRLLDLQARL 770
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQKAMREKQLKS+ QWRKKLL
Sbjct: 771 RDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVFQWRKKLL 830
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 831 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 890
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
S+PGDAAERY+VLSSFLTQTEEYL+KLGSKITAAK+QQEV EAAN AAAAARLQGLSEEE
Sbjct: 891 SMPGDAAERYSVLSSFLTQTEEYLHKLGSKITAAKSQQEVAEAANIAAAAARLQGLSEEE 950
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AAACAGEEVMIRNRF+EMNAP+D S VNKYY+LAHAVNER++RQPSMLRAGTLRDYQ
Sbjct: 951 VRAAAACAGEEVMIRNRFMEMNAPKDSSYVNKYYNLAHAVNERIVRQPSMLRAGTLRDYQ 1010
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1011 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1070
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1124
KSELH WLPSVSCIYYVG KD+RS+LFSQ V ALKFNVLVTTYEFIMYDRSKLSK+DWKY
Sbjct: 1071 KSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKY 1130
Query: 1125 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1184
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1131 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1190
Query: 1185 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1244
FHDWFS+PFQKEGPT NA+DDWLETEKK+IIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1191 FHDWFSKPFQKEGPTPNAEDDWLETEKKIIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1250
Query: 1245 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304
IVLRCRMSA QSA+YDWIKATGTLRVDPEDEK RVQKNP YQ KVYKTLNNRCMELRKTC
Sbjct: 1251 IVLRCRMSAFQSAVYDWIKATGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRCMELRKTC 1310
Query: 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1364
NHPLLNYPY+ D SKDFLV+SCGKLWILDRILIKLQ+TGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1311 NHPLLNYPYYGDFSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLDILEEYLQ 1370
Query: 1365 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1424
WR+L+YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD
Sbjct: 1371 WRRLIYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1430
Query: 1425 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1484
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDK SS+QKEDELRSGG+ DLEDD AGKDR
Sbjct: 1431 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKFSSNQKEDELRSGGSGDLEDDFAGKDR 1490
Query: 1485 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1544
Y+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1491 YMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1550
Query: 1545 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1604
PSLQEVNRMIARSEDEVELFDQMDEEF W EEMTRYDQ+PKWLRAST+EVN IANLSKK
Sbjct: 1551 PSLQEVNRMIARSEDEVELFDQMDEEFDWTEEMTRYDQIPKWLRASTREVNNAIANLSKK 1610
Query: 1605 PSKNILFGSNIGVDSGE------IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1657
PSKNILFG+ G++S E + TERKRG PKGKK PNYKE+DD+ GE+SEASSDERN
Sbjct: 1611 PSKNILFGAGYGLESSELGSDSSLRTERKRGRPKGKKIPNYKEMDDDNGEFSEASSDERN 1670
Query: 1658 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1717
GY VQEEEGEI EFEDDEYS + A NKDQ EDGP C+ YDY P + RNNH++E
Sbjct: 1671 GYSVQEEEGEIAEFEDDEYSRGIEATQLNKDQM-EDGPDCDARYDY--PRDGARNNHLLE 1727
Query: 1718 EAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1777
EAGSSGSSS+SRRLTQ+VSPVS QKFG LSAL+ARP SLSKR+PDELEEGEIA+SGDSHM
Sbjct: 1728 EAGSSGSSSSSRRLTQMVSPVSSQKFGFLSALDARPSSLSKRLPDELEEGEIAISGDSHM 1787
Query: 1778 DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT-PLHRGDSSL 1836
++QQS SW HDR++GE+EQVLQPKIKRKRS+R+RPR ER EE+ +T L GDSS
Sbjct: 1788 ENQQSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYNETQSLQYGDSSS 1847
Query: 1837 -LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1895
PF D+K+ ++ + D E K +G+SNSL+H+Q+E SSK+RRNL +R++A + K +S K
Sbjct: 1848 PSPFLADHKF-SKFKNDPEAKPYGDSNSLKHEQNESSSKNRRNLSARRVAPSSKLHSSPK 1906
Query: 1896 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1955
+ RLN + +DA +H +E+WDGK +N G+S F +KM D+IQRRCKNVISKLQ R +K
Sbjct: 1907 SSRLNSVTRSADDAVEHSRENWDGKQSNTGGNSGFGSKMPDIIQRRCKNVISKLQSRTDK 1966
Query: 1956 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015
EGHQIVPLLTDLWKR+ S SG NNILDLRKIDQR+DRLEYNGVMELV DVQFMLKG
Sbjct: 1967 EGHQIVPLLTDLWKRMGNSSLPSGVSNNILDLRKIDQRIDRLEYNGVMELVFDVQFMLKG 2026
Query: 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQT 2075
AMQFYGFSHEVR EA+KVHDLFFD+LKIAFPDTDFREAR+ALSF P S++ +T R+
Sbjct: 2027 AMQFYGFSHEVRFEAKKVHDLFFDILKIAFPDTDFREARNALSFQSPGSSAAAT--MRER 2084
Query: 2076 TVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQ-IPQKESRLGSGSGSSREQ 2134
GQ KR K++++M+ PP K RG V E R I QKE+R GSGSG S++Q
Sbjct: 2085 PAGQIKRQKMVHDMDTDSGPPHKSLHRGPVSGEETRATRGHLIAQKETRFGSGSG-SKDQ 2143
Query: 2135 SQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLG-RNIKSPGLGLVPK 2189
Q ++ P HPGELVICKKKRKDREKS+VKPR+ S GPVSPP G R I+SPGL VPK
Sbjct: 2144 YQIEEPPLLTHPGELVICKKKRKDREKSIVKPRTGSGGPVSPPPSGARGIRSPGLSSVPK 2203
Query: 2190 DMRHTQQTTHQHGWANQPAQPANG-GSGAVGWANPVKRLRTDAGKRRPSQL 2239
D + +Q GW NQP Q ANG G G V WANPVKRLRTDAGKRRPS +
Sbjct: 2204 DSKQSQ------GWPNQP-QSANGSGGGPVSWANPVKRLRTDAGKRRPSHI 2247
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520394|ref|XP_003528847.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3147 bits (8159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1619/2222 (72%), Positives = 1847/2222 (83%), Gaps = 50/2222 (2%)
Query: 33 LGFDSLQQQQQHQQQQ--QRQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGS 90
LG DS+QQQQQ QQQQ RQ FQQQ+LRKP+GNEA LAYQ G + G+ G NF+SP +
Sbjct: 38 LGLDSMQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAG-IQGVFGNNNFSSP-SA 95
Query: 91 MQPPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQ 150
MQ PQQ RK +Q++ R QG+E Q LNPVHQAY+QYAL AQQ+ +QSQ
Sbjct: 96 MQLPQQPRKL-----HLGSNQDTHQRGQGIEQQTLNPVHQAYLQYALHAQQRPTLGIQSQ 150
Query: 151 QQAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQ 210
Q K GML AS KDQ+MRMG+LKMQ+++SMQ+ANQ Q SSS+NSSE+ RG+KQMEQ Q
Sbjct: 151 QHTKTGMLSSASLKDQEMRMGHLKMQDIMSMQAANQGQGSSSRNSSERVARGDKQMEQGQ 210
Query: 211 QQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---W 267
Q DQK E KP +Q G ++ N+IRPMQA + QQ IQN Q+A +AQLQA W
Sbjct: 211 QIAPDQKSEGKPLTQGPTIGHLISGNMIRPMQAPETQQGIQNVVNTQIAASAQLQAMQAW 270
Query: 268 ALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAG 327
A ERNIDLS PANA L+AQLIP+MQSR+V+ K NES++GA SSPVPVSKQQVTSP +A
Sbjct: 271 ARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESSIGAQSSPVPVSKQQVTSPAVAS 330
Query: 328 ENSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVP 387
E+S HANSSSD+SGQSGS+KAR T PS LGS T+A + N + ++ QQF+V GR++Q P
Sbjct: 331 ESSAHANSSSDMSGQSGSSKARQTAPPSHLGSITNAGIAGNSSEMATQQFNVRGRESQAP 390
Query: 388 SRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQSAI 446
RQPV +GNG+P +H Q+S N D PL K +SSGPE QMQY+RQLN+S+PQ+
Sbjct: 391 PRQPVVVGNGMPSMHSQQSSANTNFSADHPLNAKTSSSGPEPPQMQYMRQLNQSAPQAGG 450
Query: 447 PSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRA 506
P+++G S N+ SQG TQMPQ R FTK QLHVLKAQILAFRRLKKGEGTLPQELLRA
Sbjct: 451 PTNEGGSGNHAKSQGP-PTQMPQHRTSFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRA 509
Query: 507 IVPPSLELQ-QQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLP 565
IVPP LE+Q QQP A NQD+ +G I + + +ES+ K+ ++ S N QS
Sbjct: 510 IVPPPLEMQVQQPNH----AAGGQNQDKPAGNIVAELISPIESSAKEPLSIPSINGQSSL 565
Query: 566 KEEAYAGDDKAAVSPVGQGMSA--VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRT 623
K+E++ D+K+ V V A V+KE AP + GKEEQ++ SVKS+Q+ E +
Sbjct: 566 KQESFVRDEKSIVPAVHVQAVAPPVSKESAPTLSAGKEEQKSIGCSVKSNQDGE-RVNNN 624
Query: 624 QQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRK 683
+++ DRGK+VAPQ D +Q+KKPAQ ++ QPKDVG+ RKYHGPLFDFPFFTRK
Sbjct: 625 TVRNELALDRGKAVAPQAHVSDTMQIKKPAQTSSVPQPKDVGSTRKYHGPLFDFPFFTRK 684
Query: 684 HDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRP 743
HDS GS+ M+N++NNL+LAYDVKDLL EEG+EVL KKR+ENLKKI G+LAVNLERKRIRP
Sbjct: 685 HDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRP 744
Query: 744 DLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQ 803
DLVLRL+IE+KKLRL+DLQ+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ
Sbjct: 745 DLVLRLRIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQ 804
Query: 804 TSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
SQ+A+REKQLKSI QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSK KDDDRNK
Sbjct: 805 ASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKHKDDDRNK 864
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQ 923
R+EALKNNDV+RYREMLLEQQTSIPGDAAERYAVLS+FLTQTEEYL+KLGSKIT AKNQQ
Sbjct: 865 RLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITTAKNQQ 924
Query: 924 EVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAH 983
EVEEAA AAAAAARLQGLSEEEVR+AAACAGEEVMIRNRFLEMNAPRD SSVNKYY+LAH
Sbjct: 925 EVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAH 984
Query: 984 AVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043
AVNE V+RQPSMLRAGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL
Sbjct: 985 AVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1044
Query: 1044 MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNV 1102
MEFKGNYGPHLIIVPNAVLVNWKSE + WLPSVSCI+YVG+KD RS+LFSQ V A+KFNV
Sbjct: 1045 MEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNV 1104
Query: 1103 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162
LVTTYEFIMYDRSKLSK+DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQN
Sbjct: 1105 LVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 1164
Query: 1163 DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222
DLKELWSLLNLLLPEVFDN+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQI
Sbjct: 1165 DLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQI 1224
Query: 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN 1282
LEPFMLRRRVEDVEGSLPPKVSIVL+C+MSA+QSAIYDW+K+TGTLR+DPEDEKR++ +N
Sbjct: 1225 LEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHRN 1284
Query: 1283 PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT 1342
P YQ K YKTLNNRCMELRKTCNHPLLNYP+FSDLSK+F+VKSCGKLWILDRILIKLQRT
Sbjct: 1285 PAYQMKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRT 1344
Query: 1343 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402
GHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS DSDCFIFLLS
Sbjct: 1345 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLS 1404
Query: 1403 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1462
IRAAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKI+SHQ
Sbjct: 1405 IRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKIASHQ 1464
Query: 1463 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1522
KEDELRSGGTVD+ED+LAGKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEE
Sbjct: 1465 KEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1524
Query: 1523 RRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQ 1582
RR+TLETLLHDEERYQETVHDVPSLQEVNRMIARS++E+ELFDQMD+E WIEEMTRYD
Sbjct: 1525 RRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYDH 1584
Query: 1583 VPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEV 1641
VPKWLRA+T+EVNA I LSK+PSKN L G +IG++S E +ERKRG PKGKK+PNYKE+
Sbjct: 1585 VPKWLRANTREVNAAIGALSKRPSKNTLLGGSIGMESSEFGSERKRGRPKGKKHPNYKEL 1644
Query: 1642 DDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGY 1701
DDEI EYSE SSDERN Y EGEIGEF+DD YS A GA +KDQ EDG +C+ GY
Sbjct: 1645 DDEILEYSEVSSDERNEYA---HEGEIGEFDDDGYSVADGAQTIDKDQL-EDGLLCDAGY 1700
Query: 1702 DYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRM 1760
++ + E+ RNN +VEEAGSSGSSS+S+R+ QIVSP VS QKFGSLSAL+ARP S+SKRM
Sbjct: 1701 EFPQSLESARNNQMVEEAGSSGSSSDSQRVRQIVSPSVSSQKFGSLSALDARPSSISKRM 1760
Query: 1761 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVERP 1819
DELEEGEIAVSGDSHMDHQ SGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH ERP
Sbjct: 1761 TDELEEGEIAVSGDSHMDHQLSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERP 1820
Query: 1820 EERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNL 1879
EE+S ++ H L Q D+KY AQLRTD E K G+SN+ RH+Q+ PS K++R L
Sbjct: 1821 EEKSGSEMASH------LAVQADHKYQAQLRTDPESKLFGDSNASRHEQNSPSLKNKRTL 1874
Query: 1880 PSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQ 1939
PSR++AN K S K+ RLNCM ++D +H +ESW+GK N+SGSS KM+++IQ
Sbjct: 1875 PSRRVANTSKLHGSPKSSRLNCMSVPSQDGGEHSRESWEGKPINSSGSSAHGTKMTEIIQ 1934
Query: 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEY 1999
RRCKNVISKLQRRI+KEGH+IVPLLTDLWKRIE SG V N++LDLRKIDQR+D+ EY
Sbjct: 1935 RRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGSV----NSLLDLRKIDQRIDKFEY 1990
Query: 2000 NGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSF 2059
NG ELV DVQFMLK AM FYGFSHEVR+EARKVHDLFFD+LKIAFPDTDFR+ARSALSF
Sbjct: 1991 NGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSF 2050
Query: 2060 TGPLSTSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQ 2119
+ + S T SPRQ VGQSKRHK+INEME Q+ QRGS SE++RI+V +PQ
Sbjct: 2051 SSQATASTVT-SPRQVAVGQSKRHKLINEMETESYALQRSLQRGSASSSENNRIKVHLPQ 2109
Query: 2120 KESRLGSGSGSSREQSQPDDS---PHPGELVICKKKRKDREKSVVKPRSVSGPVSPPSLG 2176
+ESR GSG GSS + Q DDS HPGELV+CKK+R DREKSVVKP+ +GP SP S+
Sbjct: 2110 RESRTGSGGGSSTREQQQDDSSLLAHPGELVVCKKRRNDREKSVVKPK--TGPASPSSM- 2166
Query: 2177 RNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRP 2236
++PG V KD R +QQ +H GWA QP+Q NG G V WANPVKRLRTD+GKRRP
Sbjct: 2167 ---RTPGPSSVTKDARLSQQGSHAQGWAGQPSQQPNGSGGPVAWANPVKRLRTDSGKRRP 2223
Query: 2237 SQ 2238
S
Sbjct: 2224 SH 2225
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480215|ref|XP_004155832.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase BRM-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3128 bits (8109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1658/2271 (73%), Positives = 1862/2271 (81%), Gaps = 52/2271 (2%)
Query: 1 MQSGGG-PSRN-------RAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQP 52
MQSGGG P RN A++TS+AASPSSSSSAVSTPHLGFDS+QQQQQ Q RQ
Sbjct: 1 MQSGGGGPLRNPGFPAGRAASTTSAAASPSSSSSAVSTPHLGFDSMQQQQQ--QLASRQS 58
Query: 53 FQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQH-AISQ 111
Q Q+LRK DGNEA+L+YQ G L G++ G NF PGS PQQ+RKF D AQQH SQ
Sbjct: 59 LQHQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQARKFIDLAQQHHGTSQ 118
Query: 112 ESQNRSQGVEHQLLN-PVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
E QNRSQG+E Q LN P+HQAY+QYAL AQQKSA +QSQ QAK+G++ P S KDQ+MRM
Sbjct: 119 EGQNRSQGLEQQALNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMGIMSPQSIKDQEMRM 178
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GN K+QELI Q +NQA S SK SS+ F RGEKQMEQ SDQ+ + K SQ G
Sbjct: 179 GNQKIQELIPTQVSNQASTSLSKKSSDHFVRGEKQMEQGPPSTSDQRVDSKSSSQLPSMG 238
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAA--QLQAWALERNIDLSQPANASLIAQLI 288
+ N+ RPMQA Q Q I N A NQL MA +QAWALERNIDLS P+N ++++QL
Sbjct: 239 NMVPVNMTRPMQAPQGQPGILNMANNQLGMAQLQAVQAWALERNIDLSLPSNVNIVSQLF 298
Query: 289 PIMQSRIVANH-KANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
P++Q R++ H K NE+NMG SSP V KQQ+ S E S HANS SDVSGQS S K
Sbjct: 299 PMLQPRMLVPHQKPNENNMGQQSSPASVPKQQINSLFAGKEASAHANSLSDVSGQSSSTK 358
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR S +P G +A+VVNN ++ S+QQFSV G +NQ+ SR PV+ GN +PP+H ++S
Sbjct: 359 ARQIASTNPFGQNMNASVVNNTSHASMQQFSVPGMENQLSSRLPVS-GNTIPPVHSSESS 417
Query: 408 LNMTPGVDQPLPVKNSSG-PENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
N+ +++ L K S G PEN Q QY+RQ+NRSSPQ+A+P+SDG S+N+ QGG + Q
Sbjct: 418 GNVNQNIERSLQGKTSLGTPENVQTQYVRQVNRSSPQTALPTSDGGSSNSTLPQGGHSNQ 477
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
QQR GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI PP L++QQQ QQQFLP
Sbjct: 478 TAQQRFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDVQQQQQQQQFLPP 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGM 585
QD+ SGK ED ++E+ KD+ +++SSN P+EE GD+K+ S Q M
Sbjct: 538 GSTIQDKSSGKTVED-TGNVEATEKDSLSLASSNGHRFPREEVSTGDEKSKTSTSDVQPM 596
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
KE V GKEEQQ VS VKSDQE + G + ++DFP +RGK++A Q + D
Sbjct: 597 PPAMKETVTVASSGKEEQQTTVS-VKSDQETDRGCQKPPGKTDFPVERGKAIANQAAVPD 655
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
QVKKPA +T Q KDVGAARKYHGPLFDFP+FTRKHDS GS VN++NNLTLAYDV
Sbjct: 656 VTQVKKPAPPSTP-QSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNNLTLAYDV 714
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEGLEV+ KKR+ENLKKI G+LAVNLERKRIRPDLV+RLQIE+KKLRLLDLQ+RL
Sbjct: 715 KDLLFEEGLEVINKKRTENLKKIGGLLAVNLERKRIRPDLVVRLQIEEKKLRLLDLQARL 774
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQKAMREKQLKS+ QWRKKLL
Sbjct: 775 RDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVFQWRKKLL 834
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 835 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 894
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
S+PGDAAERY+VLSSFLTQTEEYL+KLGSKITAAK+QQEV EAAN AAAAARLQGLSEEE
Sbjct: 895 SMPGDAAERYSVLSSFLTQTEEYLHKLGSKITAAKSQQEVAEAANIAAAAARLQGLSEEE 954
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AAACAGEEVMIRNRF+EMNAP+D S VNKYY+LAHAVNER++RQPSMLRAGTLRDYQ
Sbjct: 955 VRAAAACAGEEVMIRNRFMEMNAPKDSSYVNKYYNLAHAVNERIVRQPSMLRAGTLRDYQ 1014
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1015 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1074
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1124
KSELH WLPSVSCIYYVG KD+RS+LFSQ V ALKFNVLVTTYEFIMYDRSKLSK+DWKY
Sbjct: 1075 KSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKY 1134
Query: 1125 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1184
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1135 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1194
Query: 1185 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1244
FHDWFS+PFQKEGPT NA+DDWLETEKK IIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1195 FHDWFSKPFQKEGPTPNAEDDWLETEKKXIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1254
Query: 1245 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304
IVLRCRMSA QSA+YDWIKATGTLRVDPEDEK RVQKNP YQ KVYKTLNNRCMELRKTC
Sbjct: 1255 IVLRCRMSAFQSAVYDWIKATGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRCMELRKTC 1314
Query: 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1364
NHPLLNYPY+ D SKDFLV+SCGKLWILDRILIKLQ+TGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1315 NHPLLNYPYYGDFSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLDILEEYLQ 1374
Query: 1365 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1424
WR+L+YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD
Sbjct: 1375 WRRLIYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1434
Query: 1425 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1484
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDK SS+QKEDELRSGG+ DLEDD AGKDR
Sbjct: 1435 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKFSSNQKEDELRSGGSGDLEDDFAGKDR 1494
Query: 1485 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1544
Y+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1495 YMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1554
Query: 1545 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1604
PSLQEVNRMIARSEDEVELFDQMDEEF W EEMTR DQ+PKWLRAST+EVN IANLSKK
Sbjct: 1555 PSLQEVNRMIARSEDEVELFDQMDEEFDWTEEMTRCDQIPKWLRASTREVNNAIANLSKK 1614
Query: 1605 PSKNILFGSNIGVDSGE------IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1657
PSKNILFG+ G++S E + TERKRG PKGKK PNYKE+DD+ GE+SEASSDER
Sbjct: 1615 PSKNILFGAGYGLESSELGSDSSLRTERKRGRPKGKKIPNYKEMDDDNGEFSEASSDERK 1674
Query: 1658 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1717
Y VQEEEGEI EFEDDEYS + A NKDQ EDGP C+ YDY P + RNNH++E
Sbjct: 1675 XYSVQEEEGEIAEFEDDEYSRGIEATQLNKDQM-EDGPDCDARYDY--PRDGARNNHLLE 1731
Query: 1718 EAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1777
EAGSSGSSS+SRRLTQ+VSPVS QKFG LSAL+ARP SLSKR+PDELEEGEIA+SGDSHM
Sbjct: 1732 EAGSSGSSSSSRRLTQMVSPVSSQKFGFLSALDARPSSLSKRLPDELEEGEIAISGDSHM 1791
Query: 1778 DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT-PLHRGDSSL 1836
++QQS SW HDR++GE+EQVLQPKIKRKRS+R+RPR ER EE+ +T L GDSS
Sbjct: 1792 ENQQSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYNETQSLQYGDSSS 1851
Query: 1837 -LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1895
PF D+K+ ++ + D E K +G+SNSL+H+Q+E SSK+RRNL +R++A + K +S K
Sbjct: 1852 PSPFLADHKF-SKFKNDPEAKPYGDSNSLKHEQNESSSKNRRNLSARRVAPSSKLHSSPK 1910
Query: 1896 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1955
+ RLN + +DA +H +E+WDGK +N G+S F +KM D+IQRRCKNVISKLQ R +K
Sbjct: 1911 SSRLNSVTRSADDAVEHSRENWDGKQSNTGGNSGFGSKMPDIIQRRCKNVISKLQSRTDK 1970
Query: 1956 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015
EGHQIVPLLTDLWKR+ S SG NNILDLRKIDQR+DRLEYNGVMELV DVQFMLKG
Sbjct: 1971 EGHQIVPLLTDLWKRMGNSSLPSGVSNNILDLRKIDQRIDRLEYNGVMELVFDVQFMLKG 2030
Query: 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQT 2075
AMQFYGFSHEVR EA+KVHDLFFD+LKIAFPDTDFREAR+ALSF P S++ +T R+
Sbjct: 2031 AMQFYGFSHEVRFEAKKVHDLFFDILKIAFPDTDFREARNALSFQSPGSSAAAT--MRER 2088
Query: 2076 TVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQ-IPQKESRLGSGSGSSREQ 2134
GQ KR K++++M+ PP K RG V E R I QKE+R GSGSG S++Q
Sbjct: 2089 PAGQIKRQKMVHDMDTDSGPPHKSLHRGPVSGEETRATRGHLIAQKETRFGSGSG-SKDQ 2147
Query: 2135 SQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLG-RNIKSPGLGLVPK 2189
Q ++ P HPGELVICKKK KDREKS+VKPR+ S GPVSPP G R I+SP L VPK
Sbjct: 2148 YQIEEPPLLTHPGELVICKKKXKDREKSIVKPRTGSGGPVSPPPSGARGIRSPVLSSVPK 2207
Query: 2190 DMRHTQQTTHQHGWANQPAQPANG-GSGAVGWANPVKRLRTDAGKRRPSQL 2239
D + +Q GW NQP Q ANG G G V WANPVKRLRTDAGKRRPS +
Sbjct: 2208 DSKQSQ------GWPNQP-QSANGSGGGPVSWANPVKRLRTDAGKRRPSHI 2251
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568407|ref|XP_003552402.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3081 bits (7988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1581/2209 (71%), Positives = 1820/2209 (82%), Gaps = 63/2209 (2%)
Query: 50 RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAI 109
RQ FQQQ+LRKP+G+EA LAYQ G L G+ G NF P SMQ PQQSRKF D AQ +
Sbjct: 58 RQSFQQQLLRKPEGSEAFLAYQAG-LQGVFGSNNF--PSSSMQLPQQSRKFVDLAQHGS- 113
Query: 110 SQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDM 168
N+ QGVE Q+LNPV AY QYALQA QQKSA +QSQQQ K+GMLGP+S KDQ+M
Sbjct: 114 -----NQVQGVEQQMLNPVQAAYFQYALQASQQKSALAMQSQQQPKVGMLGPSSVKDQEM 168
Query: 169 RMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
RMGNLKMQ+L+SMQ+ NQ QASSS+NSSE F GEK++EQ QQ DQK E SQ
Sbjct: 169 RMGNLKMQDLMSMQAVNQVQASSSRNSSEHFTWGEKRVEQGQQLAPDQKSEGNSSSQGPA 228
Query: 229 GGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIA 285
G M NIIRP+QA QQSI N NQ+AMAAQL QAWA ERNIDLS PANA+L+A
Sbjct: 229 VGNLMPGNIIRPVQALATQQSIPNTMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMA 288
Query: 286 QLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGS 345
QLIP+MQSRIV KAN++N+GA SSPVPVS QQVTSP +A E+S HANSSSDVS QSGS
Sbjct: 289 QLIPLMQSRIVQQPKANDTNLGAMSSPVPVSNQQVTSPAVASESSAHANSSSDVSAQSGS 348
Query: 346 AKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQ 405
AKAR T PS L SA + ++ ++++ QQFS+HGRD Q +Q V NG+P +HP Q
Sbjct: 349 AKARQTAPPSHLSPPISAGIASSSSDMAAQQFSLHGRDAQGSLKQSVLTINGMPSVHPQQ 408
Query: 406 TSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLA 464
+S NM G D PL VK +SSG E ++MQY+RQL++S+ Q+ +++G S N+ +QGG
Sbjct: 409 SSANMNLGADHPLNVKTSSSGSEPAKMQYIRQLSQSTSQAGGLTNEGGSGNHPKTQGG-P 467
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQ-QQPAQQQF 523
+QMPQQR GFTK QLHVLKAQILAFRRLKK EG LPQELLRAI+PP L+LQ QQP +
Sbjct: 468 SQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSE- 526
Query: 524 LPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG- 582
NQ++ +G I + R E N KD+Q +SS N ++ K+E + D+ + V+ V
Sbjct: 527 ---GAQNQEKSAGNIVAEHPRQNEVNAKDSQPISSINGKNSSKQEVFVRDENSTVTAVQV 583
Query: 583 QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA-PQV 641
QG VTKE A GKEEQQ+ S KSDQE E G+ RT +++ D+GK+VA PQ
Sbjct: 584 QGTPRVTKESA-----GKEEQQSVACSAKSDQESEHGIGRTPVRNELVLDKGKAVAAPQA 638
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
S DA+Q+ KPAQA+ Q KDVG+ RKYHGPLFDFPFFTRKHDS GS+ M+N+ NNL+L
Sbjct: 639 SVNDAMQLNKPAQASAVSQTKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINN-NNLSL 697
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDL 761
AYDVK+LL EEG+EVL K+R+E+LKKI G+LAVNLERKRIRPDLVLRLQIE+KKLRLLDL
Sbjct: 698 AYDVKELLFEEGIEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDL 757
Query: 762 QSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
Q+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ+A+REKQLKSI QWR
Sbjct: 758 QARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWR 817
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL 881
KKLLE HWAIRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDV+RYREMLL
Sbjct: 818 KKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLL 877
Query: 882 EQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGL 941
EQQTSI GDAAERYAVLS+FLTQTEEYL+KLGSKITAAKNQQEVEEAA AAAAAARLQGL
Sbjct: 878 EQQTSIQGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGL 937
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
SEEEVR+AAACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAV+E+V+ QPSMLRAGTL
Sbjct: 938 SEEEVRAAAACAGEEVMIRNRFMEMNAPKDNSSVSKYYSLAHAVSEKVVCQPSMLRAGTL 997
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061
RDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV
Sbjct: 998 RDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1057
Query: 1062 LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKV 1120
+VNWKSEL+ WLPSVSCI+Y G KD RS+L+SQ + A+KFNVLVTTYEFIMYDR++LSK+
Sbjct: 1058 MVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKI 1117
Query: 1121 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1180
DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
Sbjct: 1118 DWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1177
Query: 1181 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1240
N+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
Sbjct: 1178 NKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1237
Query: 1241 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300
PKVSIVLRC+MSA+QSAIYDW+K+TGTLR+DPE E ++QKNP YQAK YKTLNNRCMEL
Sbjct: 1238 PKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMEL 1297
Query: 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1360
RKTCNHP LNYP +LS + +VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD+LE
Sbjct: 1298 RKTCNHPSLNYPLLGELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLE 1357
Query: 1361 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420
+YL WR+LVYRRIDGTT+L+DRESAI+DFNS DSDCFIFLLSIRAAGRGLNLQSADTV+I
Sbjct: 1358 DYLNWRRLVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVI 1417
Query: 1421 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1480
YDPDPNPKNEEQAVARAHRIGQKREV+VIYMEAVVDKISSHQKEDELRSGGTVD+ED+L
Sbjct: 1418 YDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDELV 1477
Query: 1481 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1540
GKDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQE
Sbjct: 1478 GKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQEN 1537
Query: 1541 VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN 1600
VHDVPSLQEVNRMIARSE+EVELFDQMDEE W E++ ++D+VP+WLRA+T+EVNA IA
Sbjct: 1538 VHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAA 1597
Query: 1601 LSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGY 1659
LSK+PSKN L G +IG++S E+ +ER+RG PKGKK+PNYKE++DE GEYSEA+S++RN
Sbjct: 1598 LSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHPNYKELEDENGEYSEANSEDRNED 1657
Query: 1660 PVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEA 1719
Q EGE GEFEDD YSGA G L EEDG + GY+ SEN RNNHVVEEA
Sbjct: 1658 SAQ--EGENGEFEDDGYSGADGNRL------EEDGLTSDAGYEIALSSENARNNHVVEEA 1709
Query: 1720 GSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMD 1778
GSSGSSS+S+RLT+ VSP VS +KFGSLSAL+ARPGS+SK M DELEEGEI VSGDSHMD
Sbjct: 1710 GSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDARPGSISKIMGDELEEGEIVVSGDSHMD 1769
Query: 1779 HQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSSL 1836
HQQSGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH +ERPE++S ++ L RG+SS+
Sbjct: 1770 HQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHAMERPEDKSGSEMISLQRGESSV 1829
Query: 1837 LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 1896
L D KY Q R D E K+ G+SN+ +HD++E S K+++ LPSRKIAN+ K S K+
Sbjct: 1830 LA---DYKYQIQKRIDPESKSFGDSNASKHDKNEASLKNKQKLPSRKIANSSKLHGSPKS 1886
Query: 1897 GRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKE 1956
RLNC +ED +H ESW+GK N +GSS K +++IQR CKNVISKLQRRI+KE
Sbjct: 1887 NRLNCTSAPSEDGNEHPTESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRRIDKE 1946
Query: 1957 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016
GHQIVPLLTDLWKR+E SG+ G+GNN+LDLRKIDQR+DR++Y+GVMELV DVQFML+GA
Sbjct: 1947 GHQIVPLLTDLWKRMENSGHAGGSGNNLLDLRKIDQRIDRMDYSGVMELVFDVQFMLRGA 2006
Query: 2017 MQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT--GPLSTSVSTPSPRQ 2074
M FYG+S+EVR+E RKVHDLFFD+LKIAFPDTDF EAR ALSF+ P T+ SPRQ
Sbjct: 2007 MHFYGYSYEVRTEGRKVHDLFFDILKIAFPDTDFGEARGALSFSSQAPAGTAA---SPRQ 2063
Query: 2075 TTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQ 2134
TVG SKRH++ N+ E P P QK Q GS E++R + +PQK SR +GS S+REQ
Sbjct: 2064 GTVGPSKRHRMTNDAETDPCPSQKLSQSGSTSNGENARFKGHLPQKNSR--TGSSSAREQ 2121
Query: 2135 SQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLGRNIKSPGLGLVPKD 2190
Q D+ P HPG+LV+CKKKR DR+KS+ K R+ S GP+SPPS I+SPG G PKD
Sbjct: 2122 PQQDNPPLLAHPGQLVVCKKKRNDRDKSLGKGRTGSTGPISPPSA---IRSPGSGSTPKD 2178
Query: 2191 MRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 2239
R QQ G +QP+Q +NG G+VGWANPVKRLRTD+GKRRPS +
Sbjct: 2179 ARLAQQ-----GRGSQPSQHSNGSGGSVGWANPVKRLRTDSGKRRPSHM 2222
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531981|ref|XP_003534554.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3036 bits (7870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1570/2211 (71%), Positives = 1814/2211 (82%), Gaps = 67/2211 (3%)
Query: 50 RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAI 109
RQ FQQQ+LRKP+G+EA LAYQ G L G+ G NF P SMQ PQQSRKF D AQ +
Sbjct: 58 RQSFQQQLLRKPEGSEAFLAYQAG-LQGVFGSNNF--PSSSMQLPQQSRKFVDLAQHGS- 113
Query: 110 SQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDM 168
N+ QGVE Q+LNP AY QYALQA QQKSA +QSQQQ K+GMLGP+S KDQ+M
Sbjct: 114 -----NQIQGVEQQMLNPAQAAYFQYALQASQQKSALEMQSQQQPKMGMLGPSSVKDQEM 168
Query: 169 RMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
RMGNLKMQ+L+SM + NQAQASSS+NSSE F RGEK++EQ QQ DQK E SQ +
Sbjct: 169 RMGNLKMQDLMSMPAVNQAQASSSRNSSEHFTRGEKRVEQGQQLAPDQKSEGNSSSQGAV 228
Query: 229 GGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIA 285
G M+ NIIRP+Q QQSI N+ NQ+AMAAQL QAWA ERNIDLS PANA+L+A
Sbjct: 229 GNL-MSGNIIRPVQDLATQQSIPNSMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMA 287
Query: 286 QLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGS 345
QLIP+MQSR+V KAN++N+G+ SSP+PVS QQVTSP +A E+S HA+SSSDVS QSGS
Sbjct: 288 QLIPLMQSRMVQQPKANDTNLGSLSSPIPVSNQQVTSPAVASESSAHAHSSSDVSAQSGS 347
Query: 346 AKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQ 405
AKAR T PS L SA + ++ ++++ QFS+HGRD Q +Q V NG+P +HP Q
Sbjct: 348 AKARQTAPPSHLSPPISAGIASSSSDMAALQFSLHGRDAQGSLKQSVLTVNGMPSVHPQQ 407
Query: 406 TSLNMTPGVDQPLPVKNSS-GPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLA 464
+S NM G D PL K+SS G E +MQY+RQLN+S+ Q+ +++G S N+ +QGG
Sbjct: 408 SSANMNLGADHPLNAKSSSSGSEPVKMQYIRQLNQSASQAGGLTNEGGSGNHTKTQGG-P 466
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQ-QQPAQQQF 523
+QMPQQR GFTK QLHVLKAQILAFRRLKK EG LPQELLRAI+PP L+LQ QQP +
Sbjct: 467 SQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSE- 525
Query: 524 LPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG- 582
NQ++ +G I +Q R E N K++Q +SS N + K+E + D+ + V+ V
Sbjct: 526 ---GAQNQEKSAGNIVAEQPRQNEVNAKESQPISSINGKISSKQEVFVRDENSPVTAVHL 582
Query: 583 QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA-PQV 641
Q VTKE A G+EEQQ+ + KSDQE E G+ R ++ D+GK+VA PQ
Sbjct: 583 QPTPPVTKESA-----GQEEQQSVACAPKSDQESEHGIGR----NELVLDKGKAVAAPQA 633
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
S DA+Q+ KPAQA+T QPKDVG+ RKYHGPLFDFPFFTRKHDS GS+ M+N+ NNL+L
Sbjct: 634 SVTDAMQLNKPAQASTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINN-NNLSL 692
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDL 761
AYDVK+LL EEG+EVL K+R+E+LKKI G+LAVNLERKRIRPDLVLRLQIE+KKLRLLDL
Sbjct: 693 AYDVKELLFEEGMEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDL 752
Query: 762 QSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
Q+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ+A+REKQLKSI QWR
Sbjct: 753 QARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWR 812
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL 881
KKLLE HWAIRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDV+RYREMLL
Sbjct: 813 KKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLL 872
Query: 882 EQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGL 941
EQQTSI GDAAERYAVLS+FL+QTEEYL+KLGSKITAAKNQQEVEEAA AAAAAARLQGL
Sbjct: 873 EQQTSIEGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGL 932
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
SEEEVR AAACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAV+E+V+ QPSMLRAGTL
Sbjct: 933 SEEEVRVAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVSEKVVCQPSMLRAGTL 992
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061
RDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV
Sbjct: 993 RDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1052
Query: 1062 LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKV 1120
+VNWKSELH WLPSVSCI+Y G KD RS+L+SQ + A+KFNVLVTTYEFIMYDR++LSK+
Sbjct: 1053 MVNWKSELHTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKI 1112
Query: 1121 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1180
DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
Sbjct: 1113 DWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1172
Query: 1181 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1240
N+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
Sbjct: 1173 NKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1232
Query: 1241 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300
PKVSIVLRC+MSA+QSAIYDW+K+TGTLR+DPE E ++QKNP YQAK YKTLNNRCMEL
Sbjct: 1233 PKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMEL 1292
Query: 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1360
RKTCNHP LNYP S+LS + +VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD+LE
Sbjct: 1293 RKTCNHPSLNYPLLSELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLE 1352
Query: 1361 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420
+YL WR+LVYRRIDGTTSL+DRESAI+DFNS DSDCFIFLLSIRAAGRGLNLQSADTV+I
Sbjct: 1353 DYLNWRRLVYRRIDGTTSLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVI 1412
Query: 1421 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1480
YDPDPNPKNEEQAVARAHRIGQKREV+VIYMEAVVDKISSHQKEDE+RSGGTVD+ED+L
Sbjct: 1413 YDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDEVRSGGTVDMEDELV 1472
Query: 1481 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1540
GKDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQE
Sbjct: 1473 GKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQEN 1532
Query: 1541 VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN 1600
VHDVPSLQEVNRMIARSE+EVELFDQMDEE W E++ ++D+VP+WLRA+T+EVNA IA
Sbjct: 1533 VHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAA 1592
Query: 1601 LSKKPSKNILFGSNIGVDSGE-IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNG 1658
LSK+P KN L G ++ ++S E + +ER+RG PKGKK+PNYKE++DE GEYSEASS++RN
Sbjct: 1593 LSKRPLKNTLLGGSVAIESSEVVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNE 1652
Query: 1659 YPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEE 1718
Q GEIGEFEDD SGA G L EEDG + GY+ R SEN RNNHVVEE
Sbjct: 1653 DSAQ---GEIGEFEDDVCSGADGNRL------EEDGLTSDAGYEIARSSENARNNHVVEE 1703
Query: 1719 AGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1777
AGSSGSSS+S+RLT+ VSP VS +KFGSLSAL++RPGS+SK M DELEEGEIAVSGDSHM
Sbjct: 1704 AGSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDSRPGSISKIMGDELEEGEIAVSGDSHM 1763
Query: 1778 DHQQSGSWTHDRDEGEDEQVL-QPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSS 1835
DHQQSGSW HDRDEGEDEQVL QPKIKRKRS+RVRPRH +ER E++S + L RG+SS
Sbjct: 1764 DHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSLRVRPRHAMERLEDKSGNEIISLQRGESS 1823
Query: 1836 LLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN---LPSRKIANAPKSRA 1892
LL D KY Q R D E K+ G+SN+ + D++E S S +N L SRK+AN K
Sbjct: 1824 LLA---DYKYQIQTRIDPESKSFGDSNASKRDKNESSLTSLKNKQKLSSRKVANTSKLHG 1880
Query: 1893 SLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRR 1952
S K+ RLNC +ED +H +ESW+GK N +GSS K +++IQR CKNVISKLQRR
Sbjct: 1881 SPKSNRLNCTSAPSEDGNEHPRESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRR 1940
Query: 1953 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012
I+KEGHQIVPLLTDLWKRIE SG+ G+GN++LDL KIDQR+DR++Y+GVMELV DVQFM
Sbjct: 1941 IDKEGHQIVPLLTDLWKRIENSGHAGGSGNSLLDLHKIDQRIDRMDYSGVMELVFDVQFM 2000
Query: 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSP 2072
L+GAM FYG+S+EVR+EARKVHDLFFD+LKIAFPDTDF EAR ALSF+ + + SP
Sbjct: 2001 LRGAMHFYGYSYEVRTEARKVHDLFFDILKIAFPDTDFVEARGALSFSSQVPAGTAASSP 2060
Query: 2073 RQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSR 2132
RQ TVG SKRH++ N+ E P P QKP Q GS E++R + +PQK SR +GSGS+R
Sbjct: 2061 RQVTVGPSKRHRVTNDAETDPCPSQKPSQSGSTTNGENTRFKGHLPQKNSR--TGSGSAR 2118
Query: 2133 EQSQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLGRNIKSPGLGLVP 2188
EQ Q D+ P HPG+LV+CKKKR +R+KS+ K R+ S GPVSPPS I+SPG G P
Sbjct: 2119 EQPQQDNPPLLAHPGQLVVCKKKRNERDKSLGKGRTGSTGPVSPPSAA--IRSPGSGSTP 2176
Query: 2189 KDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 2239
KD R QQ G +QP+Q +NG +G+VGWANPVKRLRTD+GKRRPS +
Sbjct: 2177 KDARLAQQ-----GRVSQPSQHSNGSAGSVGWANPVKRLRTDSGKRRPSHM 2222
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2239 | ||||||
| TAIR|locus:2062999 | 2193 | BRM "AT2G46020" [Arabidopsis t | 0.740 | 0.756 | 0.658 | 0.0 | |
| POMBASE|SPAC1250.01 | 1199 | snf21 "ATP-dependent DNA helic | 0.212 | 0.396 | 0.457 | 2.2e-129 | |
| ASPGD|ASPL0000042729 | 1407 | AN2278 [Emericella nidulans (t | 0.305 | 0.486 | 0.354 | 2.3e-129 | |
| UNIPROTKB|D4AA07 | 1262 | Smarca4 "Transcription activat | 0.294 | 0.522 | 0.389 | 1e-120 | |
| TAIR|locus:2150270 | 1064 | CHR23 "chromatin remodeling 23 | 0.217 | 0.456 | 0.347 | 4.3e-119 | |
| DICTYBASE|DDB_G0271052 | 3247 | snf2b "SNF2-related protein Sn | 0.207 | 0.142 | 0.461 | 2.8e-117 | |
| UNIPROTKB|P51532 | 1647 | SMARCA4 "Transcription activat | 0.294 | 0.400 | 0.392 | 3.1e-117 | |
| CGD|CAL0003962 | 1303 | orf19.239 [Candida albicans (t | 0.298 | 0.513 | 0.363 | 1.6e-116 | |
| UNIPROTKB|Q9HBD4 | 1679 | SMARCA4 "SMARCA4 isoform 2" [H | 0.274 | 0.366 | 0.408 | 7.2e-116 | |
| UNIPROTKB|F1M6Y4 | 1618 | Smarca4 "Transcription activat | 0.289 | 0.400 | 0.381 | 1e-115 |
| TAIR|locus:2062999 BRM "AT2G46020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5412 (1910.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 1121/1703 (65%), Positives = 1265/1703 (74%)
Query: 197 EQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIXXXXXX 256
+QF RGE+Q E QQ ++ K P+ QQ GQ M N+IRPMQA Q QQ +
Sbjct: 194 DQFARGERQTESSSQQRNETKSHPQ---QQVGTGQLMPGNMIRPMQAPQAQQLVNNMGNN 250
Query: 257 XXXXXX---XXXXXXXERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPV 313
ERNIDLS PANAS Q+ I+Q+R+ A KA E N+ + S +
Sbjct: 251 QLAFAQQWQAMQAWARERNIDLSHPANAS---QMAHILQARMAAQQKAGEGNVASQSPSI 307
Query: 314 PVSKQQVTSPTIAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXIS 373
P+S Q +S + GENSPHAN AKAR +S ST+S +
Sbjct: 308 PISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGSFASTSSPRMVNP----A 363
Query: 374 LQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP-ENSQMQ 432
+ FS GR+N + R V NG+P +P QTS N TP +DQ K S GP E+ QMQ
Sbjct: 364 MNPFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVLDQNASTKKSLGPAEHLQMQ 423
Query: 433 YLRQLNRSSPQSAIPXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRL 492
RQLN +P P Q G TQ QQR GFTK QLHVLKAQILAFRRL
Sbjct: 424 QPRQLNTPTPNLVAPSDTGPLSNSSL-QSGQGTQQAQQRSGFTKQQLHVLKAQILAFRRL 482
Query: 493 KKGEGTLPQELLRAIVXXXXXXXXXXXXXXXXXXXVNNQDRVSGKIAEDQLRHLESNGKD 552
KKGEG+LP ELL+AI QDR S K EDQ R LE GK+
Sbjct: 483 KKGEGSLPPELLQAISPPPLELQTQRQISPAIGKV---QDRSSDKTGEDQARSLEC-GKE 538
Query: 553 AQAVSSSNVQSLPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAPVVVPGKEEQQAPVSSVK 611
+QA +SSN KEE GD + A++ Q + KE V KEEQQ V VK
Sbjct: 539 SQAAASSNGPIFSKEEDNVGDTEVALTTGHSQLFQNLGKEATSTDVATKEEQQTDVFPVK 598
Query: 612 SDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYH 671
SDQ + + + SD AD+GK+VA D Q K P QA + PKD +ARKY+
Sbjct: 599 SDQGADSSTQKNPR-SDSTADKGKAVAS-----DGSQSKVPPQANSPQPPKDTASARKYY 652
Query: 672 GPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGI 731
GPLFDFPFFTRK DS GS A N++NNLTLAYD+KDL+ EEG E L KKR+++LKKI+G+
Sbjct: 653 GPLFDFPFFTRKLDSYGS-ATANANNNLTLAYDIKDLICEEGAEFLSKKRTDSLKKINGL 711
Query: 732 LAVNLERKRIRPDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIMAMPDRQYRKFVRLC 791
LA NLERKRIRPDLVLRLQIE EVD+QQQEIM+MPDR YRKFVRLC
Sbjct: 712 LAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEIMSMPDRPYRKFVRLC 771
Query: 792 ERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILR 851
ERQR+E+ RQV +QKA+REKQLK+I QWRKKLLEAHWAIRDARTARNRGVAKYHE++LR
Sbjct: 772 ERQRLEMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLR 831
Query: 852 EFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYK 911
EFSKRKDD RNKRMEALKNNDVERYREMLLEQQT++PGDAAERYAVLSSFLTQTE+YL+K
Sbjct: 832 EFSKRKDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHK 891
Query: 912 LGSKITXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRD 971
LG KIT RLQGLSEEEVR+AA CA EEV+IRNRF EMNAP++
Sbjct: 892 LGGKITATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEMNAPKE 951
Query: 972 GSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLG 1031
SSVNKYY+LAHAVNE V+RQPSML+AGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLG
Sbjct: 952 NSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLG 1011
Query: 1032 KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRL 1091
KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQRS+L
Sbjct: 1012 KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKL 1071
Query: 1092 FSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150
FSQ V A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ
Sbjct: 1072 FSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1131
Query: 1151 RRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210
RRLLLTGTPLQND P+VFDNRKAFHDWF+QPFQKEGP HN +DDWLETE
Sbjct: 1132 RRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETE 1191
Query: 1211 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1270
KKVI+IHRLHQILEPFMLRRRVEDVEGSLP KVS+VLRCRMSAIQSA+YDWIKATGTLRV
Sbjct: 1192 KKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRV 1251
Query: 1271 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW 1330
DP+DEK R QKNPIYQAK+Y+TLNNRCMELRK CNHPLLNYPYF+D SKDFLV+SCGKLW
Sbjct: 1252 DPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLW 1311
Query: 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390
ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFN
Sbjct: 1312 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN 1371
Query: 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450
D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIY
Sbjct: 1372 DPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIY 1431
Query: 1451 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1510
MEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN
Sbjct: 1432 MEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1491
Query: 1511 AGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 1570
AGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSL EVNRMIARSE+EVELFDQMDEE
Sbjct: 1492 AGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEE 1551
Query: 1571 FGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG- 1629
F W EEMT ++QVPKWLRAST+EVNAT+A+LSKKPSKN+L SN+ V G ERKRG
Sbjct: 1552 FDWTEEMTNHEQVPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGR 1611
Query: 1630 PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQ 1689
PK KK NYKE++D+I YSE SS+ERN +GA+G +NK +
Sbjct: 1612 PKSKKI-NYKEIEDDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGE 1670
Query: 1690 SEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSAL 1749
+ + PVC GYDY S + + N ++A R ++ SPVS QKFGSLSAL
Sbjct: 1671 FDGENPVC--GYDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSAL 1728
Query: 1750 EARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIR 1809
+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRSIR
Sbjct: 1729 DTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIR 1788
Query: 1810 VRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT--DTEMKAHGESNSLRHD 1867
+RPR T ER + ++ P + P Q+D Y ++LRT D+ +S+S
Sbjct: 1789 LRPRQTAERVDG---SEMPAAQ------PLQVDRSYRSKLRTVVDSHSSRQDQSDSSSRL 1839
Query: 1868 QSEPSSKSRRNLPSRKIANAPKS 1890
+S P+ K S+ ++PKS
Sbjct: 1840 RSVPAKKVAST--SKLHVSSPKS 1860
|
|
| POMBASE|SPAC1250.01 snf21 "ATP-dependent DNA helicase Snf21" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 2.2e-129, Sum P(5) = 2.2e-129
Identities = 231/505 (45%), Positives = 310/505 (61%)
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWML 1013
GE + MN P D ++ YY++AH + E V QPS+L G L++YQ+ GLQWM+
Sbjct: 372 GESAYDEDMDRRMN-PEDDRKID-YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMI 429
Query: 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWL 1073
SLYNN LNGILADEMGLGKT+Q ++LI +L+E K GP L+IVP + L NW E +W
Sbjct: 430 SLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWA 489
Query: 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133
PS+ I Y G R L QV F VL+TTYE+I+ DR LS++ W Y+IIDE RM
Sbjct: 490 PSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRM 549
Query: 1134 KDRESVLARDLDRYRCQR-RLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQP 1192
K+ +S L L Y R RL+LTGTPLQN+ P +F++ K+F +WF+ P
Sbjct: 550 KNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTP 609
Query: 1193 FQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS 1252
F G D L E+ +++I RLH++L PF+LRR +DVE LP KV V+RC+MS
Sbjct: 610 FANTG---GQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMS 666
Query: 1253 AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312
+Q +Y +K G L V ED KR K I K L N M+L+K CNHP +
Sbjct: 667 GLQQKLYYQMKKHGMLYV--EDAKRG--KTGI------KGLQNTVMQLKKICNHPFV--- 713
Query: 1313 YFSDLSK---------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1363
F D+ + D L + GK +LDRIL KL R+GHR+L+F MT++++I+E+YL
Sbjct: 714 -FEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYL 772
Query: 1364 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 1423
+RQ Y R+DG+T +DR + FN ++ +FLLS RA G GLNLQ+ADTVII+D
Sbjct: 773 HYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDS 832
Query: 1424 DPNPKNEEQAVARAHRIGQKREVKV 1448
D NP + QA RAHRIGQ +EV++
Sbjct: 833 DWNPHQDLQAQDRAHRIGQTKEVRI 857
|
|
| ASPGD|ASPL0000042729 AN2278 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 2.3e-129, Sum P(6) = 2.3e-129
Identities = 259/731 (35%), Positives = 404/731 (55%)
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYH-ERILREFSKRKDDDR 861
+ + + M+++ L+ ++ +KL + RDAR +R + H + I+ ++ ++
Sbjct: 341 RATHRRMKKQSLRE-ARITEKLEKQQ---RDARESREKRKQDVHLQAIVNHGAELRETAS 396
Query: 862 NKRMEA--LKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXX 919
+R A L ++ ++ M E+Q + A +R L + E YL LG
Sbjct: 397 QQRQRAGKLGRMMLQHHQHMEREEQRRVERTAKQRLQALKA--NDEETYLKLLGQ----A 450
Query: 920 XXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRN---RFLEMNAPRDGSSVN 976
+L ++ R+ A GEE + + + +G
Sbjct: 451 KDSRISHLLNQTDGFLKQLAASVRQQQRNQAERYGEEHDFDDDDDEDIASGSDEEGEGRR 510
Query: 977 K--YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
K YY++AH + E + QPS+L GTL++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+
Sbjct: 511 KIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTI 570
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q ++LI +++E K N GP L+IVP + L NW E KW PSVS I Y G + R +
Sbjct: 571 QTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQN 630
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-RL 1153
+ F VL+TTYE+I+ DR LSK+ W ++I+DE RMK+ +S L+ L +Y R RL
Sbjct: 631 IRWGNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRL 690
Query: 1154 LLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
+LTGTPLQN+ P +F + K+F +WF+ PF G D L E+++
Sbjct: 691 ILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMD---LTEEEQL 747
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
++I RLH++L PF+LRR +DVE LP K V++CR SA+Q+ + + AT V +
Sbjct: 748 LVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQL-ATHNKMVVSD 806
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL------SKDFLVKSCG 1327
+ +V + L+N M+LRK CNHP + + D + D + ++ G
Sbjct: 807 GKGGKVGM---------RGLSNMLMQLRKLCNHPFV-FEQVEDQVNPGRGTNDLIWRTAG 856
Query: 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387
K +LDRIL K + TGHRVL+F MT++++I+E++L+ R + Y R+DG+T +DR +
Sbjct: 857 KFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLK 916
Query: 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447
FN+ DS+ F FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV+
Sbjct: 917 LFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 976
Query: 1448 VIYMEAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1505
++ + I+S+ E+++ R+ +D++ + ++ R+ + + ++ A
Sbjct: 977 ILRL------ITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETA 1030
Query: 1506 DEVINAGRFDQ 1516
+ AG D+
Sbjct: 1031 EGTDQAGDQDE 1041
|
|
| UNIPROTKB|D4AA07 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 1.0e-120, Sum P(4) = 1.0e-120
Identities = 279/716 (38%), Positives = 394/716 (55%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 527 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 586
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 587 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 646
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 647 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 706
Query: 1154 LLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN P +F + F WF+ PF G D L E+ +
Sbjct: 707 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEETI 761
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 762 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 821
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-----------L 1322
++ ++ + KTL N M+LRK CNHP + S+ L
Sbjct: 822 EKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL 874
Query: 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382
++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT EDR
Sbjct: 875 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 934
Query: 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442
+ FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIGQ
Sbjct: 935 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 994
Query: 1443 KREVKVIYM---EAVVDKISSHQKEDELRSGGTVDLEDDLAGK-DRYIGSIEGLIRNNIQ 1498
+ EV+V+ + +V +KI + K +L VD + AG D+ S E R +Q
Sbjct: 995 QNEVRVLRLCTVNSVEEKILAAAKY-KLN----VDQKVIQAGMFDQKSSSHER--RAFLQ 1047
Query: 1499 QY-KIDMADEVINAGRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPSLQEVNRMIAR 1556
+ + DE + + + D EE + +VP + VN+MIAR
Sbjct: 1048 AILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIAR 1107
Query: 1557 SEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEVNATIANLSKKPSKN 1608
E+E +LF +MD EE + R D++P W+ K+ +A + L+ + +
Sbjct: 1108 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD-DAEVERLTCEEEEE 1163
Query: 1609 ILFGSNIG----VDSGEIETER---KRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1657
+FG VD + TE+ K+ + +E+++E+ + + +R+
Sbjct: 1164 KMFGRGSRHRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQKKSSRKRKRD 1219
|
|
| TAIR|locus:2150270 CHR23 "chromatin remodeling 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 4.3e-119, Sum P(2) = 4.3e-119
Identities = 184/529 (34%), Positives = 289/529 (54%)
Query: 776 IMAMPDRQYR---KFVRLCERQRVELMRQVQTSQKAMR----EKQLKSISQWRKKLLEAH 828
+M +P R Y FV + Q R + +++ +R EK L +Q RK E
Sbjct: 167 MMRLPRRMYGVGDSFVMEADDQ----FRNKRDAERLLRLEEEEKNLIETTQ-RKFFAEVL 221
Query: 829 WAIRDART---ARNRGVAKYHERILREFSK-RKDDDRNKRME--ALKNNDVERYREMLLE 882
A+R+ + A +R + ++ + K R+ R +++ ALK++D E Y ++ E
Sbjct: 222 NAVREFQLQIQASHRRCKQRNDGVQAWHGKQRQRATRAEKLRIMALKSDDQEEYMKLAKE 281
Query: 883 QQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGL- 941
+ E+ L+ FL +T + LG+ + L +
Sbjct: 282 SKN-------EK---LTLFLEETNKIFVSLGAAVQRQKDAKLSENTKLLKGSESDLSDVD 331
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA-HAVNERVMRQPSMLRAGT 1000
+ E+V A E++ + + N +G + ++LA H++ E+V +QPS+L+ G
Sbjct: 332 APEDVLPAQDI---EIIDSDNNDDSNDLLEGE---RQFNLAIHSIQEKVTKQPSLLQGGE 385
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR YQ+ GLQWM+SLYNN NGILADEMGLGKT+Q +ALIAYL+E K +GPHLI+ P A
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKA 445
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKV 1120
VL NW++E W PS+S Y G+K++R+ + +++A KFNVL+T Y+ IM D++ L K+
Sbjct: 446 VLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIMRDKAFLKKI 505
Query: 1121 DWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 1179
DW Y+I+DE R+K+ E LA+ L YR +RRLLLTGTP+QN P +F
Sbjct: 506 DWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIF 565
Query: 1180 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 1239
++ F +WF+ PF + G D E++++II+RLH ++ PF+LRR+ +VE L
Sbjct: 566 NSIHNFEEWFNTPFAECGSASLTD------EEELLIINRLHHVIRPFLLRRKKSEVEKFL 619
Query: 1240 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1288
P K ++L+C MSA Q Y + G + + + K + +N Q +
Sbjct: 620 PGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLR 668
|
|
| DICTYBASE|DDB_G0271052 snf2b "SNF2-related protein Snf2a" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 2.8e-117, Sum P(9) = 2.8e-117
Identities = 221/479 (46%), Positives = 308/479 (64%)
Query: 973 SSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGK 1032
S + YYS AH++ E ++ QP++L G L+ YQ+ GLQWM+SLYNNKLNGILADEMGLGK
Sbjct: 1683 SKAHSYYSKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGK 1742
Query: 1033 TVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLF 1092
T+Q +AL++YL+E K N GP L++VP + L NW E KW P V + Y G K R F
Sbjct: 1743 TIQTIALVSYLIEVKKNNGPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKF 1802
Query: 1093 SQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1150
+ +A +FN +VTTYE+I+ D++ LSK+ W Y+I+DE RMK+ S L+ L Y +
Sbjct: 1803 EEFIAPGQFNAVVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSR 1862
Query: 1151 RRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210
RLLLTGTPLQN P +FD + F WF+ PF + G ++ E
Sbjct: 1863 YRLLLTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNE-----E 1917
Query: 1211 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1270
++++II RLH++L PF+LRR ++VE LP KV VL+C MSA Q+ +YD IK G ++
Sbjct: 1918 EQLLIIQRLHKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKL 1977
Query: 1271 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW 1330
NP K+ K L N ++LRK CNHP L Y ++ D L++ GK
Sbjct: 1978 ASSGG---ADGNP----KLAKGLKNTYVQLRKICNHPYLFYDDEYNID-DNLIRYAGKFD 2029
Query: 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390
+LDR+L KL+ GHRVL+FS MT+L++ILE + ++ + R+DG+T ++R + FN
Sbjct: 2030 LLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFN 2089
Query: 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449
+ +S+ FIF+LS RA G GLNLQ+ADTVII+D D NP+ + QA RAHRIGQK+ V+V+
Sbjct: 2090 APNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVL 2148
|
|
| UNIPROTKB|P51532 SMARCA4 "Transcription activator BRG1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 3.1e-117, Sum P(4) = 3.1e-117
Identities = 280/713 (39%), Positives = 394/713 (55%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 847
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 1154 LLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN P +F + F WF+ PF G D L E+ +
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEETI 962
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 963 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1022
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-----------L 1322
++ ++ + KTL N M+LRK CNHP + S+ L
Sbjct: 1023 EKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL 1075
Query: 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382
++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT EDR
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Query: 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442
+ FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIGQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195
Query: 1443 KREVKVIYM---EAVVDKISSHQKEDELRSGGTVDLEDDLAGK-DRYIGSIEGLIRNNIQ 1498
+ EV+V+ + +V +KI + K +L VD + AG D+ S E R +Q
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKY-KLN----VDQKVIQAGMFDQKSSSHER--RAFLQ 1248
Query: 1499 QY-KIDMADEVINAGRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPSLQEVNRMIAR 1556
+ + DE + + + D EE + +VP + VN+MIAR
Sbjct: 1249 AILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIAR 1308
Query: 1557 SEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEVNATIANLSKKPSKN 1608
E+E +LF +MD EE + R D++P W+ K+ +A + L+ + +
Sbjct: 1309 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD-DAEVERLTCEEEEE 1364
Query: 1609 ILFGSNIG----VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1657
+FG VD + TE K+ K + +E+++E+ + + +R+
Sbjct: 1365 KMFGRGSRHRKEVDYSDSLTE-KQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1416
|
|
| CGD|CAL0003962 orf19.239 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1081 (385.6 bits), Expect = 1.6e-116, Sum P(4) = 1.6e-116
Identities = 263/723 (36%), Positives = 407/723 (56%)
Query: 956 EVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSL 1015
EV + N+ + R+ + YY +AH + E++ QP++L G L++YQ+ GL+WM+SL
Sbjct: 459 EVAVENKSDDKAELREKTD---YYEVAHRIKEKITEQPTILVGGKLKEYQMKGLEWMVSL 515
Query: 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS 1075
YNN LNGILADEMGLGKT+Q ++L+ YL+E K + LIIVP + + NW E KW PS
Sbjct: 516 YNNHLNGILADEMGLGKTIQSISLVTYLIE-KKHENKFLIIVPLSTITNWTLEFEKWAPS 574
Query: 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1135
+ I Y G++ QR L + F VL+TTYE+++ +R L+K + ++IIDE RMK+
Sbjct: 575 IKVIVYKGSQQQRRSLQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKN 634
Query: 1136 RESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQ 1194
+S L++ L Y + + RL+LTGTPLQN+ P +F++ K+F DWF+ PF
Sbjct: 635 AQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFA 694
Query: 1195 KEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 1254
G + L E+ +++I RLH++L PF+LRR +DVE LP KV VL+C +S +
Sbjct: 695 NTGAQEKIE---LTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGL 751
Query: 1255 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 1309
Q +Y + L V + K+ I K LNN+ M+LRK CNHP +
Sbjct: 752 QYVLYQQMLKHNALFVGADVGGA---KSGI------KGLNNKIMQLRKICNHPFVFEEVE 802
Query: 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1369
+ S L+ D + + GK +LDR+L K +++GHRVL+F MT+++DI+E++L+W+ +
Sbjct: 803 SVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMK 862
Query: 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1429
Y R+DG+T E+R+ + FN+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP
Sbjct: 863 YLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQ 922
Query: 1430 EEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQKED---ELRSGGTVDLEDDLAG 1481
+ QA RAHRIGQK EV+++ + ++V + I +HQK D ++ G D +
Sbjct: 923 DLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAEE 982
Query: 1482 KDRYIGSIEGLIRNNIQQYKID-MADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1540
++ ++ + N + D + D+ +N + EE ++ ++ DEER E
Sbjct: 983 QEAFLKRLLEADANGADNEENDSLDDDELN----EILARSEEEKVLFASM--DEERKSEK 1036
Query: 1541 VHDVPSLQEVNRMIAR-SEDEVELFDQMDEEFGWIEEM--TRYDQ---VPKWLRASTKEV 1594
V L E + + A +ED F++ ++E + + RYD +WL+A +
Sbjct: 1037 VPYKSRLIEKDELPAVFTEDISHHFEKKEKELSKMRDKKRVRYDDGLSEEQWLKAMDDD- 1095
Query: 1595 NATIANLSKKPSKNILFGS-NIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASS 1653
N T+ K+ + I N + G +E + K G E DDE ++ EA+
Sbjct: 1096 NDTVEEAIKRKEERIAKRKRNKAIREGLLEEDIKDDEVG-------EEDDE--DFEEAAQ 1146
Query: 1654 DER 1656
+
Sbjct: 1147 PRK 1149
|
|
| UNIPROTKB|Q9HBD4 SMARCA4 "SMARCA4 isoform 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 7.2e-116, Sum P(4) = 7.2e-116
Identities = 271/664 (40%), Positives = 373/664 (56%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 847
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 1154 LLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN P +F + F WF+ PF G D L E+ +
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEETI 962
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 963 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1022
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-----------L 1322
++ ++ + KTL N M+LRK CNHP + S+ L
Sbjct: 1023 EKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL 1075
Query: 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382
++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT EDR
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Query: 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442
+ FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIGQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195
Query: 1443 KREVKVIYM---EAVVDKISSHQKEDELRSGGTVDLEDDLAGK-DRYIGSIEGLIRNNIQ 1498
+ EV+V+ + +V +KI + K +L VD + AG D+ S E R +Q
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKY-KLN----VDQKVIQAGMFDQKSSSHER--RAFLQ 1248
Query: 1499 QY-KIDMADEVINAGRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPSLQEVNRMIAR 1556
+ + DE + + + D EE + +VP + VN+MIAR
Sbjct: 1249 AILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIAR 1308
Query: 1557 SEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEVNATIANLSKKPSKN 1608
E+E +LF +MD EE + R D++P W+ K+ +A + L+ + +
Sbjct: 1309 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD-DAEVERLTCEEEEE 1364
Query: 1609 ILFG 1612
+FG
Sbjct: 1365 KMFG 1368
|
|
| UNIPROTKB|F1M6Y4 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1063 (379.3 bits), Expect = 1.0e-115, Sum P(5) = 1.0e-115
Identities = 268/702 (38%), Positives = 385/702 (54%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R Q
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ 847
Query: 1095 VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRL 1153
+ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RRL
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 1154 LLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
LLTGTPLQN P +F + F WF+ PF G D L E+ +
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEETI 962
Query: 1214 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE 1273
+II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 963 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1022
Query: 1274 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-----------L 1322
++ ++ + KTL N M+LRK CNHP + S+ L
Sbjct: 1023 EKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL 1075
Query: 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382
++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT EDR
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
Query: 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442
+ FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIGQ
Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195
Query: 1443 KREVKVIYM---EAVVDKISSHQK-----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIR 1494
+ EV+V+ + +V +KI + K + ++ G D + + ++ + ++
Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL---QAILE 1252
Query: 1495 NNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMI 1554
+ Q + DEV + +Q E L + D +R +E + P + R++
Sbjct: 1253 HEEQD---EEEDEVPDDETVNQMIARHEEEFDLFMRM-DLDRRREEARN-PKRKP--RLM 1305
Query: 1555 ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWL-RAST--KEVNATIANLSKKPSKNILF 1611
EDE+ + D+ +E +T ++ K R S KEV+ + + K+ K +
Sbjct: 1306 --EEDELPSWIIKDD--AEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKQL-- 1359
Query: 1612 GSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASS 1653
++ G +E E + + KK ++ D E G + +S
Sbjct: 1360 --KAAIEEGTLE-EIEEEVRQKKSSRKRKRDSEAGSSTPTTS 1398
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EVK6 | BRM_ARATH | 3, ., 6, ., 4, ., 1, 2 | 0.6730 | 0.9682 | 0.9886 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | 0.991 |
| 3rd Layer | 3.6.4 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2239 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 1e-129 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-100 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 1e-91 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-35 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 6e-28 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 4e-21 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-20 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-12 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 9e-11 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 3e-08 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-07 | |
| smart00951 | 36 | smart00951, QLQ, QLQ is named after the conserved | 5e-06 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 9e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.002 | |
| pfam11496 | 279 | pfam11496, HDA2-3, Class II histone deacetylase co | 0.003 | |
| PRK14701 | 1638 | PRK14701, PRK14701, reverse gyrase; Provisional | 0.004 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 433 bits (1114), Expect = e-129
Identities = 228/611 (37%), Positives = 341/611 (55%), Gaps = 86/611 (14%)
Query: 851 REFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERY-AVLSSFLTQTEEYL 909
E SKR + R K ++ K ++++ +L +Q +I D + L L QTE +
Sbjct: 55 AEISKR-EKARLKELKKQKKQEIQK---ILEQQNAAIDADMNNKGKGRLKYLLQQTEIFA 110
Query: 910 YKLGSKITAAKNQQEVEEAANAAAAAARLQG---LSEEEVRSAAACAGEEVMIRNRFLEM 966
+ +++A+A A R + L+EEE EE
Sbjct: 111 HFAKG-----------DQSASAKKAKGRGRHASKLTEEE--EDEEYLKEE---------- 147
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
DG + R++ QPS ++ G +RDYQ+ GL W++ LY N +NGILAD
Sbjct: 148 ---EDGLGGSG--------GTRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILAD 195
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++L+ YL E++G GPH+++ P + L NW +E+ ++ P + + + G +
Sbjct: 196 EMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPE 255
Query: 1087 QRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145
+R+ + + A KF+V VT++E + +++ L + W+YIIIDEA R+K+ S+L++ +
Sbjct: 256 ERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315
Query: 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1205
+ RLL+TGTPLQN+L ELW+LLN LLPE+F + + F +WF Q G +
Sbjct: 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF----QISGENDQQE-- 369
Query: 1206 WLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKAT 1265
++ +LH++L PF+LRR DVE LPPK +L+ MS +Q Y
Sbjct: 370 ---------VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY------ 414
Query: 1266 GTLRVDPEDEKRRVQKN--PIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDL 1317
K +QK+ + K L N M+LRK CNHP L PY +
Sbjct: 415 ----------KALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG- 463
Query: 1318 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1377
+ LV++ GK+ +LD++L KL+ RVL+FS MT+LLDILE+YL +R Y RIDG T
Sbjct: 464 --EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 521
Query: 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1437
EDR+++I FN S+ F+FLLS RA G G+NL +AD VI+YD D NP+ + QA RA
Sbjct: 522 GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581
Query: 1438 HRIGQKREVKV 1448
HRIGQK+EV+V
Sbjct: 582 HRIGQKKEVQV 592
|
Length = 1033 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-100
Identities = 128/312 (41%), Positives = 184/312 (58%), Gaps = 18/312 (5%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFKGNYGPHLIIVPNAVL 1062
YQ+ G+ W++SL +N L GILADEMGLGKT+Q +AL+A YL E K GP L++ P + L
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL--KFNVLVTTYEFIM---YDRSKL 1117
NW +E KW P++ + Y G +RS+L +A ++V++TTYE + S L
Sbjct: 61 HNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRKDKKLLSLL 120
Query: 1118 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPE 1177
+KV+W +++DEA R+K+ +S L + L + + + RLLLTGTP+QN+L+ELW+LLN L P
Sbjct: 121 NKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPG 180
Query: 1178 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 1237
F + K F +WF+ P N + E K+ I+RLH++L+PF+LRR +DVE
Sbjct: 181 PFGSFKVFEEWFNIPIANTADNKNKNL---EKGKE--GINRLHKLLKPFLLRRTKDDVEK 235
Query: 1238 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297
SLPPK VL C +S Q +Y + L + E +L N
Sbjct: 236 SLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVG-------IASLLNLI 288
Query: 1298 MELRKTCNHPLL 1309
M+LRK CNHP L
Sbjct: 289 MQLRKICNHPYL 300
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 319 bits (818), Expect = 1e-91
Identities = 185/529 (34%), Positives = 265/529 (50%), Gaps = 51/529 (9%)
Query: 999 GTLRDYQIVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY-GPHLII 1056
LR YQ+ G+ W+ L +N L GILAD+MGLGKTVQ +AL+ L+E Y GP LI+
Sbjct: 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIV 396
Query: 1057 VPNAVLVNWKSELHKWLPSVSCIY--------YVGAKDQRSRLFSQVAALKFNVLVTTYE 1108
VP ++L NWK E K+ P + + ++ L + F+V++TTYE
Sbjct: 397 VPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYE 456
Query: 1109 FI---MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLK 1165
+ + D L K++W +++DEA R+K+ +S + L + RL LTGTPL+N L
Sbjct: 457 LLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLG 516
Query: 1166 ELWSLLNL-LLPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223
ELWSLL L P + A F F +P Q E +D E + + I L ++L
Sbjct: 517 ELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAE-------EDIGPLEARELGIELLRKLL 569
Query: 1224 EPFMLRRRVEDVE--GSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQ 1280
PF+LRR EDVE LPPK+ VL C +S Q +Y ++ + ED +
Sbjct: 570 SPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL-EKAD 628
Query: 1281 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP-----------------YFSDLSKDFLV 1323
+ + LR+ CNHP L F L K +
Sbjct: 629 SDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQ 688
Query: 1324 KSCGKLWILDRIL---IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1380
S GKL LD +L + + H+VL+FS T +LD+LE+YL+ + Y R+DG+T +
Sbjct: 689 LSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAK 748
Query: 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440
R+ I FN+ D + +FLLS++A G GLNL ADTVI++DP NP E QA+ RAHRI
Sbjct: 749 RRQELIDRFNA-DEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807
Query: 1441 GQKREVKVIYMEAVVD---KISSHQKEDELRSGGTVDLEDDLAGKDRYI 1486
GQKR VKV + KI Q E + ++ + +
Sbjct: 808 GQKRPVKVYRLITRGTIEEKILELQ-EKKQELLDSLIDAEGEKELSKLS 855
|
Length = 866 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-35
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
LR YQ ++ +LS + ILA G GKT+ + + +G G L++VP
Sbjct: 8 PLRPYQKEAIEALLSGLRD---VILAAPTGSGKTLAALLPALEAL-KRGKGGRVLVLVPT 63
Query: 1060 AVLV-NWKSELHKWLPS---VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFI--MYD 1113
L W EL K PS Y G D + ++ + K ++LVTT + + +
Sbjct: 64 RELAEQWAEELKKLGPSLGLKVVGLYGG--DSKREQLRKLESGKTDILVTTPGRLLDLLE 121
Query: 1114 RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR-YRCQRRLLLTGTPLQNDLKELWSL 1170
KLS + +I+DEA R+ D L + L + + LLL+ TP + L
Sbjct: 122 NDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELF 181
Query: 1171 LNLLLPEVFDNRKAFHDWFSQ 1191
LN P D + Q
Sbjct: 182 LN--DPVFIDVGFTPLEPIEQ 200
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-28
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS--VSC 1078
+ +LA G GKT+ + I L+ G L++ P L N +E K L +
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELL-DSLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR 1136
Y +G + + ++ + K +++V T ++ + R KLS +I+DEA R+ ++
Sbjct: 61 GYLIGGTSIKQQE--KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118
Query: 1137 ES---VLARDLDRYRCQRRLLLTGTP 1159
L L + ++ LLL+ TP
Sbjct: 119 GFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 1316 DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1375
+ + L KL L +L + + G +VL+F K+LD L E L+ + + G
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHG 60
Query: 1376 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1435
S E+RE + DF + + L++ RG++L + VI YD +P + Q +
Sbjct: 61 DGSQEEREEVLKDFREGE---IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIG 117
Query: 1436 RAHRIGQKREVKVI 1449
RA R GQK ++
Sbjct: 118 RAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-21
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 1357 DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1416
+ L E L+ + R+ G S E+RE + FN+ L++ A RGL+L D
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIK---VLVATDVAERGLDLPGVD 57
Query: 1417 TVIIYDPDPNPKNEEQAVARAHRIG 1441
VIIYD +P + Q + RA R G
Sbjct: 58 LVIIYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 4e-20
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1361 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420
+ L+ + R+ G S E+RE + DF + S L++ AGRG++L + VI
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSK---VLVATDVAGRGIDLPDVNLVIN 57
Query: 1421 YDPDPNPKNEEQAVARAHRIG 1441
YD NP + Q + RA R G
Sbjct: 58 YDLPWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 1996
+Q K V+ KL H + R E Y + DL+ I ++++
Sbjct: 7 KLQELLKAVLDKLDS------HPLSWPFLKPVSRKEAPDYYDIIKKPM-DLKTIKKKLEN 59
Query: 1997 LEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044
+Y+ V E V+D M A + G EV +A+K+ F L+
Sbjct: 60 GKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
Length = 107 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 9e-11
Identities = 78/370 (21%), Positives = 108/370 (29%), Gaps = 48/370 (12%)
Query: 3 SGGGPSRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPD 62
+G GP + T P + + G QQ Q QQ + Q
Sbjct: 128 AGMGPHQMSRVGT---MQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAG------ 178
Query: 63 GNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQGVEH 122
G G G P G QPPQ + Q + Q
Sbjct: 179 ----------GMNQGQQG------PVGQQQPPQM---GQPGMPGGGGQGQMQQQGQPGGQ 219
Query: 123 QLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMG----NLKMQEL 178
Q NP Q +Q Q QQ + QA++G G Q +M + MQ+
Sbjct: 220 QQQNPQMQQQLQNQQQ-QQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQ 278
Query: 179 ISMQSANQAQASSSKNSSEQF----GRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMA 234
Q Q+Q N +Q G Q P Q + QQ + G
Sbjct: 279 PPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQ 338
Query: 235 ANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQAWALERNIDLSQPAN-ASLIAQLIPIMQS 293
M+ + Q Q A + N + Q +L I Q
Sbjct: 339 QLKQ--MKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQG 396
Query: 294 RIVANHKANESNMGAPSSPVPVSKQQVT-------SPTIAGENSPHANSSSDVSGQSGSA 346
+ AN + G SSP PV + Q P++ P + VSG +
Sbjct: 397 GLGAN-PMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPS 455
Query: 347 KARPTVSPSP 356
SPSP
Sbjct: 456 PPALMPSPSP 465
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-08
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 18/186 (9%)
Query: 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057
LR YQ L ++ + G++ G GKTV IA L L++V
Sbjct: 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLV 87
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYE--FIMYDR 1114
P L++ W L K+L I G ++ V V T +
Sbjct: 88 PTKELLDQWAEALKKFLLLNDEIGIYGGGEKELE--------PAKVTVATVQTLARRQLL 139
Query: 1115 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL 1174
+ ++ II DE + +L RL LT TP + D + L +L+
Sbjct: 140 DEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY-PRLGLTATPEREDGGRIGDLFDLI 198
Query: 1175 LPEVFD 1180
P V++
Sbjct: 199 GPIVYE 204
|
Length = 442 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 1029 GLGKTVQVMALIAYLMEFKGNYGPH--LIIVPNAVLVN-----WKSELHKWLPSVSCIYY 1081
G GKT+ L+ L G L++ P L K V+ +
Sbjct: 24 GSGKTL--AFLLPILQALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTG 81
Query: 1082 VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDW----KYIIIDEAQRM--KD 1135
+ +++R + A ++LV T ++ D + K+ K +++DEA R+
Sbjct: 82 GTSLKEQARKLKKGKA---DILVGTPGRLL-DLLRRGKLKLLKNLKLLVLDEAHRLLDMG 137
Query: 1136 RESVLARDLDRYRCQRR-LLLTGTP 1159
L L R R+ LLL+ T
Sbjct: 138 FGDDLEEILSRLPPDRQILLLSATL 162
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-07
Identities = 48/263 (18%), Positives = 73/263 (27%), Gaps = 28/263 (10%)
Query: 3 SGGGPSRNRAASTSSAAS--PSSSSSAVSTPHLGFD------SLQQQQQHQQQQQRQPFQ 54
G ++ ST S +S+ P L D + + + Q Q + QP
Sbjct: 87 VGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQP 146
Query: 55 QQILRKPDGNEAILA--YQVGSLPGLMGGGNF----ASPPGSMQPPQQSRKFFDFAQQHA 108
Q +K E + A Q P L PP PQQ + +
Sbjct: 147 QTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPP--EQPPGYP 204
Query: 109 ISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASV-LQSQQ--QAKLGMLGPASGKD 165
+ Q Q L QA Q L Q LQ Q M P
Sbjct: 205 -QPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 166 QDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQ 225
Q + Q Q Q + + +QPQ Q+ + +
Sbjct: 264 QQQQ-----QPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
Query: 226 QTLGGQGMAANIIRPMQAAQHQQ 248
Q + + + + A Q+
Sbjct: 319 QF---REQLVQLSQQQREALSQE 338
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
FT QL +L+AQILA++ L +P ELL+AI
Sbjct: 3 FTPAQLELLRAQILAYKYLLARNQPVPPELLQAI 36
|
QLQ is found at the N-terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions. Length = 36 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 1986 DLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2041
DL I +++ EY + E +DV+ + A + G + +A+K+ LF LL
Sbjct: 44 DLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Query: 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384
S K+ + +L+K R G + L+F++ + + + + I G T E+RE+
Sbjct: 266 SERKIAAVRGLLLKHAR-GDKTLIFASDVEHAYEIAKLFL-APGIVEAITGETPKEEREA 323
Query: 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQK 1443
+ F + L++++ G+++ AD +II P + + Q + R R K
Sbjct: 324 ILERFRTGGIK---VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGK 380
Query: 1444 REVKVIYMEAVVDK-----ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 1495
+ + V D I+ ++ +R G T L + I G+
Sbjct: 381 EDTLALDYSLVPDDLGEEDIARRRRLFLIRKGYTYRLLTADEEGELIPNLILGIKGY 437
|
Length = 442 |
| >gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 17/174 (9%)
Query: 1270 VDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF----SDLSKDF--LV 1323
+ K + K + K L + HP L ++ L + L
Sbjct: 35 CETSSSKEDIIKLLEDLTESIKLLFENLSLV---ATHPYLLIDHYMPKSLLLKEPPEHLA 91
Query: 1324 KSCGKLWILDRI--LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381
++ GK +L+ + L+ VL+ S K LD++E L + L Y+R+ G + E
Sbjct: 92 ETSGKFLVLNDLINLLIRSERDLHVLIISRSVKTLDLVEALLLGKGLNYKRLSGESLYE- 150
Query: 1382 RESAIVDFNSHDSDCFIFLLS---IRAAGRGLNLQSA-DTVIIYDPDPNPKNEE 1431
E+ V +I L + + L D +I +DP +
Sbjct: 151 -ENHKVSDKKGSLSLWIHLTTSDGLTNTDSSLLSNYKFDLIISFDPSLDTSLPS 203
|
This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus. Length = 279 |
| >gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.004
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-----NW 1065
W + K I+A G+GK+ A IA + KG II+P +LV
Sbjct: 87 WAKRILRGKSFSIVA-PTGMGKST-FGAFIALFLALKGKKC--YIILPTTLLVKQTVEKI 142
Query: 1066 KSELHKWLPSVSCIYYVG--AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWK 1123
+S K V +YY K ++ ++ F++LVTT +F+ + ++ + +
Sbjct: 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFD 202
Query: 1124 YIIIDEAQRMKDRESVL--ARDLDR 1146
+I +D D ++ L ++++DR
Sbjct: 203 FIFVD------DVDAFLKASKNIDR 221
|
Length = 1638 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2239 | |||
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.96 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.96 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.95 | |
| PTZ00110 | 545 | helicase; Provisional | 99.95 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.95 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.94 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.94 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.94 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.94 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.94 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.93 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.93 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.93 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.93 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.92 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.91 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.9 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.9 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.9 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.9 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.89 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.89 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.89 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.88 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.88 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.88 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.88 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.88 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.87 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.87 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.87 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.87 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.87 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.87 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.86 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.85 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.85 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.85 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.85 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.85 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.85 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.84 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.84 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.83 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.83 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.83 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.83 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.83 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.82 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.82 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.8 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.8 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.8 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.8 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.8 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.8 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.79 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.79 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.79 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.78 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.78 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.78 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.77 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.76 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.76 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.76 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.75 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.75 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.75 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.75 | |
| smart00297 | 107 | BROMO bromo domain. | 99.75 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.74 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.74 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.74 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.73 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.73 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.72 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.72 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.72 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.71 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.71 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.71 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.71 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.71 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.7 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.7 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.7 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.7 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.7 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.68 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.68 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.67 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.67 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.67 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.67 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.67 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.66 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.66 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.65 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.65 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.65 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.64 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.64 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.64 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.63 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.63 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.63 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.63 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.59 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.59 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.59 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.58 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.56 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.56 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.55 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.54 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.52 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.51 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.5 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.5 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.49 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.49 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.49 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.46 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.46 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.45 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.45 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.43 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.43 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.42 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.41 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.37 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.32 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.31 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.31 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.31 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.29 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.27 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.16 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.14 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 99.13 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.11 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 99.1 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.09 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.08 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.08 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.05 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.04 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.04 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.02 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 98.93 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.87 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 98.85 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 98.85 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 98.85 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.83 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 98.83 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 98.8 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 98.78 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.77 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 98.74 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.74 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.73 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.71 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.68 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.65 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 98.64 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.64 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.64 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 98.64 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.6 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.56 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.56 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 98.54 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 98.52 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.45 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.44 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 98.43 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 98.43 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.42 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.37 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.37 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.28 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.27 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.25 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.22 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.16 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 98.12 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.1 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 98.1 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.07 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 97.98 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.97 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 97.94 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 97.93 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 97.92 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 97.92 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 97.87 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 97.85 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.83 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 97.83 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 97.79 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 97.75 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 97.74 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 97.69 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 97.68 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 97.66 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 97.64 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 97.63 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 97.63 | |
| smart00297 | 107 | BROMO bromo domain. | 97.63 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 97.62 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 97.61 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 97.61 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.58 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 97.55 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 97.4 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.39 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 97.37 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 97.36 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 97.36 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 97.35 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 97.27 | |
| PF08880 | 37 | QLQ: QLQ; InterPro: IPR014978 QLQ is named after t | 97.25 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 97.23 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 97.18 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 97.17 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 97.16 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.04 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 96.94 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 96.94 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.92 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 96.89 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.81 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 96.75 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 96.71 | |
| PF07529 | 73 | HSA: HSA; InterPro: IPR006562 This domain of unkno | 96.48 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.35 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.21 | |
| smart00573 | 73 | HSA domain in helicases and associated with SANT d | 96.2 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.2 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.17 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.1 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.91 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 95.62 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.57 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.52 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 95.45 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 95.41 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.35 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.33 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.33 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 95.22 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.19 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 94.93 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 94.9 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 94.74 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 94.73 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 94.29 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 94.22 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 94.2 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 94.17 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.71 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 93.51 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 93.37 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 93.28 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 93.28 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 92.97 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 92.94 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 92.93 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.9 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 92.85 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 92.74 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 92.63 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 92.56 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 92.17 | |
| PRK06526 | 254 | transposase; Provisional | 92.04 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 91.95 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 91.79 | |
| PF13892 | 139 | DBINO: DNA-binding domain | 91.73 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 91.66 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 91.62 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.49 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 91.24 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 91.07 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 90.91 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 90.62 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 90.46 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 90.44 | |
| PRK08181 | 269 | transposase; Validated | 90.34 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 90.28 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 90.11 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 90.04 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 89.99 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 89.62 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 89.61 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 89.56 | |
| PRK08116 | 268 | hypothetical protein; Validated | 89.53 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 89.48 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 89.3 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 89.08 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 88.91 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 88.89 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 88.83 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 88.7 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 88.56 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 88.53 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 88.42 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 88.27 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 88.01 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 87.95 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 87.83 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 87.79 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 87.7 | |
| PF13173 | 128 | AAA_14: AAA domain | 87.21 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 87.07 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 87.04 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 87.02 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 86.96 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 86.82 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 86.8 | |
| PRK08727 | 233 | hypothetical protein; Validated | 86.65 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 86.56 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 86.5 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 86.37 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 86.26 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 86.09 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 85.84 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 85.65 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 85.49 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 85.3 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 85.27 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 85.24 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 85.24 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 85.2 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 85.09 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 84.87 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 84.51 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 84.24 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 84.11 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 84.02 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 83.97 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 83.87 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.73 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 83.56 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 83.4 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 83.39 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 83.0 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 82.92 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 82.88 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 82.87 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 82.78 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 82.19 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 82.05 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 81.68 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 81.63 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 81.15 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 81.15 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 80.86 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 80.7 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 80.7 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 80.31 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 80.3 |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-162 Score=1503.75 Aligned_cols=960 Identities=39% Similarity=0.594 Sum_probs=803.8
Q ss_pred cChHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H
Q 000101 703 YDVKDLLSEEGLEVLQK--KRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQE----I 776 (2239)
Q Consensus 703 ~d~~~~~~~~~~~~~~~--~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~----~ 776 (2239)
||+..+...++++++.+ .+.++++++++.+ .++++++|.||+++|||+++|++||..++.|+.. .
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~---------~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~ 198 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSL---------MGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSE 198 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcc---------hHHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccc
Confidence 99999999999988776 4899999988865 2689999999999999999999999999998643 3
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000101 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKAM-----REK---QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHER 848 (2239)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----r~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~ 848 (2239)
++++...|++-+++..+. .+++++++++||-+ |.+ ++.+++.|.++|.+.|+....+..+++++|..||.+
T Consensus 199 ~~~n~~~~~R~~~q~~~~-~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~ 277 (1157)
T KOG0386|consen 199 TALNPKAFKRGKRQTLSE-ARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHAN 277 (1157)
T ss_pred cccCHHHHhhhhhhhHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888876654 55566655554432 233 378999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhhHHhhhhHHHHHH
Q 000101 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA 928 (2239)
Q Consensus 849 ~~~~~~kr~e~~~~~r~~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~lL~qte~~l~~l~~~v~~~k~~q~~~~~ 928 (2239)
++++++|+.++.+|+||.+||.||+|+|++|++++| |.| |++||+||++|+.+|+..|..++.. .
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~K-------d~R---l~~LL~qt~~yl~sL~s~Vk~qk~~--~--- 342 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKLQDQKK-------DNR---LSQLLSQTDSYLPSLSSVVKGQKSE--N--- 342 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcc-------ccH---HHHhhhhhhHHHHHHHHHHHHhhcc--c---
Confidence 999999999999999999999999999999999986 444 7899999999999999988766530 0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhhhhhHHHhhhhhccCCCCCCchhhhhhhhhHhhhhhhccCCccccCCCChHHHHH
Q 000101 929 ANAAAAAARLQGL-SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIV 1007 (2239)
Q Consensus 929 ~~~~~~~~r~~gl-~~ee~~~~~~~~~ee~~i~~~f~e~~~p~~~s~~~kyy~lah~i~E~v~~qPs~L~ggtLRPYQle 1007 (2239)
.+. +..++......+..+ .+ ....+..+||.++|.|.|.+.+||+++.||+|++||+.
T Consensus 343 ----------~~~~~~~d~~~i~~~ak~~---------~~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~ 401 (1157)
T KOG0386|consen 343 ----------PDANSASDISGISGSAKAD---------VD--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLH 401 (1157)
T ss_pred ----------cccchhhhhhhhhhhhcch---------hh--hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhh
Confidence 000 000000000000000 00 02234578999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhh
Q 000101 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQ 1087 (2239)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~ 1087 (2239)
||+||+++|+|++|||||||||||||||+|++|+||++.++..||+|||||+++|.||..||.+|+|++..++|.|++..
T Consensus 402 GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~ 481 (1157)
T KOG0386|consen 402 GLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQ 481 (1157)
T ss_pred hhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-ccccceEEEecCCCCCCCHHH
Q 000101 1088 RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1088 Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lka~rRLLLTGTPIQNnL~E 1166 (2239)
|+.+..++..++|+|++|||+++++++..|.+++|.||||||+|||||..|+++..|. .|.+++||||||||+||++.|
T Consensus 482 R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpE 561 (1157)
T KOG0386|consen 482 RSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPE 561 (1157)
T ss_pred HhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHH
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEE
Q 000101 1167 LWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 1246 (2239)
Q Consensus 1167 LwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~V 1246 (2239)
||+|||||+|.||+++..|.+||+.||.+.| +..+++.++.+++|+|||++|+||+|||+|++|+++||+|++.+
T Consensus 562 LWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~v 636 (1157)
T KOG0386|consen 562 LWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDV 636 (1157)
T ss_pred HHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHh
Confidence 9999999999999999999999999999987 34568889999999999999999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC----CccccchhhH
Q 000101 1247 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP----YFSDLSKDFL 1322 (2239)
Q Consensus 1247 V~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p----~~~~~s~d~L 1322 (2239)
++|.||+.|+.+|.++.+.+.+.++. ....++++.|+|.+|+|||||||||+|.. +......+.+
T Consensus 637 iKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL 705 (1157)
T KOG0386|consen 637 IKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDL 705 (1157)
T ss_pred hheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHH
Confidence 99999999999999999988877665 12234678999999999999999999843 2333344789
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000101 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402 (2239)
Q Consensus 1323 i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS 1402 (2239)
++.||||++|++||++|+++|||||+||+||.++++|++||..++++|+||||+|+.++|..+++.||.|+++||+||+|
T Consensus 706 ~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 706 VRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhccc
Q 000101 1403 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 1482 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gk 1482 (2239)
|+|||+|||||+||||||||++|||++++||.+|+|||||+++|+|+++++|
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv---------------------------- 837 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV---------------------------- 837 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh----------------------------
Confidence 9999999999999999999999999999999999999999999999999884
Q ss_pred chhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhhhhcccccccCCCCHHHHHHHHhcChHHHH
Q 000101 1483 DRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 1562 (2239)
Q Consensus 1483 d~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ee~~~e~~~~vp~deELN~~laRseeE~~ 1562 (2239)
++|||.|++. +.+|++++++||++|+||+++++++|+++|+.|++.+++.++ .+++++++||+||||+++|++
T Consensus 838 ----~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~--~~v~~~~~ln~~larseeE~~ 910 (1157)
T KOG0386|consen 838 ----NSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEE--EEVPDDEVLNSMLARSEEEFE 910 (1157)
T ss_pred ----hHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCcccc--ccCCcHHHHHHHHhcchHHHH
Confidence 8999999984 689999999999999999999999999999999998766544 779999999999999999999
Q ss_pred HHhhhhhhcCcc-------hhhhhhccchHHHhhcHHHHHHHHhhhccCCcccccccCCcccCcchhhHhhhcCCCCCCC
Q 000101 1563 LFDQMDEEFGWI-------EEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKY 1635 (2239)
Q Consensus 1563 lf~~mD~e~~~~-------~~l~e~~elp~~~~~~~~e~~~~~~~~~k~~~k~~~~~~s~~~~~ke~~~err~~~~~kk~ 1635 (2239)
+|.+||.|+.|. .++++++++|+|+.....+.+.... . ++......++.+.||+
T Consensus 911 ~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~----~---------------~~~~~~~~rg~r~Rke 971 (1157)
T KOG0386|consen 911 LFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSE----E---------------EEEEKILGRGRRARKE 971 (1157)
T ss_pred HHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhh----h---------------hhhhccccccccccce
Confidence 999999998663 3789999999999776666543221 0 0001112456666677
Q ss_pred cccccccccccccccccccccCCC-c-ccccccccCCCccccccCCCCCCCCCCCCCcCCCCcccCCCccCcccccccch
Q 000101 1636 PNYKEVDDEIGEYSEASSDERNGY-P-VQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNN 1713 (2239)
Q Consensus 1636 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ge~~e~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 1713 (2239)
-.|..... ++.+-.+.|++.++. + +....|...-..|+........ ...+--| ..+.. ...
T Consensus 972 v~y~d~~t-e~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~-i~~ 1034 (1157)
T KOG0386|consen 972 VVYSDRLT-EMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLSQKKR------------KLRPRSP---KQALK-IAS 1034 (1157)
T ss_pred eecccccc-hhhhhhhccccccccchhhhhccCCCccccccccchhhcc------------cccCCCh---HHHHH-HHH
Confidence 77663322 222211111110000 0 0011122111111111100000 1111111 22222 222
Q ss_pred hhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C
Q 000101 1714 HVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S 1782 (2239)
Q Consensus 1714 ~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~ 1782 (2239)
.+.... +++||.+++.| ++||++.|||||.||++|+++.+ |...|+.+.|.++.++.+||.+ .
T Consensus 1035 ~~~~~~-----~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~e 1108 (1157)
T KOG0386|consen 1035 TSIKYK-----DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFNNARTYNEE 1108 (1157)
T ss_pred HHHhcc-----cccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcchhhhhccC
Confidence 333333 55899999999 99999999999999999999999 9999999999999999999998 8
Q ss_pred CCccccCCcccccccccccccccc
Q 000101 1783 GSWTHDRDEGEDEQVLQPKIKRKR 1806 (2239)
Q Consensus 1783 ~Sw~~~~~~~~d~~~~~~~~~rkr 1806 (2239)
|||++ +|+.+++.+..-++
T Consensus 1109 gs~~y-----~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1109 GSRVY-----EDAIVLQSVFKSAR 1127 (1157)
T ss_pred Cceec-----hhHHHHHHHHhhhH
Confidence 99999 99999995544433
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-107 Score=991.13 Aligned_cols=510 Identities=43% Similarity=0.721 Sum_probs=449.3
Q ss_pred hhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
....+|..+.+|+||+||++||+||+++|.|+.|||||||||||||+|+|+++.|+...++..||+|||||.+++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999998999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHHH-hhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~i-~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
||.+|+|++.+++|+|.+.+|..+...+ ..+.|+||||||++++++.+.|.++.|.|+||||||||||.+|++++.|+.
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 9999999999999999999998887764 445999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
|.+.+||||||||+||||.|||+|||||+|.+|++.+.|..||..... +.....+.+||.+|+||
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------------~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------------EGDQELVSRLHKVLRPF 379 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------------ccCHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999975311 11122688999999999
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
+|||+|.+|++.||+|.+.+++|.|+..|++.|..+.......+..... ..-..|+|++|+|||||||
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQLRKccnH 447 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQLRKCCNH 447 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999987654333222110 0235799999999999999
Q ss_pred CCCCCCC---ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1307 PLLNYPY---FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1307 P~L~~p~---~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
||||... ....+.+.++..|||+.+|+++|++|++.||||||||||+.++|||++||.+++|.|+||||+|+.++|.
T Consensus 448 PYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 448 PYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred ccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHH
Confidence 9998753 2244667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1463 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~ 1463 (2239)
..|+.||.+++.+|||||||+|||+||||++|||||+||+||||+.++||++|||||||+|+|.||+|++
T Consensus 528 ~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---------- 597 (971)
T KOG0385|consen 528 DAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---------- 597 (971)
T ss_pred HHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccC-ccCCHHHHHHHHHHHHhhhhcc-cccc
Q 000101 1464 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD-QRTTHEERRMTLETLLHDEERY-QETV 1541 (2239)
Q Consensus 1464 eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD-~kst~eErr~~Le~LL~~ee~~-~e~~ 1541 (2239)
-++||++|+++ +..|+.++..||+.|... .++.. .....+-.|++-+... .+..
T Consensus 598 ----------------------entVEe~IveR-A~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~ 653 (971)
T KOG0385|consen 598 ----------------------ENTVEEKIVER-AAAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESK 653 (971)
T ss_pred ----------------------cchHHHHHHHH-HHHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhc
Confidence 27999999997 467999999999999433 22322 2333455555543222 1112
Q ss_pred cCCCCHHHHHHHHhcChH
Q 000101 1542 HDVPSLQEVNRMIARSED 1559 (2239)
Q Consensus 1542 ~~vp~deELN~~laRsee 1559 (2239)
....++ +|..+|.|+++
T Consensus 654 es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEE 670 (971)
T ss_pred ccccch-hHHHHHHhhhh
Confidence 222333 88899888775
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-98 Score=945.39 Aligned_cols=508 Identities=40% Similarity=0.668 Sum_probs=441.1
Q ss_pred hhhhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 986 ~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
..++..||..+.+.+||+||++||+||+..|.++.|||||||||||||||+|++|.+|+.....+||||||||.+++.+|
T Consensus 356 ~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W 435 (1373)
T KOG0384|consen 356 FRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAW 435 (1373)
T ss_pred HHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHH
Confidence 34567899999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHCCCCceEEEecchhhHHHHHHH--Hhh-----cCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh
Q 000101 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQ--VAA-----LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 1138 (2239)
Q Consensus 1066 ~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~--i~~-----~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S 1138 (2239)
..||..|+ .+++++|+|+...|.-+... ... .+|+++||||+++++|...|..++|.++|||||||+||..|
T Consensus 436 ~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 436 EREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHH
Confidence 99999999 99999999998887655433 222 37999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000101 1139 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218 (2239)
Q Consensus 1139 KlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~R 1218 (2239)
+++..|..|...+|||+||||+||++.|||+|||||+|+-|.++..|...|.. .....+..
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~~~~~ 575 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEEQVRK 575 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHHHHHH
Confidence 99999999999999999999999999999999999999999999999987621 12235789
Q ss_pred HHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000101 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1298 (2239)
Q Consensus 1219 LhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niIm 1298 (2239)
||.+|+||||||+|+||++.||+|.+.++.|+||..|+.+|++|+......+. +... ....+|+|++|
T Consensus 576 L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt---------KG~~---g~~~~lLNimm 643 (1373)
T KOG0384|consen 576 LQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALT---------KGAK---GSTPSLLNIMM 643 (1373)
T ss_pred HHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh---------ccCC---CCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999876432221 1110 11257999999
Q ss_pred HHHHHcCCCCCCCCCcccc-----------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1299 ELRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1299 qLRKiCnHP~L~~p~~~~~-----------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
.|+||||||||+.+..+.+ ....++..|||+.+|++||.+|++.||||||||||+.++|||++||..++
T Consensus 644 ELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ 723 (1373)
T KOG0384|consen 644 ELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG 723 (1373)
T ss_pred HHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC
Confidence 9999999999987653322 23457899999999999999999999999999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1368 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1368 iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
|+|.||||++..+-|+.+|+.||+++++-|||||||+|||+||||.+||||||||+||||++++||+.|||||||++.|.
T Consensus 724 ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~Vn 803 (1373)
T KOG0384|consen 724 YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVN 803 (1373)
T ss_pred CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCH--HHHHH
Q 000101 1448 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--EERRM 1525 (2239)
Q Consensus 1448 VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~--eErr~ 1525 (2239)
||||++ .+|||+-|+++ +..|+.++..||+.+.++...+. .-...
T Consensus 804 VYRLVT--------------------------------k~TvEeEilER-Ak~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ 850 (1373)
T KOG0384|consen 804 VYRLVT--------------------------------KNTVEEEILER-AKLKMVLDHAVIQRMDTKGKTSKSNPFSKE 850 (1373)
T ss_pred EEEEec--------------------------------CCchHHHHHHH-HHHHhhhHHHHHHhhccccccCCCCCCCHH
Confidence 999987 48999999996 58899999999998876332221 12234
Q ss_pred HHHHHHhhhhc--ccc--cccCCCCHHHHHHHHhcCh
Q 000101 1526 TLETLLHDEER--YQE--TVHDVPSLQEVNRMIARSE 1558 (2239)
Q Consensus 1526 ~Le~LL~~ee~--~~e--~~~~vp~deELN~~laRse 1558 (2239)
.|.+||+-+.. +.+ .....+...+|.+||.|.+
T Consensus 851 ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 851 ELSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred HHHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 56666663211 111 1122333455677776643
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-93 Score=853.18 Aligned_cols=463 Identities=40% Similarity=0.736 Sum_probs=415.1
Q ss_pred hhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
.-..||.+|. ++|++||++||+||+.+|..+.|||||||||||||+|+|+++++|.+.+..+||||||+|.++|.||..
T Consensus 556 ~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 3457999996 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHH-------HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHH
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQ-------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1140 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~-------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKl 1140 (2239)
||.+|+|.++++.|.|+..+|+.+... .+...|+|+||||+.+..|...|.+++|.|+|+|||+.||...|.+
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~R 714 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSR 714 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhH
Confidence 999999999999999999999876543 2446899999999999999999999999999999999999999999
Q ss_pred HHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1141 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1141 skaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
|+.|..|+|..|||||||||||+..|||+||+|++|.+|++..+|.+||.+.+....... .......+.|||
T Consensus 715 WKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~--------~tlneqqL~RLH 786 (1185)
T KOG0388|consen 715 WKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMN--------TTLNEQQLQRLH 786 (1185)
T ss_pred HHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhc--------CCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876542211 111223578999
Q ss_pred HhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
.+|+||||||.|++|..+|..|+++.++|.||..|..+|+.|..... ...+.+++|+|
T Consensus 787 ~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~~~vmQl 844 (1185)
T KOG0388|consen 787 AILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEMENLVMQL 844 (1185)
T ss_pred HHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865321 12334589999
Q ss_pred HHHcCCCCCCCCC-------------------------------------------------------------------
Q 000101 1301 RKTCNHPLLNYPY------------------------------------------------------------------- 1313 (2239)
Q Consensus 1301 RKiCnHP~L~~p~------------------------------------------------------------------- 1313 (2239)
|++||||-||...
T Consensus 845 rKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w 924 (1185)
T KOG0388|consen 845 RKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAW 924 (1185)
T ss_pred HHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchh
Confidence 9999999663100
Q ss_pred c---------ccc-------------------------------------------------------------------
Q 000101 1314 F---------SDL------------------------------------------------------------------- 1317 (2239)
Q Consensus 1314 ~---------~~~------------------------------------------------------------------- 1317 (2239)
+ ..+
T Consensus 925 ~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~ 1004 (1185)
T KOG0388|consen 925 YLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDL 1004 (1185)
T ss_pred cccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCc
Confidence 0 000
Q ss_pred --------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1318 --------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1318 --------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
..+..+..|||+..|+.+|++|++.|||||+|+||+.|+|+|++||..++|.|+||||+.+..+|.
T Consensus 1005 E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRr 1084 (1185)
T KOG0388|consen 1005 ENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRR 1084 (1185)
T ss_pred cccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHH
Confidence 001125568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1463 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~ 1463 (2239)
.++.+|+. +++|||||||+|||+||||++||||||||++|||+.+.||++||||+||+++|+||+|++
T Consensus 1085 d~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~---------- 1152 (1185)
T KOG0388|consen 1085 DVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT---------- 1152 (1185)
T ss_pred HHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc----------
Confidence 99999996 899999999999999999999999999999999999999999999999999999999965
Q ss_pred hhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCc
Q 000101 1464 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1516 (2239)
Q Consensus 1464 eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~ 1516 (2239)
.++|||+|+++ +..|..+...|+.+++|..
T Consensus 1153 ----------------------rgTvEEk~l~r-A~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1153 ----------------------RGTVEEKVLER-ANQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred ----------------------cccHHHHHHHH-hhhHHHHHHHHHcCCcccC
Confidence 37999999996 4678899999999988853
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-92 Score=873.18 Aligned_cols=485 Identities=41% Similarity=0.729 Sum_probs=427.6
Q ss_pred ccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000101 990 MRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 990 ~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
+..|++|. |.||+||..||+||+.+|++++|||||||||||||||+|+|+++|...+++|||+|||||++++.||..||
T Consensus 606 tpvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMEl 684 (1958)
T KOG0391|consen 606 TPVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMEL 684 (1958)
T ss_pred cCchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHH
Confidence 35577775 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCceEEEecchhhHHHHHHH-HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc
Q 000101 1070 HKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR 1148 (2239)
Q Consensus 1070 ~KwaPslkvvvy~Gskd~Rk~l~~~-i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk 1148 (2239)
++|||+++++.|+|+..+|+..... .....|+|+||+|..+..|...|...+|.|+||||||+|||+.+.+|++|..|+
T Consensus 685 KRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfn 764 (1958)
T KOG0391|consen 685 KRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFN 764 (1958)
T ss_pred hhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccc
Confidence 9999999999999999998776543 445679999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1149 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
+++||||||||++|++.|||+|++||+|.+|.+.+.|..||..|+....... .+.....+.|||++|+||+|
T Consensus 765 sqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiL 836 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFIL 836 (1958)
T ss_pred hhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999986542111 11223468899999999999
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
||+|.||+++||.|.+++|+|.||..|+.||+.+..... .+..+. .+.+-++.|++|+||||||||.
T Consensus 837 RRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqLrKvCNHPn 903 (1958)
T KOG0391|consen 837 RRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQLRKVCNHPN 903 (1958)
T ss_pred HHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999997754321 111111 2346688999999999999996
Q ss_pred CCCCCc--------------------------------------------------------------------------
Q 000101 1309 LNYPYF-------------------------------------------------------------------------- 1314 (2239)
Q Consensus 1309 L~~p~~-------------------------------------------------------------------------- 1314 (2239)
||.+..
T Consensus 904 LfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~ 983 (1958)
T KOG0391|consen 904 LFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPI 983 (1958)
T ss_pred cCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCC
Confidence 621000
Q ss_pred --------------------cc----------------------------------------------------------
Q 000101 1315 --------------------SD---------------------------------------------------------- 1316 (2239)
Q Consensus 1315 --------------------~~---------------------------------------------------------- 1316 (2239)
..
T Consensus 984 pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~ 1063 (1958)
T KOG0391|consen 984 PTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIV 1063 (1958)
T ss_pred ccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeec
Confidence 00
Q ss_pred -----------------c--------------------------------------------------------------
Q 000101 1317 -----------------L-------------------------------------------------------------- 1317 (2239)
Q Consensus 1317 -----------------~-------------------------------------------------------------- 1317 (2239)
+
T Consensus 1064 sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~ 1143 (1958)
T KOG0391|consen 1064 SVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIY 1143 (1958)
T ss_pred cccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHh
Confidence 0
Q ss_pred --c-----hh----------------------------------------------------------------------
Q 000101 1318 --S-----KD---------------------------------------------------------------------- 1320 (2239)
Q Consensus 1318 --s-----~d---------------------------------------------------------------------- 1320 (2239)
. .+
T Consensus 1144 ~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~ 1223 (1958)
T KOG0391|consen 1144 LVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRI 1223 (1958)
T ss_pred hccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHH
Confidence 0 00
Q ss_pred ------------------------------hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeE
Q 000101 1321 ------------------------------FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1370 (2239)
Q Consensus 1321 ------------------------------~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky 1370 (2239)
.+--+|||+..|.-+|..|+..|||||||+||+.|+|+|+.+|..+||.|
T Consensus 1224 ~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY 1303 (1958)
T KOG0391|consen 1224 LRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLY 1303 (1958)
T ss_pred HHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEE
Confidence 00113699999999999999999999999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1371 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1371 ~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+||||.|+.++|+.++++||. |..+|||||||+.||+||||+.||||||||.||||.++.||++|+|||||+++|+|||
T Consensus 1304 ~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYR 1382 (1958)
T KOG0391|consen 1304 VRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 1382 (1958)
T ss_pred EEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEE
Confidence 999999999999999999997 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHH
Q 000101 1451 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETL 1530 (2239)
Q Consensus 1451 LvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~L 1530 (2239)
|++ -.+||+.|+++. +.|.-+++.+|+.|.| +++.-....+.+|
T Consensus 1383 LIS--------------------------------e~TIEeniLkka-nqKr~L~evaiqggdf---Tt~ff~q~ti~dL 1426 (1958)
T KOG0391|consen 1383 LIS--------------------------------ERTIEENILKKA-NQKRMLDEVAIQGGDF---TTAFFKQRTIRDL 1426 (1958)
T ss_pred eec--------------------------------cchHHHHHHhhh-hHHHHHHHHhhccCCc---cHHHHhhhhHHHH
Confidence 976 168999999864 5688899999999999 7777777788888
Q ss_pred Hhh
Q 000101 1531 LHD 1533 (2239)
Q Consensus 1531 L~~ 1533 (2239)
|.-
T Consensus 1427 Fd~ 1429 (1958)
T KOG0391|consen 1427 FDV 1429 (1958)
T ss_pred hcC
Confidence 874
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-88 Score=828.15 Aligned_cols=487 Identities=41% Similarity=0.660 Sum_probs=415.3
Q ss_pred hccCCcccc-CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 989 VMRQPSMLR-AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 989 v~~qPs~L~-ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
+..||..|. +.+|++||+.||+||.-+|.++++||||||||||||||+|++++||.+ .+..||+|||||.+++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 456888886 459999999999999999999999999999999999999999999997 677999999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHHHhhc--CccEEEEehhHHH---HhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL--KFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~--kfdVVITTYE~L~---kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
||.+|||.+++..|+|+..+|+++...+... .|+|+||||..+. .|+.+|...+|+|+|+||||.+||..|.+++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 9999999999999999999999998876655 8999999999985 4688999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCCh-HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~-k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
.|..+++.+||||||||+||+|.|||+||.|++|.+|.+. .++...|..--... ...+...+ ....|.|-..
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l----~qerIsrAK~ 618 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALL----SQERISRAKT 618 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHH----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 56766665321111 11111111 1225788999
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
++.||+|||+|.+|+++||+|..++.+|+|+..|+.+|..+........ ....++. . ..+ -+.+|+||
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~------~~~~~ns----~-~~~-~~vlmqlR 686 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL------NEVSKNS----E-LKS-GNVLMQLR 686 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc------ccccccc----c-ccc-chHHHHHH
Confidence 9999999999999999999999999999999999999998765431100 0111110 0 011 46899999
Q ss_pred HHcCCCCCCCCCccc-------------------------------------------------cchhhHhhcccHHHHH
Q 000101 1302 KTCNHPLLNYPYFSD-------------------------------------------------LSKDFLVKSCGKLWIL 1332 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~-------------------------------------------------~s~d~Li~~SGKLelL 1332 (2239)
|++|||+|+...+.+ .-.+..|-.|||+..|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 999999996432211 0123356789999999
Q ss_pred HHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCC
Q 000101 1333 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1412 (2239)
Q Consensus 1333 drIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNL 1412 (2239)
..||++++..|+|||||||||.++|||+.+|..+++.|+||||+|...+|+.+|++||. +.++|||||||+|||.||||
T Consensus 767 ~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 767 KELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred HHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999997 77899999999999999999
Q ss_pred CcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHH
Q 000101 1413 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1492 (2239)
Q Consensus 1413 qaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~ 1492 (2239)
+.||+||+||.++||..+.||.+||||+||+|+|+||+|++ .++|||.
T Consensus 846 t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k~TIEE~ 893 (941)
T KOG0389|consen 846 TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------KSTIEEG 893 (941)
T ss_pred cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------cCcHHHH
Confidence 99999999999999999999999999999999999999987 4899999
Q ss_pred HHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhh
Q 000101 1493 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1533 (2239)
Q Consensus 1493 Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ 1533 (2239)
|++ +++.|+.++..+...++-. ..+....+..||+.
T Consensus 894 I~~-lA~~KL~Le~~lt~~~k~~----~~e~~~~v~~lL~~ 929 (941)
T KOG0389|consen 894 ILR-LAKTKLALEADLTEDGKGV----EDEGEKTVGKLLET 929 (941)
T ss_pred HHH-HHHHhhhhhhhhccCccch----hhhhhhHHHHHHHH
Confidence 997 7889999988888765432 22333345555553
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-86 Score=869.36 Aligned_cols=509 Identities=40% Similarity=0.715 Sum_probs=443.2
Q ss_pred hccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
+..+|..+. ++|||||++||+||+.++.++.|||||||||||||+|+|+++.++....+..+|+|||||.+++.||..|
T Consensus 159 l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 159 LLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred eccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 456898887 6999999999999999999999999999999999999999999998877888999999999999999999
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHH-HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQ-VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY 1147 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~-i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L 1147 (2239)
|.+|+|.+.+++|+|....|...... +....|+||||||+++.++...|.++.|++|||||||+|||..+++++++..+
T Consensus 238 i~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L 317 (1033)
T PLN03142 238 IRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF 317 (1033)
T ss_pred HHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHh
Confidence 99999999999999998887665433 34567999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... ....++.+||.+|+||+
T Consensus 318 ~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~~~L~pf~ 382 (1033)
T PLN03142 318 STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLHKVLRPFL 382 (1033)
T ss_pred hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999752110 11235778999999999
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
|||+|.+|...||++.+.+++|.||+.|+.+|..+.......+. .. .....+++++++||+||+||
T Consensus 383 LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~g-----~~~~~LlnilmqLRk~cnHP 448 (1033)
T PLN03142 383 LRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------AG-----GERKRLLNIAMQLRKCCNHP 448 (1033)
T ss_pred hhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------cc-----ccHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999988654211110 00 12346788999999999999
Q ss_pred CCCCCCc---cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1308 LLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1308 ~L~~p~~---~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
+++.... .......++..|+|+.+|+++|..+...|+||||||+|+.++++|+++|..+|+.|++|||+++.++|..
T Consensus 449 ~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~ 528 (1033)
T PLN03142 449 YLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDA 528 (1033)
T ss_pred HhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 9975322 2234566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhh
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1464 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~e 1464 (2239)
+|+.||.+++..+||||||+|||+||||+.||+||+||+||||+.++||+||+|||||+++|.||+|++
T Consensus 529 ~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt----------- 597 (1033)
T PLN03142 529 SIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT----------- 597 (1033)
T ss_pred HHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe-----------
Confidence 999999888888999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhhhhcc-cccccC
Q 000101 1465 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY-QETVHD 1543 (2239)
Q Consensus 1465 Ke~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ee~~-~e~~~~ 1543 (2239)
.+|||+.|+++ +..|+.++..|++.|.+..... .....|..|++-.... -.....
T Consensus 598 ---------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~~f~~~~~ 653 (1033)
T PLN03142 598 ---------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEMVFSSKDS 653 (1033)
T ss_pred ---------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHHhhhccCC
Confidence 38999999985 6789999999999998754321 1123455666532221 112234
Q ss_pred CCCHHHHHHHHhcChHHHH
Q 000101 1544 VPSLQEVNRMIARSEDEVE 1562 (2239)
Q Consensus 1544 vp~deELN~~laRseeE~~ 1562 (2239)
.+++++|+.+|+|+++...
T Consensus 654 ~~~~~did~il~~~~~~~~ 672 (1033)
T PLN03142 654 TITDEDIDRIIAKGEEATA 672 (1033)
T ss_pred CCCHHHHHHHHHhcHHHHH
Confidence 6789999999999987553
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-83 Score=789.05 Aligned_cols=467 Identities=34% Similarity=0.598 Sum_probs=404.4
Q ss_pred cCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
..|..+.. .|++||.+||+||+.+|.++.||||+||||||||||+|+|++.|.......+|+|||||.+++.||..||.
T Consensus 197 ~vPg~I~~-~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIWS-KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHHH-HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 45655543 89999999999999999999999999999999999999999999976567799999999999999999999
Q ss_pred HHCCCCceEEEecchhh-H----------HHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhH
Q 000101 1071 KWLPSVSCIYYVGAKDQ-R----------SRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1139 (2239)
Q Consensus 1071 KwaPslkvvvy~Gskd~-R----------k~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SK 1139 (2239)
+|+|.+.+.+|+|+... | ..++........+|+||||+.+......+..+.|+|||+||+|+|+|++++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999998662 1 111111233456799999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000101 1140 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1219 (2239)
Q Consensus 1140 lskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RL 1219 (2239)
++.+++.+++.+|++||||||||+|.|||+||+|+.|+.+++...|.+.|..|+..++......... .......-.|
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv---~~aykca~~L 432 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV---QTAYKCAVAL 432 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765544322 2233345679
Q ss_pred HHhhhhHHhhHhHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000101 1220 HQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1298 (2239)
Q Consensus 1220 hklLrPFmLRRlKkDVek-dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niIm 1298 (2239)
+.+|.||+|||+|.||.. .||.|.++|++|.||+.|+.+|..+.+...+ ..+... -..++.-+.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v--------~~i~ng-------~~~~l~Gi~ 497 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV--------NKILNG-------KRNCLSGID 497 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHH--------HHHHcC-------CccceechH
Confidence 999999999999999999 9999999999999999999999988654211 000000 112233467
Q ss_pred HHHHHcCCCCCCCCC--ccccchh--hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH-HcCCeEEee
Q 000101 1299 ELRKTCNHPLLNYPY--FSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ-WRQLVYRRI 1373 (2239)
Q Consensus 1299 qLRKiCnHP~L~~p~--~~~~s~d--~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~-~rGiky~RL 1373 (2239)
-||++||||.++... ...-..+ ..+..|||+.+|..+|..+...|+|||+|+|...|+|+|+.+|. ..||.|+|+
T Consensus 498 iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred HHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 799999999997653 2111222 46889999999999999999999999999999999999999999 799999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1374 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1374 DGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
||.|+...|..+|++||+ +..++||||+|+|||+||||+.||.||||||+|||..+.||..|||||||+|+|.||||++
T Consensus 578 DGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 999999999999999997 5678999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHh
Q 000101 1454 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 1510 (2239)
Q Consensus 1454 VEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIq 1510 (2239)
.++|||.|+.+ +-+|..+.+.++.
T Consensus 657 --------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~ 680 (923)
T KOG0387|consen 657 --------------------------------AGTIEEKIYHR-QIFKQFLTNRILK 680 (923)
T ss_pred --------------------------------CCcHHHHHHHH-HHHHHHHHHHHhc
Confidence 37888888864 6688888888874
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=787.48 Aligned_cols=494 Identities=33% Similarity=0.555 Sum_probs=425.4
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEechHHHHHH
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k------~~~GP~LIVVP~SLLsQW 1065 (2239)
.|.-+. .+||.||.+||+|+..++..+++|||||+||||||+|+|++++.-...+ -...|.|||||.+|..+|
T Consensus 968 Ip~pI~-a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW 1046 (1549)
T KOG0392|consen 968 IPVPIS-AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHW 1046 (1549)
T ss_pred cccchh-HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHH
Confidence 344443 3899999999999999999999999999999999999999987654332 134589999999999999
Q ss_pred HHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1066 ~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
+.|+.+|+|.++++.|.|.+..|..+..+.. +.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++++
T Consensus 1047 ~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~--~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavk 1124 (1549)
T KOG0392|consen 1047 KSEVKKFFPFLKVLQYVGPPAERRELRDQYK--NANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVK 1124 (1549)
T ss_pred HHHHHHhcchhhhhhhcCChHHHHHHHhhcc--ccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHH
Confidence 9999999999999999999999988876544 67999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
.+++.+||+|||||+||++.|||+||+||+|+++|+.+.|.+.|.+|+........ ...+.+...+.+..||+.+-|
T Consensus 1125 qL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~---Sske~EaG~lAleaLHKqVLP 1201 (1549)
T KOG0392|consen 1125 QLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKS---SSKEQEAGVLALEALHKQVLP 1201 (1549)
T ss_pred HHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCccc---chhHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986543322 235567788899999999999
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
|+|||+|.||+++||||+...++|+|++.|+++|+.+.......+............. ....++..+..|||.||
T Consensus 1202 F~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-----~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1202 FLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-----DKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-----chHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998776333222221111111110 14567788899999999
Q ss_pred CCCCCCCCcc----cc------chhhH--hhcccHHHHHHHHHHHHH--------------hcCCeEEEEEccHHHHHHH
Q 000101 1306 HPLLNYPYFS----DL------SKDFL--VKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKLLDIL 1359 (2239)
Q Consensus 1306 HP~L~~p~~~----~~------s~d~L--i~~SGKLelLdrIL~kLk--------------atGhKVLIFSQ~t~~LDIL 1359 (2239)
||.+...... .. ....+ +..++|+.+|..||.++- ..+||||||||+..++|++
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 9999754311 10 01122 567899999999999872 2579999999999999999
Q ss_pred HHHHHHc---CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhh
Q 000101 1360 EEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 1436 (2239)
Q Consensus 1360 ed~L~~r---Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGR 1436 (2239)
++-|-.. .+.|.||||++++.+|.+++++||+ |..+.|+|++|.+||+||||+.||||||++-||||..++||+||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDR 1435 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDR 1435 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHH
Confidence 9888654 5679999999999999999999997 77889999999999999999999999999999999999999999
Q ss_pred hcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCc
Q 000101 1437 AHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1516 (2239)
Q Consensus 1437 AhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~ 1516 (2239)
|||||||+.|.||||++ .|++||+|.. ++++|.++++.||++..-+.
T Consensus 1436 AHRIGQKrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqqNasl 1482 (1549)
T KOG0392|consen 1436 AHRIGQKRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQNASL 1482 (1549)
T ss_pred HHhhcCceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcccccc
Confidence 99999999999999976 3899999997 89999999999999988777
Q ss_pred cCCHHHHHHHHHHH
Q 000101 1517 RTTHEERRMTLETL 1530 (2239)
Q Consensus 1517 kst~eErr~~Le~L 1530 (2239)
.+.+.+....|..-
T Consensus 1483 ~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1483 ETMDTDQLLDLFTV 1496 (1549)
T ss_pred cccCHHHHHHHhcc
Confidence 77777766655553
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=640.74 Aligned_cols=461 Identities=30% Similarity=0.447 Sum_probs=377.5
Q ss_pred CCChHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC----CCeEEEechHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY----GPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~----GP~LIVVP~SLLsQW~~E 1068 (2239)
..|||||.+|+.||..... +..|||+||+||+|||+++|+||..++...+.+ ...|||||.+|+.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 4899999999999997653 456789999999999999999999999876653 356999999999999999
Q ss_pred HHHHCC--CCceEEEecchhhH-HHH---H-HHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHH
Q 000101 1069 LHKWLP--SVSCIYYVGAKDQR-SRL---F-SQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1069 f~KwaP--slkvvvy~Gskd~R-k~l---~-~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKls 1141 (2239)
|.+|.. .+..+.+.|..... ... . ........-|+|.+|+.+..+...+....+++||+||+|++||..+.++
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~ 396 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTL 396 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHH
Confidence 999986 56676666665541 110 0 0112234568999999999998899999999999999999999999999
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
++|..+.+++|++|||||+||++.|+|++|+|++|+++++...|...|..|+...+.....+.+... ..-+..|..
T Consensus 397 kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~----~~rl~eL~~ 472 (776)
T KOG0390|consen 397 KALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER----EERLQELRE 472 (776)
T ss_pred HHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876554433322221 223888999
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
++..|++||+-..+.+.||.+.+++|.|.+++.|..+|+.+.... .. .. .....+..+..|+
T Consensus 473 ~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l~~~~~L~ 534 (776)
T KOG0390|consen 473 LTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYALELITKLK 534 (776)
T ss_pred HHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchhhHHHHHH
Confidence 999999999999999999999999999999999999999887642 10 00 0011345678899
Q ss_pred HHcCCCCCCC-CCcc-----ccch------------hhHhhcccHHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHH
Q 000101 1302 KTCNHPLLNY-PYFS-----DLSK------------DFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEY 1362 (2239)
Q Consensus 1302 KiCnHP~L~~-p~~~-----~~s~------------d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~ 1362 (2239)
++||||.|.. .... .... ..-...++|+..|+.+|..+++. -.++++.++++.++++++..
T Consensus 535 k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~ 614 (776)
T KOG0390|consen 535 KLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQL 614 (776)
T ss_pred HHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHH
Confidence 9999999863 1100 0000 01123478999999998665433 34666667899999999999
Q ss_pred HHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1363 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1363 L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
++++|+.+++|||+|+..+|+.+|+.||++.+..||||+|++|||+||||..|++||+||++|||+.+.||++||||.||
T Consensus 615 ~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 615 CRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred HhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCC
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcccc
Q 000101 1443 KREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 1514 (2239)
Q Consensus 1443 kKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkF 1514 (2239)
+|.|+||+|++ .++|||.|+.+ +..|..+-..|++...-
T Consensus 695 Kk~v~iYrLla--------------------------------tGtiEEk~~qr-q~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 695 KKPVYIYRLLA--------------------------------TGTIEEKIYQR-QTHKEGLSSMVFDEEED 733 (776)
T ss_pred cceEEEEEeec--------------------------------CCCchHHHHHH-HHHhhhhhheEEecccc
Confidence 99999999977 26677777763 45565555555554433
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=608.20 Aligned_cols=553 Identities=25% Similarity=0.376 Sum_probs=412.1
Q ss_pred hhhhccCCccccCCCChHHHHHHHHHHHHhhc---------CCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEE
Q 000101 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYN---------NKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLI 1055 (2239)
Q Consensus 986 ~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~---------n~lnGILADEMGLGKTIQAIALIa~Li-e~k~~~GP~LI 1055 (2239)
.+.....|..|.. +|+|||..||+||+.... .+.|||||+-||||||+|+|+|+..++ ..+-....+||
T Consensus 655 ~e~~VqV~rslv~-kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLv 733 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVI-KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALV 733 (1567)
T ss_pred ccchhhccHhHHh-hcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEE
Confidence 3455566766664 899999999999997653 578899999999999999999987654 34566778999
Q ss_pred EechHHHHHHHHHHHHHCCCCce----EEE----ecchhhHHHHHHHHhhcCccEEEEehhHHHHh--------------
Q 000101 1056 IVPNAVLVNWKSELHKWLPSVSC----IYY----VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD-------------- 1113 (2239)
Q Consensus 1056 VVP~SLLsQW~~Ef~KwaPslkv----vvy----~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD-------------- 1113 (2239)
|||.+++.||.+||.+|.+++.. -+| +..+..|...+..+... -.|+|.-|++++..
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~-ggVmIiGYdmyRnLa~gr~vk~rk~ke~ 812 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQED-GGVMIIGYDMYRNLAQGRNVKSRKLKEI 812 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhc-CCEEEEehHHHHHHhcccchhhhHHHHH
Confidence 99999999999999999986322 122 22334454444444433 38999999998653
Q ss_pred -hhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCC
Q 000101 1114 -RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQP 1192 (2239)
Q Consensus 1114 -~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kP 1192 (2239)
...|..-..++|||||||.|||..+.+++++..+++.+||+|||||+||||.|++++++|+.|+++++..+|...|..|
T Consensus 813 f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNp 892 (1567)
T KOG1015|consen 813 FNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNP 892 (1567)
T ss_pred HHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCc
Confidence 1234445789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCc
Q 000101 1193 FQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1272 (2239)
Q Consensus 1193 f~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~ 1272 (2239)
+.++...+....+...... ..+.|+.+|.-|+-|+--..+.+.||||.++||.+.||+.|..||..+..+..-. ..
T Consensus 893 I~nGq~~dST~~DVr~Mk~---RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G~ 968 (1567)
T KOG1015|consen 893 IQNGQCADSTMVDVRVMKK---RSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-GN 968 (1567)
T ss_pred cccCccCCCcHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-CC
Confidence 9998777665543322222 3466899999999999888899999999999999999999999999988743211 11
Q ss_pred hhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC------------------CCc---c----------------
Q 000101 1273 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY------------------PYF---S---------------- 1315 (2239)
Q Consensus 1273 ~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~------------------p~~---~---------------- 1315 (2239)
..+. ..+.-+.|+....-|++|++||+... .++ .
T Consensus 969 d~eg---------~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ 1039 (1567)
T KOG1015|consen 969 DSEG---------GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKK 1039 (1567)
T ss_pred cccc---------ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcc
Confidence 1111 01123567777888999999998610 000 0
Q ss_pred --------cc------------------------------------c-------------------------------hh
Q 000101 1316 --------DL------------------------------------S-------------------------------KD 1320 (2239)
Q Consensus 1316 --------~~------------------------------------s-------------------------------~d 1320 (2239)
+. . ..
T Consensus 1040 ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~ 1119 (1567)
T KOG1015|consen 1040 KSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADA 1119 (1567)
T ss_pred cccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhh
Confidence 00 0 00
Q ss_pred hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----------------------cCCeEEeecCCCC
Q 000101 1321 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTTS 1378 (2239)
Q Consensus 1321 ~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----------------------rGiky~RLDGsts 1378 (2239)
..+..|||+.+|.+||..+.+-|.|+|||+|....+|+|+.||.. +|..|.||||++.
T Consensus 1120 ~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1120 EVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred hhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 123468999999999999999999999999999999999999962 3667999999999
Q ss_pred HHHHHHHHHHHhcC-CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhh
Q 000101 1379 LEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1379 ~eeRqeiL~~FNs~-ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEk 1457 (2239)
...|.++.+.||++ +-..++|||||+||++||||-+|+.|||||..|||.-+.|+|-|++|.||+|+|+||||++
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA---- 1275 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA---- 1275 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh----
Confidence 99999999999986 4567899999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHh--hhh
Q 000101 1458 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLH--DEE 1535 (2239)
Q Consensus 1458 I~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~--~ee 1535 (2239)
.+++|++|+++ +-.|..+.--|++.......-+.+ ....|+..-- ++.
T Consensus 1276 ----------------------------qGTmEeKIYkR-QVTKqsls~RVVDeqQv~Rhy~~n-eLteLy~fep~~ddp 1325 (1567)
T KOG1015|consen 1276 ----------------------------QGTMEEKIYKR-QVTKQSLSFRVVDEQQVERHYTMN-ELTELYTFEPDLDDP 1325 (1567)
T ss_pred ----------------------------cccHHHHHHHH-HHhHhhhhhhhhhHHHHHHHhhHh-hhHHHhhcCCccCCc
Confidence 26677777663 455555555555432211111111 1111222110 111
Q ss_pred cccccccCCCCHHHHHHHHhcChHHHHHHhhhhhh--c--CcchhhhhhccchHHHhh
Q 000101 1536 RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE--F--GWIEEMTRYDQVPKWLRA 1589 (2239)
Q Consensus 1536 ~~~e~~~~vp~deELN~~laRseeE~~lf~~mD~e--~--~~~~~l~e~~elp~~~~~ 1589 (2239)
.-+......|.+-.+-+++.-..+ .++.+...+ . .-.++++++++-+.|..+
T Consensus 1326 ~sEr~~~~lpKdrllae~l~~~q~--~i~~y~ehdSll~~~e~eelteee~k~aWaey 1381 (1567)
T KOG1015|consen 1326 NSERDTPMLPKDRLLAELLQIHQE--HIVGYHEHDSLLDHKEEEELTEEERKAAWAEY 1381 (1567)
T ss_pred ccccccccCCchhHHHHHHHHHHH--HhhhhhhhhhhhcchhHHHHHHHhhhhhhhhH
Confidence 111123345666666666544433 233333222 1 123467777888888643
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=646.07 Aligned_cols=470 Identities=40% Similarity=0.634 Sum_probs=401.7
Q ss_pred ccCCCChHHHHHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHC
Q 000101 996 LRAGTLRDYQIVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWL 1073 (2239)
Q Consensus 996 L~ggtLRPYQleGLqwLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~-~GP~LIVVP~SLLsQW~~Ef~Kwa 1073 (2239)
...++|++||++|++|+. .++....+|||||+||+|||+|+|+++.++++.... .+|+|||||.+++.||..||.+|+
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334689999999999999 899999999999999999999999999987665554 689999999999999999999999
Q ss_pred CCCc-eEEEecchhh----HHHHHHHHhhc---CccEEEEehhHHHH---hhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVS-CIYYVGAKDQ----RSRLFSQVAAL---KFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslk-vvvy~Gskd~----Rk~l~~~i~~~---kfdVVITTYE~L~k---D~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
|.+. ++.++|.... +..+....... .|+|++|||+.+.. +...+..+.|+++|+||||++||..+..++
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~ 493 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGK 493 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHH
Confidence 9999 9999998753 33333323222 38999999999999 999999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHh-hhcCcccC-ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLn-FLlP~iF~-s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++........ .+.....+.+|+
T Consensus 494 ~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 566 (866)
T COG0553 494 ALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-------LEARELGIELLR 566 (866)
T ss_pred HHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-------hhhHHHHHHHHH
Confidence 999999999999999999999999999999 99999999 558999999999876543221 122233456699
Q ss_pred HhhhhHHhhHhHhh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHhc---CcccCchhHHhhhhcChhhHHH--HHHHH
Q 000101 1221 QILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG---TLRVDPEDEKRRVQKNPIYQAK--VYKTL 1293 (2239)
Q Consensus 1221 klLrPFmLRRlKkD--VekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~---~l~l~~~~ek~~l~k~~~~~~k--~~ksL 1293 (2239)
.++.||+|||.|.+ +...||++.+.+++|.|+..|..+|..+.... ...+....... ... ... ....+
T Consensus 567 ~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 641 (866)
T COG0553 567 KLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKAD---SDE--NRIGDSELNI 641 (866)
T ss_pred HHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccc--ccccchhhHH
Confidence 99999999999999 89999999999999999999999999876622 11100000000 000 000 24567
Q ss_pred HHHHHHHHHHcCCCCCCCCC-cc---------------ccchhhHhhcc-cHHHHHHHHH-HHHHhcCC--eEEEEEccH
Q 000101 1294 NNRCMELRKTCNHPLLNYPY-FS---------------DLSKDFLVKSC-GKLWILDRIL-IKLQRTGH--RVLLFSTMT 1353 (2239)
Q Consensus 1294 ~niImqLRKiCnHP~L~~p~-~~---------------~~s~d~Li~~S-GKLelLdrIL-~kLkatGh--KVLIFSQ~t 1353 (2239)
.+.++.||++|+||.++... .. ......++..| +|+..++++| ..+...++ |||||++|+
T Consensus 642 l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t 721 (866)
T COG0553 642 LALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFT 721 (866)
T ss_pred HHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcH
Confidence 88999999999999998765 11 11223456778 9999999999 89999999 999999999
Q ss_pred HHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHh
Q 000101 1354 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1433 (2239)
Q Consensus 1354 ~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQA 1433 (2239)
.++++|+.+|...++.|+++||+++...|..++++|+++ ..++|||+|++|||.||||+.|++||+||+||||..+.||
T Consensus 722 ~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa 800 (866)
T COG0553 722 PVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQA 800 (866)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHH
Confidence 999999999999999999999999999999999999985 6789999999999999999999999999999999999999
Q ss_pred hhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhc
Q 000101 1434 VARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1511 (2239)
Q Consensus 1434 iGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqA 1511 (2239)
++|+|||||+++|.||++++ .++||+.|+. ++..|..+...++++
T Consensus 801 ~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~~l~~~~~~~ 845 (866)
T COG0553 801 IDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHHHHHHHHhhh
Confidence 99999999999999999976 3899999998 578899999999986
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=568.13 Aligned_cols=463 Identities=32% Similarity=0.455 Sum_probs=375.2
Q ss_pred hccCCccccCCCChHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
-.+||.-|. ..|-|||++||.|+..... ...|||||||||.|||||+|+|++. .....|+|||||.-.+.||.+
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~n 248 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKN 248 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHH
Confidence 357898876 4899999999999998665 5578899999999999999999876 234568999999999999999
Q ss_pred HHHHHCC-CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh-----------------hhhcccCCceEEEecc
Q 000101 1068 ELHKWLP-SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDWKYIIIDE 1129 (2239)
Q Consensus 1068 Ef~KwaP-slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD-----------------~s~L~kikWd~VIIDE 1129 (2239)
||.++.. .+++.+|+|.+.... . .....|+||+|||..+-.. .+.|..++|..||+||
T Consensus 249 EI~~~T~gslkv~~YhG~~R~~n--i--kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDE 324 (791)
T KOG1002|consen 249 EIERHTSGSLKVYIYHGAKRDKN--I--KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDE 324 (791)
T ss_pred HHHHhccCceEEEEEecccccCC--H--HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhh
Confidence 9999985 688999999864322 1 2345899999999887432 3567888999999999
Q ss_pred cccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCCh---------------------------
Q 000101 1130 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--------------------------- 1182 (2239)
Q Consensus 1130 AHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~--------------------------- 1182 (2239)
||.||+..|...+++..+.+.+||+|||||+||++.|||+|+.||....|.-+
T Consensus 325 AH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~ 404 (791)
T KOG1002|consen 325 AHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNI 404 (791)
T ss_pred hcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchh
Confidence 99999999999999999999999999999999999999999999977665311
Q ss_pred H----HHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhc--CCCCceEEEEEeccCHHHH
Q 000101 1183 K----AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQS 1256 (2239)
Q Consensus 1183 k----~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVek--dLP~K~e~VV~c~MS~~Qr 1256 (2239)
. -|.....+|+...|... .........|.+|..+||||+|-+-.. .|||.+..+..--++..+.
T Consensus 405 m~h~~~~n~~mlk~IqkfG~eG----------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 405 MQHTCFFNHFMLKPIQKFGVEG----------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred hhhhhhhcccccccchhhcccC----------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHH
Confidence 0 11122223443333211 112234578889999999999876444 4899999999999999999
Q ss_pred HHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC-----------------ccccch
Q 000101 1257 AIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-----------------FSDLSK 1319 (2239)
Q Consensus 1257 ~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~-----------------~~~~s~ 1319 (2239)
.+|+.+........+...+.+.+.. .|..+...|.+||+.+.||+|+.-. ..+...
T Consensus 475 D~YeSLY~dSkrkfntyieeGvvlN-------NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ae 547 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVVLN-------NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAE 547 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhhhh-------hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhh
Confidence 9999887655444444444444333 3778899999999999999984210 000000
Q ss_pred h-----------------------------------------------------------------hHhhcccHHHHHHH
Q 000101 1320 D-----------------------------------------------------------------FLVKSCGKLWILDR 1334 (2239)
Q Consensus 1320 d-----------------------------------------------------------------~Li~~SGKLelLdr 1334 (2239)
+ .-+..|.|++.|.+
T Consensus 548 d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~E 627 (791)
T KOG1002|consen 548 DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVE 627 (791)
T ss_pred hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHH
Confidence 0 01456778999988
Q ss_pred HHHHHHhcC--CeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCC
Q 000101 1335 ILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1412 (2239)
Q Consensus 1335 IL~kLkatG--hKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNL 1412 (2239)
-|..+.+.. -|.|||+||+.++|+|.-.|...|+.++.|.|+|+...|...|+.|.+ +.+|.|||+|.+|||+.|||
T Consensus 628 El~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNL 706 (791)
T KOG1002|consen 628 ELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNL 706 (791)
T ss_pred HHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeee
Confidence 888876554 489999999999999999999999999999999999999999999986 89999999999999999999
Q ss_pred CcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHH
Q 000101 1413 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1492 (2239)
Q Consensus 1413 qaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~ 1492 (2239)
+.|..|+++||||||+..-||++|+|||||.++|+|++|+. -++||++
T Consensus 707 teASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--------------------------------EnsiE~k 754 (791)
T KOG1002|consen 707 TEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--------------------------------ENSIEEK 754 (791)
T ss_pred chhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------hccHHHH
Confidence 99999999999999999999999999999999999999964 2789999
Q ss_pred HHHHHHHhhHHHHHHHHhc
Q 000101 1493 IRNNIQQYKIDMADEVINA 1511 (2239)
Q Consensus 1493 Ile~lqq~Kldi~dkVIqA 1511 (2239)
|++ +++.|.+|....|+.
T Consensus 755 Iie-LQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 755 IIE-LQEKKANMIHATIGQ 772 (791)
T ss_pred HHH-HHHHHhhhhhhhcCC
Confidence 997 788888888877754
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=568.99 Aligned_cols=468 Identities=26% Similarity=0.413 Sum_probs=378.6
Q ss_pred hccCCccccCCCChHHHHHHHHHHHHhhcC-CCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH
Q 000101 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYNN-KLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA 1060 (2239)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~n-~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~S 1060 (2239)
+++.|..+. ..|.|||+.|+.||+..... ..||||||+||||||+..|++|..-.... ....++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 445676664 48999999999999976653 56789999999999999999997654321 1223699999999
Q ss_pred HHHHHHHHHHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH----------hhhhcccCCceEEEec
Q 000101 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIIID 1128 (2239)
Q Consensus 1061 LLsQW~~Ef~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k----------D~s~L~kikWd~VIID 1128 (2239)
|+.||..||.+-.. -+.|++|+|... |.--. .....|+||||||..+.+ ....|..+.|..||+|
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~--~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILD 470 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-REISA--KELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILD 470 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCH--HHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhh
Confidence 99999999998874 578899999864 21111 233489999999999876 1356888999999999
Q ss_pred ccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1129 EAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1129 EAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
|||.|+|+.++.+.+++.+.+..||+|||||++|++-|+|+|+.||.-..|++...|.+|+..+-..
T Consensus 471 EAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~------------- 537 (901)
T KOG4439|consen 471 EAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG------------- 537 (901)
T ss_pred hhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999988644222
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhc-----CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCc-----------
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP----------- 1272 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVek-----dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~----------- 1272 (2239)
...||.-+.++.||||+|..+-. .||.+...++.+.|+..+...|+-+.......+..
T Consensus 538 ------g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~ 611 (901)
T KOG4439|consen 538 ------GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNND 611 (901)
T ss_pred ------chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 23467778899999999998766 79999999999999999999997654321111000
Q ss_pred -h-----------hHHhh------hhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc------------------
Q 000101 1273 -E-----------DEKRR------VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD------------------ 1316 (2239)
Q Consensus 1273 -~-----------~ek~~------l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~------------------ 1316 (2239)
. .+... ......+.......++-.+++||++|+||.+....++.
T Consensus 612 ~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~ 691 (901)
T KOG4439|consen 612 GGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEE 691 (901)
T ss_pred cCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhh
Confidence 0 00000 00000111223344778899999999999552211100
Q ss_pred ----------------cc---------h--hhHhhcccHHHHHHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHcCC
Q 000101 1317 ----------------LS---------K--DFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368 (2239)
Q Consensus 1317 ----------------~s---------~--d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~rGi 1368 (2239)
.. . -...+.|.|+..+..+|..+ ..+..|++|.+||+.++++++..|...|+
T Consensus 692 ~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~ 771 (901)
T KOG4439|consen 692 DNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGH 771 (901)
T ss_pred hHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCe
Confidence 00 0 01234678999999998888 66789999999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1369 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1369 ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
.|..++|.+..++|+.+|+.||..++..+|+|||.-|||.||||..|+++|++|..|||+.+.||++|++|+||+|+|+|
T Consensus 772 ~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 772 IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1449 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1449 yrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
|+|+. .++||++|.. ++.+|++++.-|+.+.
T Consensus 852 hR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G~ 882 (901)
T KOG4439|consen 852 HRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTGS 882 (901)
T ss_pred EEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccCc
Confidence 99975 3899999997 8999999999999743
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=500.09 Aligned_cols=481 Identities=32% Similarity=0.456 Sum_probs=367.4
Q ss_pred CChHHHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
.|+|||+-||.||.... ..+.|||||+.||||||+|+|+|+--++. .-..+.+|+|||..+|.||..||.
T Consensus 254 v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 254 VLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHhh
Confidence 69999999999986422 25789999999999999999999988775 455678999999999999999999
Q ss_pred HHCCC-----------CceEEEec---chhhHHHHHHHHhhcCccEEEEehhHHHHh-----------------------
Q 000101 1071 KWLPS-----------VSCIYYVG---AKDQRSRLFSQVAALKFNVLVTTYEFIMYD----------------------- 1113 (2239)
Q Consensus 1071 KwaPs-----------lkvvvy~G---skd~Rk~l~~~i~~~kfdVVITTYE~L~kD----------------------- 1113 (2239)
.|.|. +.+.++.. +-+.|.....++. ..-.|++.-|++++-.
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv-~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i 411 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV-QTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFI 411 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh-ccCCEEEehHHHHHHHHHhcccccCCccccccccCCccc
Confidence 99975 22333322 2234444444333 2446999999988532
Q ss_pred ---------------hhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcc
Q 000101 1114 ---------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV 1178 (2239)
Q Consensus 1114 ---------------~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~i 1178 (2239)
...|.+-..++|||||+|||||....++.+|+.+++++|+.|||-|+||+|-|+|++++|+.|..
T Consensus 412 ~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~y 491 (1387)
T KOG1016|consen 412 KDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKY 491 (1387)
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccc
Confidence 12233446799999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHH
Q 000101 1179 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 1258 (2239)
Q Consensus 1179 F~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~L 1258 (2239)
+++..+|...|.+|+.++...+..-++..-. ....+.||.+|.-|+-||.-..+...||.+.++|+.+.||..|+.|
T Consensus 492 LGTR~eF~nmFErPI~NGQCvDStPdDvklm---ryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~L 568 (1387)
T KOG1016|consen 492 LGTRKEFINMFERPIKNGQCVDSTPDDVKLM---RYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQL 568 (1387)
T ss_pred cchHHHHHHHhhccccCCccccCChhHHHHH---HHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHH
Confidence 9999999999999999998877776654432 3346789999999999999999889999999999999999999999
Q ss_pred HHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc----------------------
Q 000101 1259 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD---------------------- 1316 (2239)
Q Consensus 1259 Y~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~---------------------- 1316 (2239)
|+.+..... +....+... .+ .-+..+.-+.||+|||.+.|..+..
T Consensus 569 Y~~Fm~d~~---------r~~~~~~~~---~~-NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~ 635 (1387)
T KOG1016|consen 569 YRNFMLDAK---------REIAANNDA---VF-NPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQ 635 (1387)
T ss_pred HHHHHHHHH---------Hhhcccccc---cc-ChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccccc
Confidence 987642211 000000000 00 0011233455666777553211000
Q ss_pred --------------------------------------------------cch-------hhHhhcccHHHHHHHHHHHH
Q 000101 1317 --------------------------------------------------LSK-------DFLVKSCGKLWILDRILIKL 1339 (2239)
Q Consensus 1317 --------------------------------------------------~s~-------d~Li~~SGKLelLdrIL~kL 1339 (2239)
+.. .-+...+.|+.++.+++.+-
T Consensus 636 ~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des 715 (1387)
T KOG1016|consen 636 QSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDES 715 (1387)
T ss_pred CCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccc
Confidence 000 00122234444555555555
Q ss_pred HhcCCeEEEEEccHHHHHHHHHHHHHcC------------------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000101 1340 QRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1401 (2239)
Q Consensus 1340 katGhKVLIFSQ~t~~LDILed~L~~rG------------------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLL 1401 (2239)
..-|.|+|||++....+|.|+++|..+. ..|+++||.++..+|+++|++||++-+-...|||
T Consensus 716 ~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfll 795 (1387)
T KOG1016|consen 716 TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLL 795 (1387)
T ss_pred cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeee
Confidence 5668999999999999999999998652 4689999999999999999999985433358999
Q ss_pred eccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcc
Q 000101 1402 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1481 (2239)
Q Consensus 1402 STrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~g 1481 (2239)
||++|..||||-.|+.+|+||..|||..+.||++|++|+||+|+|+||||+.
T Consensus 796 strag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm---------------------------- 847 (1387)
T KOG1016|consen 796 STRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM---------------------------- 847 (1387)
T ss_pred hhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh----------------------------
Confidence 9999999999999999999999999999999999999999999999999964
Q ss_pred cchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCccCCHHHHHHHHHHHHhhhh
Q 000101 1482 KDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1535 (2239)
Q Consensus 1482 kd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~kst~eErr~~Le~LL~~ee 1535 (2239)
..++|..|+.+ +-.|..|.+.|++.-.-+..- -+..++.||...+
T Consensus 848 ----D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~----s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 848 ----DNSLEKKIYDR-QISKQGMSDRVVDDANPDANI----SQKELENLLMYDE 892 (1387)
T ss_pred ----hhhhHHHHHHH-HHhhccchhhhhcccCccccc----cHHHHHHHhhhhh
Confidence 26788888874 556788888888654333222 2345677777543
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=528.27 Aligned_cols=436 Identities=19% Similarity=0.223 Sum_probs=312.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|.|||+..+.+++..+ ..+.||||||||||||+|++++.+++. .+..+++|||||.+|+.||..|+.+|+. +..
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCe
Confidence 369999999998876543 456799999999999999999888775 5677899999999999999999988874 444
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh---hhcccCCceEEEecccccccCh---hhHHHHHhhcc--ccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY--RCQ 1150 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~L--ka~ 1150 (2239)
.++.+........-.......++++|+||+.+.++. ..+....|++|||||||++++. .++.++.+..+ ++.
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 555443221100000012235789999999998753 4566779999999999999853 46668888777 567
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC--Cc-------ccCCCCCCCChhhHH-------------
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ--PF-------QKEGPTHNADDDWLE------------- 1208 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k--Pf-------~~~g~~~~~e~d~l~------------- 1208 (2239)
++|+|||||++|+..|+|++|+||+|+.|++...|.+.... ++ .............+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 89999999999999999999999999999999999865432 11 011100000000000
Q ss_pred ---------HHHHHHHHHHHHH--hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHH-HHHhcCcccCchhHH
Q 000101 1209 ---------TEKKVIIIHRLHQ--ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLRVDPEDEK 1276 (2239)
Q Consensus 1209 ---------~ee~~lii~RLhk--lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~-I~~~~~l~l~~~~ek 1276 (2239)
......++..|.. -...+|+|+++.+|. .+|.+..+.+.++|.+.....+.. +..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~~~------------ 453 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVSLEA------------ 453 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHhHHH------------
Confidence 0001111111111 123678899999876 589999999999887654433321 000
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHH
Q 000101 1277 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 1356 (2239)
Q Consensus 1277 ~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~L 1356 (2239)
.++. |.+|-..+..+. ....-+..+.|+..|..+|.... ++||||||++..++
T Consensus 454 ----------------------~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~ 506 (956)
T PRK04914 454 ----------------------RARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATA 506 (956)
T ss_pred ----------------------HHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHH
Confidence 0000 011100000000 00001234579999999888654 78999999999999
Q ss_pred HHHHHHH-HHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhh
Q 000101 1357 DILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1435 (2239)
Q Consensus 1357 DILed~L-~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiG 1435 (2239)
+.|.+.| ...|+++..|||+++..+|.++++.|+.+++.+. |||||++||+||||+.|++||+||+||||..++||+|
T Consensus 507 ~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIG 585 (956)
T PRK04914 507 LQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIG 585 (956)
T ss_pred HHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhc
Confidence 9999999 4679999999999999999999999997544454 5788899999999999999999999999999999999
Q ss_pred hhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1436 RAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1436 RAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
|+||+||++.|.||+++. .+++++.|... ...|+++.+.++..|
T Consensus 586 R~~RiGQ~~~V~i~~~~~--------------------------------~~t~~e~i~~~-~~~~l~ife~~~~~~ 629 (956)
T PRK04914 586 RLDRIGQKHDIQIHVPYL--------------------------------EGTAQERLFRW-YHEGLNAFEHTCPTG 629 (956)
T ss_pred ccccCCCCceEEEEEccC--------------------------------CCCHHHHHHHH-HhhhcCceeccCCCH
Confidence 999999999999998754 25777777763 355666666666554
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=461.48 Aligned_cols=418 Identities=27% Similarity=0.333 Sum_probs=317.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv 1079 (2239)
.|.|||++||.|.+. .+..+|||||||||||||||++..|+.. .+|.|||||.++...|..+|.+|+|.+..+
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 599999999999886 5666799999999999999999887653 469999999999999999999999987653
Q ss_pred E-EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc--ccceEEEec
Q 000101 1080 Y-YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLT 1156 (2239)
Q Consensus 1080 v-y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L--ka~rRLLLT 1156 (2239)
. ..++.+.-. .......|.|.||+.+......|..-+|.+||+||+|.+|+..++.++++..+ ...+.||||
T Consensus 271 ~vv~~~~D~~~-----~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLS 345 (689)
T KOG1000|consen 271 FVVDKSSDPLP-----DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLS 345 (689)
T ss_pred EEEecccCCcc-----ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEec
Confidence 2 223322110 01123468999999999999999999999999999999999999999988876 678899999
Q ss_pred CCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh-hHHhhHhHhhh
Q 000101 1157 GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFMLRRRVEDV 1235 (2239)
Q Consensus 1157 GTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr-PFmLRRlKkDV 1235 (2239)
|||.-..+.|||.++..+++.+|.+..+|-..|..--...-..+ -........|+.+|. ..|+||+|.+|
T Consensus 346 GTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D---------ykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 346 GTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD---------YKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred CCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee---------cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876643211100000 000112345666664 45999999999
Q ss_pred hcCCCCceEEEEEeccCHHHHHHHHHHHHhcCc-ccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000101 1236 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTL-RVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1314 (2239)
Q Consensus 1236 ekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l-~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~ 1314 (2239)
+++||+|...++++ ....+-+..+.+...... ......++ .-...++..+.
T Consensus 417 L~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~~~~~e~---------------~~~~l~l~y~~------------ 468 (689)
T KOG1000|consen 417 LKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTKVNSMER---------------KHESLLLFYSL------------ 468 (689)
T ss_pred HhhCCccceEEEEE-cCCccchHHHHHHHHhhhcchhhhhhh---------------hhHHHHHHHHH------------
Confidence 99999997666554 333333333333221110 00000000 00000111110
Q ss_pred cccchhhHhhcccHHHHHHHHHHH----HHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1315 SDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1315 ~~~s~d~Li~~SGKLelLdrIL~k----LkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
..-.|+..+.+.|.. ..+.+.|+||||....++|-|..++..+++.++||||+|+..+|..+++.|+
T Consensus 469 ---------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 469 ---------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred ---------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 111244444443333 3456889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccC
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 1470 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~ 1470 (2239)
. +.++.|-+||..|+|.||+|++|+.|||...+|||...+||.+|+|||||+..|.|+||++
T Consensus 540 ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA----------------- 601 (689)
T KOG1000|consen 540 T-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA----------------- 601 (689)
T ss_pred c-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe-----------------
Confidence 6 6788999999999999999999999999999999999999999999999999999999987
Q ss_pred CccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHH
Q 000101 1471 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI 1509 (2239)
Q Consensus 1471 gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVI 1509 (2239)
++++++.++..+ +.|+++.+.+-
T Consensus 602 ---------------KgT~Ddy~Wp~l-~~KL~vl~s~g 624 (689)
T KOG1000|consen 602 ---------------KGTADDYMWPML-QQKLDVLGSVG 624 (689)
T ss_pred ---------------cCchHHHHHHHH-HHHHHHHhhcc
Confidence 478889998866 45777655554
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=506.37 Aligned_cols=387 Identities=40% Similarity=0.621 Sum_probs=344.2
Q ss_pred ccCCcccc--CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 990 MRQPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 990 ~~qPs~L~--ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
..+|..+. ++.|.+||.+|++|+...+..+-.+|||||||+|||+++|.++..++......+|+||++|.+++.||..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 36777665 4899999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHH--------------------HhhcCccEEEEehhHHHHhhhhcccCCceEEEe
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQ--------------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIII 1127 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~--------------------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VII 1127 (2239)
++..|+|.+.++.|.|+...|.-+... .....|+|++++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 999999999999999998876543211 234578999999999999999999999999999
Q ss_pred cccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1128 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1128 DEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
||+|+++|..+++.+.+..+...++++|||||++|++.+|+++||||.|+.|++...|.+.|..-
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~--------------- 507 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI--------------- 507 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------
Confidence 99999999999999999999999999999999999999999999999999999998888766421
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHH
Q 000101 1208 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
.....+..||.++.|++|||+|.||.+.+|.|.+.++.+.|++.|+.+|+.+.....-.+.. .
T Consensus 508 ---~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------------~ 570 (696)
T KOG0383|consen 508 ---SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------------G 570 (696)
T ss_pred ---hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--------------c
Confidence 12235789999999999999999999999999999999999999999999987653211110 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcc-----ccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHH
Q 000101 1288 KVYKTLNNRCMELRKTCNHPLLNYPYFS-----DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1362 (2239)
Q Consensus 1288 k~~ksL~niImqLRKiCnHP~L~~p~~~-----~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~ 1362 (2239)
..--.++|++|+|||+|+|||++..... ......++..++|+.+|..++++++..|||||||+||+.++|+|+++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 1235678999999999999999865221 12235578999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccc
Q 000101 1363 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1409 (2239)
Q Consensus 1363 L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeG 1409 (2239)
|...+ .|.|+||..+..+|+.++++||.+++.-||||+||+|||+|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999 99999999999999999999999999999999999999998
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=502.53 Aligned_cols=922 Identities=27% Similarity=0.223 Sum_probs=680.4
Q ss_pred CCCCccccccCCCCCCcccccccCccCcchHHHHHHHHhhhhcchHHHHhhcCCCcc-hhhhhcccCCCCcccCCCCCCC
Q 000101 8 SRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPDGN-EAILAYQVGSLPGLMGGGNFAS 86 (2239)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (2239)
..+++.|+++|+++.+..+..+.++- +..|+++. +|+.-..-|+|.++..++| +...+|++|+.++|+++++|.+
T Consensus 14 ~~~~~~s~~~a~~~~sr~~~l~~~~~---~~~~~~~~-q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 89 (1157)
T KOG0386|consen 14 PAGRTRSTISALSPLSRSSPLQQQQQ---QAVQQQQP-QQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLS 89 (1157)
T ss_pred ccchhHHHHHhhhhhhhcCCCchhhH---HHHhhhhh-hhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccC
Confidence 34777788888876665554443210 01111110 1111123366778888999 8899999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHhhhhhhhhccccccc-----cccccccHHHHHHHHHHHHHHhhhhhhHhHHhhhh--hcCCC
Q 000101 87 PPGSMQPPQQSRKFFDFAQQHAISQESQNRSQG-----VEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAK--LGMLG 159 (2239)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (2239)
+|++|++|+++|.||...++.+..+.-.+..++ .-++..|++|++|+|++++++.|+. |+++. |||++
T Consensus 90 ~p~~~~~~~~~r~~~~sp~~~~~~q~~~~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~-----q~~~~~~~~~~~ 164 (1157)
T KOG0386|consen 90 SPGSMQMPQQSRNFFESPQQPQQQQQQGSSTQEGKITPLDQQNINPMQQARIQFRMQAQLQEL-----QQLARSLMGELK 164 (1157)
T ss_pred CCCcccccCCCcccccCCCchhhhcccccccCcCccccCCcccccHHHHHHHHHHHHHHHHHH-----HHhhhcchHHHh
Confidence 999999999999999988765444443333333 4578999999999999999999887 77777 99999
Q ss_pred CCC-CcchhhhccchhhHHhhhhhhhhhhhhccCCCCch--hhhchhhhccCcccc----CccccCCCCCCCCCCcCccC
Q 000101 160 PAS-GKDQDMRMGNLKMQELISMQSANQAQASSSKNSSE--QFGRGEKQMEQPQQQ----VSDQKGEPKPPSQQTLGGQG 232 (2239)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (2239)
.++ ++|++.||+++.||.. ....++-.++++++.+-. .|.|++.|+++.--. --.||.|...- ..+..+++
T Consensus 165 ~~a~~e~~~lrl~~~q~qlr-~~~~~~~~~~~~~~~~~n~~~~~R~~~q~~~~~r~te~Le~qqr~e~erk-~r~~~~~~ 242 (1157)
T KOG0386|consen 165 SSAVGEDQALRLLMLQMQLR-NPVSQPLRRDSSSETALNPKAFKRGKRQTLSEARLTEKLEKQQRLETERK-RRVKHGQF 242 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHh-hhhhcccccccccccccCHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 887 9999999999999987 344445567778877777 899999998887611 11233322211 56677999
Q ss_pred CCCccccccchhhHHhHHhhhhcchhHHHHHH---HHHHHhccCCCCCcccHhHHHHHhHhHHHHHHhhcccccCCCCCC
Q 000101 233 MAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309 (2239)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2239)
|++++++|++.++.|+..+|+++++.+.++|| ++|+++++||.++++|++.|.+ .-|.+|.++.++.+.+..++
T Consensus 243 l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~---~DeE~Y~kl~dq~Kd~Rl~~ 319 (1157)
T KOG0386|consen 243 LPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKH---NDEEGYRKLQDQKKDNRLSQ 319 (1157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH---hhHHHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999 6799999999999999888776 46779999999999999999
Q ss_pred CCCCCCCCccccccCccCCCC--CCCCCCCCccCCCCCCCCC---CCCCCCCCCCCcccccccccchhhcccccccCcCC
Q 000101 310 SSPVPVSKQQVTSPTIAGENS--PHANSSSDVSGQSGSAKAR---PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDN 384 (2239)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (2239)
.-..+.+....-+.+|-.+.+ +|+++.+|++++++.+|++ .......+-++..+-+.+ ..+|.+++.|++.
T Consensus 320 LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~~i~~~ak~~~~d~~~s~~~Yys~AH~I~E~----v~~Qps~l~GG~L 395 (1157)
T KOG0386|consen 320 LLSQTDSYLPSLSSVVKGQKSENPDANSASDISGISGSAKADVDDHAESNGSYYSTAHPIKEN----VAKQPSSLQGGEL 395 (1157)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcchhhhhhhcchhHHHhcchhhhc----cccCcchhcCCCC
Confidence 999888888777777878887 9999999999999999999 666666666776666555 3479999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCchhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000101 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPV--KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGG 462 (2239)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (2239)
..-....+---++++.-|+.+-.+.-+ ++....-+ .-.---|..+|+-.++++-+.+.....++++.--+- +...-
T Consensus 396 k~YQl~GLqWmVSLyNNnLNGILADEM-GLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP-Sv~~i 473 (1157)
T KOG0386|consen 396 KEYQLHGLQWMVSLYNNNLNGILADEM-GLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP-SVQKI 473 (1157)
T ss_pred chhhhhhhHHHhhccCCCcccccchhc-ccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc-ceeee
Confidence 554444444445555556666554431 22211100 111234666777777788777777777776654441 01111
Q ss_pred CCCCCCcccCCcchhHHHHHHHHHHHhhccccCCCCChHHHHHhcCCCccccccccccccccccccccCCCCCCcchhhh
Q 000101 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQ 542 (2239)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (2239)
.-.+.|+.|.||+++|+| .|.++|+|++.+.+. +.++|..|.+++...+ ++....++...-.+...+ --..+
T Consensus 474 ~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiik---dk~lLsKI~W~yMIID---EGHRmKNa~~KLt~~L~t-~y~~q 545 (1157)
T KOG0386|consen 474 QYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIK---DKALLSKISWKYMIID---EGHRMKNAICKLTDTLNT-HYRAQ 545 (1157)
T ss_pred eeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcC---CHHHHhccCCcceeec---ccccccchhhHHHHHhhc-cccch
Confidence 222778999999999999 999999999999988 9999999999998888 777777777766666655 45566
Q ss_pred hcccccCCcccccccccCCCCCcccccccCCCCcccCC-CccCCcccc--CCCccccCCCCccccCCcc-cccChhhhhh
Q 000101 543 LRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVT--KEPAPVVVPGKEEQQAPVS-SVKSDQEVEC 618 (2239)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 618 (2239)
.|-+..++ .+|.--.-++..+...+....+...+-.. .-+.+.+.. .+-......-+.++...++ +++..+.+..
T Consensus 546 ~RLLLTGT-PLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 546 RRLLLTGT-PLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhcCC-hhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 77777776 66665555566666665555544333322 112222222 2222222233344555566 8888888888
Q ss_pred cccccccccCCCCCCCCccCCCCCCcccccccCCCCCCCCCCCCccccccccCCCCCCCCccccccCCCCccccccCCCC
Q 000101 619 GLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNN 698 (2239)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 698 (2239)
.-+..| |-..+.+|.+++. --|+.=+........+.|.+..+.|.++|++++.+.||...-+.. ..|-+.+
T Consensus 625 VE~~LP---dKve~viKC~mSa-----lQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l-f~~ve~~ 695 (1157)
T KOG0386|consen 625 VEQELP---DKVEDVIKCDMSA-----LQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL-FANVENS 695 (1157)
T ss_pred HhhhCc---hhhhHhhheehhh-----hhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh-hhhhccc
Confidence 888877 5556667766532 223334445555666777778899999999999999999988444 2145677
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 000101 699 LTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMA 778 (2239)
Q Consensus 699 ~~~~~d~~~~~~~~~~~~~~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~~~~ 778 (2239)
...-+|+.+|+...++.-+-.+++--|+.....+......+++.+.+...+.++-+++..|+-|-+.++... +.+...
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~--ll~~FN 773 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD--LLEIFN 773 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH--HHHHhc
Confidence 778888899999999987777788888888888877777788889999999999999999999999999887 677788
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhh
Q 000101 779 MPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILRE-FSKRK 857 (2239)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~-~~kr~ 857 (2239)
+|++.|..|...|.+.++.+-.|+.......+.+....+..|+++..|.+|..++.+..+..+|.++|++++++ +.|+.
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~ 853 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLD 853 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcC
Confidence 99999999999998888888777655445555666677888999999999999999999999999999999988 77888
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcc----hHHHHHHHHHhHhhhHH---HHHHhhhhhHHhhhhHH-----H
Q 000101 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGD----AAERYAVLSSFLTQTEE---YLYKLGSKITAAKNQQE-----V 925 (2239)
Q Consensus 858 e~~~~~r~~~lk~~d~e~y~~ll~~~k~~~~~d----~~~r~~~l~~lL~qte~---~l~~l~~~v~~~k~~q~-----~ 925 (2239)
.+.+-.++.++.+++.+.|++++.++....+++ +..+++.|..+|.++|+ |+++|+......++.+. +
T Consensus 854 ~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ 933 (1157)
T KOG0386|consen 854 VDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLV 933 (1157)
T ss_pred chHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhh
Confidence 888888999999999999999988766655554 55677789999999999 99999988876666555 4
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHH----HHHHhhhhhHHHhhhhhccCCC
Q 000101 926 EEAANAAAAAARLQG---LSEEEVR----SAAACAGEEVMIRNRFLEMNAP 969 (2239)
Q Consensus 926 ~~~~~~~~~~~r~~g---l~~ee~~----~~~~~~~ee~~i~~~f~e~~~p 969 (2239)
++.........+..+ +++++.. ....|.-.++.+++.+.++..+
T Consensus 934 ee~e~p~~i~~~~~~~~~~~~~~~~~~~~~rg~r~Rkev~y~d~~te~q~~ 984 (1157)
T KOG0386|consen 934 EEAELPADIYKRDQGVERLSEEEEEEKILGRGRRARKEVVYSDRLTEMQWL 984 (1157)
T ss_pred hhhhcHHHHHhcchhhhhhhhhhhhhccccccccccceeecccccchhhhh
Confidence 444444334444444 3433333 2223444555555555544443
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=461.23 Aligned_cols=443 Identities=30% Similarity=0.441 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHHCC-
Q 000101 1003 DYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lie~k~------~~GP~LIVVP~SLLsQW~~Ef~KwaP- 1074 (2239)
.+|..+..|+..... .-.|||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 444444444433322 3367899999999999999999876443222 45678999999999999999966664
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEE
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1153 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRL 1153 (2239)
.+.+.+|+| |.... .....++||||||..+.. ..+..+.|-.||+||||.++|..+..++++..+.+.+||
T Consensus 215 ~~l~v~v~~g----r~kd~--~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RW 286 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKDK--SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRW 286 (674)
T ss_pred cceEEEEecc----ccccc--chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccceee
Confidence 467778888 21111 233578899999999875 567779999999999999999999999999999999999
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
.|||||++|++.|||+++.|+.-..+..+..|...+..|+..... .....++..+|..+++||+|.
T Consensus 287 cLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~l~~~L~~v~lrrtK~ 352 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKTLQGILKKVMLRRTKE 352 (674)
T ss_pred eecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999988888765410 235678899999999999886
Q ss_pred hh-----hcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1234 DV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1234 DV-----ekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
.- .-.||++...++.|.++..++.+|..+............... .....+..+.-.+.+||++|+||+
T Consensus 353 ~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~-------~~~~~Y~~~l~~lLrlrq~c~h~~ 425 (674)
T KOG1001|consen 353 MEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEG-------TVSSTYAFFLKNLLRLRQACDHSL 425 (674)
T ss_pred ccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhc-------hhhhhHHHHHHHHHHHHHHccchH
Confidence 32 236999999999999999999999988765433222111111 112346677778889999999998
Q ss_pred CCCCCccccc----------------------------hhhHhh------------------------------------
Q 000101 1309 LNYPYFSDLS----------------------------KDFLVK------------------------------------ 1324 (2239)
Q Consensus 1309 L~~p~~~~~s----------------------------~d~Li~------------------------------------ 1324 (2239)
++........ ...++.
T Consensus 426 lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 426 LVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred hhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 8432110000 000001
Q ss_pred --------------cccHHHHHHHHHHHHHhcCC-eEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1325 --------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1325 --------------~SGKLelLdrIL~kLkatGh-KVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
.+.|+..+..+|........ ++|||||++.++++++-.|...++.+.+++|.++...|.+.+..|
T Consensus 506 s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~ 585 (674)
T KOG1001|consen 506 SANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDF 585 (674)
T ss_pred hcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccc
Confidence 13455555555554433334 999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhcc
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRS 1469 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls 1469 (2239)
+ .+....|+|+|.+|||.||||+.|++||++|++|||..+.||++||||+||+++|.|+++..
T Consensus 586 ~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i---------------- 648 (674)
T KOG1001|consen 586 P-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII---------------- 648 (674)
T ss_pred c-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh----------------
Confidence 9 58889999999999999999999999999999999999999999999999999999999854
Q ss_pred CCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHH
Q 000101 1470 GGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1508 (2239)
Q Consensus 1470 ~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkV 1508 (2239)
.++||++|++ +++.|..+.+..
T Consensus 649 ----------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 ----------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred ----------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 3799999998 778887766543
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=379.43 Aligned_cols=280 Identities=37% Similarity=0.685 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--CCeEEEechHHHHHHHHHHHHH
Q 000101 1004 YQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 1004 YQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~--GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
||+.||.||+..+ ....|||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7778899999999999999999999887643332 3699999999999999999999
Q ss_pred C-C-CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHH-----HhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1073 L-P-SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1073 a-P-slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~-----kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
+ + .+.+++|.|....+... ......++|+|+||+.+. .....+..++|++|||||+|+++|..+.+++++.
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS--KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT--SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred ccccccccccccccccccccc--ccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 9 4 67888888876222111 123457899999999999 6677888889999999999999999999999999
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
.+.+.++|+|||||+.|++.|||.+++||.|..+.+...|.++|..+ ..........+|..++.+
T Consensus 159 ~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~~L~~~l~~ 223 (299)
T PF00176_consen 159 KLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSYENIERLRELLSE 223 (299)
T ss_dssp CCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHHHHHHHHHHHHCC
T ss_pred ccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------ccccccccccccccccch
Confidence 99999999999999999999999999999999999999999988543 122333467789999999
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
|++||.++++...||+..+.++.|+|++.|+.+|+.+............ .........+...+++||++|+
T Consensus 224 ~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 224 FMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp CEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999889999999999999999999999988665443332211 1122456788899999999999
Q ss_pred CCCC
Q 000101 1306 HPLL 1309 (2239)
Q Consensus 1306 HP~L 1309 (2239)
||++
T Consensus 295 hp~l 298 (299)
T PF00176_consen 295 HPYL 298 (299)
T ss_dssp -THH
T ss_pred Cccc
Confidence 9976
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=380.08 Aligned_cols=333 Identities=18% Similarity=0.282 Sum_probs=241.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
..+|||||.+++.++.. -....+|||+++||+|||++++++++.+ .+++|||||.. ++.||..+|.+|+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 35899999999998864 1112579999999999999999888654 25899999987 68999999999973
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh----------hhhcccCCceEEEecccccccChhhHHHHHh
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
...+..|.|....+ ......|+||||+++... ...|....|++||+||||++.+ ....+.+
T Consensus 326 ~~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVL 396 (732)
T ss_pred CceEEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHHH
Confidence 45566676653321 123468999999998643 2345566899999999999964 3444567
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhh-cCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFL-lP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL 1223 (2239)
..+.+.+||+|||||++++ +.+..+++| .|.+|.- .|. .++
T Consensus 397 ~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~----------------------------------eLi 438 (732)
T TIGR00603 397 TIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWM----------------------------------ELQ 438 (732)
T ss_pred HhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHH----------------------------------HHH
Confidence 7788999999999999877 334444443 3433210 000 000
Q ss_pred hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKi 1303 (2239)
. ...|.+-....++|+|++.....|... .. .. +.+ | +
T Consensus 439 ~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~~--~~-------~~---------------k~~------l--~ 475 (732)
T TIGR00603 439 K-----------KGFIANVQCAEVWCPMTPEFYREYLRE--NS-------RK---------------RML------L--Y 475 (732)
T ss_pred h-----------CCccccceEEEEEecCCHHHHHHHHHh--cc-------hh---------------hhH------H--h
Confidence 0 123555666779999998764444211 00 00 000 0 0
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1304 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1304 CnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
+ ....|+..+..++......++|+||||.++..++.+...| +. ..|+|.|+..+|.
T Consensus 476 ~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 476 V-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred h-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0 1124888888888876678999999999999988888777 33 4489999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcce-----EEEEEEeh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE-----VKVIYMEA 1453 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKe-----V~VyrLva 1453 (2239)
+++++|+.+ +.+. +|+++++|++||||+.|++||++++++ |+..+.||+||+.|.+..+. +.+|.|++
T Consensus 532 ~il~~Fr~~-~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 532 QILQNFQHN-PKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHhC-CCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 999999852 2344 566679999999999999999999986 99999999999999987654 57777765
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=363.86 Aligned_cols=427 Identities=19% Similarity=0.192 Sum_probs=266.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs-- 1075 (2239)
.++|+||.+.+..++. .++|++++||+|||++++.++..++. ...+++|||||+ .|+.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4799999999887765 28999999999999999988887763 345789999998 5889999999998743
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChhhHHHHH--h-hccccc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARD--L-DRYRCQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~SKlska--L-k~Lka~ 1150 (2239)
..++.+.|......+. ......+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+ . ...+..
T Consensus 87 ~~v~~~~g~~~~~~r~---~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 87 EKIVVFTGEVSPEKRA---ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred ceEEEEeCCCCHHHHH---HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4677777754432211 12346799999999998764 34445579999999999997644332211 1 122455
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
++++|||||..+ ...+..+++.|....+..+..|...+...+.... ..+.... .......++.+|..++.++
T Consensus 164 ~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~------v~~~~v~-l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 164 LVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVK------IEWVRVE-LPEELKEIRDLLNEALKDR 235 (773)
T ss_pred EEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccce------eEEEEeC-CcHHHHHHHHHHHHHHHHH
Confidence 699999999876 5666666666644333222222222211111000 0000000 0012345677777777776
Q ss_pred hHhhhhcC-CCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhh------hcC-hhhHHHHHHHHHHHHHHHHH
Q 000101 1231 RVEDVEGS-LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV------QKN-PIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1231 lKkDVekd-LP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l------~k~-~~~~~k~~ksL~niImqLRK 1302 (2239)
++...... ++.....+....+...+..++..+..... ......... ... ..........+...+..++.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~ 312 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS---EGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLRE 312 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 66543221 22222222233334444444443322100 000000000 000 00000001122222223332
Q ss_pred HcCCCCCCCC---Ccccc-------chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeE
Q 000101 1303 TCNHPLLNYP---YFSDL-------SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1370 (2239)
Q Consensus 1303 iCnHP~L~~p---~~~~~-------s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky 1370 (2239)
.+.++..... .+.+. ....+....+|+..|.++|.++. ..+.||||||++..+++.|.++|...|+.+
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~ 392 (773)
T PRK13766 313 EARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKA 392 (773)
T ss_pred hccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCce
Confidence 2211100000 00000 00111234689999999999876 578999999999999999999999999999
Q ss_pred EeecCC--------CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1371 RRIDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1371 ~RLDGs--------ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
..++|. ++..+|.+++++|+.++.. +|++|+++++|+|++.|++||+||++||+..++||.||++|.|+
T Consensus 393 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 393 VRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred EEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 999987 8889999999999975433 68999999999999999999999999999999999999999876
Q ss_pred cceEEEEEEe
Q 000101 1443 KREVKVIYME 1452 (2239)
Q Consensus 1443 kKeV~VyrLv 1452 (2239)
+.||.++
T Consensus 470 ---~~v~~l~ 476 (773)
T PRK13766 470 ---GRVVVLI 476 (773)
T ss_pred ---CEEEEEE
Confidence 3455553
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=294.24 Aligned_cols=432 Identities=18% Similarity=0.216 Sum_probs=298.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCC----CeEEEechH-HHHHHHHH---H
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYG----PHLIIVPNA-VLVNWKSE---L 1069 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-k~~~G----P~LIVVP~S-LLsQW~~E---f 1069 (2239)
..+.|-|..++..++. +....+-..||+|||+.++..+...+.. ..... -.|||+|+. |..|..+. |
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3788999999988886 6777888899999999999998887732 22222 359999998 66665544 5
Q ss_pred HHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccCCceEEEecccccccC--hhhHHHHH
Q 000101 1070 HKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKD--RESVLARD 1143 (2239)
Q Consensus 1070 ~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrIKN--~~SKlska 1143 (2239)
..+++++++.+++|+... ......+.....+|+|.|++++..-.. .+......++|+|||+++.. +...+..+
T Consensus 103 ~~~l~~l~~~l~vGG~~v-~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~I 181 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSV-EEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181 (567)
T ss_pred HHhhhccceEEEecCccH-HHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHH
Confidence 555789999999999544 344556777889999999999875533 36555789999999999965 56677788
Q ss_pred hhccccceEEEe-cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1144 LDRYRCQRRLLL-TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1144 Lk~Lka~rRLLL-TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
|..++.++|.+| |||-.+. ..+
T Consensus 182 Ls~LPKQRRTGLFSATq~~~-v~d-------------------------------------------------------- 204 (567)
T KOG0345|consen 182 LSFLPKQRRTGLFSATQTQE-VED-------------------------------------------------------- 204 (567)
T ss_pred HHhcccccccccccchhhHH-HHH--------------------------------------------------------
Confidence 888999999887 8883100 000
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEec-c--CHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCR-M--SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~-M--S~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
|.-+.||..+. ..+... + ++....+
T Consensus 205 L~raGLRNpv~-----------V~V~~k~~~~tPS~L~~----------------------------------------- 232 (567)
T KOG0345|consen 205 LARAGLRNPVR-----------VSVKEKSKSATPSSLAL----------------------------------------- 232 (567)
T ss_pred HHHhhccCcee-----------eeecccccccCchhhcc-----------------------------------------
Confidence 00112221111 000000 0 0000000
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH--cCCeEEeecCCC
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--RQLVYRRIDGTT 1377 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~--rGiky~RLDGst 1377 (2239)
+ ...+...-|+.+|..+|.. ...+|+|||.......++....|.. ..+.++.|||.+
T Consensus 233 ----------~---------Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~ 291 (567)
T KOG0345|consen 233 ----------E---------YLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKM 291 (567)
T ss_pred ----------e---------eeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchh
Confidence 0 0012223478888888876 4578999997777777766666543 477899999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhh
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEk 1457 (2239)
+...|.++++.|..... -+|+||+++++|||++++|.||.||||-+|..+.||.||+.|.|......||.+-..+++
T Consensus 292 ~q~~R~k~~~~F~~~~~---~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 292 SQKARAKVLEAFRKLSN---GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred cchhHHHHHHHHHhccC---ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 99999999999987333 389999999999999999999999999999999999999999999888777766555555
Q ss_pred hhhhhhhh-hhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHH---------hccccCccCCHHHHHHHH
Q 000101 1458 ISSHQKED-ELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVI---------NAGRFDQRTTHEERRMTL 1527 (2239)
Q Consensus 1458 I~s~q~eK-e~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVI---------qAGkFD~kst~eErr~~L 1527 (2239)
+..+.... ..+... +. ....+.+...|..++.++.+-+...+...|. ..-+|+.++++-...+++
T Consensus 369 veFl~i~~~v~le~~--~~---e~~~~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~ 443 (567)
T KOG0345|consen 369 VEFLRIKGKVELERI--DT---EKASLSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATL 443 (567)
T ss_pred HHHHHhcCccchhhh--cc---cccchhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHH
Confidence 55554332 111111 00 0111123455555555554445555555554 235899999999999999
Q ss_pred HHHHhhhhcccccccCCCCHHHHHHHHhcChHHHHHHh--hhhhh-cCcchhhhhhccchHHHh
Q 000101 1528 ETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFD--QMDEE-FGWIEEMTRYDQVPKWLR 1588 (2239)
Q Consensus 1528 e~LL~~ee~~~e~~~~vp~deELN~~laRseeE~~lf~--~mD~e-~~~~~~l~e~~elp~~~~ 1588 (2239)
++||+ +|.|.||.+...-. . +|. .+|.+ +.|.+...|+.+-..+..
T Consensus 444 YgLl~-----------lP~M~Elk~~~~~~---~-~~~~~~id~~~ikykdkkrEk~Rq~~l~~ 492 (567)
T KOG0345|consen 444 YGLLR-----------LPKMPELKQYKIGE---F-FFPKPAIDFSEIKYKDKKREKQRQQKLKV 492 (567)
T ss_pred HHHHh-----------CCCcHHHhhhhccc---e-eccCCCcchhhhcccchHHHHHHHHHHHH
Confidence 99999 89999998874322 2 344 35554 688888888777666643
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=307.12 Aligned_cols=336 Identities=16% Similarity=0.192 Sum_probs=228.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
.++||+||.+++.-++. +.+|||...||+|||++++.++.+++. ...+++|||||+. |+.||..+|.+|..
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999977765 567899999999999988776665554 2334899999976 89999999999863
Q ss_pred CCce-EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceE
Q 000101 1075 SVSC-IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRR 1152 (2239)
Q Consensus 1075 slkv-vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rR 1152 (2239)
...+ .++.|... ....+|+|+|++.+.+....+ -.+|++|||||||++... .+...+..+ ++.++
T Consensus 186 ~~~~~~i~~g~~~----------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~ 252 (501)
T PHA02558 186 REAMHKIYSGTAK----------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKFK 252 (501)
T ss_pred ccceeEEecCccc----------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccceE
Confidence 3333 34444322 135689999999998654322 137899999999999753 345556666 57789
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
++|||||..... ..+.++.++.|-.. .. . ...++
T Consensus 253 lGLTATp~~~~~-~~~~~~~~fG~i~~---------------~v------~---------------~~~li--------- 286 (501)
T PHA02558 253 FGLTGSLRDGKA-NILQYVGLFGDIFK---------------PV------T---------------TSQLM--------- 286 (501)
T ss_pred EEEeccCCCccc-cHHHHHHhhCCceE---------------Ee------c---------------HHHHH---------
Confidence 999999954322 12222222111100 00 0 00000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1233 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
+ ...+.+.....+.+..+......+. ... +.. .+.
T Consensus 287 ~--~g~l~~~~~~~v~~~~~~~~~~~~~---------------------~~~-----~~~------~~~----------- 321 (501)
T PHA02558 287 E--EGQVTDLKINSIFLRYPDEDRVKLK---------------------GED-----YQE------EIK----------- 321 (501)
T ss_pred h--CCCcCCceEEEEeccCCHHHhhhhc---------------------ccc-----hHH------HHH-----------
Confidence 0 0112222223333333322110000 000 000 000
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
.+.....+..++..++..+...++++||||..+.+++.|.+.|...|+++..|||+++.++|..+++.|+.
T Consensus 322 --------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~- 392 (501)
T PHA02558 322 --------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG- 392 (501)
T ss_pred --------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-
Confidence 11122335566666777777788999999999999999999999999999999999999999999999985
Q ss_pred CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEeh
Q 000101 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1453 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLva 1453 (2239)
+...|+|.|++.+++|+|++.+|+||+++|+.+...++|++||++|.+..| .|.||.++.
T Consensus 393 -~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 393 -GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred -CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 344555556699999999999999999999999999999999999998775 588998854
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=293.17 Aligned_cols=420 Identities=20% Similarity=0.214 Sum_probs=258.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Ps 1075 (2239)
.+-|.||+..+.-.+. .|+|++..||||||++|+.++++.+...+ |.+|+++|+. |+.|-..-|.+++ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3679999998887775 48999999999999999999987765443 3899999976 8888888888887 55
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lka~- 1150 (2239)
..++.+.|...-..+. ..+.+-+|+|.|++.+.+|. ..+...++.+||+|||||.-... .-+.+....+.+.
T Consensus 87 ~~i~~ltGev~p~~R~---~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 87 DEIAALTGEVRPEERE---ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred hheeeecCCCChHHHH---HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 7788888874332221 23456789999999999985 46677789999999999985432 2344444444444
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCCh----HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR----KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~----k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
+.|+||||| -++...+...++-|..+-.--. .+...+.. .... .. -.....++-..+...|..+|+|.
T Consensus 164 ~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~-~~kv----e~--ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 164 LILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVK-KIKV----EW--IKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred eEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhc-ccee----EE--EeccCcHHHHHHHHHHHHHHHHH
Confidence 689999999 4566777777766644322100 11111110 0000 00 00001122233555666666663
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHH-hhhhc----------ChhhHHHHHHHHHH
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK-RRVQK----------NPIYQAKVYKTLNN 1295 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek-~~l~k----------~~~~~~k~~ksL~n 1295 (2239)
+ ..+++- -.....++. .++.+.................. ..+.. ......-+...+.+
T Consensus 236 L-k~L~~~--------g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~ 304 (542)
T COG1111 236 L-KPLKEL--------GVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQ 304 (542)
T ss_pred H-HHHHHc--------CceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 2 222221 011111111 12222221100000000000000 00000 00000111223333
Q ss_pred HHHHHHHHcCCCCC-------CCCCcccc-----chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHH
Q 000101 1296 RCMELRKTCNHPLL-------NYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEE 1361 (2239)
Q Consensus 1296 iImqLRKiCnHP~L-------~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed 1361 (2239)
-+..|..-|..-.. ..+++... .....--.-+|++.|.+||.+.. ..+.|||||++|+++++.|.+
T Consensus 305 Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~ 384 (542)
T COG1111 305 YLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVN 384 (542)
T ss_pred HHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHH
Confidence 33334333332000 00000000 00001112469999999999987 557899999999999999999
Q ss_pred HHHHcCCeEE-eecC--------CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHH
Q 000101 1362 YLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1432 (2239)
Q Consensus 1362 ~L~~rGiky~-RLDG--------sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQ 1432 (2239)
+|...|+... ++-| +|++++..++|+.|+.++-+ +|++|.+|.+|||++++|.|||||+.-++-..+|
T Consensus 385 ~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQ 461 (542)
T COG1111 385 FLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQ 461 (542)
T ss_pred HHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHH
Confidence 9999988875 5555 69999999999999975544 7999999999999999999999999999999999
Q ss_pred hhhhhcccCCcceEEEEEEeh
Q 000101 1433 AVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrLva 1453 (2239)
|.||++|- +.-+||.|++
T Consensus 462 R~GRTGR~---r~Grv~vLvt 479 (542)
T COG1111 462 RKGRTGRK---RKGRVVVLVT 479 (542)
T ss_pred hhCccccC---CCCeEEEEEe
Confidence 99999994 3444444543
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=297.14 Aligned_cols=347 Identities=22% Similarity=0.287 Sum_probs=252.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
..+||+||.+++.-++..+.....||+...||.|||+.++.++..+.. .+|||||.. |+.||...+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 458999999999888876665788999999999999999999877653 499999977 8999998888887654
Q ss_pred -ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhhHHHHHhhccccce-E
Q 000101 1077 -SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-R 1152 (2239)
Q Consensus 1077 -kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r-R 1152 (2239)
.+-.|.|.... .. ...|+|+||+++.+. ...+...+|++||+|||||+....... .+..+...+ +
T Consensus 108 ~~~g~~~~~~~~-------~~--~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKE-------LE--PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILELLSAAYPR 176 (442)
T ss_pred cccceecCceec-------cC--CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHHhhhcccce
Confidence 34445554321 11 146999999999886 344555589999999999997544443 334445555 9
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh-
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR- 1231 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl- 1231 (2239)
|+|||||...+...+..++.++.|-++. ..
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~~vy~-------------------------------------------------~~~ 207 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGPIVYE-------------------------------------------------VSL 207 (442)
T ss_pred eeeccCceeecCCchhHHHHhcCCeEee-------------------------------------------------cCH
Confidence 9999999766544444444443322221 11
Q ss_pred Hhhhh-cCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1232 VEDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1232 KkDVe-kdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+..+. +.|.+.....+++.++......|..........+.. ..........+
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~--------- 260 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA------------------RGTLRAENEAR--------- 260 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh------------------hhhhhHHHHHH---------
Confidence 11111 357788888899989988888886443221100000 00000000111
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
........|+..+..++.... .+.++||||..+.+.+.|...|...|+ +..++|.++..+|..+++.|+
T Consensus 261 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 261 ---------RIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred ---------HHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 112233457888888888766 789999999999999999999998888 889999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcc-cCCcceEEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYM 1451 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhR-IGQkKeV~VyrL 1451 (2239)
.++ ..+|++++++++|+|+++|+++|+..+.-++..+.|++||+.| ...++.+.++.+
T Consensus 330 ~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~ 388 (442)
T COG1061 330 TGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDY 388 (442)
T ss_pred cCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEE
Confidence 755 3479999999999999999999999999999999999999999 555666555554
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=291.53 Aligned_cols=316 Identities=22% Similarity=0.305 Sum_probs=233.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~------k~~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.+.|.|..+...++. +..+|...+||+|||+.++..+...+.. ++....+||++|+. |..|...++.++
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 577888888777776 7888999999999999998876655543 22333489999998 788899999999
Q ss_pred CCCCc--eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhc
Q 000101 1073 LPSVS--CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR 1146 (2239)
Q Consensus 1073 aPslk--vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~ 1146 (2239)
...+. .++.+|+.....++... ....+|+|+|+++++... ..+.-.+..|+|+|||++|.. ....+.++|..
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~ 266 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQ 266 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHh
Confidence 87654 55656655555444332 347899999999998764 355566889999999999954 67788999998
Q ss_pred c-ccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1147 Y-RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1147 L-ka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
+ ++.+ .|+.||| |. .
T Consensus 267 i~~~~rQtlm~saT---------wp--------------~---------------------------------------- 283 (519)
T KOG0331|consen 267 IPRPDRQTLMFSAT---------WP--------------K---------------------------------------- 283 (519)
T ss_pred cCCCcccEEEEeee---------cc--------------H----------------------------------------
Confidence 8 5554 5667888 10 0
Q ss_pred hHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
-+|.+..++.. .|-.+. +.... ....+..+.++-..|
T Consensus 284 --~v~~lA~~fl~-~~~~i~-ig~~~---------------------------------------~~~a~~~i~qive~~ 320 (519)
T KOG0331|consen 284 --EVRQLAEDFLN-NPIQIN-VGNKK---------------------------------------ELKANHNIRQIVEVC 320 (519)
T ss_pred --HHHHHHHHHhc-CceEEE-ecchh---------------------------------------hhhhhcchhhhhhhc
Confidence 01111112111 111111 11000 000111223333333
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk-atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
+ ...|...|..+|.++. ..+.||||||.+...++.|+..|+..++++..|||..++.+|.
T Consensus 321 ~-------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~ 381 (519)
T KOG0331|consen 321 D-------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERD 381 (519)
T ss_pred C-------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHH
Confidence 2 1348888888888876 4456999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.+|+.|++++.. ||++|+++++|||++++|+||+||+|-|...|+||+||++|.|++-....|
T Consensus 382 ~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 382 WVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred HHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 999999976655 899999999999999999999999999999999999999999988655443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=288.86 Aligned_cols=311 Identities=18% Similarity=0.250 Sum_probs=220.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
++.|+|.+++..++. +.+.|+..+||+|||++++..+...+........+|||||+. |+.||..++.+++ +.
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 688999999998875 778999999999999988777766654333334689999987 8889999988875 46
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka~- 1150 (2239)
+.+..++|+.....+.. ......+|+|+|++.+..... .+.-.++++|||||||++.+. ...+...+..++..
T Consensus 102 ~~v~~~~Gg~~~~~~~~--~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~ 179 (460)
T PRK11776 102 IKVLTLCGGVPMGPQID--SLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARR 179 (460)
T ss_pred cEEEEEECCCChHHHHH--HhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCccc
Confidence 77877887765443332 222578999999999986532 333447899999999998653 33455555555544
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..+++|||+-. ++-.+...+ +..|.... -
T Consensus 180 q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i~---------------------------------~ 208 (460)
T PRK11776 180 QTLLFSATYPE----GIAAISQRF--------------QRDPVEVK---------------------------------V 208 (460)
T ss_pred EEEEEEecCcH----HHHHHHHHh--------------cCCCEEEE---------------------------------E
Confidence 46888999621 111111100 00000000 0
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
......+......+.+
T Consensus 209 ---~~~~~~~~i~~~~~~~------------------------------------------------------------- 224 (460)
T PRK11776 209 ---ESTHDLPAIEQRFYEV------------------------------------------------------------- 224 (460)
T ss_pred ---CcCCCCCCeeEEEEEe-------------------------------------------------------------
Confidence 0000000000011100
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
....|+..|..+|... ...++||||+....++.+.+.|...++.+..+||+++..+|..+++.|+
T Consensus 225 -------------~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 225 -------------SPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred -------------CcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0011455555555432 3568999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++... +||+|+++++|||++++++||+||.|.++..|.||+||++|.|....+.++
T Consensus 290 ~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 290 NRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred cCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 75544 799999999999999999999999999999999999999999987655444
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=294.33 Aligned_cols=316 Identities=20% Similarity=0.251 Sum_probs=218.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-----~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
++.|+|..++..++. +.+.|+..+||+|||++++..+...+... +....+|||||+. |+.||..++.+|.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 689999999988776 77889999999999999876554333221 1122479999987 8889999999987
Q ss_pred CC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhcc
Q 000101 1074 PS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1147 (2239)
Q Consensus 1074 Ps--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~L 1147 (2239)
.. +.+.+..|......+... .....+|||+|++.|..... .+...++.+|||||||++.+.. ..+.+.+..+
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~--l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~ 305 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYA--LRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 305 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHH--HHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC
Confidence 54 555555555444333222 23468999999999876532 2333468899999999997543 3445555556
Q ss_pred ccc-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1148 RCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1148 ka~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
... ..+++|||.- .++-.+...+... .++....
T Consensus 306 ~~~~q~l~~SAT~p----~~v~~l~~~l~~~-------------~~v~i~v----------------------------- 339 (545)
T PTZ00110 306 RPDRQTLMWSATWP----KEVQSLARDLCKE-------------EPVHVNV----------------------------- 339 (545)
T ss_pred CCCCeEEEEEeCCC----HHHHHHHHHHhcc-------------CCEEEEE-----------------------------
Confidence 443 4678899941 1111111000000 0000000
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
..+...........+.
T Consensus 340 ------g~~~l~~~~~i~q~~~---------------------------------------------------------- 355 (545)
T PTZ00110 340 ------GSLDLTACHNIKQEVF---------------------------------------------------------- 355 (545)
T ss_pred ------CCCccccCCCeeEEEE----------------------------------------------------------
Confidence 0000000000000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
.+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||+++.++|..++
T Consensus 356 ---------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 356 ---------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred ---------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 01112355666677776666788999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+.|+++... |||+|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+..|
T Consensus 421 ~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 421 NEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred HHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999975444 799999999999999999999999999999999999999999987665444
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=312.12 Aligned_cols=274 Identities=27% Similarity=0.415 Sum_probs=200.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHH---------------HhCCCCCeEEEechHHHHHHHHHHHHHCCCC-ceE
Q 000101 1016 YNNKLNGILADEMGLGKTVQVMALIAYLME---------------FKGNYGPHLIIVPNAVLVNWKSELHKWLPSV-SCI 1079 (2239)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lie---------------~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl-kvv 1079 (2239)
+..+..+++|||||+|||+..+++...-.. .....|.+|||||.+++.||..||.++++.. ++.
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 334556799999999999998887643210 0113478999999999999999999999876 999
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----------------------hhcccCCceEEEecccccccChh
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----------------------SKLSKVDWKYIIIDEAQRMKDRE 1137 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----------------------s~L~kikWd~VIIDEAHrIKN~~ 1137 (2239)
.|.|-...-. ........+|||||||+.|..+. +.|..+.|..||||||+-+....
T Consensus 451 ~Y~Girk~~~--~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFW--LSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhcc--cCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 9988543211 11134468999999999997651 23556689999999999999999
Q ss_pred hHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1138 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1138 SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
+..++.+..+++.++|+.||||+++ +.+|+.||+||.-..|+....|.+.+..++... ....
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------------a~~~ 590 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------------AKCE 590 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------------hhhh
Confidence 9999999999999999999999999 999999999999989999999988765544321 1233
Q ss_pred HHHHhhhhHHhhHhHhhhhc--CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHh------hhhcChhhHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR------RVQKNPIYQAKV 1289 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVek--dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~------~l~k~~~~~~k~ 1289 (2239)
.++.++...+.|+.+-+|+. .+|+..+.+....+++.+..+|+.....-........++. ..........-.
T Consensus 591 ~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 591 PLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred hHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 57778888899999988876 5788888888888888887777543111000000000000 001111222234
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 000101 1290 YKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1290 ~ksL~niImqLRKiCnHP~L 1309 (2239)
...+.+.+.+||++|+||.+
T Consensus 671 ~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 56778889999999999965
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=271.77 Aligned_cols=314 Identities=22% Similarity=0.236 Sum_probs=231.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.+-+.|.+++..++. +..+|.+.|||+|||+.++..|...+-..+..-.+||++|+. |..|....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 466789999988886 888999999999999999888776554455555679999998 66677777888854 57
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHhhccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~r 1151 (2239)
.+.+..|+.+...+..... .+++|+|+|++.|+++... |.-....++|+|||+++.| +.-.+.++|+.++..+
T Consensus 159 r~~~lvGG~~m~~q~~~L~--kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~er 236 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLS--KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRER 236 (476)
T ss_pred EEEEEecCchHHHHHHHhh--cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccc
Confidence 7888899888776655444 4889999999999987652 3344678999999999987 4567888888888776
Q ss_pred E-EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1152 R-LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1152 R-LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+ +|.|||-- .+. .+| .+. .++
T Consensus 237 qt~LfsATMt-~kv----------------------------------------------------~kL---~ra-sl~- 258 (476)
T KOG0330|consen 237 QTFLFSATMT-KKV----------------------------------------------------RKL---QRA-SLD- 258 (476)
T ss_pred eEEEEEeecc-hhh----------------------------------------------------HHH---Hhh-ccC-
Confidence 5 55598821 110 111 100 000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
-|.+ |.-+ ..|..+ ..|.+ -|++
T Consensus 259 --------~p~~------v~~s----~ky~tv-----------------------------------~~lkQ----~ylf 281 (476)
T KOG0330|consen 259 --------NPVK------VAVS----SKYQTV-----------------------------------DHLKQ----TYLF 281 (476)
T ss_pred --------CCeE------Eecc----chhcch-----------------------------------HHhhh----heEe
Confidence 1111 1100 011111 00110 0111
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.+ ..-|-..|..||.++. |..+||||+...+.+.+.-+|+..|+....|||.|++..|..+++.|+
T Consensus 282 v~------------~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk 347 (476)
T KOG0330|consen 282 VP------------GKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK 347 (476)
T ss_pred cc------------ccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHh
Confidence 11 1125566777887654 689999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
++.-+ +|++|++|++|||++.+|+||+||.|-+...|+||+||+.|.|.. -.++.|++
T Consensus 348 ~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrs--G~~ItlVt 405 (476)
T KOG0330|consen 348 AGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRS--GKAITLVT 405 (476)
T ss_pred ccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCC--cceEEEEe
Confidence 75444 899999999999999999999999999999999999999999944 34455544
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=282.18 Aligned_cols=307 Identities=19% Similarity=0.202 Sum_probs=218.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.++|+|.+++.-++. +.+.|+..+||+|||+.++..+.. ..+.+|||+|+. |+.+|...+..+ ++.+
T Consensus 11 ~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 11 SFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999998876 668999999999999887655432 245789999986 778888888765 4555
Q ss_pred EEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhh---hhc-ccCCceEEEecccccccChhh-------HHHHHhh
Q 000101 1079 IYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDR---SKL-SKVDWKYIIIDEAQRMKDRES-------VLARDLD 1145 (2239)
Q Consensus 1079 vvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L-~kikWd~VIIDEAHrIKN~~S-------KlskaLk 1145 (2239)
..+.+... .+..+...+..+.++|+++|++.+.... ..+ ...++.+|||||||++..... .+.....
T Consensus 79 ~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 158 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ 158 (470)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH
Confidence 55555433 3344455566678999999999986532 333 455789999999999865332 1222223
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
.++....++||||+-.....++...+++-.|.++.. .|.
T Consensus 159 ~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~----------------------------------- 197 (470)
T TIGR00614 159 KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD----------------------------------- 197 (470)
T ss_pred HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC-----------------------------------
Confidence 455566899999986655555555544433322210 000
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
-|.....+.. ..
T Consensus 198 -------------r~nl~~~v~~-~~------------------------------------------------------ 209 (470)
T TIGR00614 198 -------------RPNLYYEVRR-KT------------------------------------------------------ 209 (470)
T ss_pred -------------CCCcEEEEEe-CC------------------------------------------------------
Confidence 0000000000 00
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
...+..|..++.+ ...+.++||||.....++.+...|...|+.+..+||+++.++|..+
T Consensus 210 --------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i 268 (470)
T TIGR00614 210 --------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDV 268 (470)
T ss_pred --------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHH
Confidence 0011111112211 1246678999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++.|..+... +|++|.++|+|||++++++||+||+|.++..|.|++||++|.|....+.+|+-
T Consensus 269 ~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 269 HHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred HHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 9999975444 78999999999999999999999999999999999999999998877766653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=287.28 Aligned_cols=312 Identities=18% Similarity=0.222 Sum_probs=215.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-------~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+. |+.|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999998886 788999999999999998887665442211 134689999987 88899999999
Q ss_pred HCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccCh--hhHHHHHh
Q 000101 1072 WLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDL 1144 (2239)
Q Consensus 1072 waPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN~--~SKlskaL 1144 (2239)
|... +.+.+++|......+. ......++|||+|++.|..... .+....+.+|||||||++... ...+...+
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~--~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il 184 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR--ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLL 184 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH--HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHH
Confidence 8754 5566666765433221 1223468999999999976532 233446789999999998643 22333444
Q ss_pred hccc---cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1145 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1145 k~Lk---a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
..+. ....+++|||.- +.+.++ .. .++..|....
T Consensus 185 ~~lp~~~~~q~ll~SATl~-~~v~~l---~~--------------~~l~~p~~i~------------------------- 221 (572)
T PRK04537 185 RRMPERGTRQTLLFSATLS-HRVLEL---AY--------------EHMNEPEKLV------------------------- 221 (572)
T ss_pred HhcccccCceEEEEeCCcc-HHHHHH---HH--------------HHhcCCcEEE-------------------------
Confidence 4443 345788899941 111111 00 0010000000
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
+ +............+++.
T Consensus 222 ------v-----~~~~~~~~~i~q~~~~~--------------------------------------------------- 239 (572)
T PRK04537 222 ------V-----ETETITAARVRQRIYFP--------------------------------------------------- 239 (572)
T ss_pred ------e-----ccccccccceeEEEEec---------------------------------------------------
Confidence 0 00000000000000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ee 1381 (2239)
....|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..|||.++..+
T Consensus 240 ----------------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 240 ----------------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred ----------------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 001144444444432 34679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1382 RqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
|.++++.|+++... |||+|+++++|||++++++||+||.||++..|+|++||++|.|....+.+|
T Consensus 296 R~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 296 RESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred HHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 99999999975544 799999999999999999999999999999999999999999987665444
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=276.41 Aligned_cols=312 Identities=17% Similarity=0.189 Sum_probs=215.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k----~~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
+++++|.+++..++. +.+.|+...||+|||++++..++..+... .....+|||+|+. |+.||.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 688999999988875 67889999999999999877665544221 2234689999987 78888888888764
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhhccc
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1148 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lk 1148 (2239)
++.+..+.|+....... ......++|+|+|++.|.... ..+....+++|||||||++.... ..+...+..+.
T Consensus 99 ~~~~~v~~~~gg~~~~~~~--~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~ 176 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA--EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETR 176 (434)
T ss_pred cCCcEEEEEECCCCHHHHH--HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc
Confidence 46677777765443321 233457899999999987653 23344567899999999996532 33333333333
Q ss_pred c-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1149 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1149 a-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~-kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
. ...+++|||+-...+.+ |..++. .|...... +
T Consensus 177 ~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~~~~i~~~--------------------------~- 211 (434)
T PRK11192 177 WRKQTLLFSATLEGDAVQD------------------FAERLLNDPVEVEAE--------------------------P- 211 (434)
T ss_pred cccEEEEEEeecCHHHHHH------------------HHHHHccCCEEEEec--------------------------C-
Confidence 2 34688999963211111 111110 00000000 0
Q ss_pred HhhHhHhhhhcCCCCceEEEE-EeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVL-RCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV-~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
...........+ .+.
T Consensus 212 ---------~~~~~~~i~~~~~~~~------------------------------------------------------- 227 (434)
T PRK11192 212 ---------SRRERKKIHQWYYRAD------------------------------------------------------- 227 (434)
T ss_pred ---------CcccccCceEEEEEeC-------------------------------------------------------
Confidence 000000000000 000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
....|+.+|..++.. ....++||||+....++.|...|...|+.+..+||+++..+|..+
T Consensus 228 ------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~ 287 (434)
T PRK11192 228 ------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEA 287 (434)
T ss_pred ------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHH
Confidence 001245555555542 245799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++.|+++... +|++|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+.++
T Consensus 288 l~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 288 IKRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HHHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 9999975444 799999999999999999999999999999999999999999987665554
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=284.51 Aligned_cols=313 Identities=15% Similarity=0.152 Sum_probs=219.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
++.|+|.+++..++. +.+.|+...||+|||++++..+...+........+|||||+. |+.||..+|.+|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 677899999999999998776665554333445689999987 7889998888774 56
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lka~- 1150 (2239)
+.++.++|......++.. .....+|||+|++.+..... .+.-.++.+|||||||.|.+.. ..+...+..++..
T Consensus 104 i~v~~~~gG~~~~~q~~~--l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~ 181 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRA--LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181 (629)
T ss_pred ceEEEEECCcCHHHHHHH--hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCC
Confidence 777777776544333221 23468999999999986532 3444567899999999986533 3455566666544
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..+++|||.- ..+.++ .. .++..|....
T Consensus 182 q~llfSAT~p-~~i~~i---~~--------------~~l~~~~~i~---------------------------------- 209 (629)
T PRK11634 182 QTALFSATMP-EAIRRI---TR--------------RFMKEPQEVR---------------------------------- 209 (629)
T ss_pred eEEEEEccCC-hhHHHH---HH--------------HHcCCCeEEE----------------------------------
Confidence 4678899941 111110 00 0000000000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+... ....|......+
T Consensus 210 i~~~-~~~~~~i~q~~~--------------------------------------------------------------- 225 (629)
T PRK11634 210 IQSS-VTTRPDISQSYW--------------------------------------------------------------- 225 (629)
T ss_pred ccCc-cccCCceEEEEE---------------------------------------------------------------
Confidence 0000 000000000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.+...-|+..|.++|.. ....++||||.....++.|..+|...|+.+..+||.++..+|..++++|+
T Consensus 226 -----------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr 292 (629)
T PRK11634 226 -----------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 (629)
T ss_pred -----------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh
Confidence 00011255555555543 23468999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+... |||+|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.++.
T Consensus 293 ~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v 349 (629)
T PRK11634 293 DGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 349 (629)
T ss_pred CCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEe
Confidence 75544 7999999999999999999999999999999999999999999876555554
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=279.96 Aligned_cols=312 Identities=20% Similarity=0.251 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~------~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.+.|+|.+++..++. +.+.|+...||+|||++++..+...+.... ....+|||||+. |+.||..++..|
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999988775 778999999999999998887766653321 112589999987 888999999988
Q ss_pred CCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhhc
Q 000101 1073 LPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1146 (2239)
Q Consensus 1073 aPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~ 1146 (2239)
+.. +.++.+.|......+.. .....++|+|+|++.|.... ..+...++++|||||||++.... ..+...+..
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMM--KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHH--HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHh
Confidence 653 55566666654433322 22357899999999997643 23334578899999999986533 334445555
Q ss_pred cccc-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
+... ..+++|||.- +.+.++ ...+ +..|....
T Consensus 177 l~~~~q~l~~SAT~~-~~~~~l---~~~~--------------~~~~~~i~----------------------------- 209 (456)
T PRK10590 177 LPAKRQNLLFSATFS-DDIKAL---AEKL--------------LHNPLEIE----------------------------- 209 (456)
T ss_pred CCccCeEEEEeCCCc-HHHHHH---HHHH--------------cCCCeEEE-----------------------------
Confidence 5444 4788999952 111111 1000 00010000
Q ss_pred HHhhHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1226 FMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
+.+ . ........ .+..+.
T Consensus 210 -~~~---~---~~~~~~i~~~~~~~~------------------------------------------------------ 228 (456)
T PRK10590 210 -VAR---R---NTASEQVTQHVHFVD------------------------------------------------------ 228 (456)
T ss_pred -Eec---c---cccccceeEEEEEcC------------------------------------------------------
Confidence 000 0 00000000 010000
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
...|..+|..++.. ...+++||||+....++.|.+.|...++.+..+||.++.++|..
T Consensus 229 --------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~ 286 (456)
T PRK10590 229 --------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286 (456)
T ss_pred --------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Confidence 00122333333322 23468999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++.|+++... |||+|+++++|||++++++||+||+|+++..|+|++||++|.|.+..+.++.
T Consensus 287 ~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 287 ALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 99999975444 7999999999999999999999999999999999999999999877655543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=277.82 Aligned_cols=311 Identities=16% Similarity=0.194 Sum_probs=213.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-------~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.+.|.|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 678999999988775 778899999999999998776655442211 124589999987 78899998888
Q ss_pred HCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh--hHHHHHhh
Q 000101 1072 WLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1145 (2239)
Q Consensus 1072 waP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~--SKlskaLk 1145 (2239)
+.. ++.+.+++|+........ .....++|+|+|++.+.... ..+...++.+|||||||++.+.. ..+...+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLK--VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFR 183 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHH--HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHH
Confidence 764 466777777644332221 22346899999999997653 23444578999999999986533 23333444
Q ss_pred cccc---ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1146 RYRC---QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1146 ~Lka---~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.+.. ...+++|||.-. .+.++. ..++..|....
T Consensus 184 ~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~~p~~i~-------------------------- 219 (423)
T PRK04837 184 RMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMNNPEYVE-------------------------- 219 (423)
T ss_pred hCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCCCCEEEE--------------------------
Confidence 4432 235788999521 111110 00000000000
Q ss_pred hhhHHhhHhHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
+ ... ....... ...+++
T Consensus 220 -----v---~~~--~~~~~~i~~~~~~~---------------------------------------------------- 237 (423)
T PRK04837 220 -----V---EPE--QKTGHRIKEELFYP---------------------------------------------------- 237 (423)
T ss_pred -----E---cCC--CcCCCceeEEEEeC----------------------------------------------------
Confidence 0 000 0000000 000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHH
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1381 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ee 1381 (2239)
....|+.+|..++.. ....++||||+....++.|..+|...|+.+..+||+++.++
T Consensus 238 ----------------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 238 ----------------------SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ----------------------CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 011245555555543 23579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1382 RqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
|..+++.|+.++.. +|++|+++++|||++++++||+||+|+++..|+||+||++|.|+...+..|
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99999999976554 799999999999999999999999999999999999999999977655433
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=282.81 Aligned_cols=313 Identities=18% Similarity=0.215 Sum_probs=213.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~S-LLsQW~~Ef~ 1070 (2239)
..+.|+|..++..++. +.+.|+..+||+|||+.++..+...+... .....+|||+|+. |+.|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 3789999999998875 77899999999999999887665433211 1234689999987 7788888888
Q ss_pred HHCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHh
Q 000101 1071 KWLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDL 1144 (2239)
Q Consensus 1071 KwaPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaL 1144 (2239)
.+... +.+..+.|+.....+.. .+ ...++|+|+|++.|..... .+...+..+|||||||+|... ...+...+
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~-~l-~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~ 295 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY-RI-QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIF 295 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH-Hh-cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHH
Confidence 88654 34455555443333222 12 3468999999999865432 333446789999999999653 33455566
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
..+.....+++|||.- +.+.. +..++.....
T Consensus 296 ~~l~~~q~l~~SATl~-~~v~~------------------l~~~~~~~~~------------------------------ 326 (518)
T PLN00206 296 QALSQPQVLLFSATVS-PEVEK------------------FASSLAKDII------------------------------ 326 (518)
T ss_pred HhCCCCcEEEEEeeCC-HHHHH------------------HHHHhCCCCE------------------------------
Confidence 6666677899999952 11111 1111100000
Q ss_pred hHHhhHhHhhhhcCCCCc--eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1225 PFMLRRRVEDVEGSLPPK--VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K--~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
.+.. . ....+.. ...+++|.
T Consensus 327 --~i~~--~--~~~~~~~~v~q~~~~~~---------------------------------------------------- 348 (518)
T PLN00206 327 --LISI--G--NPNRPNKAVKQLAIWVE---------------------------------------------------- 348 (518)
T ss_pred --EEEe--C--CCCCCCcceeEEEEecc----------------------------------------------------
Confidence 0000 0 0000000 01111111
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH-cCCeEEeecCCCCHHH
Q 000101 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLED 1381 (2239)
Q Consensus 1303 iCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~-rGiky~RLDGsts~ee 1381 (2239)
...|...|..+|........++||||+....++.|...|.. .|+.+..+||+++.++
T Consensus 349 ----------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 349 ----------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKE 406 (518)
T ss_pred ----------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHH
Confidence 00122333344443333346899999999999999999975 6999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1382 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1382 RqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
|..+++.|+++... +|++|+++++|||++.+++||+||+|.+...|+||+||++|.|....+.+|
T Consensus 407 R~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 407 RREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 99999999975544 799999999999999999999999999999999999999999976555443
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=275.14 Aligned_cols=313 Identities=20% Similarity=0.261 Sum_probs=214.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-------~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.++++|.+++..++. +.+.|++..||+|||+.++..+...+.... ....+|||+|+. |+.||.+++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999987765 788999999999999998776665443222 134689999987 88889999888
Q ss_pred HCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhh
Q 000101 1072 WLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1145 (2239)
Q Consensus 1072 waP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk 1145 (2239)
++. ++.+..++|+.+..... ..+....++|+|+|+++|..... .+.-.++++|||||+|++.+.. ..+.+.+.
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~-~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~ 263 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQL-KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIR 263 (475)
T ss_pred hhccCCCEEEEEEccCChHHHH-HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHH
Confidence 864 45667777765433322 23444578999999999975432 2223367899999999996533 23444444
Q ss_pred ccc---cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1146 RYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1146 ~Lk---a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.+. ....+++|||.. +++.++ .. .|...|....
T Consensus 264 ~~~~~~~~q~i~~SAT~~-~~~~~~---~~--------------~~~~~~~~v~-------------------------- 299 (475)
T PRK01297 264 QTPRKEERQTLLFSATFT-DDVMNL---AK--------------QWTTDPAIVE-------------------------- 299 (475)
T ss_pred hCCCCCCceEEEEEeecC-HHHHHH---HH--------------HhccCCEEEE--------------------------
Confidence 442 245788999942 111111 10 0010000000
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
-....+ ........+++
T Consensus 300 -------~~~~~~---~~~~~~~~~~~----------------------------------------------------- 316 (475)
T PRK01297 300 -------IEPENV---ASDTVEQHVYA----------------------------------------------------- 316 (475)
T ss_pred -------eccCcC---CCCcccEEEEE-----------------------------------------------------
Confidence 000000 00000000000
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000101 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382 (2239)
Q Consensus 1303 iCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeR 1382 (2239)
+..+.|..+|..++.. ....++||||+....++.|..+|...|+.+..++|.++.++|
T Consensus 317 --------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 374 (475)
T PRK01297 317 --------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374 (475)
T ss_pred --------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 0011244444444432 234699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1383 qeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.++++.|++++.. +|++|+++++|||++++|+||+||.|++...|.|++||++|.|+...+.+|
T Consensus 375 ~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 375 IKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred HHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 9999999975544 789999999999999999999999999999999999999999987654443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=275.87 Aligned_cols=314 Identities=22% Similarity=0.304 Sum_probs=226.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--hCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--KGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~--k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
...|.|..++..++. +...|....||+|||+.++..+...+.. .....++||++|+. |..|..+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 678999999988886 6788999999999999998888777652 22222389999998 77888888888865
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccCh--hhHHHHHhhcccc
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC 1149 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka 1149 (2239)
.+.+++++|+.....+. ..+.. ..+|||+|+++++... ..|...+..++|+|||++|.+. ...+...+..++.
T Consensus 127 ~~~~~~~i~GG~~~~~q~-~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~ 204 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQI-EALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP 204 (513)
T ss_pred CCccEEEEECCCCHHHHH-HHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc
Confidence 56777888877766666 44444 5999999999998664 3466668899999999999764 4456666667665
Q ss_pred ce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1150 QR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1150 ~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
.+ .++.|||--. . ++.+..- |.. .|..+
T Consensus 205 ~~qtllfSAT~~~-~---i~~l~~~---------------~l~--------------------------------~p~~i 233 (513)
T COG0513 205 DRQTLLFSATMPD-D---IRELARR---------------YLN--------------------------------DPVEI 233 (513)
T ss_pred ccEEEEEecCCCH-H---HHHHHHH---------------Hcc--------------------------------CCcEE
Confidence 44 5677999311 1 1111000 000 01000
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
..-........+.....++.|.-
T Consensus 234 ~v~~~~~~~~~~~i~q~~~~v~~--------------------------------------------------------- 256 (513)
T COG0513 234 EVSVEKLERTLKKIKQFYLEVES--------------------------------------------------------- 256 (513)
T ss_pred EEccccccccccCceEEEEEeCC---------------------------------------------------------
Confidence 00000000000011111111100
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~ 1388 (2239)
...|+.+|..+|.... ..++||||.....++.|...|..+|+++..|||++++++|.++++.
T Consensus 257 ----------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 257 ----------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred ----------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 0137777777776543 3379999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
|+++... +||+|+++++|||++.+++||+||.|.++..|+||+||++|.|.+.....
T Consensus 319 F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~ 375 (513)
T COG0513 319 FKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375 (513)
T ss_pred HHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEE
Confidence 9975555 79999999999999999999999999999999999999999996654433
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=267.47 Aligned_cols=420 Identities=20% Similarity=0.219 Sum_probs=250.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..||+||.+-++-.+ +.|.|+|..||+|||.+|+.++...++.... +.++++||+. |+.|....|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 489999999998777 6789999999999999998888888875554 8999999987 77777788888774444
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhccc---CCceEEEecccccc-cC-hhhHHHHHhhcc--ccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRM-KD-RESVLARDLDRY--RCQ 1150 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrI-KN-~~SKlskaLk~L--ka~ 1150 (2239)
+....|+...+.... ......+|+|.|++.+.++...-.. ..|.+||||||||. +| +.+.+.+.+... ...
T Consensus 135 ~T~~l~~~~~~~~r~--~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRG--EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ceeeccCccCCCchh--hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 444444422222111 2234678999999999988543222 35999999999998 44 333444444433 233
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCCh--HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~--k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
+.|+|||||- +++....+.++-|... +.-+ ......+.. .........+ +.. ....+..+|..+++|++.
T Consensus 213 qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~----lr~~~~i~v~-~~~-~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 213 QILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE----LREHVQIPVD-LSL-CERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred cEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH----HhccCcccCc-HHH-hhhhhhhhHHHHHHHHHH
Confidence 7899999997 7777766665555443 2111 111111100 0000001111 111 112345677888888765
Q ss_pred hHhHhhhhc------------------CCCCceEEEEEeccCHHHHHHHHH-HHHhcCcc-cCchhHHhhhhcChhhH--
Q 000101 1229 RRRVEDVEG------------------SLPPKVSIVLRCRMSAIQSAIYDW-IKATGTLR-VDPEDEKRRVQKNPIYQ-- 1286 (2239)
Q Consensus 1229 RRlKkDVek------------------dLP~K~e~VV~c~MS~~Qr~LY~~-I~~~~~l~-l~~~~ek~~l~k~~~~~-- 1286 (2239)
+-....+.. ..|........| +.......|.. +.....++ +...+.-..........
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 544332211 011111111111 11111111110 01111110 00000000000000000
Q ss_pred -HHHH-HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh--cCCeEEEEEccHHHHHHHHHH
Q 000101 1287 -AKVY-KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEY 1362 (2239)
Q Consensus 1287 -~k~~-ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLka--tGhKVLIFSQ~t~~LDILed~ 1362 (2239)
.... ..+...++.+..-|.|-.... ....+|++.|.++|.+... ...|+|||+.++..++.|..+
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~-----------~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~ 432 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDP-----------PKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKW 432 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCC-----------CccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHH
Confidence 0000 001111111111111111110 1235799999999988764 357999999999999999999
Q ss_pred HH-H--cCCeEEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHH
Q 000101 1363 LQ-W--RQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1431 (2239)
Q Consensus 1363 L~-~--rGiky~RLDG--------sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dl 1431 (2239)
|. . .|++...+-| +|++.+..++|++|++++.+ +|++|.+|.+|||+..||.||.||..-||...+
T Consensus 433 l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmI 509 (746)
T KOG0354|consen 433 LLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMV 509 (746)
T ss_pred HHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHH
Confidence 87 2 2455555555 68889999999999986655 799999999999999999999999999999999
Q ss_pred HhhhhhcccCCcceEEEEE
Q 000101 1432 QAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~Vyr 1450 (2239)
||+|| +|.-..+-|.++.
T Consensus 510 QrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 510 QRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHhcc-ccccCCeEEEEEc
Confidence 99999 8876666665554
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=263.74 Aligned_cols=312 Identities=19% Similarity=0.241 Sum_probs=209.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
.+.|+|..++..++. +.+.|+..+||+|||++++..+...+........+|||+|+. |+.||...+..++.. +
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 778899999999999988777666654333445789999977 777788777777643 4
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhcccc-ce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-QR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka-~r 1151 (2239)
.+..+.|....+... ... ....+|+|+|++.+.... ..+...++++|||||||++.. ....+...+..+.. ..
T Consensus 126 ~~~~~~g~~~~~~~~-~~~-~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 126 RCHACVGGTVVRDDI-NKL-KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQ 203 (401)
T ss_pred eEEEEECCcCHHHHH-HHH-cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcE
Confidence 445556655443332 112 235789999999886542 233345789999999999854 33445556666643 45
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.+++|||+- +.+.++. .. ++..|.... +.
T Consensus 204 ~i~~SAT~~-~~~~~~~---~~--------------~~~~~~~~~-------------------------------~~-- 232 (401)
T PTZ00424 204 VALFSATMP-NEILELT---TK--------------FMRDPKRIL-------------------------------VK-- 232 (401)
T ss_pred EEEEEecCC-HHHHHHH---HH--------------HcCCCEEEE-------------------------------eC--
Confidence 788999952 1111110 00 000000000 00
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
...+ .+.......+.+. ..
T Consensus 233 ~~~~--~~~~~~~~~~~~~--~~--------------------------------------------------------- 251 (401)
T PTZ00424 233 KDEL--TLEGIRQFYVAVE--KE--------------------------------------------------------- 251 (401)
T ss_pred CCCc--ccCCceEEEEecC--hH---------------------------------------------------------
Confidence 0000 0000000011100 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
..++..+..++.. ....++||||.....++.+...|...++.+..+||+++.++|..+++.|++
T Consensus 252 --------------~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 252 --------------EWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred --------------HHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 0011222222221 134689999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
+... +|++|+++++|||++++++||+||++.+...|.|++||++|.|....+.+
T Consensus 316 g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 316 GSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAIN 369 (401)
T ss_pred CCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEE
Confidence 5544 79999999999999999999999999999999999999999996654433
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=277.59 Aligned_cols=304 Identities=18% Similarity=0.177 Sum_probs=214.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.++|+|.+++.-++. +.++|+..+||+|||++++..+.. ..+.+|||+|+. |+.+|...|... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~------~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALV------LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHH------cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999998775 778999999999999887655432 135789999976 778888888765 3555
Q ss_pred EEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh-------HHHHHhhcc
Q 000101 1079 IYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRY 1147 (2239)
Q Consensus 1079 vvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S-------KlskaLk~L 1147 (2239)
.++.+... ........+..+.++++++|++.+... ...+...++.+|||||||.+..... .+......+
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~ 172 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (607)
T ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC
Confidence 55544432 223344445667889999999998743 3445556789999999999865332 222222334
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.....++||||+-.....+++..+.+..|.++.. .|.
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~------------------------------------- 209 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD------------------------------------- 209 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC-------------------------------------
Confidence 4556899999986555555555444332222100 000
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.|.....++.
T Consensus 210 -----------r~nl~~~v~~----------------------------------------------------------- 219 (607)
T PRK11057 210 -----------RPNIRYTLVE----------------------------------------------------------- 219 (607)
T ss_pred -----------CCcceeeeee-----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
...++..|..++. ...+.++||||..+..++.+...|...|+.+..+||+++.++|.++++
T Consensus 220 -----------------~~~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 220 -----------------KFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred -----------------ccchHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 0001111112222 134678999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.|..+... +|++|.++|+|||++++++||+||+|.+...|.|++||++|.|....+.+++
T Consensus 281 ~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 281 AFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred HHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 99875444 7899999999999999999999999999999999999999999876655543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=273.43 Aligned_cols=303 Identities=20% Similarity=0.201 Sum_probs=218.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
++||+|.+++.-++. +.+.|++..||.|||+.+...+. + ..+.+|||+|+. |+.++...+... ++.+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 799999999988875 67899999999999998865443 2 245789999965 788898888875 4566
Q ss_pred EEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh-------HHHHHhhcc
Q 000101 1079 IYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRY 1147 (2239)
Q Consensus 1079 vvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S-------KlskaLk~L 1147 (2239)
..+.+.. .++......+..+..+|+++|++.+... ...+...++.+|||||||.+..... .+......+
T Consensus 81 ~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~ 160 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF 160 (591)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC
Confidence 6666553 3334445556667899999999998643 3456667899999999999854321 233333445
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.....++||||+-.....+++..+.+-.+..|.. .|.
T Consensus 161 ~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~------------------------------------- 197 (591)
T TIGR01389 161 PQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD------------------------------------- 197 (591)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC-------------------------------------
Confidence 4555899999986555555554443322211100 000
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.|.....++.
T Consensus 198 -----------r~nl~~~v~~----------------------------------------------------------- 207 (591)
T TIGR01389 198 -----------RPNLRFSVVK----------------------------------------------------------- 207 (591)
T ss_pred -----------CCCcEEEEEe-----------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
...+...|..+|... .+.++||||.....++.|.++|...|+.+..+||+++.++|..+++
T Consensus 208 -----------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~ 268 (591)
T TIGR01389 208 -----------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQE 268 (591)
T ss_pred -----------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH
Confidence 001222222333221 2678999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.|..+... +|++|.++|.|||++++++||+||+|+|...|.|++||++|.|....+.++
T Consensus 269 ~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 269 DFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred HHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEe
Confidence 99875443 799999999999999999999999999999999999999999977666544
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=274.87 Aligned_cols=307 Identities=17% Similarity=0.156 Sum_probs=210.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..+||+|.++|..++. +.++|+...||.|||+.+...++. ..+.+|||+|+. |+.++...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 4799999999998876 788999999999999988766542 136799999976 66656666554 2566
Q ss_pred eEEEecchh--hHHHHHHHHhh--cCccEEEEehhHHHHh---hhhc---c-cCCceEEEecccccccChhh------H-
Q 000101 1078 CIYYVGAKD--QRSRLFSQVAA--LKFNVLVTTYEFIMYD---RSKL---S-KVDWKYIIIDEAQRMKDRES------V- 1139 (2239)
Q Consensus 1078 vvvy~Gskd--~Rk~l~~~i~~--~kfdVVITTYE~L~kD---~s~L---~-kikWd~VIIDEAHrIKN~~S------K- 1139 (2239)
...+.++.. .....+..+.. +.++||++|++.+... ...+ . ...+.+|||||||.+..... .
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 666665533 23333333333 6789999999998632 1222 1 23478999999999865332 1
Q ss_pred HHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000101 1140 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1219 (2239)
Q Consensus 1140 lskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RL 1219 (2239)
+......+....+++||||.-.....++...|.+..+.+|. ..|..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~R---------------------------- 652 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFNR---------------------------- 652 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccCc----------------------------
Confidence 11222345556688999997655555555544433222211 00000
Q ss_pred HHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1220 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1220 hklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
|.....++. . ...
T Consensus 653 --------------------pNL~y~Vv~-k----~kk------------------------------------------ 665 (1195)
T PLN03137 653 --------------------PNLWYSVVP-K----TKK------------------------------------------ 665 (1195)
T ss_pred --------------------cceEEEEec-c----chh------------------------------------------
Confidence 000000000 0 000
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ 1379 (2239)
.+..|.+++.. ...+...||||..+..++.|..+|...|+.+..+||+++.
T Consensus 666 ----------------------------~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ 716 (1195)
T PLN03137 666 ----------------------------CLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDP 716 (1195)
T ss_pred ----------------------------HHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCH
Confidence 00111111111 0124578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++|..++++|..++.. |||+|.++|+|||++++++||+||.|.+...|.|++|||+|.|....+.+|+
T Consensus 717 eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 717 AQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999975544 7899999999999999999999999999999999999999999887776665
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=260.26 Aligned_cols=307 Identities=17% Similarity=0.240 Sum_probs=207.9
Q ss_pred CCChHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP- 1074 (2239)
.+|.++|.+++..++.-... ..+.||..+||+|||++++..+...+. ....+||++|+. |..||..+|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 37999999999999875432 246799999999999998776666554 235799999987 67899999999987
Q ss_pred -CCceEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc---
Q 000101 1075 -SVSCIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR--- 1148 (2239)
Q Consensus 1075 -slkvvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk--- 1148 (2239)
++.+.+++|+.. .+......+..+.++|+|+|+..+.... .-.+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~~~ 385 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQGGF 385 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhcccCC
Confidence 478888888643 3444555667778999999999886432 2246789999999997421 1112222222
Q ss_pred cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1149 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
..+.|+|||||+...+. +..+ +. +.
T Consensus 386 ~~~~l~~SATp~prtl~----l~~~------~~-------l~-------------------------------------- 410 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLA----LTVY------GD-------LD-------------------------------------- 410 (630)
T ss_pred CCCEEEEeCCCCcHHHH----HHhc------CC-------cc--------------------------------------
Confidence 46789999999754321 1000 00 00
Q ss_pred hHhHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1229 RRRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
..+...+|... .....+.-..
T Consensus 411 ----~~~i~~~p~~r~~i~~~~~~~~~----------------------------------------------------- 433 (630)
T TIGR00643 411 ----TSIIDELPPGRKPITTVLIKHDE----------------------------------------------------- 433 (630)
T ss_pred ----eeeeccCCCCCCceEEEEeCcch-----------------------------------------------------
Confidence 00001122110 0000100000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccH--------HHHHHHHHHHHH--cCCeEEeecCC
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDGT 1376 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t--------~~LDILed~L~~--rGiky~RLDGs 1376 (2239)
+ ..+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||.
T Consensus 434 ---------------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~ 491 (630)
T TIGR00643 434 ---------------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGR 491 (630)
T ss_pred ---------------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 0 111112222234578888888654 233444455543 47889999999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1377 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1377 ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++.++|..++++|.+++.. +|++|.+.++|||++++++||++|.+. +...+.|+.||++|-|.+..|.++.
T Consensus 492 m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999975554 799999999999999999999999985 6788999999999999876665554
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=270.94 Aligned_cols=359 Identities=18% Similarity=0.187 Sum_probs=212.4
Q ss_pred CCChHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
..||+||.+++..+...+. ...++||++.||+|||+++++++..++. .+..+++|||||.. |+.||..+|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 4799999999988876554 3467899999999999999999888775 34457899999965 9999999999874321
Q ss_pred c-eE--EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-------hcccCCceEEEecccccccCh----------
Q 000101 1077 S-CI--YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDR---------- 1136 (2239)
Q Consensus 1077 k-vv--vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrIKN~---------- 1136 (2239)
. .+ +|.. . .+..........|+|+|+.++.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~~i-~----~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 491 DQTFASIYDI-K----GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred ccchhhhhch-h----hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 1 11 1211 1 11111223457899999999876421 123357899999999996310
Q ss_pred -------hhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1137 -------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1137 -------~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
.++..+.|..|. ..+|+|||||..++ + ..|+.|+....
T Consensus 566 ~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----~------------------~~FG~pv~~Ys------------ 610 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----T------------------EIFGEPVYTYS------------ 610 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----h------------------HHhCCeeEEee------------
Confidence 123333444343 58899999997432 1 12222322110
Q ss_pred HHHHHHHHHHHHhh-hhHHhhHhHhhhhcCCCCceEEEEE----eccC-HHHHHHHHHHHHhcC-cccCchhHHhhhhcC
Q 000101 1210 EKKVIIIHRLHQIL-EPFMLRRRVEDVEGSLPPKVSIVLR----CRMS-AIQSAIYDWIKATGT-LRVDPEDEKRRVQKN 1282 (2239)
Q Consensus 1210 ee~~lii~RLhklL-rPFmLRRlKkDVekdLP~K~e~VV~----c~MS-~~Qr~LY~~I~~~~~-l~l~~~~ek~~l~k~ 1282 (2239)
+...+ ..+++. ..|+....... +... ..+...|+....... ..+. ++.
T Consensus 611 ---------l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~--d~~------ 665 (1123)
T PRK11448 611 ---------YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE--DEV------ 665 (1123)
T ss_pred ---------HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc--HHH------
Confidence 00000 001100 00111111100 0000 011111211100000 0000 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHH-HHHHHHHHHHh-cCCeEEEEEccHHHHHHHH
Q 000101 1283 PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQR-TGHRVLLFSTMTKLLDILE 1360 (2239)
Q Consensus 1283 ~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLe-lLdrIL~kLka-tGhKVLIFSQ~t~~LDILe 1360 (2239)
.+ ....+. +.+. . . .... ++..++..+.. .+.|+||||....+++.|.
T Consensus 666 -~~---~~~~~~------~~vi-~------------------~-~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 666 -DF---EVEDFN------RRVI-T------------------E-SFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred -hh---hHHHHH------HHHh-h------------------H-HHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 00 000000 0000 0 0 0000 11222222211 2369999999999999888
Q ss_pred HHHHHc------CC---eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHH
Q 000101 1361 EYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1431 (2239)
Q Consensus 1361 d~L~~r------Gi---ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dl 1431 (2239)
+.|... ++ .+..++|+++ ++.+++++|.+ ..+..||++++..++|+|++.+++||+++++-++..|.
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 877643 22 3567999985 57889999986 34457899999999999999999999999999999999
Q ss_pred HhhhhhcccCC---cceEEEEEEehhhhh
Q 000101 1432 QAVARAHRIGQ---KREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1432 QAiGRAhRIGQ---kKeV~VyrLvaVEEk 1457 (2239)
|++||+.|+.- |..+.||.++.+.+.
T Consensus 792 QmIGRgtR~~~~~~K~~f~I~D~vg~~~~ 820 (1123)
T PRK11448 792 QMLGRATRLCPEIGKTHFRIFDAVDIYEA 820 (1123)
T ss_pred HHHhhhccCCccCCCceEEEEehHHHHHh
Confidence 99999999854 667889988775443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=263.81 Aligned_cols=305 Identities=16% Similarity=0.206 Sum_probs=211.5
Q ss_pred CCChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.++.|+|..++..++.-.... .+.|++.+||+|||++++..+...+.. ...+||+||+. |+.|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 468999999999998754432 467999999999999887666554432 25799999987 778899999998865
Q ss_pred --CceEEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-cc
Q 000101 1076 --VSCIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk-a~ 1150 (2239)
+++.++.|.. .+++.....+..+..+|||+|+..+.++ +.-.+..+|||||+|++. ......|..+. ..
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfg---v~~~~~L~~~~~~~ 600 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFG---VKQKEKLKELRTSV 600 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccc---hhHHHHHHhcCCCC
Confidence 4555565543 3455556666677899999999765432 222357899999999973 23344555554 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..|+|||||+...+... +..+.++.++.
T Consensus 601 ~vL~~SATpiprtl~~~--l~g~~d~s~I~-------------------------------------------------- 628 (926)
T TIGR00580 601 DVLTLSATPIPRTLHMS--MSGIRDLSIIA-------------------------------------------------- 628 (926)
T ss_pred CEEEEecCCCHHHHHHH--HhcCCCcEEEe--------------------------------------------------
Confidence 68999999965433211 11111110000
Q ss_pred hHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1231 RVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1231 lKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
..|... .....+..+.
T Consensus 629 -------~~p~~R~~V~t~v~~~~~------------------------------------------------------- 646 (926)
T TIGR00580 629 -------TPPEDRLPVRTFVMEYDP------------------------------------------------------- 646 (926)
T ss_pred -------cCCCCccceEEEEEecCH-------------------------------------------------------
Confidence 000000 0000000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL 1386 (2239)
..+...++..+ ..+.+|+|||+.+..++.+.+.|... ++++..+||.|+.++|.+++
T Consensus 647 --------------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im 705 (926)
T TIGR00580 647 --------------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVM 705 (926)
T ss_pred --------------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 00011112222 24789999999999999999999874 78999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+|.+++.+ +||||++.++|||++++++||++|.+ +....+.|+.||++|.|.+..|.++.
T Consensus 706 ~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 706 LEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 999976555 79999999999999999999999996 46678999999999999776665543
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=257.95 Aligned_cols=306 Identities=17% Similarity=0.214 Sum_probs=208.2
Q ss_pred CCChHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+|.++|..++..+..-... ..+.||..+||+|||+.++..+...+. ....+||++|+. |..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37999999999988875432 246799999999999998877765543 234799999987 778899999999865
Q ss_pred --CceEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccc
Q 000101 1076 --VSCIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~ 1150 (2239)
+.+.+++|+.. .+......+..+..+|+|+|+..+.... .-.+..+|||||+|++.- .....+... ...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~ 410 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFGV---EQRLALREKGENP 410 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhhH---HHHHHHHhcCCCC
Confidence 67788888754 4555566677778999999998875432 223678999999999832 222233322 346
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+.|+|||||+...+. +..+ +. +..
T Consensus 411 ~iL~~SATp~prtl~----~~~~------g~-----------------------------------------~~~----- 434 (681)
T PRK10917 411 HVLVMTATPIPRTLA----MTAY------GD-----------------------------------------LDV----- 434 (681)
T ss_pred CEEEEeCCCCHHHHH----HHHc------CC-----------------------------------------Cce-----
Confidence 689999999643221 1000 00 000
Q ss_pred hHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1231 RVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1231 lKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
.+...+|... .....+..
T Consensus 435 ---s~i~~~p~~r~~i~~~~~~~--------------------------------------------------------- 454 (681)
T PRK10917 435 ---SVIDELPPGRKPITTVVIPD--------------------------------------------------------- 454 (681)
T ss_pred ---EEEecCCCCCCCcEEEEeCc---------------------------------------------------------
Confidence 0000112110 00000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH--------HHHHHHHHHHHc--CCeEEeecCCCC
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTTS 1378 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~--------~LDILed~L~~r--Giky~RLDGsts 1378 (2239)
.+...+...+.+....+++++|||.... .+..+.+.|... ++.+..+||+++
T Consensus 455 ------------------~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~ 516 (681)
T PRK10917 455 ------------------SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMK 516 (681)
T ss_pred ------------------ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 0001111222223356889999997532 234455555544 578999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1379 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1379 ~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.++|.+++++|.++... +|+||++.++|||++++++||++|++. ....+.|+.||++|.|.+..|.++.
T Consensus 517 ~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 517 PAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred HHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 99999999999975544 799999999999999999999999985 5688999999999999776665554
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=257.67 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=208.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa-Pslk 1077 (2239)
+|+++|.+++..++. +.+.|++..||+|||+.++..+...+.. .....+|||+|+. |..|...+|.++. .++.
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999988875 8889999999999999998877766543 2345789999987 6678888888886 3577
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--------hhcccCCceEEEecccccccC-hhhHHHHHhhcc-
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY- 1147 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~L- 1147 (2239)
+.+|.|......+ . ......+|+|||++++.... ..| .+.++|||||||.+.+ ..+.+...+.++
T Consensus 111 v~~~~Gdt~~~~r--~-~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 111 PATYDGDTPTEER--R-WAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred EEEEeCCCCHHHH--H-HHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 7888887553322 1 22235799999999986321 112 2568999999999965 334433333332
Q ss_pred ------c-cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1148 ------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1148 ------k-a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
. ....+++|||- .| ..++.. . ++..|+....
T Consensus 186 ri~~~~g~~~q~i~~SATi-~n-~~~~~~---~--------------l~g~~~~~i~----------------------- 223 (742)
T TIGR03817 186 RLCARYGASPVFVLASATT-AD-PAAAAS---R--------------LIGAPVVAVT----------------------- 223 (742)
T ss_pred HHHHhcCCCCEEEEEecCC-CC-HHHHHH---H--------------HcCCCeEEEC-----------------------
Confidence 1 23578899994 22 222211 1 1111110000
Q ss_pred HhhhhHHhhHhHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
....|... ...++.+ .. +. + .. . .. ..
T Consensus 224 ---------------~~~~~~~~~~~~~~~p-~~-----~~-~--------~~--~-~~---~~---------------- 251 (742)
T TIGR03817 224 ---------------EDGSPRGARTVALWEP-PL-----TE-L--------TG--E-NG---AP---------------- 251 (742)
T ss_pred ---------------CCCCCcCceEEEEecC-Cc-----cc-c--------cc--c-cc---cc----------------
Confidence 00011111 1111110 00 00 0 00 0 00 00
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--------CCeEE
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVYR 1371 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--------Giky~ 1371 (2239)
.| . .....+..+|..+ ...+.++||||+.+..++.|..+|... +..+.
T Consensus 252 ~r-----------------~---~~~~~~~~~l~~l----~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~ 307 (742)
T TIGR03817 252 VR-----------------R---SASAEAADLLADL----VAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVA 307 (742)
T ss_pred cc-----------------c---chHHHHHHHHHHH----HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchh
Confidence 00 0 0000133333333 345789999999999999999988753 56777
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1372 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1372 RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
.+||+++.++|.+++++|.++... +|++|+++++|||+.++|+||+||.|-+...|.||+||++|.|....+.
T Consensus 308 ~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai 380 (742)
T TIGR03817 308 AYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVV 380 (742)
T ss_pred heecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEE
Confidence 899999999999999999975443 7999999999999999999999999999999999999999999775543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=266.16 Aligned_cols=307 Identities=18% Similarity=0.216 Sum_probs=209.5
Q ss_pred CCChHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.++.+.|..++.-++.-... ..+.|++.+||+|||.+++..+...+. ....+|||||+. |+.|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 37899999999988775432 256799999999999987654433332 345799999988 668888889887754
Q ss_pred --CceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-cc
Q 000101 1076 --VSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk-a~ 1150 (2239)
+.+.++.|. ...+......+..+..+|||+|++.+..+ +.-.++.+|||||+|++.. .....+..++ ..
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~~ 749 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRADV 749 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCCC
Confidence 455555543 34444445555567889999999876532 2224688999999999832 2334455554 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..|+|||||+...+.-. +..+.++.++. .+ |
T Consensus 750 qvLl~SATpiprtl~l~--~~gl~d~~~I~----------~~--------------------------------p----- 780 (1147)
T PRK10689 750 DILTLTATPIPRTLNMA--MSGMRDLSIIA----------TP--------------------------------P----- 780 (1147)
T ss_pred cEEEEcCCCCHHHHHHH--HhhCCCcEEEe----------cC--------------------------------C-----
Confidence 68999999976543211 11111110000 00 0
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
...+|-+ + +.....
T Consensus 781 -----~~r~~v~--~-~~~~~~---------------------------------------------------------- 794 (1147)
T PRK10689 781 -----ARRLAVK--T-FVREYD---------------------------------------------------------- 794 (1147)
T ss_pred -----CCCCCce--E-EEEecC----------------------------------------------------------
Confidence 0000000 0 000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHH
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL~~ 1388 (2239)
.......++.++. .+.+|+|||+.+..++.+.+.|... ++.+..+||.|+.++|.+++.+
T Consensus 795 -----------------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~ 856 (1147)
T PRK10689 795 -----------------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 (1147)
T ss_pred -----------------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 0001122333333 3678999999999999999999877 7889999999999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
|.+++.+ +||||+++++|||++++++||+.+++ |+...+.|+.||++|.|.+..|.++.
T Consensus 857 Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 857 FHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 9976555 79999999999999999999988775 67888999999999999887665543
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=239.15 Aligned_cols=321 Identities=20% Similarity=0.236 Sum_probs=226.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-----PHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~G-----P~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
.+.+.|..++...+. +...|-|.-||+|||+.++..++..+. ...|. -+|||.|+. |..|....+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~-r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALY-RLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHH-HcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 577788888877775 667788999999999999887765443 23333 479999998 7778877777765
Q ss_pred --CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccCh--hhHHHHHhhc
Q 000101 1074 --PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1146 (2239)
Q Consensus 1074 --Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~ 1146 (2239)
..+..-++.|+.+..-+ ..+....||+|||+++|..+.. .|......++|+|||+||... ...+-.++..
T Consensus 166 k~h~fSaGLiiGG~~~k~E---~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~ 242 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE---LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIEN 242 (758)
T ss_pred hccccccceeecCchhHHH---HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHh
Confidence 35677777888764332 3455688999999999987753 566668899999999999653 4445566667
Q ss_pred cccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
++..+ -||+|||+. ++..||.- |++-+|.+..-. .+
T Consensus 243 lP~~RQTLLFSATqt-~svkdLaR-LsL~dP~~vsvh-----------------e~------------------------ 279 (758)
T KOG0343|consen 243 LPKKRQTLLFSATQT-KSVKDLAR-LSLKDPVYVSVH-----------------EN------------------------ 279 (758)
T ss_pred CChhheeeeeecccc-hhHHHHHH-hhcCCCcEEEEe-----------------cc------------------------
Confidence 76554 688899983 33344422 122222221100 00
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
.+.-++.+ |++.
T Consensus 280 ----------------------a~~atP~~--------------------------------------------L~Q~-- 291 (758)
T KOG0343|consen 280 ----------------------AVAATPSN--------------------------------------------LQQS-- 291 (758)
T ss_pred ----------------------ccccChhh--------------------------------------------hhhe--
Confidence 00000000 0000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRq 1383 (2239)
| .++....|+.+|-..|.... ..|.|||......+.++.+.|... |++...|||.|++..|.
T Consensus 292 --y------------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 292 --Y------------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred --E------------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 0 01122236666666555433 468999988888888887777643 89999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhh
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI 1458 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI 1458 (2239)
++..+|.. ...++|+||+++++|||++.+|.||.||.|-+...|+||.||+.|.+...+..++..-..++.+
T Consensus 356 ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 356 EVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred HHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 99999986 3357999999999999999999999999999999999999999999988888777654433443
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=258.03 Aligned_cols=326 Identities=17% Similarity=0.154 Sum_probs=203.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHH---
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSE--- 1068 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~------~~GP~LIVVP~S-LLsQW~~E--- 1068 (2239)
++|+|+|..++..++. +.++|++..||+|||++++..+...+.... ....+|+|+|+. |..++...
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987754 789999999999999998776654433221 123489999987 66666553
Q ss_pred ----HHHHC-------CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hc--ccCCceEEEecccccc
Q 000101 1069 ----LHKWL-------PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1069 ----f~Kwa-------Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHrI 1133 (2239)
+..|+ +.+.+.+++|......+. ......++|+|||++++..... .+ .-.+.++|||||+|.+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~--~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ--KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH--HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 33443 356777888875433221 1223468999999999853321 11 1125688999999999
Q ss_pred cCh--hhHHHHHhhc---c--ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000101 1134 KDR--ESVLARDLDR---Y--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1206 (2239)
Q Consensus 1134 KN~--~SKlskaLk~---L--ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~ 1206 (2239)
.+. ...+...+.+ + ....+++||||. .++.++.. ||..... . +..
T Consensus 185 ~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~---------------~-~~~------- 236 (876)
T PRK13767 185 AENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYED---------------D-GEP------- 236 (876)
T ss_pred ccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCccc---------------c-CCC-------
Confidence 743 2222223322 2 234689999995 22333322 2211000 0 000
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhH
Q 000101 1207 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1286 (2239)
Q Consensus 1207 l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~ 1286 (2239)
+++.+ +...........+.++.... +.
T Consensus 237 -----------------r~~~i------v~~~~~k~~~i~v~~p~~~l----~~-------------------------- 263 (876)
T PRK13767 237 -----------------RDCEI------VDARFVKPFDIKVISPVDDL----IH-------------------------- 263 (876)
T ss_pred -----------------CceEE------EccCCCccceEEEeccCccc----cc--------------------------
Confidence 00000 00000000011111110000 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc
Q 000101 1287 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1366 (2239)
Q Consensus 1287 ~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r 1366 (2239)
.. . ......+...|.++...++++||||+.+..++.+...|...
T Consensus 264 -------------------------~~-----~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 264 -------------------------TP-----A------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -------------------------cc-----c------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00 0 00001122233344445789999999999999999988763
Q ss_pred ------CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1367 ------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1367 ------Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
+..+..+||+++.++|..+++.|+++... +|+||.++++|||++++|+||+||+|.+...|+||+||++|.
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 46788899999999999999999975433 799999999999999999999999999999999999999986
Q ss_pred -CCcceEEEEE
Q 000101 1441 -GQKREVKVIY 1450 (2239)
Q Consensus 1441 -GQkKeV~Vyr 1450 (2239)
|......++.
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4444444443
|
|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-23 Score=211.09 Aligned_cols=104 Identities=14% Similarity=0.315 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
|+.+|++||+.|...+|++||.++..|+.+|++.++||||++ |++||||.+|.+||++++|.++++|..||.|||.||+
T Consensus 1 ~~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 1 MQQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDV-IKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred ChHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
.||+++|.+|.+|..|+++|.++.+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998753
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=235.87 Aligned_cols=313 Identities=22% Similarity=0.302 Sum_probs=217.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHH---H
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELH---K 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~S-LLsQW~~Ef~---K 1071 (2239)
+|-+-|...+.-++. +...+.+.-||+|||+.++..+..++.... +.-.+|||||+. |..|...|.+ +
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 677888888776665 667899999999999999888777654311 122479999998 5666666544 5
Q ss_pred HCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHhhc
Q 000101 1072 WLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDLDR 1146 (2239)
Q Consensus 1072 waPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaLk~ 1146 (2239)
+.++..+.+..|+..-+..... +.. ..+++|.|++.|..+... +.....+++|||||+|+.. +.-.+-+++..
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~k-l~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADK-LVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKI 257 (543)
T ss_pred hCCCcceEEEeCCccchHHHHH-hhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHh
Confidence 5567788888887665444322 333 889999999999877532 2222447999999999954 55566677777
Q ss_pred cccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
++..+ -+++|||- ...+ ..|..+
T Consensus 258 lpk~rqt~LFSAT~-~~kV----------------------------------------------------~~l~~~--- 281 (543)
T KOG0342|consen 258 LPKQRQTLLFSATQ-PSKV----------------------------------------------------KDLARG--- 281 (543)
T ss_pred ccccceeeEeeCCC-cHHH----------------------------------------------------HHHHHH---
Confidence 76554 46778882 0000 011111
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
.|++ + ...+.|. + ..+.. .-..+.+-
T Consensus 282 -~L~~---d---------~~~v~~~--------------------d-~~~~~------------------The~l~Qg-- 307 (543)
T KOG0342|consen 282 -ALKR---D---------PVFVNVD--------------------D-GGERE------------------THERLEQG-- 307 (543)
T ss_pred -hhcC---C---------ceEeecC--------------------C-CCCcc------------------hhhcccce--
Confidence 0110 0 0011110 0 00000 00001110
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
-.+.....+|-+|..+|.+.... .||||||....+..++.+.|+...+++..|||..++..|..+
T Consensus 308 --------------yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 308 --------------YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred --------------EEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 00112233567777777776533 899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
..+|...++. ||+||+++++|+|++++|.||.||+|-+|..|+||+||++|-|-+.+.
T Consensus 373 ~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~a 430 (543)
T KOG0342|consen 373 FFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKA 430 (543)
T ss_pred HHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceE
Confidence 9999986666 899999999999999999999999999999999999999998877554
|
|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=208.94 Aligned_cols=103 Identities=13% Similarity=0.253 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.|+..|+++++.|...+|++||+++..|+.+|+|+++||||.+ |++||||.+|++||++++|.++++|..||+|||.||
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~-I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYER-ITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhh-CCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
+.||+++|++|++|+.|+++|.+.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999874
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=210.74 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
-++|++|+++|.+.++++||.|+.+|+++|+|+++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEV-VSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHH-hCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||+++|.+|++|..|+++|...++..-+
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999887655
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-21 Score=229.65 Aligned_cols=342 Identities=20% Similarity=0.304 Sum_probs=207.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCC-eEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGP-HLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-----~~~GP-~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.+.-.|..+|.-++. +...++-..||+|||+..+..|...+... ...|+ .|||||+. |+.|..+.+.+.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 355678888887776 77789999999999999999887766432 22344 59999998 788888888888
Q ss_pred CCCCceEE---EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHh
Q 000101 1073 LPSVSCIY---YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDL 1144 (2239)
Q Consensus 1073 aPslkvvv---y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaL 1144 (2239)
...+.++| ..|+.....+. .-...+.+|+|.|++++..+... +...+..+||+|||++|.. ..-.++.+|
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEK--ARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEK--ARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred hcCceEEeeceeecccccccHH--HHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 76555443 34442221111 12235789999999999987543 3333467899999999954 333344444
Q ss_pred hccc------c--------ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1145 DRYR------C--------QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1145 k~Lk------a--------~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
+.+. | ...+|||||- ...+.
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATL-td~V~--------------------------------------------- 346 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATL-TDGVN--------------------------------------------- 346 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhh-HHHHH---------------------------------------------
Confidence 4331 1 1134555551 11111
Q ss_pred HHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHH
Q 000101 1211 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1290 (2239)
Q Consensus 1211 e~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ 1290 (2239)
+|..+- | +....|..+-+..|..
T Consensus 347 -------rLa~~s---------------L--kDpv~I~ld~s~~~~~--------------------------------- 369 (708)
T KOG0348|consen 347 -------RLADLS---------------L--KDPVYISLDKSHSQLN--------------------------------- 369 (708)
T ss_pred -------HHhhcc---------------c--cCceeeeccchhhhcC---------------------------------
Confidence 111100 0 0000011000000000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC----Cccccchhh-HhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHH
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYP----YFSDLSKDF-LVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYL 1363 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p----~~~~~s~d~-Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L 1363 (2239)
.....+..+|.-|+-..- ..+.+...+ ++..--.+.+|..+|.... ....|+|||....++++.-.+.|
T Consensus 370 ----p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 370 ----PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred ----cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 000000111111110000 000000000 1111124455666665543 23458899988888776655554
Q ss_pred H----H------------------cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1364 Q----W------------------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1364 ~----~------------------rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
. . .+.++.+|||+|.+++|..++..|.... ..||+||+++++||||+.++.||.|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEe
Confidence 3 1 1457999999999999999999998632 3489999999999999999999999
Q ss_pred CCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhh
Q 000101 1422 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 1457 (2239)
Q Consensus 1422 DppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEk 1457 (2239)
|+|..+..|+||+||+.|+|-+.+...|.+-...+.
T Consensus 523 d~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey 558 (708)
T KOG0348|consen 523 DPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEY 558 (708)
T ss_pred CCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHH
Confidence 999999999999999999999988766665443333
|
|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=207.40 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++++|+.|++.|.+..|++||.++..|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
.||+++|.+|.+|..|+++|.+++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999875
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=206.55 Aligned_cols=100 Identities=19% Similarity=0.330 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
|..|.+|++.|.+..|++||.|+++|+.+|+|.++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAV-IKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHH-cCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDLFFD 2039 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~ 2039 (2239)
||+++|.+|++|+.|+++|..
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999975
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=235.31 Aligned_cols=344 Identities=18% Similarity=0.210 Sum_probs=213.5
Q ss_pred CChHHHHHHHHHHHHhhcC-----CCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNN-----KLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n-----~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
.++|-|...+.|++.-.+. ....+++..||+|||+.....|..++..+ -.+-++|||||+. |+.|...+|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 7999999999999876552 23347889999999999999888887654 2445789999988 678899999999
Q ss_pred CCC--CceEEEecchhhHHHHHHHH---hhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChhhH--HHH
Q 000101 1073 LPS--VSCIYYVGAKDQRSRLFSQV---AALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESV--LAR 1142 (2239)
Q Consensus 1073 aPs--lkvvvy~Gskd~Rk~l~~~i---~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~SK--lsk 1142 (2239)
+++ +.|+...|....+.+..... .....+|+|+|+++|+.+... +.-.+..|+|||||+||.+.... +..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 45555667655554443332 233569999999999988653 33346789999999999764333 333
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.+.......++.+++ .|..+..-.-|..|... ...|.+ ....|.++
T Consensus 319 v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~~-----------------------~~~~l~kL 364 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLGK-----------------------LYPPLWKL 364 (620)
T ss_pred HHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcCC-----------------------cCchhHhh
Confidence 333333332322221 11111100001000000 000000 00011111
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
+. .......|.|. ..|+
T Consensus 365 ~~--------satLsqdP~Kl------------------------------------------------------~~l~- 381 (620)
T KOG0350|consen 365 VF--------SATLSQDPSKL------------------------------------------------------KDLT- 381 (620)
T ss_pred hc--------chhhhcChHHH------------------------------------------------------hhhh-
Confidence 11 11111111110 0000
Q ss_pred HcCCCCCCCCC---------ccccchhhHhhcc-cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH----HcCC
Q 000101 1303 TCNHPLLNYPY---------FSDLSKDFLVKSC-GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL 1368 (2239)
Q Consensus 1303 iCnHP~L~~p~---------~~~~s~d~Li~~S-GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~----~rGi 1368 (2239)
.++|-++... ...+....++... -|-..+..++.. .+..++|+|++..+....|...|. ...+
T Consensus 382 -l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 382 -LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred -cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 0111111000 0000000011111 133334444443 347899999999888877777776 3456
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1369 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1369 ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
++-.++|..+.+.|.+++.+|+.++.. +|||++++++|+|+.++|.||+||+|-.-..|+||+||+.|.||...+
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE
Confidence 666799999999999999999986655 799999999999999999999999999999999999999999998664
|
|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=206.13 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
|+++++|+..|.+.+|.+||.++.+|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||+|||.||+.
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKI-ILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHH-cCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
||+++|+||.+|+.|+++|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999874
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=225.46 Aligned_cols=313 Identities=19% Similarity=0.221 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Psl 1076 (2239)
+-.|.|..++..++. +..||=|.-||+|||..+...|...+...+..--.||++|+. +..|..+.|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 566899999999987 889999999999999998888887776555555679999998 6666666666543 367
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-h-----cccCCceEEEecccccccChhh--HHHHHhhccc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-K-----LSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR 1148 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-~-----L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lk 1148 (2239)
++.+++|+.+.-.+.. ....++||||+|++.+..... . +...+..++|+|||+++.+... .+.-...-++
T Consensus 105 K~~vivGG~d~i~qa~--~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP 182 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP 182 (442)
T ss_pred eEEEEEccHHHhhhhh--hcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC
Confidence 8888888876554432 344588999999999865432 1 2223568999999999976422 2222222344
Q ss_pred cc-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1149 CQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1149 a~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.. .-++|||| +.+++.+| |..|+..... |
T Consensus 183 ~~RQtLlfSAT-itd~i~ql---------------------~~~~i~k~~a---------------------------~- 212 (442)
T KOG0340|consen 183 KPRQTLLFSAT-ITDTIKQL---------------------FGCPITKSIA---------------------------F- 212 (442)
T ss_pred CccceEEEEee-hhhHHHHh---------------------hcCCcccccc---------------------------e-
Confidence 44 46889999 22322222 2222111000 0
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.++. .+ -.+.-..||.
T Consensus 213 ------~~e~-~~----------~vstvetL~q----------------------------------------------- 228 (442)
T KOG0340|consen 213 ------ELEV-ID----------GVSTVETLYQ----------------------------------------------- 228 (442)
T ss_pred ------EEec-cC----------CCCchhhhhh-----------------------------------------------
Confidence 0000 00 0000001111
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
...++...+|-..|..+|..+.. ....++||.+.+..+.+|...|+..++....||+-|++.+|...+
T Consensus 229 -----------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 229 -----------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred -----------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 00112223466667777777765 567899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
.+|+++... +||+|+++++|||+++++.||+||.|-+|..|+||.||+.|.|.....
T Consensus 298 srFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a 354 (442)
T KOG0340|consen 298 SRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA 354 (442)
T ss_pred HHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce
Confidence 999975554 799999999999999999999999999999999999999999988653
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=226.42 Aligned_cols=308 Identities=19% Similarity=0.269 Sum_probs=209.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC---CCeEEEechH-HHHHHHH---HHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY---GPHLIIVPNA-VLVNWKS---ELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~---GP~LIVVP~S-LLsQW~~---Ef~Kw 1072 (2239)
...|.|...+.-.+. +..-+-|..||+|||..++..++..+-+++.. -++||+||+. |.-|... .+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 455778887765543 44446678899999999998887766555433 3689999998 5455444 44455
Q ss_pred CCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1073 LPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1073 aPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
+ .+.+++..|+-+.+.+- ......++|||.|++.|+.+... |.-....++|+|||+||... ...+...+...
T Consensus 279 t-~I~~~L~vGGL~lk~QE--~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lc 355 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQE--AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLC 355 (691)
T ss_pred c-cceeeeeecCccHHHHH--HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhc
Confidence 4 48888899988776543 34556899999999999987543 33446788999999999653 33344444333
Q ss_pred cc-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1148 RC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1148 ka-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
.. ..-+|+|||- ...+.||.+| - +++|+...
T Consensus 356 pk~RQTmLFSATM-teeVkdL~sl---S--------------L~kPvrif------------------------------ 387 (691)
T KOG0338|consen 356 PKNRQTMLFSATM-TEEVKDLASL---S--------------LNKPVRIF------------------------------ 387 (691)
T ss_pred cccccceeehhhh-HHHHHHHHHh---h--------------cCCCeEEE------------------------------
Confidence 22 2358889982 2233333221 0 11111110
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
+.-+ ... ...|..-+.++|
T Consensus 388 ----------------------vd~~--~~~--------------------------------a~~LtQEFiRIR----- 406 (691)
T KOG0338|consen 388 ----------------------VDPN--KDT--------------------------------APKLTQEFIRIR----- 406 (691)
T ss_pred ----------------------eCCc--ccc--------------------------------chhhhHHHheec-----
Confidence 0000 000 000000000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
+. +.--+-.+|..++..+. ..++|||++....+..|.-.|...|+++..|||+.++.+|.+.+
T Consensus 407 -----~~----------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 407 -----PK----------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred -----cc----------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHH
Confidence 00 00012333444444444 56899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
+.|+....+ |||+|+++++|||+..+-+||+|+.|-....|+||+||+.|.|..
T Consensus 470 ~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 470 EKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA 523 (691)
T ss_pred HHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccC
Confidence 999976666 799999999999999999999999999999999999999999965
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=229.91 Aligned_cols=339 Identities=20% Similarity=0.234 Sum_probs=224.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--------CCCCC-eEEEechH-HHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--------GNYGP-HLIIVPNA-VLVNWKSEL 1069 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k--------~~~GP-~LIVVP~S-LLsQW~~Ef 1069 (2239)
.--|.|..++--++. +.+.|...|+|+|||..++..|...+... ...|| .+|++|+. |..|...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 455788888875554 67789999999999988777665544322 22344 57888998 667788888
Q ss_pred HHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHH
Q 000101 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARD 1143 (2239)
Q Consensus 1070 ~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlska 1143 (2239)
.+|+. ++.++..+|+..--.+-+ ......+|+|.|++.|.... -.|......|||+|||++|.. +.-...+.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f--qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~i 420 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF--QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKI 420 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh--hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHH
Confidence 88874 466777777654322222 22347789999999998654 345556789999999999954 22333333
Q ss_pred hhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000101 1144 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223 (2239)
Q Consensus 1144 Lk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL 1223 (2239)
|..++ ..|- ..+.+..... .++.+.+
T Consensus 421 L~~mP-----------ssn~-------------------------------------k~~tde~~~~------~~~~~~~ 446 (673)
T KOG0333|consen 421 LEQMP-----------SSNA-------------------------------------KPDTDEKEGE------ERVRKNF 446 (673)
T ss_pred HHhCC-----------cccc-------------------------------------CCCccchhhH------HHHHhhc
Confidence 33321 1110 0000000000 1111111
Q ss_pred hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKi 1303 (2239)
.-. | --.........|++.-..|-+.+........... ..
T Consensus 447 ---~~~--k-------~yrqT~mftatm~p~verlar~ylr~pv~vtig~-----~g----------------------- 486 (673)
T KOG0333|consen 447 ---SSS--K-------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGS-----AG----------------------- 486 (673)
T ss_pred ---ccc--c-------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEecc-----CC-----------------------
Confidence 000 0 0012233445566655555444433221110000 00
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000101 1304 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1383 (2239)
Q Consensus 1304 CnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq 1383 (2239)
-++|.+.. .-+.+..+.|+..|..||... ....+|||.+....+|.|++.|...||.+++|||+-++++|+
T Consensus 487 k~~~rveQ-------~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 487 KPTPRVEQ-------KVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred CCccchhe-------EEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 01111100 011244566888899988875 357899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+|..|+.+..+ ||++|+++|+|||++++.+||+||..-+...|.|||||++|.|+...+.-|+
T Consensus 558 ~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 558 NALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred HHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEe
Confidence 999999987777 8999999999999999999999999999999999999999999887665443
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=228.31 Aligned_cols=332 Identities=21% Similarity=0.347 Sum_probs=227.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
..|||||.+.|..|.-.- .-..||+...+|.|||+..+..++... +.+||+|-.+ -+.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 379999999999886411 124589999999999998877665432 4789999877 48999999999974 3
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh----------hhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
..++.+.....++ ...+..|+||||.++..- ..+|....|.++|+||.|-+- ..-..+.|.
T Consensus 374 ~~i~rFTsd~Ke~-------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP--A~MFRRVls 444 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP--AKMFRRVLS 444 (776)
T ss_pred cceEEeecccccc-------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch--HHHHHHHHH
Confidence 3444554443332 335678999999998532 456888899999999999983 333444455
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhh-cCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFL-lP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
-..++..|+||||-+..+ |-..=|||| .|.++. ..|.+-..
T Consensus 445 iv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE-----------------------AnWmdL~~------------- 486 (776)
T KOG1123|consen 445 IVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-----------------------ANWMDLQK------------- 486 (776)
T ss_pred HHHHHhhccceeEEeecc--ccccccceeecchhhh-----------------------ccHHHHHh-------------
Confidence 567888999999977654 112223554 333321 01111000
Q ss_pred hHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
...+..-....|+|+||+.-...|-..... +.+ |-
T Consensus 487 -----------kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~-------------------------kr~------lL--- 521 (776)
T KOG1123|consen 487 -----------KGHIAKVQCAEVWCPMTPEFYREYLRENTR-------------------------KRM------LL--- 521 (776)
T ss_pred -----------CCceeEEeeeeeecCCCHHHHHHHHhhhhh-------------------------hhh------ee---
Confidence 012333445678999998765544321110 000 00
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
| +-...||....-++......|.|+|||+..+-.+ .+|-...|-+| |.|.|++.+|.+
T Consensus 522 ---y--------------vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kpf--IYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 522 ---Y--------------VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKPF--IYGPTSQNERMK 579 (776)
T ss_pred ---e--------------ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCce--EECCCchhHHHH
Confidence 0 1112388888888888888999999999766544 44444445555 789999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcce----EEEEEEeh
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE----VKVIYMEA 1453 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKe----V~VyrLva 1453 (2239)
+++.|+- +..+..|.|| ++|...+||+.|+++|...+.. +-.++.||.||+.|.-.... +..|-|++
T Consensus 580 ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 580 ILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred HHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 9999986 5666666666 9999999999999999998885 66789999999999863322 45555554
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=231.21 Aligned_cols=312 Identities=21% Similarity=0.271 Sum_probs=213.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----------CCCCeEEEechH-HHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----------NYGPHLIIVPNA-VLVNWKSE 1068 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----------~~GP~LIVVP~S-LLsQW~~E 1068 (2239)
...|+|+.++.-+.. +.+.+.|..||+|||..++..+...+...+ .....||++|++ |+.|..+|
T Consensus 96 ~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 677999999876665 777899999999999999987654443222 235679999988 88999999
Q ss_pred HHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC---hhhHHH
Q 000101 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD---RESVLA 1141 (2239)
Q Consensus 1069 f~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN---~~SKls 1141 (2239)
..++.- .+++++.+|..+.+.+.. ......+|+|+|++.|.... ..+..-...|+|||||++|.. +.-.+.
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~--~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir 249 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLR--FIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIR 249 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhh--hhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHH
Confidence 999974 455555556555554443 33458899999999997653 334444566999999999965 223344
Q ss_pred HHhhcc-----ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHH
Q 000101 1142 RDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1216 (2239)
Q Consensus 1142 kaLk~L-----ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii 1216 (2239)
+.+... ....-+++|||= .-.
T Consensus 250 ~iv~~~~~~~~~~~qt~mFSAtf-p~~----------------------------------------------------- 275 (482)
T KOG0335|consen 250 KIVEQLGMPPKNNRQTLLFSATF-PKE----------------------------------------------------- 275 (482)
T ss_pred HHhcccCCCCccceeEEEEeccC-Chh-----------------------------------------------------
Confidence 444332 123345556661 000
Q ss_pred HHHHHhhhhHHhhH----hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHH
Q 000101 1217 HRLHQILEPFMLRR----RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1292 (2239)
Q Consensus 1217 ~RLhklLrPFmLRR----lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ks 1292 (2239)
+..+...|+.-. ....|..........+++|.
T Consensus 276 --iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~------------------------------------------ 311 (482)
T KOG0335|consen 276 --IQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN------------------------------------------ 311 (482)
T ss_pred --hhhhHHHHhhccceEEEEeeeccccccceeEeeeec------------------------------------------
Confidence 001111111100 00000111111112222221
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-------cCCeEEEEEccHHHHHHHHHHHHH
Q 000101 1293 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-------TGHRVLLFSTMTKLLDILEEYLQW 1365 (2239)
Q Consensus 1293 L~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLka-------tGhKVLIFSQ~t~~LDILed~L~~ 1365 (2239)
...|...|..+|..... ..++++||+.....++.|+.+|..
T Consensus 312 --------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~ 359 (482)
T KOG0335|consen 312 --------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS 359 (482)
T ss_pred --------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc
Confidence 11222233333332220 135899999999999999999999
Q ss_pred cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1366 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1366 rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
.++++..|||.-+..+|.+.|+.|..+... +||+|.++++|||++.+++||+||.|-+-..|+|||||++|.|...-
T Consensus 360 ~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ 436 (482)
T KOG0335|consen 360 NGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGR 436 (482)
T ss_pred CCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCce
Confidence 999999999999999999999999976555 79999999999999999999999999999999999999999999977
Q ss_pred EEEEE
Q 000101 1446 VKVIY 1450 (2239)
Q Consensus 1446 V~Vyr 1450 (2239)
++.|.
T Consensus 437 atsf~ 441 (482)
T KOG0335|consen 437 ATSFF 441 (482)
T ss_pred eEEEe
Confidence 66664
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=239.91 Aligned_cols=316 Identities=19% Similarity=0.134 Sum_probs=199.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|+|.+++.-+ +..+.|.|++..||+|||+++...+...+. ..+.+|||+|.. |+.++..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999753 335778999999999999998766655543 346899999976 88899999988754 677
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh--hhHHHHHhhcc----cc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY----RC 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L----ka 1149 (2239)
+..+.|....... .....+|+|+|++.+...... ..-...++|||||+|.+.+. ...+-..+..+ ..
T Consensus 97 v~~~tGd~~~~~~-----~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~ 171 (737)
T PRK02362 97 VGISTGDYDSRDE-----WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPD 171 (737)
T ss_pred EEEEeCCcCcccc-----ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCC
Confidence 8888886543322 124679999999987543221 11125699999999999653 22222223322 33
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
.+.++||||.- +..++. +|+...+... ..+|.-+
T Consensus 172 ~qii~lSATl~--n~~~la------------------~wl~~~~~~~-------------------------~~rpv~l- 205 (737)
T PRK02362 172 LQVVALSATIG--NADELA------------------DWLDAELVDS-------------------------EWRPIDL- 205 (737)
T ss_pred CcEEEEcccCC--CHHHHH------------------HHhCCCcccC-------------------------CCCCCCC-
Confidence 46789999952 334443 3332110000 0011000
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
...++.. . .+ .... ... .+
T Consensus 206 --------------~~~v~~~-~----~~----------~~~~--~~~------------------------------~~ 224 (737)
T PRK02362 206 --------------REGVFYG-G----AI----------HFDD--SQR------------------------------EV 224 (737)
T ss_pred --------------eeeEecC-C----ee----------cccc--ccc------------------------------cC
Confidence 0000000 0 00 0000 000 00
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-----------------------
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----------------------- 1366 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r----------------------- 1366 (2239)
....+...+ .++......++++||||..+..+..++..|...
T Consensus 225 --------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 225 --------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred --------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 000011111 112222346789999999988877766666432
Q ss_pred -------------CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC-----CC
Q 000101 1367 -------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----PD 1424 (2239)
Q Consensus 1367 -------------Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD-----pp 1424 (2239)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. || .|
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 12456789999999999999999975433 7999999999999999988886 77 57
Q ss_pred CCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1425 PNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1425 WNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
.+...|.|++|||+|.|....-.++.+
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~ 393 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLL 393 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEE
Confidence 788999999999999998744333333
|
|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=200.17 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+.+.|+++|+.|...+|++||.+++.|+.+|+|+++||||++ |++||||.+|.+||++ |.++.+|..||.|||+||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~i-I~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKI-IKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHH-hcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999 9999999999999998 9999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
.||+++|.+|.+|..|+++|.+++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998775
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=214.25 Aligned_cols=304 Identities=18% Similarity=0.230 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CCceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--slkvv 1079 (2239)
..|..++..++. +.+.|.-..-|+|||.++..-++.........-.+||+.|+. |..|....+..... ++.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 357788877776 888899999999999875443333333233334689999988 67787777777764 45666
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccC--hhhHHHHHhhccc-cceEEE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQRRLL 1154 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~rRLL 1154 (2239)
.+.|++..-..+.. .. .+-+||..|++++.+. +..|.-....++|+|||+.|.| ....++...+.++ ....++
T Consensus 128 acigg~n~gedikk-ld-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~ 205 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKK-LD-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVL 205 (400)
T ss_pred EEecCCccchhhhh-hc-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEE
Confidence 67777654333221 22 4668999999999765 4567777899999999999965 5667788888776 456788
Q ss_pred ecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhh
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1234 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkD 1234 (2239)
+|||- ..|+..+.++..
T Consensus 206 ~SATl----p~eilemt~kfm----------------------------------------------------------- 222 (400)
T KOG0328|consen 206 VSATL----PHEILEMTEKFM----------------------------------------------------------- 222 (400)
T ss_pred EeccC----cHHHHHHHHHhc-----------------------------------------------------------
Confidence 89993 223333222222
Q ss_pred hhcCCCCceEEEEE-eccCHHH-HHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1235 VEGSLPPKVSIVLR-CRMSAIQ-SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1235 VekdLP~K~e~VV~-c~MS~~Q-r~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
|+.+...++ -+++.+- +.+|-.+ + .
T Consensus 223 -----tdpvrilvkrdeltlEgIKqf~v~v--------e--~-------------------------------------- 249 (400)
T KOG0328|consen 223 -----TDPVRILVKRDELTLEGIKQFFVAV--------E--K-------------------------------------- 249 (400)
T ss_pred -----CCceeEEEecCCCchhhhhhheeee--------c--h--------------------------------------
Confidence 222222211 1111110 0011000 0 0
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
..=|+..|..+-..|. =..++|||+.....|+|.+.++...+.+..+||.|+.++|.+++.+|+++
T Consensus 250 ------------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg 315 (400)
T KOG0328|consen 250 ------------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG 315 (400)
T ss_pred ------------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC
Confidence 0004445554444432 34689999999999999999999999999999999999999999999998
Q ss_pred CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
.+. +|++|++-++|+|+|.++.||+||.|-|+..|+|||||.+|.|.+.-
T Consensus 316 ~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv 365 (400)
T KOG0328|consen 316 KSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 365 (400)
T ss_pred Cce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce
Confidence 777 89999999999999999999999999999999999999999997654
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=197.71 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+++.|++||+.|...+|.+||.++..|+++|++.++||||.+ |++||||.+|++||++++|.++.+|..||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVI-IKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
.||+++|.+|.+|+.|+++|.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=216.47 Aligned_cols=295 Identities=16% Similarity=0.181 Sum_probs=185.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhH-----------H
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQR-----------S 1089 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~R-----------k 1089 (2239)
.++..+||+|||.+++.++...+. ....+++|+|+|.. ++.++...+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 478899999999999998887764 34567899999966 888999999998764 344444432210 1
Q ss_pred HHHHHH-----hhcCccEEEEehhHHHHhhhh--------cccCCceEEEecccccccChhh-HHHHHhhccc--cceEE
Q 000101 1090 RLFSQV-----AALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRES-VLARDLDRYR--CQRRL 1153 (2239)
Q Consensus 1090 ~l~~~i-----~~~kfdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrIKN~~S-KlskaLk~Lk--a~rRL 1153 (2239)
...... .....+|+|||++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 111111 112467999999998754322 1223347999999999965322 2333333332 23578
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
++|||+- ..+. .|...+.....
T Consensus 160 ~~SATlp----~~l~---------------~~~~~~~~~~~--------------------------------------- 181 (358)
T TIGR01587 160 LMSATLP----KFLK---------------EYAEKIGYVEF--------------------------------------- 181 (358)
T ss_pred EEecCch----HHHH---------------HHHhcCCCccc---------------------------------------
Confidence 8999951 1110 11000000000
Q ss_pred hhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000101 1234 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1313 (2239)
Q Consensus 1234 DVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~ 1313 (2239)
....+..... ....|++....
T Consensus 182 --~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~- 202 (358)
T TIGR01587 182 --NEPLDLKEER--------------------------------------------------------RFERHRFIKIE- 202 (358)
T ss_pred --ccCCCCcccc--------------------------------------------------------ccccccceeec-
Confidence 0000000000 00000000000
Q ss_pred ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHHH----HH
Q 000101 1314 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESA----IV 1387 (2239)
Q Consensus 1314 ~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGi--ky~RLDGsts~eeRqei----L~ 1387 (2239)
.....|...+..++..+ ..+.++||||+....++.+...|...+. .+..+||.++..+|.+. ++
T Consensus 203 ---------~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 203 ---------SDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------cccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 00012444555555333 3578999999999999999999988776 48899999999999764 88
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc----eEEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR----EVKVIYM 1451 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK----eV~VyrL 1451 (2239)
.|.++.. .+|+||+++++|||+ .+|+||+++.+ +..++||+||++|.|.+. .|.||+.
T Consensus 273 ~f~~~~~---~ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 273 EMKKNEK---FVIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred HhcCCCC---eEEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 9986433 379999999999999 58999998876 789999999999999763 3555544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-19 Score=231.37 Aligned_cols=304 Identities=20% Similarity=0.185 Sum_probs=193.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-sl 1076 (2239)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. |+.++.++|.+|.. ++
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 37789999999999999987766655432 35789999976 77889999988753 46
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhc---cc-
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR---YR- 1148 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~---Lk- 1148 (2239)
.+..+.|........ ....+|+|+|++.+..... ...-.++++|||||+|.+.+. ...+...+.. +.
T Consensus 94 ~v~~~~G~~~~~~~~-----~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~ 168 (674)
T PRK01172 94 RVKISIGDYDDPPDF-----IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP 168 (674)
T ss_pred eEEEEeCCCCCChhh-----hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc
Confidence 666677764432221 2367999999997653321 111235789999999999642 2222222222 22
Q ss_pred cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1149 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
..+.++||||.- +. ..|.+|+....... ..+|
T Consensus 169 ~~riI~lSATl~--n~------------------~~la~wl~~~~~~~-------------------------~~r~--- 200 (674)
T PRK01172 169 DARILALSATVS--NA------------------NELAQWLNASLIKS-------------------------NFRP--- 200 (674)
T ss_pred CCcEEEEeCccC--CH------------------HHHHHHhCCCccCC-------------------------CCCC---
Confidence 345788999952 22 33444443221000 0000
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
.|-. ..+++.. .+| .+.. ..
T Consensus 201 ----------vpl~-~~i~~~~------~~~----------~~~~-~~-------------------------------- 220 (674)
T PRK01172 201 ----------VPLK-LGILYRK------RLI----------LDGY-ER-------------------------------- 220 (674)
T ss_pred ----------CCeE-EEEEecC------eee----------eccc-cc--------------------------------
Confidence 1100 0111100 000 0000 00
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc----------------------
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1366 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r---------------------- 1366 (2239)
.+. .+..++.+....++++||||..+..++.+...|...
T Consensus 221 ------------------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~ 281 (674)
T PRK01172 221 ------------------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLN 281 (674)
T ss_pred ------------------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHH
Confidence 000 012233444456789999999988877777766432
Q ss_pred ---CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC---------CCCcchHHHhh
Q 000101 1367 ---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQAV 1434 (2239)
Q Consensus 1367 ---Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp---------pWNP~~dlQAi 1434 (2239)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||+++ .+||++|. ++++..+.|++
T Consensus 282 ~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 282 EMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMI 357 (674)
T ss_pred HHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHh
Confidence 01355689999999999999999964433 7999999999999996 57787764 35677899999
Q ss_pred hhhcccCCcce
Q 000101 1435 ARAHRIGQKRE 1445 (2239)
Q Consensus 1435 GRAhRIGQkKe 1445 (2239)
|||+|.|....
T Consensus 358 GRAGR~g~d~~ 368 (674)
T PRK01172 358 GRAGRPGYDQY 368 (674)
T ss_pred hcCCCCCCCCc
Confidence 99999996554
|
|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-21 Score=194.50 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
.-.|+..|.+.+|++||.++..|+.+|++.++||||++ |++||||.+|..||++++|.++.+|..||.|||.||+.||+
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQE-IKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34788889999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000101 2022 FSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2022 ~~sev~~dA~~L~~~f~~~ 2040 (2239)
++|.+|.+|+.|+++|..+
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=231.96 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=86.1
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHH-----HHHHHHhc----CC----CCccEEEEeccccc
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRq-----eiL~~FNs----~d----s~~~VfLLSTrAGG 1407 (2239)
..+.++||||+.+..++.|...|...++ ..|||.++..+|. .++++|.. +. ..-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4567999999999999999999998887 8899999999999 78999975 21 01135799999999
Q ss_pred cccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1408 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1408 eGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
+|||+.. |+||+++.|+ ..|+||+||++|.|.....
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999985 9999988775 7899999999999986443
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-18 Score=220.56 Aligned_cols=413 Identities=15% Similarity=0.181 Sum_probs=238.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.|+|||...+..++. +.|+|+...||.|||++++..+. +.... ...++||+|+. |..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~-l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLY-LNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHH-HHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 478888777765553 34579999999999999877643 22222 23689999988 77777777766543 44
Q ss_pred ceEEEecc-hh--hHHHHHHHHhhcCccEEEEehhHHHHh--hh-------hcccCCceEEEecccccccChhhHHHHHh
Q 000101 1077 SCIYYVGA-KD--QRSRLFSQVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1077 kvvvy~Gs-kd--~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
.+.+..+. .. ...... ......+|+++|++.|..+ +. .+....+.++||||||.|.-..
T Consensus 141 sv~~~~~~s~~~~~~~~~r--r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe------- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEK--RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS------- 211 (762)
T ss_pred cEEEEECCCCccccCHHHH--HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc-------
Confidence 55443332 11 111111 1224689999999999533 11 1223467899999999984221
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCC-----------------h-HHHHhhhcCCcccCCCCCCCChhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------R-KAFHDWFSQPFQKEGPTHNADDDW 1206 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s-----------------~-k~F~e~F~kPf~~~g~~~~~e~d~ 1206 (2239)
+..-|++||.|-.. ..+|..++-+-..+-.. . ..-.+.|..+ +
T Consensus 212 ----artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--------~----- 272 (762)
T TIGR03714 212 ----AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--------N----- 272 (762)
T ss_pred ----CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--------c-----
Confidence 23458888877533 45676664332221110 0 0111111100 0
Q ss_pred HHHHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh-
Q 000101 1207 LETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR- 1277 (2239)
Q Consensus 1207 l~~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~- 1277 (2239)
+.........+.+...|+. +++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 273 l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a 348 (762)
T TIGR03714 273 LYSEEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMA 348 (762)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeee
Confidence 0001111223344444444 234443333322 12222221 122 2344455555443333322211000
Q ss_pred -----hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEE
Q 000101 1278 -----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVL 1347 (2239)
Q Consensus 1278 -----~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLkatGhKVL 1347 (2239)
...+......+........-.+|.++-+-+.+..|..... ..........|+..+...+..+...+..||
T Consensus 349 ~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 349 SITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVL 428 (762)
T ss_pred eeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEE
Confidence 0000000000000001112345566665555544432211 111223345688889888888888899999
Q ss_pred EEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC---------cCceE
Q 000101 1348 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---------SADTV 1418 (2239)
Q Consensus 1348 IFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq---------aADtV 1418 (2239)
|||..+...+.|...|...|+++..|+|.+...+|..+...|+. + -|+|+|+.+|+|+|+. ..++|
T Consensus 429 Ift~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g---~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--G---AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--C---eEEEEccccccccCCCCCccccccCCeEEE
Confidence 99999999999999999999999999999998887776666653 2 3799999999999999 88999
Q ss_pred EEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1419 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1419 IifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
|.||++-+.. +.|+.||++|.|....+..| ++.++.+.
T Consensus 504 it~~~ps~ri-d~qr~GRtGRqG~~G~s~~~--is~eD~l~ 541 (762)
T TIGR03714 504 GTERMENSRV-DLQLRGRSGRQGDPGSSQFF--VSLEDDLI 541 (762)
T ss_pred EecCCCCcHH-HHHhhhcccCCCCceeEEEE--Eccchhhh
Confidence 9999997765 49999999999987665433 34455444
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=192.30 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
|+.+.++|++.|.+.+|++||.|+..|+++|+|.++||||++ |++||||.+|++||+.++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQE-ISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHH-hCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
.||+++|.+|.+|+.|+++|...
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999863
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=228.90 Aligned_cols=314 Identities=16% Similarity=0.107 Sum_probs=193.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|+|.+++.- .+..+.+.|++..||+|||+++...+...+.. ..+.+|+|+|.. |+.++..+|.+|.. ++.
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 799999999963 22347889999999999999996555443321 346899999976 78889998888753 567
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhccc-cceE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQRR 1152 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~rR 1152 (2239)
+..+.|....... ....++|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..+. ..+.
T Consensus 98 v~~~~Gd~~~~~~-----~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qi 172 (720)
T PRK00254 98 VAMTTGDYDSTDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQI 172 (720)
T ss_pred EEEEeCCCCCchh-----hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcE
Confidence 7777776543322 124689999999987543211 1113578999999999954 3444555555553 3467
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
++||||.- +..++ .+|+....... ..+|.-+
T Consensus 173 I~lSATl~--n~~~l------------------a~wl~~~~~~~-------------------------~~rpv~l---- 203 (720)
T PRK00254 173 LGLSATVG--NAEEL------------------AEWLNAELVVS-------------------------DWRPVKL---- 203 (720)
T ss_pred EEEEccCC--CHHHH------------------HHHhCCccccC-------------------------CCCCCcc----
Confidence 88999952 23333 33332211000 0011000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1233 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
. ..+... ......... .. ..
T Consensus 204 ---------~--~~~~~~---------------~~~~~~~~~-~~---~~------------------------------ 223 (720)
T PRK00254 204 ---------R--KGVFYQ---------------GFLFWEDGK-IE---RF------------------------------ 223 (720)
T ss_pred ---------e--eeEecC---------------CeeeccCcc-hh---cc------------------------------
Confidence 0 000000 000000000 00 00
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH---------------------------
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--------------------------- 1365 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~--------------------------- 1365 (2239)
...+..++.++...+.++||||..+..+..+...|..
T Consensus 224 ----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 224 ----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred ----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 0001112222333578899999888766554433321
Q ss_pred ------cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-------cCCCC-CcchHH
Q 000101 1366 ------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNEE 1431 (2239)
Q Consensus 1366 ------rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi-------fDppW-NP~~dl 1431 (2239)
....+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. ++.++ ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123467799999999999999999975433 7999999999999999888884 33333 334789
Q ss_pred HhhhhhcccCCcceEEEEEE
Q 000101 1432 QAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrL 1451 (2239)
|++|||+|.|....-.++.+
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HhhhccCCCCcCCCceEEEE
Confidence 99999999886544334433
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=215.97 Aligned_cols=312 Identities=21% Similarity=0.255 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-H---HHHHHHHHHHHCCCCce
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-V---LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-L---LsQW~~Ef~KwaPslkv 1078 (2239)
|.|.+.+.-.+. +..-+.-.--|+|||-..+..++..+..+...-..+|+||+. | .+|.+.++.+++. +.+
T Consensus 110 PiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~v 184 (459)
T KOG0326|consen 110 PIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-IKV 184 (459)
T ss_pred Cccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-eEE
Confidence 566666665554 333233366899999988888887776666666789999976 3 3568888888875 888
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccccce-EE
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQR-RL 1153 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~r-RL 1153 (2239)
.+..|+...|..+... ....+++|.|++++..... .-.-.+..++|+|||+.+.. +...+.+.+.-++..+ .+
T Consensus 185 mvttGGT~lrDDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 185 MVTTGGTSLRDDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQIL 262 (459)
T ss_pred EEecCCcccccceeee--cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceee
Confidence 8888988877665422 3467899999999987633 22334678999999999975 3445566666665554 56
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
+.|||= | -..+.|.+ |.+++
T Consensus 263 lySATF----------------P---~tVk~Fm~-----------------------------------------~~l~k 282 (459)
T KOG0326|consen 263 LYSATF----------------P---LTVKGFMD-----------------------------------------RHLKK 282 (459)
T ss_pred EEeccc----------------c---hhHHHHHH-----------------------------------------HhccC
Confidence 669981 0 11233332 22222
Q ss_pred hhhc----CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1234 DVEG----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1234 DVek----dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
-.+- +|..+-. ..+|.
T Consensus 283 Py~INLM~eLtl~Gv-----------tQyYa------------------------------------------------- 302 (459)
T KOG0326|consen 283 PYEINLMEELTLKGV-----------TQYYA------------------------------------------------- 302 (459)
T ss_pred cceeehhhhhhhcch-----------hhhee-------------------------------------------------
Confidence 1100 0000000 00110
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
.+..+-|+.+|..++.++.- ...||||+.+...++|+..+...||.+..+|..|.++.|.+++.+|
T Consensus 303 ------------fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 303 ------------FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred ------------eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 12334578888888887753 3689999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
+. +.|+ .|++|+...+|||+|++++||+||.|-|+..|++|+||.+|.|.-. .-+.|++.+++..-
T Consensus 369 r~--G~cr-nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLityedrf~L 434 (459)
T KOG0326|consen 369 RN--GKCR-NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLITYEDRFNL 434 (459)
T ss_pred hc--cccc-eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEehhhhhhH
Confidence 96 4555 5888999999999999999999999999999999999999999653 34456666665443
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=215.50 Aligned_cols=311 Identities=25% Similarity=0.334 Sum_probs=212.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH-HHH------hCCCCCe-EEEechH-HHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL-MEF------KGNYGPH-LIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~L-ie~------k~~~GP~-LIVVP~S-LLsQW~~Ef~ 1070 (2239)
...|.|+.|+.-+++ +..-|--.-||+|||+.+...+..+ ++. ....||+ |||||.. |..|...-+.
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 345678888877765 4444544559999998876644332 221 2344665 9999988 5555544444
Q ss_pred HH--------CCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhh
Q 000101 1071 KW--------LPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RES 1138 (2239)
Q Consensus 1071 Kw--------aPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~S 1138 (2239)
.| +|.++..++.|+-+.+.++- ....+.+|+|.|+++++.-. ..+.-.-..|+.+|||+||.+ +..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~--~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLD--VVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHH--HHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchh
Confidence 44 37788888999888776653 34458899999999998653 334444578999999999954 445
Q ss_pred HHHHHhhccccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1139 VLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1139 KlskaLk~Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
.+...+..|+.++ -||+|||- |.-. ..|..
T Consensus 346 dir~iF~~FK~QRQTLLFSATM----------------P~KI---Q~FAk------------------------------ 376 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATM----------------PKKI---QNFAK------------------------------ 376 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccc----------------cHHH---HHHHH------------------------------
Confidence 5555566677766 57779882 1000 00100
Q ss_pred HHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niI 1297 (2239)
..+++|. ++.+- + .+ ..-++.+
T Consensus 377 --SALVKPv-------------------tvNVG----------------R---------AG------------AAsldVi 398 (610)
T KOG0341|consen 377 --SALVKPV-------------------TVNVG----------------R---------AG------------AASLDVI 398 (610)
T ss_pred --hhcccce-------------------EEecc----------------c---------cc------------ccchhHH
Confidence 0011110 00000 0 00 0000111
Q ss_pred HHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCC
Q 000101 1298 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1377 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGst 1377 (2239)
.++- .+..-.|+.. +|.-+..+.-.|||||.-..-.|.|.+||-.+|+..+.|||+-
T Consensus 399 QevE--------------------yVkqEaKiVy---lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGK 455 (610)
T KOG0341|consen 399 QEVE--------------------YVKQEAKIVY---LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGK 455 (610)
T ss_pred HHHH--------------------HHHhhhhhhh---HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCc
Confidence 1110 1112224333 3444566788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.+++|...|+.|+.+..+ +|++|++++-|||++++.+||+||.|-.-.+|.+||||++|-|.+.-.+.|
T Consensus 456 DQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred chhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 999999999999987766 899999999999999999999999999999999999999999987644433
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=219.03 Aligned_cols=318 Identities=19% Similarity=0.271 Sum_probs=224.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---CC
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---SV 1076 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---sl 1076 (2239)
-.+.|..++..... +..-|+-.--|+|||+++..++..-+......-..|||+|+. +..|....|.+.+| ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 34678888876665 666788899999999987666555444444555679999998 77889999999987 57
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccC---hhhHHHHHhhccccc-
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lka~- 1150 (2239)
++-+|+|+.+..... .+....+|+|.|+++|... ...+...+.+++|||||+.+.. ....+..++..++..
T Consensus 124 ~csvfIGGT~~~~d~---~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r 200 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDL---IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR 200 (980)
T ss_pred ceEEEecCchhhhhh---hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh
Confidence 899999987654333 4445678999999999765 3567777899999999999965 344566777777654
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh-hHHhh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFMLR 1229 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr-PFmLR 1229 (2239)
..++.|||=-+ +|. .+|.++++ |.++|
T Consensus 201 Qv~a~SATYp~-nLd---------------------------------------------------n~Lsk~mrdp~lVr 228 (980)
T KOG4284|consen 201 QVAAFSATYPR-NLD---------------------------------------------------NLLSKFMRDPALVR 228 (980)
T ss_pred eeeEEeccCch-hHH---------------------------------------------------HHHHHHhcccceee
Confidence 47778999311 111 12333333 22222
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
-...++. -+.-+...+..|...- ....+|
T Consensus 229 ~n~~d~~-L~GikQyv~~~~s~nn------------------------------------------sveemr-------- 257 (980)
T KOG4284|consen 229 FNADDVQ-LFGIKQYVVAKCSPNN------------------------------------------SVEEMR-------- 257 (980)
T ss_pred cccCCce-eechhheeeeccCCcc------------------------------------------hHHHHH--------
Confidence 2222211 0111111111111000 000000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
-|+..|..++..+- -...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.+
T Consensus 258 -----------------lklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~l 318 (980)
T KOG4284|consen 258 -----------------LKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQL 318 (980)
T ss_pred -----------------HHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHh
Confidence 15566666665543 34689999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+. -.++ ||+||+..++|||-..++.||++|+|-|-..|.||||||+|.|-.. ..|.++
T Consensus 319 r~--f~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~ 376 (980)
T KOG4284|consen 319 RA--FRVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLL 376 (980)
T ss_pred hh--ceEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEe
Confidence 85 3344 6999999999999999999999999999999999999999999654 334444
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-17 Score=208.03 Aligned_cols=413 Identities=17% Similarity=0.205 Sum_probs=226.8
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHH---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVN---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQ---W~~Ef~Kwa 1073 (2239)
+...+|-|+.|+--++. |.|.-..||.|||++++..+..... ....++||+|+.. ..+ |...|.+++
T Consensus 101 g~~p~~VQ~~~~~~ll~------G~Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS------GRLAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC------CCeeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44566778888776664 3388899999999998776664432 2347899999984 444 555555554
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhh--------------------------cccCCceEE
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSK--------------------------LSKVDWKYI 1125 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~--------------------------L~kikWd~V 1125 (2239)
++.+.++.|+.....+ ......+|+++|-..|.-| ++. +....+.++
T Consensus 172 -Glsv~~i~gg~~~~~r----~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 172 -GLTVGCVVEDQSPDER----RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred -CCEEEEEeCCCCHHHH----HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 4666666665332111 1223679999997665332 111 112468999
Q ss_pred EecccccccChhhHHHHHhhccccceEEEecCCCCCCCHHHHHHHH----hhhcCcc-cC----------C--h-HHHHh
Q 000101 1126 IIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL----NLLLPEV-FD----------N--R-KAFHD 1187 (2239)
Q Consensus 1126 IIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLL----nFLlP~i-F~----------s--~-k~F~e 1187 (2239)
||||++.+. +.. +..-|++||.+-.....++|... .-|..+. |. + . ....+
T Consensus 247 IvDEvDSiL---------iDe--artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~ 315 (656)
T PRK12898 247 IVDEADSVL---------IDE--ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAE 315 (656)
T ss_pred Eeeccccee---------ecc--CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHH
Confidence 999999874 222 23347788855333233444333 2232221 10 0 0 00001
Q ss_pred hhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHH
Q 000101 1188 WFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIY 1259 (2239)
Q Consensus 1188 ~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY 1259 (2239)
.|.. +. ..|.. .....+.+...|+. +++.+-+.-+.. +....+| .+.| .+..-+.
T Consensus 316 ~~~~-l~---------~~~~~---~~~~~~~i~~Al~A~~l~~~d~dYiV~---d~~V~iv-D~~TGR~~~gr~w~~GLh 378 (656)
T PRK12898 316 LAES-LP---------PAWRG---AVRREELVRQALSALHLFRRDEHYIVR---DGKVVIV-DEFTGRVMPDRSWEDGLH 378 (656)
T ss_pred HhCc-ch---------hhccc---chHHHHHHHHHHHHHHHHhcCCceEEE---CCeEEEE-ECCCCeECCCCCcChHHH
Confidence 1100 00 00000 00012222233332 233333322221 1222222 2332 2344444
Q ss_pred HHHHHhcCcccCchhHH------hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc----chh-hHhhcccH
Q 000101 1260 DWIKATGTLRVDPEDEK------RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL----SKD-FLVKSCGK 1328 (2239)
Q Consensus 1260 ~~I~~~~~l~l~~~~ek------~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~----s~d-~Li~~SGK 1328 (2239)
+.|.....+.+...... ....+......+....+......|.++.+-..+..|..... ... .......|
T Consensus 379 QaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K 458 (656)
T PRK12898 379 QMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAK 458 (656)
T ss_pred HHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHH
Confidence 54544333322221110 00000000000000111122344555444333322221111 111 12233458
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000101 1329 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1329 LelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGe 1408 (2239)
+..|..++..+...+..|||||..+...+.|...|...|+++..|||... +|+..+..|....+. |||+|+++|+
T Consensus 459 ~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdmAgR 533 (656)
T PRK12898 459 WAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNMAGR 533 (656)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccchhc
Confidence 88899988887777889999999999999999999999999999999865 555666666543333 8999999999
Q ss_pred ccCCC---cCc-----eEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1409 GLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1409 GLNLq---aAD-----tVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
|+|+. .+. +||+||.|-|...|.|++||++|.|....+..| ++.++.+.
T Consensus 534 GtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--is~eD~l~ 590 (656)
T PRK12898 534 GTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--LSLEDDLL 590 (656)
T ss_pred ccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--echhHHHH
Confidence 99998 454 999999999999999999999999977555333 34444443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=214.52 Aligned_cols=307 Identities=19% Similarity=0.207 Sum_probs=228.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|+-|.++++.+++ +.+.|....||.||++.+-.... + ..|.+|||.|. +|+...+..+.... +.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAl--l----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPAL--L----LEGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHH--h----cCCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 688899999999987 78899999999999987654332 2 25799999995 58888888887754 444
Q ss_pred EEEec--chhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccCh-------hhHHHHHhhcc
Q 000101 1079 IYYVG--AKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR-------ESVLARDLDRY 1147 (2239)
Q Consensus 1079 vvy~G--skd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~-------~SKlskaLk~L 1147 (2239)
....+ +.+++......+..+..+++..++|.+... ...|...+..+++|||||.+-.. ...+......|
T Consensus 85 ~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~ 164 (590)
T COG0514 85 AYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL 164 (590)
T ss_pred ehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC
Confidence 44433 467778888888888899999999999865 45677889999999999998543 33455555566
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
...-+++||||--.....|+...|+.-.+.+|.. .|..|-
T Consensus 165 ~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sfdRpN---------------------------------- 204 (590)
T COG0514 165 PNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SFDRPN---------------------------------- 204 (590)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cCCCch----------------------------------
Confidence 7667999999965555666666555544433211 111110
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
-.|.....
T Consensus 205 -----------------------------i~~~v~~~------------------------------------------- 212 (590)
T COG0514 205 -----------------------------LALKVVEK------------------------------------------- 212 (590)
T ss_pred -----------------------------hhhhhhhc-------------------------------------------
Confidence 00000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
..++..++ -+.......+...||||..+...+.+..+|...|+....+||++..++|..+-+
T Consensus 213 -----------------~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 213 -----------------GEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred -----------------ccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 00000111 011111223455899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+|..++.. ++++|.|.|.|||-+++..|||||.|-+...|.|=+|||+|-|...++.+++-
T Consensus 275 ~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 275 AFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred HHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 99976655 79999999999999999999999999999999999999999998888766653
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=207.20 Aligned_cols=314 Identities=22% Similarity=0.276 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HH---HHhCCCCCeE-EEechH-HHHHHHHHHHHHCC-
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LM---EFKGNYGPHL-IIVPNA-VLVNWKSELHKWLP- 1074 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Li---e~k~~~GP~L-IVVP~S-LLsQW~~Ef~KwaP- 1074 (2239)
.|.|-.+|.-.++ +...|--.-+|+|||-.+|-.+.. .+ +.+...+|++ |+||+. +..|...|.++|+.
T Consensus 247 tpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 247 TPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred Ccccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 3445555554444 444444455999999777664433 22 2244667874 556876 88999999999964
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhcccc
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC 1149 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka 1149 (2239)
+++++.++|+.....+.-. +. ....+||+|+++|+... ..+.-.+..|+|||||.+|.. ....+..+..+++.
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~-Lk-~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp 400 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKE-LK-EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP 400 (731)
T ss_pred ccceEEEeecCCcHHHHHHh-hh-cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC
Confidence 5677666666554444322 33 67899999999998653 234445788999999999964 34445555556766
Q ss_pred ce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1150 QR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1150 ~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
++ .|++++|- .. ++.++
T Consensus 401 drQtllFsaTf--------------------------~~------------------------------kIe~l------ 418 (731)
T KOG0339|consen 401 DRQTLLFSATF--------------------------KK------------------------------KIEKL------ 418 (731)
T ss_pred cceEEEeeccc--------------------------hH------------------------------HHHHH------
Confidence 66 57778881 10 01111
Q ss_pred hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1229 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
..+++ -+.+.++ ...+... +.-|++.-.+|-.
T Consensus 419 ---ard~L---~dpVrvV-qg~vgea---------------------------------------n~dITQ~V~V~~s-- 450 (731)
T KOG0339|consen 419 ---ARDIL---SDPVRVV-QGEVGEA---------------------------------------NEDITQTVSVCPS-- 450 (731)
T ss_pred ---HHHHh---cCCeeEE-Eeehhcc---------------------------------------ccchhheeeeccC--
Confidence 11111 1111111 1110000 0011111112211
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~ 1388 (2239)
...|+..|.+-|.++... .+||||..-....+.|...|..++|++..+||++.+.+|.++|.+
T Consensus 451 ----------------~~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 451 ----------------EEKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred ----------------cHHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 123777777777776544 489999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|+..... +|+.|+++.+||++....|||+||.--+-..+.|||||++|.|.+. ..|.|++
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kG--vayTlvT 573 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKG--VAYTLVT 573 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccc--eeeEEec
Confidence 9975555 7999999999999999999999999999999999999999999773 2455554
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-17 Score=212.69 Aligned_cols=410 Identities=14% Similarity=0.184 Sum_probs=228.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHH---HHHHHHHHCCCC
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVN---WKSELHKWLPSV 1076 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQ---W~~Ef~KwaPsl 1076 (2239)
++||+...+-.++- ..|.|....||.|||++++..+..... ....++||+|+.. ..+ |...|.+|+ ++
T Consensus 77 ~~p~~vQl~~~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 77 MRPYDVQLIGALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CCCchHHHHhHHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 55554444444443 234488999999999988766543222 2347899999984 444 555565554 56
Q ss_pred ceEEEecchh-hHHHHHHHHhhcCccEEEEehhHHHH----h-h----hhcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1077 SCIYYVGAKD-QRSRLFSQVAALKFNVLVTTYEFIMY----D-R----SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1077 kvvvy~Gskd-~Rk~l~~~i~~~kfdVVITTYE~L~k----D-~----s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
.+.++.|... ...+. .....+|+++|+..+.- + . ..+....+.++||||+|+|. +..
T Consensus 149 ~v~~i~g~~~~~~~r~----~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL---------iDe 215 (790)
T PRK09200 149 TVGLNFSDIDDASEKK----AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL---------LDE 215 (790)
T ss_pred eEEEEeCCCCcHHHHH----HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce---------ecc
Confidence 7777766543 21111 12357999999877632 2 1 11233478999999999984 121
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhh----cCcc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLL----LPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFL----lP~i-F~----------s~---k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
+..-|++||.+-.. ..+|...+.+ .++. |. +. ....+.|..+ ..+
T Consensus 216 --a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~-----------~l~-- 278 (790)
T PRK09200 216 --AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID-----------NLY-- 278 (790)
T ss_pred --CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc-----------ccc--
Confidence 12236777654222 2355444322 2210 00 00 0011111100 000
Q ss_pred HHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEEe------ccCHHHHHHHHHHHHhcCcccCchhHHhhhhc
Q 000101 1209 TEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1281 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~c------~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k 1281 (2239)
.......++.+...|+. +++.+-+.-+.. +....+|.- +-..+..-+.+.+.....+.+..... .+..
T Consensus 279 ~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~---~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~--t~a~ 353 (790)
T PRK09200 279 SLEHQVLYRHIILALRAHVLFKRDVDYIVY---DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENR--TMAS 353 (790)
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCcEEEE---CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCce--ehhh
Confidence 00011112233333332 233333322221 111112111 11123344444444433332222111 0000
Q ss_pred Ch-hhHHHHHHHH-------HHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEE
Q 000101 1282 NP-IYQAKVYKTL-------NNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1348 (2239)
Q Consensus 1282 ~~-~~~~k~~ksL-------~niImqLRKiCnHP~L~~p~~~~-----~s~d~Li~~SGKLelLdrIL~kLkatGhKVLI 1348 (2239)
-. ..--+.|..+ ...-..|.++-+-+.+..|.... ...........|+..|...+......+.+|||
T Consensus 354 It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLI 433 (790)
T PRK09200 354 ITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLI 433 (790)
T ss_pred hhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00 0000001110 11123455555555444433221 11112234456888888888887778999999
Q ss_pred EEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCC---CcCc-----eEEE
Q 000101 1349 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL---QSAD-----TVII 1420 (2239)
Q Consensus 1349 FSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNL---qaAD-----tVIi 1420 (2239)
||......+.|...|...|+++..|||.+...++..+...|.. +. |+|+|+.+|+|+|+ +.+. +||+
T Consensus 434 f~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI~ 508 (790)
T PRK09200 434 GTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATNMAGRGTDIKLGEGVHELGGLAVIG 508 (790)
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEccchhcCcCCCcccccccccCcEEEe
Confidence 9999999999999999999999999999988887777766653 23 89999999999999 5787 9999
Q ss_pred cCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1421 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1421 fDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
||.|-|+..|.|+.||++|.|....+..| ++.++.+..
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--is~eD~l~~ 546 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFF--ISLEDDLLK 546 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEE--EcchHHHHH
Confidence 99999999999999999999988655333 344555543
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-19 Score=205.85 Aligned_cols=337 Identities=19% Similarity=0.259 Sum_probs=216.3
Q ss_pred CCCCchhhhhhhhhHhhhhhhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-----HH
Q 000101 969 PRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-----YL 1043 (2239)
Q Consensus 969 p~~~s~~~kyy~lah~i~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa-----~L 1043 (2239)
|...+.+.+.|.--..+-|.+.+. .| .+..|.|-.+-.-++ .+...|-...||+|||+..+..-. ..
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~--GF--qKPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp 286 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKT--GF--QKPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQP 286 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhc--cC--CCCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccc
Confidence 344455555554333344444321 01 134455555432233 366678888999999988765321 11
Q ss_pred HHHhC-CCCCeEEEechH-HHHHHHHHHHHHC-CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcc
Q 000101 1044 MEFKG-NYGPHLIIVPNA-VLVNWKSELHKWL-PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLS 1118 (2239)
Q Consensus 1044 ie~k~-~~GP~LIVVP~S-LLsQW~~Ef~Kwa-Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~ 1118 (2239)
..... ....+||++|+. |..+...|..++- ..++.++++|.... ......+ ..+..++|+|+..|.+.. ..+.
T Consensus 287 ~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR-~eqie~l-krgveiiiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 287 KRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNR-NEQIEDL-KRGVEIIIATPGRLNDLQMDNVIN 364 (629)
T ss_pred hhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCc-hhHHHHH-hcCceEEeeCCchHhhhhhcCeee
Confidence 11112 223468888987 6677777877763 44544444443332 2222222 357899999999997652 3444
Q ss_pred cCCceEEEecccccccC--hhhHHHHHhhccccceEEEe-cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCccc
Q 000101 1119 KVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQRRLLL-TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK 1195 (2239)
Q Consensus 1119 kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~rRLLL-TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~ 1195 (2239)
-....|+|||||++|.. +.-.+.+.|..++.++-.+| ||| .
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSAT-W----------------------------------- 408 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSAT-W----------------------------------- 408 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeeccc-C-----------------------------------
Confidence 45688999999999965 66688889999988887666 565 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhH
Q 000101 1196 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1275 (2239)
Q Consensus 1196 ~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~e 1275 (2239)
|-.+||+.....++ +...++=.+.|.+
T Consensus 409 -----------------------------P~~VrrLa~sY~Ke--p~~v~vGsLdL~a---------------------- 435 (629)
T KOG0336|consen 409 -----------------------------PEGVRRLAQSYLKE--PMIVYVGSLDLVA---------------------- 435 (629)
T ss_pred -----------------------------chHHHHHHHHhhhC--ceEEEecccceee----------------------
Confidence 01122222211110 0001110000000
Q ss_pred HhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchh-hHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH
Q 000101 1276 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK 1354 (2239)
Q Consensus 1276 k~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d-~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~ 1354 (2239)
| |. .... .+...+.|+..+..++.. .....||||||....
T Consensus 436 ----------------------------~-~s---------VkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 436 ----------------------------V-KS---------VKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKV 476 (629)
T ss_pred ----------------------------e-ee---------eeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechh
Confidence 0 00 0000 011123355555554444 346789999999999
Q ss_pred HHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhh
Q 000101 1355 LLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1434 (2239)
Q Consensus 1355 ~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAi 1434 (2239)
++|-|..-|...||....|||.-.+.+|+.+++.|+++.-. ||++|+.+++|||++++.+|++||.|-|-..|+||+
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRv 553 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRV 553 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHh
Confidence 99999999999999999999999999999999999975443 799999999999999999999999999999999999
Q ss_pred hhhcccCCcceE
Q 000101 1435 ARAHRIGQKREV 1446 (2239)
Q Consensus 1435 GRAhRIGQkKeV 1446 (2239)
||++|.|.+...
T Consensus 554 GrtGRaGr~G~s 565 (629)
T KOG0336|consen 554 GRTGRAGRTGTS 565 (629)
T ss_pred cccccCCCCcce
Confidence 999999987653
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-18 Score=228.37 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=192.1
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
|.+++++|..++..++. +.+.++...||+|||..++.++.++. .....+|||||+. |+.||...|.+++...
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45899999998877775 77889999999999964443333332 2346799999987 8899999999998643
Q ss_pred --ceEEEecc----hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh-------------
Q 000101 1077 --SCIYYVGA----KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE------------- 1137 (2239)
Q Consensus 1077 --kvvvy~Gs----kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~------------- 1137 (2239)
.+.+..|. ...+......+..+.++|+|+|++++.+....+...++++|||||||++....
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 33333332 23344444455666799999999999988777777779999999999985321
Q ss_pred -hHHHHHhhccc-------------------------cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC
Q 000101 1138 -SVLARDLDRYR-------------------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191 (2239)
Q Consensus 1138 -SKlskaLk~Lk-------------------------a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k 1191 (2239)
..+..++..++ ....+++|||.-...+... + |
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~--l--------------~------ 288 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK--L--------------F------ 288 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH--H--------------h------
Confidence 11222222221 1224445666321111000 0 0
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccC
Q 000101 1192 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1271 (2239)
Q Consensus 1192 Pf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~ 1271 (2239)
..++. | ++...-.
T Consensus 289 ----------------------------~~ll~-~-------~v~~~~~------------------------------- 301 (1176)
T PRK09401 289 ----------------------------RELLG-F-------EVGSPVF------------------------------- 301 (1176)
T ss_pred ----------------------------hccce-E-------EecCccc-------------------------------
Confidence 00000 0 0000000
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEc
Q 000101 1272 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 1351 (2239)
Q Consensus 1272 ~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ 1351 (2239)
.++.+. |-| +....|...|..++..+ +..+||||+
T Consensus 302 ---------------------------~~rnI~-~~y--------------i~~~~k~~~L~~ll~~l---~~~~LIFv~ 336 (1176)
T PRK09401 302 ---------------------------YLRNIV-DSY--------------IVDEDSVEKLVELVKRL---GDGGLIFVP 336 (1176)
T ss_pred ---------------------------ccCCce-EEE--------------EEcccHHHHHHHHHHhc---CCCEEEEEe
Confidence 000000 000 00002555566666543 468999999
Q ss_pred cHHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCC
Q 000101 1352 MTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDP 1423 (2239)
Q Consensus 1352 ~t~~---LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDp 1423 (2239)
.... ++.|.++|...|+++..+||++ .+.+++|.+++. . +||+ |+++++||||+. +.+|||||.
T Consensus 337 t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~--~-VLVatas~tdv~aRGIDiP~~IryVI~y~v 408 (1176)
T PRK09401 337 SDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEV--D-VLVGVASYYGVLVRGIDLPERIRYAIFYGV 408 (1176)
T ss_pred cccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC--C-EEEEecCCCCceeecCCCCcceeEEEEeCC
Confidence 8666 9999999999999999999999 234699997544 4 4555 799999999999 899999999
Q ss_pred CC------CcchHHHhhhhhcccC
Q 000101 1424 DP------NPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1424 pW------NP~~dlQAiGRAhRIG 1441 (2239)
|- ....+.+++||+..+-
T Consensus 409 P~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 409 PKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCEEEeccccccCHHHHHHHHhhc
Confidence 98 7788999999997554
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-18 Score=214.71 Aligned_cols=358 Identities=18% Similarity=0.214 Sum_probs=228.6
Q ss_pred ccCCCChHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHC
Q 000101 996 LRAGTLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWL 1073 (2239)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~Kwa 1073 (2239)
+....+|+||+.+++.++..+.++.+ .||++.||+|||.+||++|..|+. .+..+++|+++- ++|+.|-..+|..|.
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhC
Confidence 34568999999999999998876544 689999999999999999999986 566789999995 679999999999999
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-------hcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
|....+....... ....+.|+|+||.++..... .+..-.||+||||||||- ..+.++.+..
T Consensus 240 P~~~~~n~i~~~~---------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~d 307 (875)
T COG4096 240 PFGTKMNKIEDKK---------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSILD 307 (875)
T ss_pred CCccceeeeeccc---------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHHH
Confidence 9876655443321 12267999999999986532 344457999999999994 2344456666
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
|-...+++|||||-..--..-+.+|| ..|...+. |...+.
T Consensus 308 YFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys---------------------leeAV~-- 347 (875)
T COG4096 308 YFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS---------------------LEEAVE-- 347 (875)
T ss_pred HHHHHHHhhccCcccccccccccccC-----------------CCcceeec---------------------HHHHhh--
Confidence 66677888899996532111122111 22222110 000000
Q ss_pred HhhHhHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1227 MLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
.-++ .|.+. ...++.....+- |. ...+....... ..+
T Consensus 348 ------DGfL--vpy~vi~i~~~~~~~G~~---~~-----------~~serek~~g~--------------------~i~ 385 (875)
T COG4096 348 ------DGFL--VPYKVIRIDTDFDLDGWK---PD-----------AGSEREKLQGE--------------------AID 385 (875)
T ss_pred ------cccc--CCCCceEEeeeccccCcC---cC-----------ccchhhhhhcc--------------------ccC
Confidence 0000 12221 112222111100 00 00000000000 000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---C---CeEEEEEccHHHHHHHHHHHHHc----C-CeEEeec
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR----Q-LVYRRID 1374 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkat---G---hKVLIFSQ~t~~LDILed~L~~r----G-iky~RLD 1374 (2239)
-. ...++....+..+..-.....+++.|.++... | .|.||||....+++.|...|... + --+..|+
T Consensus 386 ~d---d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 386 ED---DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred cc---cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 00000001111111223445555666655444 3 58999999999999999999765 2 2356788
Q ss_pred CCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc-------CCcce-E
Q 000101 1375 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-------GQKRE-V 1446 (2239)
Q Consensus 1375 Gsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI-------GQkKe-V 1446 (2239)
|... .=+..|+.|-. +..+..|.+|.+...+|||.+.|-.+||+-.--+-..|.|-+||+-|+ ||.|. +
T Consensus 463 ~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F 539 (875)
T COG4096 463 GDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFF 539 (875)
T ss_pred ccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeE
Confidence 8765 44567888876 567778999999999999999999999999999999999999999997 34443 6
Q ss_pred EEEEEehh
Q 000101 1447 KVIYMEAV 1454 (2239)
Q Consensus 1447 ~VyrLvaV 1454 (2239)
.|+.++-+
T Consensus 540 ~ifDf~~~ 547 (875)
T COG4096 540 TIFDFVDN 547 (875)
T ss_pred EEEEhhhh
Confidence 77777553
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=227.40 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=84.8
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC---------------------------------CeEEeecCCCCHHHHHHHHHH
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 1388 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG---------------------------------iky~RLDGsts~eeRqeiL~~ 1388 (2239)
.+.++||||+.+..++.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886531 124568899999999999999
Q ss_pred HhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1389 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1389 FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
|+++... +|++|.++++|||+..+|+||+|++|.+...++||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9975443 799999999999999999999999999999999999999985
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=212.42 Aligned_cols=318 Identities=21% Similarity=0.185 Sum_probs=216.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CC---CCeEEEechHHHHH-HHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NY---GPHLIIVPNAVLVN-WKSELHKW 1072 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~--~~---GP~LIVVP~SLLsQ-W~~Ef~Kw 1072 (2239)
.+|+|.|..++..+.. +.|.|+...||+|||.+|+..+...+...+ .. -.+|-|.|...|.+ ...-+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3799999999987775 999999999999999999887776554442 11 24799999885544 66667766
Q ss_pred CC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh------hhhcccCCceEEEecccccccC--hhhHHHH
Q 000101 1073 LP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD--RESVLAR 1142 (2239)
Q Consensus 1073 aP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrIKN--~~SKlsk 1142 (2239)
.. ++.+-+-+|......+ .......++|+|||++++.-. +..|. +..+|||||.|.+.+ ..+.++-
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Lsl 172 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--QKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLAL 172 (814)
T ss_pred HHHcCCccceecCCCChHHh--hhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhhh
Confidence 53 4556666665443222 225566899999999998643 33444 456799999999975 4556666
Q ss_pred Hhhcc---c-cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000101 1143 DLDRY---R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218 (2239)
Q Consensus 1143 aLk~L---k-a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~R 1218 (2239)
.|.++ . .-.|++||||= .++.+ +..||.+.-. +
T Consensus 173 ~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~------------~-------------------------- 209 (814)
T COG1201 173 SLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD------------P-------------------------- 209 (814)
T ss_pred hHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC------------c--------------------------
Confidence 66655 2 34699999993 23222 2333321100 0
Q ss_pred HHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000101 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1298 (2239)
Q Consensus 1219 LhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niIm 1298 (2239)
...|......+..+.+.++-......
T Consensus 210 -------------~~Iv~~~~~k~~~i~v~~p~~~~~~~----------------------------------------- 235 (814)
T COG1201 210 -------------CEIVDVSAAKKLEIKVISPVEDLIYD----------------------------------------- 235 (814)
T ss_pred -------------eEEEEcccCCcceEEEEecCCccccc-----------------------------------------
Confidence 00000011111111111110000000
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC-CeEEeecCCC
Q 000101 1299 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGTT 1377 (2239)
Q Consensus 1299 qLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG-iky~RLDGst 1377 (2239)
. .-...+...+.++..+...+|||++.+.+.+.+...|...+ ..+..-||+.
T Consensus 236 ------~---------------------~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSl 288 (814)
T COG1201 236 ------E---------------------ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSL 288 (814)
T ss_pred ------c---------------------chhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccc
Confidence 0 00111233344445556689999999999999999999887 8888999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhh-cccCCcceEEEEEE
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIYM 1451 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRA-hRIGQkKeV~VyrL 1451 (2239)
+.+.|..+-++|.+++-+ .++||....+|||+-.+|.||+|.+|-.-...+||+||+ ||+|....-.|+-.
T Consensus 289 Sre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 289 SRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred cHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 999999999999986544 688999999999999999999999999999999999999 67787655445444
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-17 Score=210.04 Aligned_cols=371 Identities=15% Similarity=0.104 Sum_probs=206.4
Q ss_pred CCChHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
.-.|+||..+|+.++....+ ..+|||.+.+|+|||++++.++..++. ......+|||||.. |..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999877654 357999999999999999999888774 34456799999965 99999999999
Q ss_pred HCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh-hhccc----CCceEEEecccccccChhhHHHHHhh-
Q 000101 1072 WLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR-SKLSK----VDWKYIIIDEAQRMKDRESVLARDLD- 1145 (2239)
Q Consensus 1072 waPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~-s~L~k----ikWd~VIIDEAHrIKN~~SKlskaLk- 1145 (2239)
+.+... .-.++ ...+...+......|+|||++.+.+.. ..+.. ....+||+|||||... ....+.|.
T Consensus 316 ~~~~~~--~~~~s---~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~~ 388 (667)
T TIGR00348 316 LQKDCA--ERIES---IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLKK 388 (667)
T ss_pred hCCCCC--cccCC---HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHHh
Confidence 875311 11122 222323344445789999999997521 11111 1234899999999742 33445554
Q ss_pred ccccceEEEecCCCCCCCHHHHHHHHhhhcCcc---cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV---FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~i---F~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
.|+...+|+|||||+...-.+-+..+....-.+ +.-.+...+-+..|+.......
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~---------------------- 446 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLP---------------------- 446 (667)
T ss_pred hCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecch----------------------
Confidence 567788999999998642111111111100000 0111112222222221111000
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHH-HHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ-SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Q-r~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
+. .++... ...++.........+.. . ....+......+.
T Consensus 447 -----------~~--------------~~~~~~l~~~~~~~~~~~~~~~~~-~--------------~~~~l~~~~~~~~ 486 (667)
T TIGR00348 447 -----------ED--------------HLDRKKLDAFFDEIFELLPERIRE-I--------------TKESLKEKLQKTK 486 (667)
T ss_pred -----------hh--------------ccChHHHHHHHHHHHHhhhccccH-H--------------HHHHHHHHHHHHH
Confidence 00 000000 00011000000000000 0 0000111111111
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-----CCeEEeecCC
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGT 1376 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-----Giky~RLDGs 1376 (2239)
.+..++.. +....+ .++..........+.|.+|||..+..+..+.+.|... +...+.++|+
T Consensus 487 ~~~~~~~~-------------~~~ia~-~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~ 552 (667)
T TIGR00348 487 KILFNEDR-------------LESIAK-DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGK 552 (667)
T ss_pred hhhcChHH-------------HHHHHH-HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCC
Confidence 11111100 000000 0011111111222579999999999988887777543 3455677776
Q ss_pred CCHH---------------------HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhh
Q 000101 1377 TSLE---------------------DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1435 (2239)
Q Consensus 1377 ts~e---------------------eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiG 1435 (2239)
...+ ....++++|..+ ..+. |||+++...+|.|.+.++++++.-|--+ +.++|++|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~ 629 (667)
T TIGR00348 553 ESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIA 629 (667)
T ss_pred ccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHH
Confidence 5433 224789999863 3344 5777799999999999999999888765 56899999
Q ss_pred hhccc-CC-cceEEEEEEehhhh
Q 000101 1436 RAHRI-GQ-KREVKVIYMEAVVD 1456 (2239)
Q Consensus 1436 RAhRI-GQ-kKeV~VyrLvaVEE 1456 (2239)
|+.|+ +. |....|+.++.+.+
T Consensus 630 R~nR~~~~~K~~g~IvDy~g~~~ 652 (667)
T TIGR00348 630 RTNRIDGKDKTFGLIVDYRGLEK 652 (667)
T ss_pred HhccccCCCCCCEEEEECcChHH
Confidence 99995 43 34568888865433
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=180.48 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc---CCCCCHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELVSDVQ 2010 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~~D~q 2010 (2239)
|++.-+++|..|+.+|.. +..+..|+..+.+ ++|+||++ |++||||.+|++||+. +.|.++.+|..||.
T Consensus 1 ~~~~~~~~c~~il~~l~~------~~~s~~F~~pv~~-~~p~Y~~i-I~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~ 72 (109)
T cd05502 1 LSPIDQRKCERLLLELYC------HELSLPFHEPVSP-SVPNYYKI-IKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVR 72 (109)
T ss_pred CCHHHHHHHHHHHHHHHh------CCCChhhcCCCCC-CCCCHHHH-CCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 567888999999999954 4789999999988 99999999 9999999999999998 69999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2011 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2011 LM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
|||.||+.||+++|.++.+|..|+++|..+|+..|||
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999997
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=212.71 Aligned_cols=413 Identities=14% Similarity=0.147 Sum_probs=223.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CCc
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SVS 1077 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--slk 1077 (2239)
++||....+-.++- +.|.|.-..||.|||++++..+. +.... ...++||+|+. |..+-..++..++. ++.
T Consensus 55 ~~p~~vQlig~~~l----~~G~Iaem~TGeGKTLva~lpa~-l~aL~--G~~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 55 MRPFDVQLIGGIAL----HKGKIAEMKTGEGKTLTATLPAY-LNALT--GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred CCccchHHhhhhhh----cCCceeeecCCCccHHHHHHHHH-HHHHh--CCCEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 66665555445543 23447779999999998765442 22222 23689999998 55554444444443 366
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH----hh-----hhcccCCceEEEecccccccChhhHHHHHhhcc-
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY----DR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1147 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k----D~-----s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L- 1147 (2239)
+.+..|+.....+ ......+|+++|+..|-. +. ..+....+.++||||+|++.=......-.+..-
T Consensus 128 v~~i~g~~~~~~r----~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 128 VGLILSGMSPEER----REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred EEEEeCCCCHHHH----HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 6666665332211 122357999999997722 21 123345789999999999853222111111110
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhc----CcccCCh---HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLL----PEVFDNR---KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLl----P~iF~s~---k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
.....+.+++||+...+.+= .+|.. ..++-+. ....+.|..+ . +.........+.+.
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~---~dy~~de~~k~v~Lt~~G~~~~e~~~~~~--~-----------ly~~~~~~~~~~i~ 267 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKE---VHYEVDEKNRAVLLTEKGIKKAEDLLGVD--N-----------LYDLENSPLIHYIN 267 (745)
T ss_pred CCchHHHHHHHHHHHhhccC---CCeEEecCCCceeECHHHHHHHHHHcCCc--c-----------ccChhhhHHHHHHH
Confidence 11122333444433322200 00100 0000000 0111111100 0 00000111222333
Q ss_pred Hhhhh-HHhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh------hhhcChhhH
Q 000101 1221 QILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR------RVQKNPIYQ 1286 (2239)
Q Consensus 1221 klLrP-FmLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~------~l~k~~~~~ 1286 (2239)
..|+. +++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+....... ...+.....
T Consensus 268 ~Al~A~~l~~~d~dYiV~---d~~V~ivD-~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl 343 (745)
T TIGR00963 268 NALKAKELFEKDVDYIVR---DGEVVIVD-EFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKL 343 (745)
T ss_pred HHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchh
Confidence 33333 233333332221 11112221 111 2333444444433322222111100 000000000
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccc----chhhH-hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHH
Q 000101 1287 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDL----SKDFL-VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1361 (2239)
Q Consensus 1287 ~k~~ksL~niImqLRKiCnHP~L~~p~~~~~----s~d~L-i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed 1361 (2239)
.+...........|+++-+-+.+..|..... ..+.+ .....|+..+...+.++...|..|||||......+.|..
T Consensus 344 ~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~ 423 (745)
T TIGR00963 344 SGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSN 423 (745)
T ss_pred hccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHH
Confidence 0000011122345677766665544433221 11112 223358888888787888899999999999999999999
Q ss_pred HHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc-------CceEEEcCCCCCcchHHHhh
Q 000101 1362 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-------ADTVIIYDPDPNPKNEEQAV 1434 (2239)
Q Consensus 1362 ~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa-------ADtVIifDppWNP~~dlQAi 1434 (2239)
+|...|+++..|+|. ..+|+..|..|....+ .|+|+|+.+|+|+|+.. ..+||+++.|-|...+.|+.
T Consensus 424 ~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~ 498 (745)
T TIGR00963 424 LLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLR 498 (745)
T ss_pred HHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHh
Confidence 999999999999998 7799999999975434 38999999999999998 66999999999999999999
Q ss_pred hhhcccCCcceEEEE
Q 000101 1435 ARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1435 GRAhRIGQkKeV~Vy 1449 (2239)
||++|.|....+..|
T Consensus 499 GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 499 GRSGRQGDPGSSRFF 513 (745)
T ss_pred ccccCCCCCcceEEE
Confidence 999999988665443
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=208.42 Aligned_cols=333 Identities=18% Similarity=0.235 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-----------hCCCCC--eEEEechH-HHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-----------KGNYGP--HLIIVPNA-VLVNWKS 1067 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-----------k~~~GP--~LIVVP~S-LLsQW~~ 1067 (2239)
.+.|...|.-++. .....|-|.|||+|||+.+...|..-+.. ...+.. .|||+|+. |..|.+.
T Consensus 205 t~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~ 281 (731)
T KOG0347|consen 205 TEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQ 281 (731)
T ss_pred ccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHH
Confidence 3445444444443 12445778999999999988777652211 111122 69999998 7888888
Q ss_pred HHHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccC-CceEEEecccccc--cChhh
Q 000101 1068 ELHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKV-DWKYIIIDEAQRM--KDRES 1138 (2239)
Q Consensus 1068 Ef~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~ki-kWd~VIIDEAHrI--KN~~S 1138 (2239)
-|...++ .+.+..+.|+-...++- .+....++|||+|+++|..... +|.++ +..++||||++|| +.+-.
T Consensus 282 Hl~ai~~~t~i~v~si~GGLavqKQq--RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~ 359 (731)
T KOG0347|consen 282 HLKAIAEKTQIRVASITGGLAVQKQQ--RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFE 359 (731)
T ss_pred HHHHhccccCeEEEEeechhHHHHHH--HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHH
Confidence 8887764 67777788876554432 2333488999999999975432 23333 5689999999999 44445
Q ss_pred HHHHHhhccc-----c-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHH
Q 000101 1139 VLARDLDRYR-----C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1212 (2239)
Q Consensus 1139 KlskaLk~Lk-----a-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~ 1212 (2239)
.+++.|..+. . ..-+++|||- .|.. ..|..........+
T Consensus 360 Els~lL~~L~e~~~~~qrQTlVFSATl------------t~~~--------------~~~~~~~~k~~~k~--------- 404 (731)
T KOG0347|consen 360 ELSKLLKHLNEEQKNRQRQTLVFSATL------------TLVL--------------QQPLSSSRKKKDKE--------- 404 (731)
T ss_pred HHHHHHHHhhhhhcccccceEEEEEEe------------ehhh--------------cChhHHhhhccchh---------
Confidence 5666666553 1 2247788882 1110 00110000000000
Q ss_pred HHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHH
Q 000101 1213 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1292 (2239)
Q Consensus 1213 ~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ks 1292 (2239)
...-..+..++. .+.-.-+++ + +.+++.+...
T Consensus 405 ~~~~~kiq~Lmk---------~ig~~~kpk---i--iD~t~q~~ta---------------------------------- 436 (731)
T KOG0347|consen 405 DELNAKIQHLMK---------KIGFRGKPK---I--IDLTPQSATA---------------------------------- 436 (731)
T ss_pred hhhhHHHHHHHH---------HhCccCCCe---e--EecCcchhHH----------------------------------
Confidence 001112222221 111111222 1 2222222110
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEe
Q 000101 1293 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1372 (2239)
Q Consensus 1293 L~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~R 1372 (2239)
..+..-+-.| |.+.... ..-++ +..-..|.||||+..+.+..|.-+|...++..+.
T Consensus 437 --~~l~Es~I~C--~~~eKD~----ylyYf----------------l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 437 --STLTESLIEC--PPLEKDL----YLYYF----------------LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred --HHHHHHhhcC--Cccccce----eEEEE----------------EeecCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 1122222234 2111100 00000 0112458999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1373 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1373 LDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
||..|.++.|.+.+++|.... ..+||+|+++++|||++.+++||+|-.|-....|+||-||+.|.+.. .|.|..
T Consensus 493 LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvml 566 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVML 566 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEEE
Confidence 999999999999999998632 35899999999999999999999999999999999999999999844 454443
|
|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=176.24 Aligned_cols=95 Identities=21% Similarity=0.342 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
++|.+||++|..+ ..+..|+..+.+.++||||++ |++||||.+|..||+.++|.++++|..||+|||+||+.|
T Consensus 3 ~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 3 QKCEEILSKILKY------RFSWPFREPVTADEAEDYKKV-ITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHhC------CCcccccCCCChhhcccHHHH-cCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999654 356899999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
|+++|.||.+|.+|+++|.+++
T Consensus 76 N~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=201.60 Aligned_cols=306 Identities=19% Similarity=0.279 Sum_probs=210.4
Q ss_pred CChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaP-- 1074 (2239)
+|...|..++.-+..-.... .+-+|--++|+|||+.|+..+...++ ...-+.+.+|+.+ ..|-...|.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 67789999998777544332 34588889999999998777766665 2346799999994 5778889999997
Q ss_pred CCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-c-cc
Q 000101 1075 SVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-R-CQ 1150 (2239)
Q Consensus 1075 slkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-k-a~ 1150 (2239)
++.+.+..|+ ...|+.....+..+..+|||.|+..|..... -.+..+|||||-||+.- ..-..|..- . ..
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~P 412 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV---HQRLALREKGEQNP 412 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---HHHHHHHHhCCCCC
Confidence 5677777776 4466777788899999999999998865433 34678999999999842 222333322 3 57
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+.|.||||||..++.= . .|++.
T Consensus 413 h~LvMTATPIPRTLAl--t--------~fgDl------------------------------------------------ 434 (677)
T COG1200 413 HVLVMTATPIPRTLAL--T--------AFGDL------------------------------------------------ 434 (677)
T ss_pred cEEEEeCCCchHHHHH--H--------Hhccc------------------------------------------------
Confidence 8999999999887541 0 11110
Q ss_pred hHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1231 RVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1231 lKkDVekdLP~K~-e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
.-.+.++||+.. .+..+|--...-..+|+++.
T Consensus 435 -dvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~---------------------------------------------- 467 (677)
T COG1200 435 -DVSIIDELPPGRKPITTVVIPHERRPEVYERIR---------------------------------------------- 467 (677)
T ss_pred -cchhhccCCCCCCceEEEEeccccHHHHHHHHH----------------------------------------------
Confidence 001234577763 22222211111222333221
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH--------HHHHHHHHHHH--cCCeEEeecCCCCH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW--RQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~--------~LDILed~L~~--rGiky~RLDGsts~ 1379 (2239)
.++ ..|+++.+.|.-.+ .+..+...|.. -++++..+||.|+.
T Consensus 468 ---------------------------~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 468 ---------------------------EEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred ---------------------------HHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCCh
Confidence 111 13444444443322 12223333432 26678899999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++++++.+|++++.+ ||+||-+..+|||+++|+.+||+|.. +--++..|--||++|=+...-|..++
T Consensus 520 ~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~ 588 (677)
T COG1200 520 AEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLY 588 (677)
T ss_pred HHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEe
Confidence 9999999999987766 89999999999999999999999998 78899999999999966665554443
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=180.13 Aligned_cols=109 Identities=15% Similarity=0.248 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
+.+++.|.+||+.|..+ ..+..|+.++...++||||++ |++||||.+|.+||.++.|.++.+|..||.|||.|
T Consensus 4 ~~w~~~c~~il~~l~~~------~~s~~F~~PVd~~~~pdY~~i-Ik~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 4 SDWKKQCKELVNLMWDC------EDSEPFRQPVDLLKYPDYRDI-IDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHhC------CccccccCCCChhhcCcHHHH-hCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999765 457899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Q 000101 2016 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2053 (2239)
Q Consensus 2016 a~~yn~~-~sev~~dA~~L~~~f~~~~k~~fP~~df~~a 2053 (2239)
|+.||++ +|.||.+|..|+++|..+++...+ +|..|
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~--~~~~~ 113 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS--DWKSA 113 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999985 999999999999999999999866 45444
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-18 Score=175.33 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..+|+...+|+..|..+.|++||.+++.|++||+++ |+||.+ |++||||.+|..||++++|.++++|..||.|||.|
T Consensus 2 ~~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~~--~~~~~~-ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 2 LLVQELLATLFVSVMNHQDEEGRCYSDSLAELPELA--VDGVGP-KKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCcc--cCchhh-hcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999999955 677888 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
|+.||.++|++|+||..|+++|..+..+.+
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998776654
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=204.12 Aligned_cols=325 Identities=16% Similarity=0.198 Sum_probs=192.4
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH---------HHH---HhCCCCCeEEEech
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY---------LME---FKGNYGPHLIIVPN 1059 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~---------Lie---~k~~~GP~LIVVP~ 1059 (2239)
-|.-|....|++.|...=+.++..+..+...|+..+||+|||.++=-++.+ .++ .....+++||++|.
T Consensus 152 n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr 231 (675)
T PHA02653 152 NPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR 231 (675)
T ss_pred CCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH
Confidence 344455567888887777777777777889999999999999874322221 111 02234579999998
Q ss_pred H-HHHHHHHHHHHHC-----CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc
Q 000101 1060 A-VLVNWKSELHKWL-----PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1060 S-LLsQW~~Ef~Kwa-----Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI 1133 (2239)
. ++.+...++.+.. .+..+.+..|+.... .. .......+++|+|..... . .-.++.+|||||||.+
T Consensus 232 reLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~-~t~~k~~~Ilv~T~~L~l---~--~L~~v~~VVIDEaHEr 303 (675)
T PHA02653 232 VALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI-NTNPKPYGLVFSTHKLTL---N--KLFDYGTVIIDEVHEH 303 (675)
T ss_pred HHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh-hcccCCCCEEEEeCcccc---c--ccccCCEEEccccccC
Confidence 7 6667777776543 234455555554321 10 112225689999865311 1 1236889999999998
Q ss_pred cChhhHHHHHhhccc-c-ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHH
Q 000101 1134 KDRESVLARDLDRYR-C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEK 1211 (2239)
Q Consensus 1134 KN~~SKlskaLk~Lk-a-~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee 1211 (2239)
......+...++.+. . ...+++|||.- .+.. .|.++|..|....
T Consensus 304 ~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~------------------~l~~~~~~p~~I~--------------- 349 (675)
T PHA02653 304 DQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRD------------------RIKEFFPNPAFVH--------------- 349 (675)
T ss_pred ccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHH------------------HHHHHhcCCcEEE---------------
Confidence 654444444444332 2 25788999951 1111 1222221111000
Q ss_pred HHHHHHHHHHhhhhHHhhHhHhhhhc-CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHH
Q 000101 1212 KVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1290 (2239)
Q Consensus 1212 ~~lii~RLhklLrPFmLRRlKkDVek-dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ 1290 (2239)
+.. .+.+-....+.....+.+...|- .
T Consensus 350 -----------------------I~grt~~pV~~~yi~~~~~~~~~~~y~--~--------------------------- 377 (675)
T PHA02653 350 -----------------------IPGGTLFPISEVYVKNKYNPKNKRAYI--E--------------------------- 377 (675)
T ss_pred -----------------------eCCCcCCCeEEEEeecCcccccchhhh--H---------------------------
Confidence 000 00111111111110000000000 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHc--C
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWR--Q 1367 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~r--G 1367 (2239)
..|..++ .++..+ ...+..+|||+.....++.+...|... +
T Consensus 378 -----------------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~ 421 (675)
T PHA02653 378 -----------------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPI 421 (675)
T ss_pred -----------------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCC
Confidence 0011111 111111 123568999999999999999999877 7
Q ss_pred CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcC---CC---------CCcchHHHhhh
Q 000101 1368 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD---PD---------PNPKNEEQAVA 1435 (2239)
Q Consensus 1368 iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifD---pp---------WNP~~dlQAiG 1435 (2239)
+.+..|||+++.. ++.+++|.. .+. +-||++|+++++|||++++++||.++ .+ .+...+.||.|
T Consensus 422 ~~v~~LHG~Lsq~--eq~l~~ff~-~gk-~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaG 497 (675)
T PHA02653 422 YDFYIIHGKVPNI--DEILEKVYS-SKN-PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKG 497 (675)
T ss_pred ceEEeccCCcCHH--HHHHHHHhc-cCc-eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhcc
Confidence 9999999999864 567788742 223 34799999999999999999999998 22 26678999999
Q ss_pred hhcccCCcceEEEEEEeh
Q 000101 1436 RAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1436 RAhRIGQkKeV~VyrLva 1453 (2239)
|++|.. +-.+|+|.+
T Consensus 498 RAGR~~---~G~c~rLyt 512 (675)
T PHA02653 498 RVGRVS---PGTYVYFYD 512 (675)
T ss_pred CcCCCC---CCeEEEEEC
Confidence 999983 344556654
|
|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-18 Score=177.56 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=97.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
.+|...+. +|..||.+|... ..+..|+.++++.++||||++ |++||||.+|++||+.++|.++.+|..||.|
T Consensus 8 ~~~~~~~~-~c~~il~~l~~~------~~s~~F~~pvd~~~~pdY~~v-I~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 8 HHGPLNLS-ALEQLLVEIVKH------KDSWPFLRPVSKIEVPDYYDI-IKKPMDLGTIKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred CCCHHHHH-HHHHHHHHHHhC------CCchhhcCCCCccccccHHHH-hcCcccHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 46777776 899999999654 357899999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.||+.||+++|.+|.+|..|+++|.++++..
T Consensus 80 I~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 80 VFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-18 Score=173.67 Aligned_cols=103 Identities=23% Similarity=0.389 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
+++|+.++..|...++. ++++..|+.+|++.++|+||++ |.+||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 5 ~~~~~~~~~~i~~~~~~--~~~~~~F~~~~~~~~~p~Y~~~-i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 5 QKKLQSLLKAVLDKLDS--HRLSWPFLKPVDRKEAPDYYDI-IKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHHHh--CccchhhccCCChhhccCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555544443 5899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+++|.+|.+|..|+++|.++|+++
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999863
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=191.13 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=72.1
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC--CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1419 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG--iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVI 1419 (2239)
.+.|+||||+....++.+...|...+ +.+..++|.++..+|.++. .. .||++|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999765 5788999999999987653 12 38999999999999986 4666
Q ss_pred EcCCCCCcchHHHhhhhhc
Q 000101 1420 IYDPDPNPKNEEQAVARAH 1438 (2239)
Q Consensus 1420 ifDppWNP~~dlQAiGRAh 1438 (2239)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678899999999985
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=191.26 Aligned_cols=306 Identities=16% Similarity=0.193 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHhC----CCC-CeEEEechH-HHHHHHHHHHHH---C
Q 000101 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFKG----NYG-PHLIIVPNA-VLVNWKSELHKW---L 1073 (2239)
Q Consensus 1004 YQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Li-e~k~----~~G-P~LIVVP~S-LLsQW~~Ef~Kw---a 1073 (2239)
.|..++..++. +...+.-.-||+|||...+..+...+ ..+. ..+ ..+|+||+. |+.|....|.+. |
T Consensus 45 IQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 46667777765 66667778899999999888766544 3222 122 469999987 777777777665 3
Q ss_pred C-CCceEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChhh--HHHHHhhc
Q 000101 1074 P-SVSCIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRES--VLARDLDR 1146 (2239)
Q Consensus 1074 P-slkvvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~S--KlskaLk~ 1146 (2239)
+ .++++-... ..+.. ...+....++|||+|+..+.+.... .......++|+|||+.+...+. .+.+....
T Consensus 121 ~k~lr~~nl~s~~sdsv---~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~ 197 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSV---NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSH 197 (569)
T ss_pred HHhhhhhhhhcccchHH---HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHh
Confidence 3 333333332 12211 1124456789999999999876431 2334678999999999876443 34444445
Q ss_pred cccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh--
Q 000101 1147 YRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL-- 1223 (2239)
Q Consensus 1147 Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL-- 1223 (2239)
++..+ .+++|||- .. .+..|.+++
T Consensus 198 LPr~~Q~~LmSATl-~d----------------------------------------------------Dv~~LKkL~l~ 224 (569)
T KOG0346|consen 198 LPRIYQCFLMSATL-SD----------------------------------------------------DVQALKKLFLH 224 (569)
T ss_pred CCchhhheeehhhh-hh----------------------------------------------------HHHHHHHHhcc
Confidence 54333 57788882 00 122344433
Q ss_pred hhHHhhHhHhhhhcCCC--Cc-eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLP--PK-VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP--~K-~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
.|++|.-.- .++| .+ ..+.+.|. +.
T Consensus 225 nPviLkl~e----~el~~~dqL~Qy~v~cs--e~---------------------------------------------- 252 (569)
T KOG0346|consen 225 NPVILKLTE----GELPNPDQLTQYQVKCS--EE---------------------------------------------- 252 (569)
T ss_pred CCeEEEecc----ccCCCcccceEEEEEec--cc----------------------------------------------
Confidence 344432211 1233 11 12333332 11
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~e 1380 (2239)
.|+.+|.-+|. +.--..|.|||.+..+....|.-+|..-|++.|.|+|.++..
T Consensus 253 --------------------------DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~N 305 (569)
T KOG0346|consen 253 --------------------------DKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPAN 305 (569)
T ss_pred --------------------------hhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhccccccc
Confidence 13333333222 211245899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecc--------------------------c---------cccccCCCcCceEEEcCCCC
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIR--------------------------A---------AGRGLNLQSADTVIIYDPDP 1425 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTr--------------------------A---------GGeGLNLqaADtVIifDppW 1425 (2239)
.|..+|++||.+ -|. +||+|+ . .++|||++.+.+||+||.|-
T Consensus 306 SR~Hii~QFNkG--~Yd-ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~ 382 (569)
T KOG0346|consen 306 SRCHIIEQFNKG--LYD-IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE 382 (569)
T ss_pred chhhHHHHhhCc--cee-EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC
Confidence 999999999963 333 567777 1 25799999999999999999
Q ss_pred CcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1426 NPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1426 NP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++..|+||+||+.|-|.+..+.-|..
T Consensus 383 t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 383 TVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred chHHHHHhccccccCCCCCceEEEec
Confidence 99999999999999998877655543
|
|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-18 Score=173.66 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++|..||++|.. ...+.++..|+.+++.. ++||||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 3 ~~c~~Il~~l~~---~~~~~~s~~F~~pvd~~~~~~pdY~~~-I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 3 KFCEEVLKELMK---PKHSAYNWPFLDPVDPVALNIPNYFSI-IKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred HHHHHHHHHHHc---ccCCcccchhcCCCCccccCCCCHHHH-hcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999999944 45688999999996555 99999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
.||+++|.+|.+|..|+++|.++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=172.29 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
+++|+.||++| +..+|+.++..|++. |.+.++||||++ |.+||||.+|+.||+.++|.++.+|..||+|||.||
T Consensus 2 ~~~c~~il~~l---~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 77 (102)
T cd05498 2 LKFCSGILKEL---FSKKHKAYAWPFYKPVDPEALGLHDYHDI-IKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNC 77 (102)
T ss_pred hhHHHHHHHHH---HhCCCccccCcccCcCCccccCCCcHHHH-ccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999 445889999999996 556689999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+.||+++|.++.+|..|+++|..++
T Consensus 78 ~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 78 YKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=173.53 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.++..|.+|++.|.... ..+..|+.++.+.++||||.+ |++||||.+|..||++++|.++.+|..||.|||.
T Consensus 5 ~~~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDI-IKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHH-hcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4678889999999997764 358899999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCc-HHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2015 GAMQFYGFSH-EVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2015 Na~~yn~~~s-ev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
||+.||+++| .++.+|..|+++|.+.|+.. ||
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~-~~ 111 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLI-PD 111 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999999765 67899999999999988754 66
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=206.76 Aligned_cols=315 Identities=21% Similarity=0.274 Sum_probs=211.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCC-eEEEechH-HHHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGP-HLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP-~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
...+|.|-.++-.+.+ +..+|-...+|+|||+.++.++.......+ ..|| .||+||+. +..|..+++.+|
T Consensus 386 ~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 3677888888877776 888899999999999999776653322111 2255 58888988 777877777666
Q ss_pred CC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----h-hcccCCceEEEecccccccC--hhhHHHHH
Q 000101 1073 LP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----S-KLSKVDWKYIIIDEAQRMKD--RESVLARD 1143 (2239)
Q Consensus 1073 aP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s-~L~kikWd~VIIDEAHrIKN--~~SKlska 1143 (2239)
+. ++.++..+|..... +....++.+ ..|+|+|++.++.-. . ...-.+..|||+|||++|.. ..-..+++
T Consensus 462 ~k~l~ir~v~vygg~~~~-~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGIS-QQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HhhcCceEEEecCCccHH-HHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 53 34444444444333 333445555 899999999887542 2 22333577999999999842 22233444
Q ss_pred hhccccceE-EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1144 LDRYRCQRR-LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1144 Lk~Lka~rR-LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
|.+++..+- ++.||| |
T Consensus 540 i~nlrpdrQtvlfSat------------------------------f--------------------------------- 556 (997)
T KOG0334|consen 540 LQNLRPDRQTVLFSAT------------------------------F--------------------------------- 556 (997)
T ss_pred Hhhcchhhhhhhhhhh------------------------------h---------------------------------
Confidence 444433332 222333 0
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
|-.+..++..|.+ +|-. +++-. ...+|.. +.+.-.
T Consensus 557 --pr~m~~la~~vl~-~Pve--iiv~~-----~svV~k~-----------------------------------V~q~v~ 591 (997)
T KOG0334|consen 557 --PRSMEALARKVLK-KPVE--IIVGG-----RSVVCKE-----------------------------------VTQVVR 591 (997)
T ss_pred --hHHHHHHHHHhhc-CCee--EEEcc-----ceeEecc-----------------------------------ceEEEE
Confidence 0011122222332 2221 11100 0000000 000001
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000101 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382 (2239)
Q Consensus 1303 iCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeR 1382 (2239)
+|. ....||..|..||..... ..++||||+....+|.|.+-|...||.+..|||+.+..+|
T Consensus 592 V~~------------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 592 VCA------------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDR 652 (997)
T ss_pred Eec------------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHH
Confidence 111 023488899999888765 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1383 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1383 qeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
...+++|+++. ..+|++|+++++|||+.....||+||.+--...|.+|.||++|.|.+....+|
T Consensus 653 ~sti~dfK~~~---~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 653 SSTIEDFKNGV---VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred HhHHHHHhccC---ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 99999999643 44899999999999999999999999999999999999999999988744443
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-17 Score=189.06 Aligned_cols=303 Identities=19% Similarity=0.205 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHH---HHCCCCce
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELH---KWLPSVSC 1078 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~---KwaPslkv 1078 (2239)
..|..+|..|+.--. .|-|--..-|+|||..+...++......-...-+|.|+|+. +..|...-+. +|+ .+..
T Consensus 115 kIQe~aLPlll~~Pp--~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita 191 (477)
T KOG0332|consen 115 KIQETALPLLLAEPP--QNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTA 191 (477)
T ss_pred hHHHhhcchhhcCCc--hhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeE
Confidence 456677766665222 23355577899999777655554443333334467779988 5666444444 444 3343
Q ss_pred EE-EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcc---cCCceEEEecccccccChh--hH-HHHHhhccc-cc
Q 000101 1079 IY-YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLS---KVDWKYIIIDEAQRMKDRE--SV-LARDLDRYR-CQ 1150 (2239)
Q Consensus 1079 vv-y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~---kikWd~VIIDEAHrIKN~~--SK-lskaLk~Lk-a~ 1150 (2239)
.+ +.|++..| ......+|+|.|++++......|. -.+..++|+|||+.+.+.. .. -.+....+. ..
T Consensus 192 ~yair~sk~~r------G~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~ 265 (477)
T KOG0332|consen 192 SYAIRGSKAKR------GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQ 265 (477)
T ss_pred EEEecCccccc------CCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcc
Confidence 33 33442222 122345899999999987654433 3367899999999997654 22 223333444 45
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..|+.|||= -.....|...+
T Consensus 266 QllLFSATf-------------------~e~V~~Fa~ki----------------------------------------- 285 (477)
T KOG0332|consen 266 QLLLFSATF-------------------VEKVAAFALKI----------------------------------------- 285 (477)
T ss_pred eEEeeechh-------------------HHHHHHHHHHh-----------------------------------------
Confidence 577779881 00011111111
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+|+.....++-+ + +. +..+.+|--.|.+
T Consensus 286 --------vpn~n~i~Lk~e----e------------l~------------------------L~~IkQlyv~C~~---- 313 (477)
T KOG0332|consen 286 --------VPNANVIILKRE----E------------LA------------------------LDNIKQLYVLCAC---- 313 (477)
T ss_pred --------cCCCceeeeehh----h------------cc------------------------ccchhhheeeccc----
Confidence 122111111100 0 00 0001112112221
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
...|+.+|..|..- .. =...||||.....+..|...|...|+.+..|||.+...+|..++++|+
T Consensus 314 --------------~~~K~~~l~~lyg~-~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr 377 (477)
T KOG0332|consen 314 --------------RDDKYQALVNLYGL-LT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR 377 (477)
T ss_pred --------------hhhHHHHHHHHHhh-hh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh
Confidence 12366666663322 21 235799999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCC------CcchHHHhhhhhcccCCcce
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW------NP~~dlQAiGRAhRIGQkKe 1445 (2239)
.+... +||+|.+.++|||.+.++.||+||.|- ++..|+|||||++|.|.+.-
T Consensus 378 ~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~ 435 (477)
T KOG0332|consen 378 EGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL 435 (477)
T ss_pred cCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce
Confidence 86666 899999999999999999999999985 68899999999999996643
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-16 Score=210.99 Aligned_cols=313 Identities=15% Similarity=0.218 Sum_probs=182.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
..++++|..++..++. +.+.++...||+|||..++.++.++.. ....+|||+|+. |+.|+..+|.+++..
T Consensus 77 ~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred CCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999887775 778899999999999755544444332 245799999987 788999999998863
Q ss_pred Cce---EEEecchhh--HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1076 VSC---IYYVGAKDQ--RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1076 lkv---vvy~Gskd~--Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
+.+ .+|+|.... +......+..+.++|||+|++++.+....+.. ++++|||||||+|......+-+.|..
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~l---- 224 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKL---- 224 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHH----
Confidence 222 246665433 23334445556799999999999887666655 89999999999996532222222211
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
.|-- ...+..+|.++.. +.. ...+. .+..+..+++.
T Consensus 225 -----lGF~-~e~i~~il~~~~~---~~~-----------------------~~~~~-------~~~~~~~~~~~----- 260 (1171)
T TIGR01054 225 -----LGFS-EELIEKAWKLIRL---RLK-----------------------LYRAL-------HAKKRLELLEA----- 260 (1171)
T ss_pred -----cCCC-HHHHHHHHHHhhh---ccc-----------------------cchHH-------HHHHHHHHHHh-----
Confidence 0100 0001112222211 000 00000 11122222211
Q ss_pred hHhhhhcCCCCceE-EEEEeccC--HHH--HHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1231 RVEDVEGSLPPKVS-IVLRCRMS--AIQ--SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1231 lKkDVekdLP~K~e-~VV~c~MS--~~Q--r~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
+|.+.. ..+.+..| +.. ..++..+. .+.... . ...++.+.
T Consensus 261 --------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----~~~v~~-------~--------------~~~~r~I~- 305 (1171)
T TIGR01054 261 --------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-----GFEVGG-------G--------------SDTLRNVV- 305 (1171)
T ss_pred --------hhhccCcEEEEEeCCCCccccHHHHccccc-----ceEecC-------c--------------cccccceE-
Confidence 111111 11111111 100 01111000 000000 0 00001100
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccH---HHHHHHHHHHHHcCCeEEeecCCCCHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSLEDR 1382 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t---~~LDILed~L~~rGiky~RLDGsts~eeR 1382 (2239)
|.+ +....+...|..+|..+ +..+||||+.. ..++.|..+|...|+++..+||+++
T Consensus 306 ~~~--------------~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---- 364 (1171)
T TIGR01054 306 DVY--------------VEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP---- 364 (1171)
T ss_pred EEE--------------EecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----
Confidence 000 01111234555666543 57899999998 9999999999999999999999986
Q ss_pred HHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCCCCC
Q 000101 1383 ESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDPN 1426 (2239)
Q Consensus 1383 qeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDppWN 1426 (2239)
+.++++|.+++. . +||+ |+++++||||+. +++|||||.|--
T Consensus 365 ~~~l~~Fr~G~~--~-vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 KEDYEKFAEGEI--D-VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHHHHcCCC--C-EEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 368999997544 4 4555 699999999999 899999999943
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=170.38 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+.++|..++.+|... +..+..|... |.+.+.||||++ |++||||.+|..||++++|.++.+|..||.||
T Consensus 1 ~~~l~~~~~~il~~l~~~-----~~~s~~F~~PV~~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li 74 (108)
T cd05495 1 PEELRQALMPTLEKLYKQ-----DPESLPFRQPVDPKLLGIPDYFDI-VKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLM 74 (108)
T ss_pred CHHHHHHHHHHHHHHHHc-----CcccchhcCCCCccccCCCcHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467888999999999655 2467789986 566689999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+||+.||+++|.||++|..|+++|...|+..
T Consensus 75 ~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 75 FDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=168.13 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhc
Q 000101 1941 RCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFY 2020 (2239)
Q Consensus 1941 kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn 2020 (2239)
+|..|+..|.. +..+..|+.+++..++||||.+ |++||||.+|++||++++|.++.+|..||.|||.||+.||
T Consensus 4 ~c~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 4 LCETILDEMEA------HEDAWPFLEPVNTKLVPGYRKI-IKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHc------CCCchhhcCCCCccccCCHHHH-hCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 79999999955 3578899999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 000101 2021 GFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2021 ~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+++|.+|.+|..|+++|..+|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=167.86 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
++|..|+-+|+...+ +.+|..-| ..+||||++ |++||||.+|++||+++.|.++++|+.||.|||+||+.|
T Consensus 5 ~~ce~il~~l~~~~~------s~~f~~~p--~~~pdY~~i-Ik~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~y 75 (102)
T cd05501 5 LKCEFLLLKVYCMSK------SGFFISKP--YYIRDYCQG-IKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLF 75 (102)
T ss_pred HHHHHHHHHHHhCcc------cccccCCC--CCCCchHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999987643 34554445 499999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
|+++ .++..|..|++.|..+++.+|
T Consensus 76 N~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 76 YKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999987
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=169.31 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhc--ccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW--KRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp--~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
..++--++.||++|.. +..+..|.... .+.++||||++ |++||||.+|+.||+.++|.++.+|..||.|||
T Consensus 4 ~q~~~~~~~il~~l~~------~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 76 (107)
T cd05497 4 NQLQYLLKVVLKALWK------HKFAWPFQQPVDAVKLNLPDYHKI-IKTPMDLGTIKKRLENNYYWSASECIQDFNTMF 76 (107)
T ss_pred HHHHHHHHHHHHHHHh------CCcCccccCCCCcccccCCcHHHH-HcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3445456777777754 56799999994 45689999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||+.||+++|.||..|..|+++|.++|+.+
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999853
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=207.55 Aligned_cols=112 Identities=15% Similarity=0.296 Sum_probs=102.2
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHH
Q 000101 1931 SAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD 2008 (2239)
Q Consensus 1931 ~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D 2008 (2239)
+.++...+=+.|..||.+|+.++.. +.|... |....+||||.| |++||||+||..||..++|.++.||++|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~a------wpF~~PVD~v~LgLpDY~~I-IK~PMDLgTIK~kL~~~~Y~~~~eF~~D 288 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHA------WPFNEPVDVVKLGLPDYHDI-IKHPMDLGTIKKKLEKGEYKSAEEFAAD 288 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCC------CCcCCCcCHHhcCCcchhhh-cCCCccHHHHHhhhcccccCCHHHHHHH
Confidence 3455555556899999999988765 889888 888899999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000101 2009 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTD 2049 (2239)
Q Consensus 2009 ~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~d 2049 (2239)
|.|||+|||+||+++++||.-|..|.++|-.+|+.+++...
T Consensus 289 VRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 289 VRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999988433
|
|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=165.82 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++++|.+|+++|..+ ..+..|+..+.+.++|+||++ |++||||.+|..||+.++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~il~~l~~~------~~a~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 74 (101)
T cd05509 2 LYTQLKKVLDSLKNH------KSAWPFLEPVDKEEAPDYYDV-IKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCR 74 (101)
T ss_pred hHHHHHHHHHHHHhC------CCchhhcCCCChhhcCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999554 367899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
.||+++|.+|.+|..|+++|.++|+.
T Consensus 75 ~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 75 LYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=201.78 Aligned_cols=315 Identities=20% Similarity=0.201 Sum_probs=219.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P- 1074 (2239)
.|+.||.++++.+.+ +.+.|+.-.||+|||..++..|...+.. .....+|+|-|+. |.......|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLR-DPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhh-CcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 599999999988876 7899999999999999999988877653 4445889999977 6666888888886 3
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh------hhhcccCCceEEEecccccccC-hhhHHHHHhhcc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY 1147 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~L 1147 (2239)
.+.+..|.|.....++ ..+....++||||+|+++... ...+...+++||||||+|-+.. ..|.+.-.++++
T Consensus 145 ~v~~~~y~Gdt~~~~r--~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 145 KVTFGRYTGDTPPEER--RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred cceeeeecCCCChHHH--HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 4667778887443222 135667899999999998652 1222233589999999999965 455555544444
Q ss_pred -------c-cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhh-hcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000101 1148 -------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHR 1218 (2239)
Q Consensus 1148 -------k-a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~-F~kPf~~~g~~~~~e~d~l~~ee~~lii~R 1218 (2239)
. ....++.|||- ++..+|... |...|... ..
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~-v~------------------- 262 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVP-VD------------------- 262 (851)
T ss_pred HHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceee-cc-------------------
Confidence 1 33568889982 223333322 22222110 00
Q ss_pred HHHhhhhHHhhHhHhhhhcCCCCceEEE-EEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000101 1219 LHQILEPFMLRRRVEDVEGSLPPKVSIV-LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297 (2239)
Q Consensus 1219 LhklLrPFmLRRlKkDVekdLP~K~e~V-V~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niI 1297 (2239)
+.-.|....++ ++-+........
T Consensus 263 -----------------~~g~~~~~~~~~~~~p~~~~~~~~--------------------------------------- 286 (851)
T COG1205 263 -----------------EDGSPRGLRYFVRREPPIRELAES--------------------------------------- 286 (851)
T ss_pred -----------------CCCCCCCceEEEEeCCcchhhhhh---------------------------------------
Confidence 00011111111 111100000000
Q ss_pred HHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHH----HHHHHcC----Ce
Q 000101 1298 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----LV 1369 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILe----d~L~~rG----ik 1369 (2239)
..-.+...+..++..+...+-++|+|+.+...+..+. ..+...+ ..
T Consensus 287 --------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~ 340 (851)
T COG1205 287 --------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDA 340 (851)
T ss_pred --------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhh
Confidence 0112555666777777888999999999999998886 3444444 55
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceE
Q 000101 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1370 y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV 1446 (2239)
+....|++..++|.++...|+.++.. ++++|.++-.|+++...|.||.+-.|- .-..+.|+.||++|-+|.--+
T Consensus 341 v~~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~ 415 (851)
T COG1205 341 VSTYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV 415 (851)
T ss_pred eeeccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE
Confidence 77889999999999999999987665 899999999999999999999999999 789999999999999965444
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-15 Score=197.91 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=89.7
Q ss_pred CCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEE
Q 000101 1343 GHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1419 (2239)
Q Consensus 1343 GhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVI 1419 (2239)
...+|||+.....++.+...|.. .++.++.|||+++.++|.++++.|..+. +-|||||+++++|||++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~---rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR---RKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC---eEEEEecchHhhcccccCceEEE
Confidence 56899999999999999999986 4789999999999999999999997532 34799999999999999999999
Q ss_pred EcCCC----CCcch--------------HHHhhhhhcccCCcceEEEEEEehh
Q 000101 1420 IYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1420 ifDpp----WNP~~--------------dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
.++.+ +||.. +.||.||++|.+ +-.+|+|++-
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t~ 335 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWSE 335 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCCH
Confidence 99876 45554 789999999983 4456777663
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-16 Score=201.66 Aligned_cols=359 Identities=17% Similarity=0.166 Sum_probs=202.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.+|.++|.++++.+.... .+...+|...||+|||..++.++...+.. .+.+|||||+. |+.||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999987643 33557999999999999998877766642 35799999976 88999999999874 56
Q ss_pred eEEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC--hhhH-----HHHHhh-cc
Q 000101 1078 CIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD--RESV-----LARDLD-RY 1147 (2239)
Q Consensus 1078 vvvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN--~~SK-----lskaLk-~L 1147 (2239)
+.+++|.. .++.+.+..+..+..+|||+|+..+. +.-.++.+|||||+|...- .... ....+. ..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 77777653 34444445566677899999998764 2234678999999998631 1111 111111 22
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
.....+++||||-.. .++.... +.+.. -...+.+.
T Consensus 293 ~~~~~il~SATps~~---s~~~~~~----g~~~~-~~l~~r~~------------------------------------- 327 (679)
T PRK05580 293 ENIPVVLGSATPSLE---SLANAQQ----GRYRL-LRLTKRAG------------------------------------- 327 (679)
T ss_pred cCCCEEEEcCCCCHH---HHHHHhc----cceeE-EEeccccc-------------------------------------
Confidence 334578889999422 1111100 00000 00000000
Q ss_pred hhHhHhhhhcCCCCceEEEEEe----------ccCHHHHHHHHHHHH---hc-CcccCchhHHhhhhcChhhHHHHHHHH
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRC----------RMSAIQSAIYDWIKA---TG-TLRVDPEDEKRRVQKNPIYQAKVYKTL 1293 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c----------~MS~~Qr~LY~~I~~---~~-~l~l~~~~ek~~l~k~~~~~~k~~ksL 1293 (2239)
...+|.. .++.. .++. .+++.+.+ .+ ...+-. .... +..
T Consensus 328 --------~~~~p~v--~~id~~~~~~~~~~~~ls~---~l~~~i~~~l~~g~qvll~~--------nrrG-----y~~- 380 (679)
T PRK05580 328 --------GARLPEV--EIIDMRELLRGENGSFLSP---PLLEAIKQRLERGEQVLLFL--------NRRG-----YAP- 380 (679)
T ss_pred --------cCCCCeE--EEEechhhhhhcccCCCCH---HHHHHHHHHHHcCCeEEEEE--------cCCC-----CCC-
Confidence 0001110 00000 0111 11111111 11 000000 0000 000
Q ss_pred HHHHHHHHHHcCCCC----CCCCC-ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--
Q 000101 1294 NNRCMELRKTCNHPL----LNYPY-FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-- 1366 (2239)
Q Consensus 1294 ~niImqLRKiCnHP~----L~~p~-~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-- 1366 (2239)
.. +...|.+.. +..+. +........+..||....+...++.+ |.. .|..+....+.+++.|...
T Consensus 381 ---~~-~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp 451 (679)
T PRK05580 381 ---FL-LCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFP 451 (679)
T ss_pred ---ce-EhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCC
Confidence 00 011121111 10000 00011112233344322222222222 112 2334445566777777665
Q ss_pred CCeEEeecCCCC--HHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC---CCc---------chHHH
Q 000101 1367 QLVYRRIDGTTS--LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD---PNP---------KNEEQ 1432 (2239)
Q Consensus 1367 Giky~RLDGsts--~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp---WNP---------~~dlQ 1432 (2239)
++++.++||.++ .+++++++++|.+++.+ ||++|+..+.|+|++.++.|+++|.| ..| ..+.|
T Consensus 452 ~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q 528 (679)
T PRK05580 452 EARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQ 528 (679)
T ss_pred CCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHH
Confidence 889999999986 46799999999976666 78999999999999999999888776 223 57999
Q ss_pred hhhhhcccCCcceEEEEEE
Q 000101 1433 AVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrL 1451 (2239)
+.||++|.+....|.+...
T Consensus 529 ~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 529 VAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HHhhccCCCCCCEEEEEeC
Confidence 9999999887777766544
|
|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-17 Score=166.55 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.+.++|..++++|.. +..+..|...++...+||||++ |++||||.+|++||++++|.++.||..||.|||.||
T Consensus 3 ~~~~~~~~il~~l~~------~~~a~~F~~pV~~~~~p~Y~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 3 AWKKAILLVYRTLAS------HRYASVFLKPVTEDIAPGYHSV-VYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHHHHHHHHHHHHHc------CCCCHhhcCCCCccccCCHHHH-hCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999855 5569999999988999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
+.||+++|.||.+|..|++.|.++|..
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998764
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=169.78 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=97.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc-cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1933 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI-ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1933 kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~-~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
-+.+.++.+|..++.+| ++..++.++..|...+.+. .+|+||++ |++||||.+|.+||+++.|.+..+|..||+|
T Consensus 20 ~~~~~~~~~i~~~l~~l---~~~~~~~~~~~F~~pv~~~~~~p~Y~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 95 (128)
T cd05529 20 HIRDEERERLISGLDKL---LLSLQLEIAEYFEYPVDLRAWYPDYWNR-VPVPMDLETIRSRLENRYYRSLEALRHDVRL 95 (128)
T ss_pred CCCHHHHHHHHHHHHHH---HhcccCcccccccCCCCccccCCcHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34467777777777776 5668999999999999999 99999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
||.||+.||+++|.++..|+.|+++|..+++.
T Consensus 96 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 96 ILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998863
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=199.54 Aligned_cols=309 Identities=23% Similarity=0.184 Sum_probs=194.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|++.|..++.-.+.- +.|.|+|..||+|||++|...|...+.. ..++++.|||.. |+..-..+|.+|.. +++
T Consensus 31 el~~~qq~av~~~~~~---~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---DENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccC---CCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 8999999998655432 7889999999999999988877665542 257999999976 77888888986643 788
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh------hhHHHHHhhcccc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR------ESVLARDLDRYRC 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~------~SKlskaLk~Lka 1149 (2239)
+.++.|.-+.... ...+++|+||||+.+-..... .--...++|||||+|.+... .+-+++....-..
T Consensus 106 V~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~ 180 (766)
T COG1204 106 VGISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL 180 (766)
T ss_pred EEEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcc
Confidence 9999998664432 235789999999988533211 12236789999999999664 1222222222222
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
-+.++||||- ++..+|-.|++..... ...+|.-++
T Consensus 181 ~rivgLSATl--------------------pN~~evA~wL~a~~~~-------------------------~~~rp~~l~ 215 (766)
T COG1204 181 IRIVGLSATL--------------------PNAEEVADWLNAKLVE-------------------------SDWRPVPLR 215 (766)
T ss_pred eEEEEEeeec--------------------CCHHHHHHHhCCcccc-------------------------cCCCCcccc
Confidence 4778999992 3334444444321100 011111111
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
|.. |... .+..+.-.. +
T Consensus 216 ~~v-------~~~~-~~~~~~~~~----------------------k--------------------------------- 232 (766)
T COG1204 216 RGV-------PYVG-AFLGADGKK----------------------K--------------------------------- 232 (766)
T ss_pred cCC-------ccce-EEEEecCcc----------------------c---------------------------------
Confidence 110 0000 000000000 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----c---------C---------
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----R---------Q--------- 1367 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----r---------G--------- 1367 (2239)
.....+...+.+++.+..+.+.-|||||..+......+..|.. . .
T Consensus 233 -------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 299 (766)
T COG1204 233 -------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIP 299 (766)
T ss_pred -------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccc
Confidence 0000122334444555667788899999887766666555542 0 0
Q ss_pred ---------------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc-----C-----
Q 000101 1368 ---------------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY-----D----- 1422 (2239)
Q Consensus 1368 ---------------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif-----D----- 1422 (2239)
..+..-|.+++.++|.-+=+.|+.+.-+ ||+||...+.|+||+ |++|||- |
T Consensus 300 ~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 300 ETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCe
Confidence 0122346788999999999999975444 799999999999999 5666654 4
Q ss_pred CCCCcchHHHhhhhhcccCCc
Q 000101 1423 PDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1423 ppWNP~~dlQAiGRAhRIGQk 1443 (2239)
-+-++..++|-.|||+|.|=.
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred EECchhhHhhccCcCCCCCcC
Confidence 334577899999999998854
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-15 Score=194.58 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=89.0
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|.+++..|..+ .+-|||||+++.+||+++++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G---~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG---RRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC---CeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 578899999999999999999999753 23489999999999999999999
Q ss_pred EEcCCC----CCcc--------------hHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1419 IIYDPD----PNPK--------------NEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1419 IifDpp----WNP~--------------~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|.++.+ |||. .+.||.||++|.+ +-.+|+|.+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecC
Confidence 997765 3332 5899999999973 556677765
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=209.48 Aligned_cols=338 Identities=16% Similarity=0.251 Sum_probs=194.3
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
|.+++++|..++..++. +...++..+||+|||+..+.+...+. .....+|||+|+. |+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34699999999988886 77789999999999984333322222 1234799999987 77889999998764
Q ss_pred --CCceEEEecchhhHH--HHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1075 --SVSCIYYVGAKDQRS--RLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk--~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
.+.+.+++|+..... .....+..+.++|+|+|++.+......+...++++|||||||+|....-.+-+.|.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~----- 224 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQ----- 224 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhh-----
Confidence 345666777654332 23344556679999999999887654444467999999999998532111111111
Q ss_pred eEEEecCCCCCCCHH-HHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1151 RRLLLTGTPLQNDLK-ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~-ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
|-|- ...+. ..|.++.. .. ...... . . ..+.+|...+.
T Consensus 225 ----llGF--~~e~~~~~~~il~~---~~--------------------~~~~~~--~-~----~~~~~l~~~~~----- 263 (1638)
T PRK14701 225 ----LLGF--YEEIIEKAWKIIYL---KK--------------------QGNIED--A-M----EKREILNKEIE----- 263 (1638)
T ss_pred ----cCCC--hHHHHHHHHHhhhc---cc--------------------ccccch--h-h----hhhhhhhhhhh-----
Confidence 0010 00000 00111110 00 000000 0 0 01122222220
Q ss_pred HhHhhhhcCCCCceEEEEE--eccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLR--CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~--c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.+|......+. ..+++... .-..+ .. .+.+.... ..+
T Consensus 264 --------~~~~~~~~ll~~SAT~~~r~~-~~~l~-~~-~l~f~v~~------------------------------~~~ 302 (1638)
T PRK14701 264 --------KIGNKIGCLIVASATGKAKGD-RVKLY-RE-LLGFEVGS------------------------------GRS 302 (1638)
T ss_pred --------hcCCCccEEEEEecCCCchhH-HHHHh-hc-CeEEEecC------------------------------CCC
Confidence 12332222222 22222110 00000 00 00000000 000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHH---HHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~---LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
....+...++.........|.++|..+ +..+||||+.... ++.|..+|...|+++..+||. |..
T Consensus 303 -----~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 303 -----ALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred -----CCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 000000001101111123455565543 6789999987664 589999999999999999994 899
Q ss_pred HHHHHhcCCCCccEEEEec----cccccccCCCc-CceEEEcCCCC---CcchHHHhh-------------hhhcccCCc
Q 000101 1385 AIVDFNSHDSDCFIFLLSI----RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQAV-------------ARAHRIGQK 1443 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLST----rAGGeGLNLqa-ADtVIifDppW---NP~~dlQAi-------------GRAhRIGQk 1443 (2239)
.+++|.+++.+ +|++| +++++|||++. +.+|||||.|- |...+.|.. ||++|-|..
T Consensus 370 ~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 370 GFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 99999976555 67787 58899999998 99999999998 766666655 999998865
Q ss_pred ce
Q 000101 1444 RE 1445 (2239)
Q Consensus 1444 Ke 1445 (2239)
-+
T Consensus 447 ~~ 448 (1638)
T PRK14701 447 IE 448 (1638)
T ss_pred ch
Confidence 33
|
|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=162.50 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.|+.-+..++++|+ +..+..|...+++.++||||.+ |++||||.+|++||+.++|.++++|..||.|||.||
T Consensus 3 ~l~~~L~~~~~~~~-------~~~s~~F~~PV~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na 74 (99)
T cd05508 3 QLSKLLKFALERMK-------QPGAEPFLKPVDLEQFPDYAQY-VFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNA 74 (99)
T ss_pred HHHHHHHHHHHHHh-------CcCcchhcCCCChhhCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34555666666663 4579999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+.||+++|.++..|..|.++|...|
T Consensus 75 ~~YN~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 75 IIYNGGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999997643
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=188.23 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=90.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecch--hhHHHHHHHHhhcC
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQVAALK 1099 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gsk--d~Rk~l~~~i~~~k 1099 (2239)
||...||+|||.+++.++.+.+.. .+.+|||+|.. |+.|+...|.++++ ..+.++++.. .+|.+.+..+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 356689999999998888776642 34799999976 88999999998875 4566677643 34445555566678
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEeccccccc--ChhhH------HHHHhhccccceEEEecCCCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK--DRESV------LARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK--N~~SK------lskaLk~Lka~rRLLLTGTPI 1160 (2239)
.+|||+|+..+.. .-.++.+|||||.|... ..... +......+.....|++||||.
T Consensus 77 ~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 77 ILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 8999999987742 23467999999999863 22111 122222334456888999994
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=162.00 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=93.2
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
|++.+.++|.++|.+|... ..+..|... |.+..+||||++ |.+||||.+|+.||+.+.|.++.+|..||+|
T Consensus 1 ~t~~~~~~~~~ii~~l~~~------~~a~~F~~pv~~~~~~~p~Y~~~-I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRL------KDARPFLVPVDPVKLNIPHYPTI-IKKPMDLGTIERKLKSNVYTSVEEFTADFNL 73 (103)
T ss_pred CCHHHHHHHHHHHHHHHcC------CCChhhcCCCCcccccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5788889999999999643 567899998 557799999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
||.||+.||+++|.++.+|..|++.|..+|
T Consensus 74 i~~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 74 MVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=163.14 Aligned_cols=102 Identities=17% Similarity=0.280 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+...|..++++|... ..+..|+..++..++||||++ |++||||.+|..||++++|.++.+|..||.|||+||+
T Consensus 4 lr~~L~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 4 LRLFLRDVLKRLASD------KRFNAFTKPVDEEEVPDYYEI-IKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred HHHHHHHHHHHHHhC------CCchhhcCCCCccccCcHHHH-HcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHH
Confidence 444578888888554 456899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCC----cHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2018 QFYGFS----HEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2018 ~yn~~~----sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.||+++ |.+|.+|+.|+++|..++...+|
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999994 79999999999999999999988
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-16 Score=190.01 Aligned_cols=315 Identities=17% Similarity=0.207 Sum_probs=203.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Li-e~k----~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
.-.|.|..++..++. +.+++-|..+|+|||+..++.|...+ ... ...-..+||.|+. |+.|...|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 355778888888887 77889999999999999988765433 332 2223579999987 7888999999987
Q ss_pred --CC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh----cccCCceEEEecccccccChhh---HHHH
Q 000101 1074 --PS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMKDRES---VLAR 1142 (2239)
Q Consensus 1074 --Ps--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~----L~kikWd~VIIDEAHrIKN~~S---Klsk 1142 (2239)
+. +.+..+........ .........++|+|.|+..+...... +.-....++|+|||+++.++.. ++..
T Consensus 234 ~~~~t~~~a~~~~~~~~~~q-k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQ-KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCchhhhhcccccchhh-ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 32 22222222211111 11123345789999999999877543 3444667799999999987611 1111
Q ss_pred Hhhccccc--eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1143 DLDRYRCQ--RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1143 aLk~Lka~--rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
.+....+. ++=++|||- + .. +..+.
T Consensus 313 I~sac~s~~i~~a~FSat~----------------~------~~-------------------------------VEE~~ 339 (593)
T KOG0344|consen 313 IYSACQSPDIRVALFSATI----------------S------VY-------------------------------VEEWA 339 (593)
T ss_pred HHHHhcCcchhhhhhhccc----------------c------HH-------------------------------HHHHH
Confidence 11111111 111123330 0 00 01111
Q ss_pred HhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
+++ +.++ ...+|-. ...+ ++.+.+=
T Consensus 340 ~~i--------~~~~-------~~vivg~--~~sa--------------------------------------~~~V~Qe 364 (593)
T KOG0344|consen 340 ELI--------KSDL-------KRVIVGL--RNSA--------------------------------------NETVDQE 364 (593)
T ss_pred HHh--------hccc-------eeEEEec--chhH--------------------------------------hhhhhhh
Confidence 111 1110 0011111 1100 0000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHH-HHcCCeEEeecCCCCH
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L-~~rGiky~RLDGsts~ 1379 (2239)
++| ....-+|+..+..++.... .-.+|||.|..+-+..|...| ..-++.+..|||.-++
T Consensus 365 -------lvF-----------~gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~ 424 (593)
T KOG0344|consen 365 -------LVF-----------CGSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQ 424 (593)
T ss_pred -------hee-----------eecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccch
Confidence 000 0112357777777766543 468999999999999999999 7889999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.+|.+.+++|+.+.. . +|++|++.++|||+.++++||+||.|-.-..|++|+||++|.|+......||
T Consensus 425 ~qrde~~~~FR~g~I--w-vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 425 KQRDETMERFRIGKI--W-VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hHHHHHHHHHhccCe--e-EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 999999999997433 3 6999999999999999999999999999999999999999999886554443
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.6e-16 Score=166.19 Aligned_cols=153 Identities=27% Similarity=0.372 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs 1075 (2239)
+||+||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999999887765 78899999999999999998888774 89999997 5899999999888765
Q ss_pred CceEEEecc-----------hhhHHHHHHHHhhcCccEEEEehhHHHHhhhh-------------cccCCceEEEecccc
Q 000101 1076 VSCIYYVGA-----------KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK-------------LSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1076 lkvvvy~Gs-----------kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~-------------L~kikWd~VIIDEAH 1131 (2239)
......... ................+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 444322111 00000111224456788999999999866322 233478999999999
Q ss_pred cccChhhHHHHHhhccccceEEEecCCCC
Q 000101 1132 RMKDRESVLARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1132 rIKN~~SKlskaLk~Lka~rRLLLTGTPI 1160 (2239)
++.+... ++.+..+...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9965443 55555588889999999995
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=163.23 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
.+.|+++|... ..+..|+.++.+.++|+||++ |++||||.+|++||+.++|.++.+|..||.|||.||+.||+
T Consensus 5 l~~ii~~l~~~------~~s~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 77 (112)
T cd05511 5 LDEIVNELKNL------PDSWPFHTPVNKKKVPDYYKI-IKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNG 77 (112)
T ss_pred HHHHHHHHHhC------CCchhhcCCCChhhcccHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34667777443 578999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2022 FSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2022 ~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
++|.+|.+|..|+++|.+++...
T Consensus 78 ~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 78 PDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-16 Score=160.19 Aligned_cols=96 Identities=17% Similarity=0.313 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
++.|..||++|..+ ..+..|..+ |.+.++|+||++ |.+||||.+|+.||+.+.|.++.+|..||.|||.||
T Consensus 2 ~~~c~~il~~l~~~------~~~~~F~~pv~~~~~~~p~Y~~~-I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 74 (99)
T cd05506 2 MKQCGTLLRKLMKH------KWGWVFNAPVDVVALGLPDYFDI-IKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANA 74 (99)
T ss_pred HHHHHHHHHHHHhC------CCCccccCCCCccccCCCCHHHH-HcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45899999999654 347788887 556789999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~ 2041 (2239)
+.||+++|.+|.+|..|+++|..++
T Consensus 75 ~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 75 MRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=181.01 Aligned_cols=308 Identities=20% Similarity=0.251 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCC--ceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSV--SCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-sQW~~Ef~KwaPsl--kvv 1079 (2239)
..|..|+.=++. +.+.+.-...|+|||.+....++..+.......-+||++|.+.+ .|....+..|.... .+.
T Consensus 51 aIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~ 126 (397)
T KOG0327|consen 51 AIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVH 126 (397)
T ss_pred HHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeee
Confidence 456666655554 78888888899999999887777776544444568999999955 45555566666544 555
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEeccccccc--ChhhHHHHHhhccccc-eEEE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK--DRESVLARDLDRYRCQ-RRLL 1154 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIK--N~~SKlskaLk~Lka~-rRLL 1154 (2239)
.+.|....+... ..+.....+|++.|++.+..- ...|......+.|+|||+.++ +...+++.....++.+ ..++
T Consensus 127 ~~igg~~~~~~~-~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l 205 (397)
T KOG0327|consen 127 ACIGGTNVRRED-QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVL 205 (397)
T ss_pred eecCcccchhhh-hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhhee
Confidence 556654444332 224445679999999888643 335666678999999999985 4556677777777655 4566
Q ss_pred ecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhh
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1234 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkD 1234 (2239)
+|||- ..|+..+ .+.| ...|
T Consensus 206 ~SAT~----p~~vl~v-----------t~~f---~~~p------------------------------------------ 225 (397)
T KOG0327|consen 206 LSATM----PSDVLEV-----------TKKF---MREP------------------------------------------ 225 (397)
T ss_pred ecccC----cHHHHHH-----------HHHh---ccCc------------------------------------------
Confidence 78882 1111000 0000 0000
Q ss_pred hhcCCCCceEEEEE-eccC-HHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1235 VEGSLPPKVSIVLR-CRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1235 VekdLP~K~e~VV~-c~MS-~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
+.+.++ -.++ +.++.+|-.
T Consensus 226 --------v~i~vkk~~ltl~gikq~~i~--------------------------------------------------- 246 (397)
T KOG0327|consen 226 --------VRILVKKDELTLEGIKQFYIN--------------------------------------------------- 246 (397)
T ss_pred --------eEEEecchhhhhhheeeeeee---------------------------------------------------
Confidence 000000 0000 000000000
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
..+ ..|+..|..+.. .-..++|||+...-++.|.+.|..+++....+||.+...+|..++.+|+.+
T Consensus 247 ----v~k------~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 247 ----VEK------EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred ----ccc------cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC
Confidence 000 016677766666 345789999999999999999999999999999999999999999999987
Q ss_pred CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
.+. +||+|+..++|||++.++.||+||.|-|...|.+|+||++|.|.+.- ++.+++
T Consensus 313 ssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~--~in~v~ 368 (397)
T KOG0327|consen 313 SSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV--AINFVT 368 (397)
T ss_pred Cce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce--eeeeeh
Confidence 776 89999999999999999999999999999999999999999996533 344443
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=180.78 Aligned_cols=415 Identities=14% Similarity=0.203 Sum_probs=235.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH---HHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN---WKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQ---W~~Ef~KwaPs 1075 (2239)
..++-|+.|.--|. .|-|.-..||.|||++++..+..... .+ ..++||+|+. |..+ |...|.+|+ +
T Consensus 82 ~~ydvQliGg~~Lh------~G~Iaem~TGeGKTL~a~Lpa~~~al-~G--~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH------EGNIAEMRTGEGKTLVATLPAYLNAI-SG--RGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhhc------cCccccccCCCCchHHHHHHHHHHHh-cC--CCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 34444888765442 35588899999999988766553332 22 3589999988 5555 555565555 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHH----HHhhhhcc-----cCCceEEEecccccccChhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFI----MYDRSKLS-----KVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L----~kD~s~L~-----kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
+.+.++.|+.....+. .....+|+++|.+.| .++.-.+. ...+.++||||||.|.= ..
T Consensus 152 Ltv~~i~gg~~~~~r~----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI---------De 218 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQ----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI---------DE 218 (896)
T ss_pred ceEEEEeCCCCHHHHH----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh---------hc
Confidence 6666666654322221 122679999999998 33321121 14789999999999841 11
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhh----cCcc-------cC-----------C-hHHHHhhhcCCcccCCCCCCCC
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLL----LPEV-------FD-----------N-RKAFHDWFSQPFQKEGPTHNAD 1203 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFL----lP~i-------F~-----------s-~k~F~e~F~kPf~~~g~~~~~e 1203 (2239)
+..-|++||.+- ...++|..++.+ ..+. |. . -..+.+.| +...+.....+
T Consensus 219 --ArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~---~~~~~il~~~~ 291 (896)
T PRK13104 219 --ARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL---LTKAKLLDPGE 291 (896)
T ss_pred --cCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH---HHhCCccCCcc
Confidence 223467787643 224555544433 2220 00 0 00010000 00000000000
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhH
Q 000101 1204 DDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDE 1275 (2239)
Q Consensus 1204 ~d~l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~e 1275 (2239)
.+.........+.+...|+.. ++.+-+.-|.. +....+|. +.| .+..-+.+.|.....+.+....
T Consensus 292 --~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~- 364 (896)
T PRK13104 292 --SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN- 364 (896)
T ss_pred --cccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc-
Confidence 000001111223333334332 33333222221 11112221 222 2334444555443333222111
Q ss_pred HhhhhcChhhH--HHHHH-------HHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHh
Q 000101 1276 KRRVQKNPIYQ--AKVYK-------TLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQR 1341 (2239)
Q Consensus 1276 k~~l~k~~~~~--~k~~k-------sL~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLka 1341 (2239)
..+..- .++ -+.|. .....-..+.++-+.+.+..|..... ..........|+..+..-+.++..
T Consensus 365 -~t~AsI-T~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~ 442 (896)
T PRK13104 365 -QTLASI-TFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV 442 (896)
T ss_pred -eeeeee-hHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh
Confidence 000000 000 00000 01112345566655555444432211 111122344688888888888999
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc-------
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------- 1414 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa------- 1414 (2239)
.|..|||||..+...+.|..+|...|+++..|+|.....+|..+.+.|+.+ . |+|+|+.+|+|+|+.=
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lggn~~~~ 517 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLGGSLAAD 517 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecCCchhhh
Confidence 999999999999999999999999999999999999999999999999863 3 8999999999999762
Q ss_pred -------------------------------CceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1415 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1415 -------------------------------ADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
-=+||.-..+-|-..+.|-.||++|-|......+| ++.|+.+..
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~--lSleD~l~~ 592 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY--LSLEDNLMR 592 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE--EEcCcHHHH
Confidence 23788899999999999999999999988776554 244555443
|
|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-16 Score=158.32 Aligned_cols=91 Identities=10% Similarity=0.264 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
...|+.++++|.. +..+..|+....+.++||||++ |++||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 3 ~~~l~~il~~l~~------~~~~~~F~~pVd~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 75 (98)
T cd05512 3 EVLLRKTLDQLQE------KDTAEIFSEPVDLSEVPDYLDH-IKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLA 75 (98)
T ss_pred HHHHHHHHHHHHh------CCCchhhcCCCCccccCCHHHH-hcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457777777744 6788999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDL 2036 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~ 2036 (2239)
||+++|.+|++|..|++.
T Consensus 76 yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 76 YNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HCCCCCHHHHHHHHHHHh
Confidence 999999999999999874
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=183.95 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC---CeEEeecCCCCHHHH----HHHHHHHh-cCCCCccEEEEe
Q 000101 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDFN-SHDSDCFIFLLS 1402 (2239)
Q Consensus 1331 lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG---iky~RLDGsts~eeR----qeiL~~FN-s~ds~~~VfLLS 1402 (2239)
++..++.. ...|++|||||+.+..+..+.+.|...+ +.+..+||.++..+| .++++.|. ++......|||+
T Consensus 549 ~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 34444433 3468899999999999999999998765 678999999999999 56788894 322222358999
Q ss_pred ccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1403 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
|.+...|||+ ++|+||....| ...++||+||+||.|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 68999987666 56899999999999874
|
|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-16 Score=157.82 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
+.+.|.+|+++|.... .+..|+........||||++ |++||||.+|.+||++++|.++.+|..||.|||.||+
T Consensus 2 l~~~l~~il~~l~~~~------~~~~F~~PV~~~~~pdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 74 (98)
T cd05513 2 LQKALEQLIRQLQRKD------PHGFFAFPVTDFIAPGYSSI-IKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAM 74 (98)
T ss_pred HHHHHHHHHHHHHcCC------ccccccCcCCccccccHHHH-HcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567889999886542 36689998888899999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDL 2036 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~ 2036 (2239)
.||+++|.+|++|..|...
T Consensus 75 ~yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 75 KYNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred HHCCCCCHHHHHHHHHHHh
Confidence 9999999999999999754
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=155.98 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
.|+..+..++.++...+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 5888888888887767899999999999999999999999999999999999999999999999754 4588899999
Q ss_pred ccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1407 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1407 GeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++|+|++.+++||+++++|++..+.|++||++|.|+++.|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777654
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-16 Score=152.15 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
...|..++++|.... +.++..|..+|++..+|+||++ |++||||.+|++||+.++|.++.+|..||.|||.||+.
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~-i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 76 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEV-IKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHH-HhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999997664 8899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDL 2040 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~ 2040 (2239)
||+.+|.++..|..|+.+|..+
T Consensus 77 ~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 77 YNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-13 Score=171.83 Aligned_cols=422 Identities=14% Similarity=0.176 Sum_probs=226.8
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HH---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VN---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-sQ---W~~Ef~Kwa 1073 (2239)
+...++-|+.|.--| +.|.|.=..||.|||+++...+..... ....+-||+|+..| .+ |...+-+++
T Consensus 78 g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al---~G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 78 GLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNAL---TGKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHH---cCCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 334555688886544 234577799999999997554433332 23467888998855 33 666666665
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++.+.+..+. ...|+.. ...+|+-+|-..|.-| ...+....+.++||||++.+.=
T Consensus 149 -Gl~vg~i~~~~~~~~r~~~------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi------- 214 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRAA------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI------- 214 (796)
T ss_pred -CCeEEEeCCCCCHHHHHHH------hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee-------
Confidence 4666666554 2333322 2567877775554322 1122234789999999998741
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChH------HHHhhhcCCcccCCCCCCCChhhHH--------
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK------AFHDWFSQPFQKEGPTHNADDDWLE-------- 1208 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k------~F~e~F~kPf~~~g~~~~~e~d~l~-------- 1208 (2239)
. .+..-|++||.+- ...++|..++-+-..+-.... .....|..--... ...-.+.....
T Consensus 215 --D--eartPLiisg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k-~v~lte~G~~~~e~~~~i~ 287 (796)
T PRK12906 215 --D--EARTPLIISGQAE--KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTK-TISLTEQGIRKAEKLFGLD 287 (796)
T ss_pred --c--cCCCceecCCCCC--cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccC-ceeecHHHHHHHHHHcCCc
Confidence 1 1223466776652 334455444332221110000 0000000000000 00000000000
Q ss_pred ---HHHHHHHHHHHHHhhhh-HHhhHhHhhhhcCCCCceEEEEE------eccCHHHHHHHHHHHHhcCcccCchhHHh-
Q 000101 1209 ---TEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLR------CRMSAIQSAIYDWIKATGTLRVDPEDEKR- 1277 (2239)
Q Consensus 1209 ---~ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~K~e~VV~------c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~- 1277 (2239)
........+.+...|+. +++.+-+.-+.. +....+|. .+-..+..-+.+.+.....+.+.......
T Consensus 288 ~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~---d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a 364 (796)
T PRK12906 288 NLYDSENTALAHHIDQALRANYIMLKDIDYVVQ---DGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLA 364 (796)
T ss_pred cccCchhhhHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeee
Confidence 00000112223333333 233333322222 12222221 01112334444444443333322211100
Q ss_pred -----hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhh-HhhcccHHHHHHHHHHHHHhcCCeEE
Q 000101 1278 -----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDF-LVKSCGKLWILDRILIKLQRTGHRVL 1347 (2239)
Q Consensus 1278 -----~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~-Li~~SGKLelLdrIL~kLkatGhKVL 1347 (2239)
...+......+........-..++++-+.+.+..|...... .+. ......|+..|...+..+...+..||
T Consensus 365 ~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvL 444 (796)
T PRK12906 365 TITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVL 444 (796)
T ss_pred eehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 00000000000000111223456676666655544432211 111 12234588888888888888999999
Q ss_pred EEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC---cCc-----eEE
Q 000101 1348 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---SAD-----TVI 1419 (2239)
Q Consensus 1348 IFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq---aAD-----tVI 1419 (2239)
|||..+...+.|...|...|+++..|+|.....++..+...|.. +. |+|+|+.+|+|+|+. .+. +||
T Consensus 445 I~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI 519 (796)
T PRK12906 445 VGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATNMAGRGTDIKLGPGVKELGGLAVI 519 (796)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEeccccCCCCCCCCcchhhhCCcEEE
Confidence 99999999999999999999999999999886666666665553 22 899999999999995 677 999
Q ss_pred EcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1420 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1420 ifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
.++.|-|...|.|+.||++|.|.......| ++.++.+.
T Consensus 520 ~te~pes~ri~~Ql~GRtGRqG~~G~s~~~--~sleD~l~ 557 (796)
T PRK12906 520 GTERHESRRIDNQLRGRSGRQGDPGSSRFY--LSLEDDLM 557 (796)
T ss_pred eeecCCcHHHHHHHhhhhccCCCCcceEEE--EeccchHH
Confidence 999999999999999999999988766443 23344443
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=182.09 Aligned_cols=305 Identities=19% Similarity=0.247 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHHCCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKWLPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs-QW~~Ef~KwaPsl 1076 (2239)
+-.|-|+.+++-+..=..... .-+||-++|-|||=.|+-.+-. .-...+-+.|+||+.+|. |-.+.|...+.++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFk---AV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f 670 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFK---AVMDGKQVAVLVPTTLLAQQHYETFKERFAGF 670 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHH---HhcCCCeEEEEcccHHhHHHHHHHHHHHhcCC
Confidence 566889999988887555443 3499999999999887543321 123446799999999665 4555566655544
Q ss_pred ceEE----EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc-e
Q 000101 1077 SCIY----YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvv----y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~-r 1151 (2239)
-+-+ -.-+..+.+.+...+..+..||||.|+..|.++..+ .+..+|||||=||+. -+.-..|+.+++. .
T Consensus 671 PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~VD 744 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRANVD 744 (1139)
T ss_pred CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhccCc
Confidence 3322 334566777888889999999999999998877543 357899999999984 3445567777665 4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.|-||||||..+|.= +|.. ++.|.-+
T Consensus 745 vLTLSATPIPRTL~M--sm~G-------------------------------------------iRdlSvI--------- 770 (1139)
T COG1197 745 VLTLSATPIPRTLNM--SLSG-------------------------------------------IRDLSVI--------- 770 (1139)
T ss_pred EEEeeCCCCcchHHH--HHhc-------------------------------------------chhhhhc---------
Confidence 788999999887531 1100 0111111
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
.-||.....|..-..+..
T Consensus 771 ------~TPP~~R~pV~T~V~~~d-------------------------------------------------------- 788 (1139)
T COG1197 771 ------ATPPEDRLPVKTFVSEYD-------------------------------------------------------- 788 (1139)
T ss_pred ------cCCCCCCcceEEEEecCC--------------------------------------------------------
Confidence 123332222221111100
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHHH
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL~~F 1389 (2239)
...+-..|+.++. .|..|-.-++.+..+..+...|+.. ..++...||.|+..+-++++..|
T Consensus 789 ----------------~~~ireAI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 789 ----------------DLLIREAILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred ----------------hHHHHHHHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 0011123344444 3556766678888888888888765 56788999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEE
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
-+++-+ +|+||-.-..|||+++|||+|+-+.+ +--++..|--||++|-..+--++.+
T Consensus 852 ~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 852 YNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred HcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEe
Confidence 976555 79999999999999999999999988 7889999999999997755444433
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=185.94 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
-+.|+.++..+....+.+|+.+..+|+.+|+++++|+||.+ |+.||||.+|+.+|+.++|.++.+|+.||.|||+||+.
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~i-Ik~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~ 222 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEI-IKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL 222 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChhee-ecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 44688888888888999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||.++|.||.+|..|.++|...++...+
T Consensus 223 yN~~~s~v~~~a~~l~~~~~~~i~~~~~ 250 (371)
T COG5076 223 YNGPDSSVYVDAKELEKYFLKLIEEIPE 250 (371)
T ss_pred ccCCCcchhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999999999997666
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=170.48 Aligned_cols=409 Identities=17% Similarity=0.244 Sum_probs=232.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH---HHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN---WKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQ---W~~Ef~KwaPs 1075 (2239)
..++-|+-|.--| +.|.|.-..||.|||++++..+. +....+ ..+-||+|+. |..+ |...+-+++ +
T Consensus 81 ~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~-l~aL~G--~~V~IvTpn~yLA~rd~e~~~~l~~~L-G 150 (830)
T PRK12904 81 RHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAY-LNALTG--KGVHVVTVNDYLAKRDAEWMGPLYEFL-G 150 (830)
T ss_pred CCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHH-HHHHcC--CCEEEEecCHHHHHHHHHHHHHHHhhc-C
Confidence 4445588886433 23558889999999998765543 222222 2466999988 4455 444444444 5
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hh-------hcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
+.+.+..|......+. .....+|+++|...|--| +. .+....+.++||||++.|. +..
T Consensus 151 lsv~~i~~~~~~~er~----~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL---------IDe 217 (830)
T PRK12904 151 LSVGVILSGMSPEERR----EAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL---------IDE 217 (830)
T ss_pred CeEEEEcCCCCHHHHH----HhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe---------ecc
Confidence 6666666643322211 112479999999888322 11 1234578999999999984 111
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCCh------------------HHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------KAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~------------------k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
+..-|++||.+- ...++|..++-+-..+-... ....+.|.. +. +.
T Consensus 218 --ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~-----------~~--ly 280 (830)
T PRK12904 218 --ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-----------EN--LY 280 (830)
T ss_pred --CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCC-----------cc--cc
Confidence 223466777643 22456655554433221110 001111110 00 00
Q ss_pred HHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh---
Q 000101 1209 TEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR--- 1277 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~--- 1277 (2239)
........+.+...|+.. ++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 281 ~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~I 356 (830)
T PRK12904 281 DPENIALVHHLNQALRAHELFKRDVDYIVK---DGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASI 356 (830)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeee
Confidence 011111233334444432 33333333222 12222222 222 2333444444443333222211100
Q ss_pred ---hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhhH-hhcccHHHHHHHHHHHHHhcCCeEEEE
Q 000101 1278 ---RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRVLLF 1349 (2239)
Q Consensus 1278 ---~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~L-i~~SGKLelLdrIL~kLkatGhKVLIF 1349 (2239)
...+......+...+.......|.++-+-+.+..|...... .+.+ .....|+..+...+.++...|..||||
T Consensus 357 t~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 357 TFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVG 436 (830)
T ss_pred eHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 00000000000001111223466777666655544432111 1111 233468999999998888899999999
Q ss_pred EccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC--------------
Q 000101 1350 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA-------------- 1415 (2239)
Q Consensus 1350 SQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA-------------- 1415 (2239)
|......+.|..+|...|+++..|+|. ..+|+..|..|....+. |+|+|+.+|+|+|+.-.
T Consensus 437 t~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~ 511 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALLEEE 511 (830)
T ss_pred eCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhhhhh
Confidence 999999999999999999999999995 67999999999864444 89999999999997743
Q ss_pred ------------------------ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1416 ------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1416 ------------------------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
=+||.-..+-|-..+.|..||++|-|.......|. +.|+.+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l--SleD~l~ 577 (830)
T PRK12904 512 TEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL--SLEDDLM 577 (830)
T ss_pred hhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE--EcCcHHH
Confidence 37888899999999999999999999887765543 3454443
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-15 Score=183.59 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Ps 1075 (2239)
.+|||||..+++-..+.+..+.+|=|-..+|+|||.+++-+...+.. ..+|++||.- ||+|-.+|...-. +-
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 48999999999999999988888878888999999999988877654 5789999964 8877444432211 11
Q ss_pred CceEEEecchhhH------------------HHHHHH----HhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccc
Q 000101 1076 VSCIYYVGAKDQR------------------SRLFSQ----VAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1076 lkvvvy~Gskd~R------------------k~l~~~----i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAH 1131 (2239)
-...++...+-.| +.++.. .+..+--||++||+.+-.- .....--.|++|||||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1112221111111 111111 2334556999999998653 334455689999999999
Q ss_pred cccC------hhhHHHHHh--hccccceEEEecCCC
Q 000101 1132 RMKD------RESVLARDL--DRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1132 rIKN------~~SKlskaL--k~Lka~rRLLLTGTP 1159 (2239)
|--. ..+..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9632 222222221 134677899999998
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=170.81 Aligned_cols=321 Identities=21% Similarity=0.259 Sum_probs=213.7
Q ss_pred hhhhHhhhhhhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH-HhCCCCCeEEEe
Q 000101 979 YSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME-FKGNYGPHLIIV 1057 (2239)
Q Consensus 979 y~lah~i~E~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie-~k~~~GP~LIVV 1057 (2239)
|.+-.+|.++...+| .|.|.+.+..++. +...+--.-||+|||...+..+...+. .....-+.||+.
T Consensus 30 ~~v~raI~kkg~~~p--------tpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 30 YKVLRAIHKKGFNTP--------TPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred HHHHHHHHHhhcCCC--------Cchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 345556666666555 3567777665554 333333456999999988876655443 222334789999
Q ss_pred chH-HHHHHHHHHHHHCC--CCceE-EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccc
Q 000101 1058 PNA-VLVNWKSELHKWLP--SVSCI-YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQ 1131 (2239)
Q Consensus 1058 P~S-LLsQW~~Ef~KwaP--slkvv-vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAH 1131 (2239)
|+. |..|-.+-++.+.. .+... +|.|..-+ +++ . ....+.+|||+|++.+..... .|.-....|||+||++
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~e-eqf-~-~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIE-EQF-I-LLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHH-HHH-H-HhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 987 66665444444432 34444 44444322 222 1 233478999999998865432 2444567899999999
Q ss_pred ccc--ChhhHHHHHhhccccce-EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1132 RMK--DRESVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1132 rIK--N~~SKlskaLk~Lka~r-RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
+|- .+.-.+...|.+++..+ .+++|||- .+.| . +|.+ .|
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~l------v------------~fak--------aG----------- 216 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDL------V------------DFAK--------AG----------- 216 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhh------H------------HHHH--------cc-----------
Confidence 994 36678888898886554 78889992 1111 1 1111 00
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHH
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1288 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k 1288 (2239)
+..|.++| -||+. ..++.-
T Consensus 217 -------------l~~p~lVR---ldvet------------kise~l--------------------------------- 235 (529)
T KOG0337|consen 217 -------------LVPPVLVR---LDVET------------KISELL--------------------------------- 235 (529)
T ss_pred -------------CCCCceEE---eehhh------------hcchhh---------------------------------
Confidence 11111111 01110 000000
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCC
Q 000101 1289 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368 (2239)
Q Consensus 1289 ~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGi 1368 (2239)
+++. +.+....|...|..|+..... .++.|||+....+++++...|+..|+
T Consensus 236 ----------k~~f------------------~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~ 286 (529)
T KOG0337|consen 236 ----------KVRF------------------FRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGG 286 (529)
T ss_pred ----------hhhe------------------eeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCC
Confidence 0000 011223377777777776543 56899999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1369 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1369 ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
....+.|++....|..-+.+|+..... +|++|++|.+|+|++-.|+||+||.|-.+..|.+|+||+.|.|.+..
T Consensus 287 ~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 287 EGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred CccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 999999999999999999999865444 89999999999999999999999999999999999999999997644
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-14 Score=150.20 Aligned_cols=166 Identities=27% Similarity=0.284 Sum_probs=118.3
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~KwaPsl 1076 (2239)
..++++||.+++.+++... .++++..++|+|||..++.++...+... ...++||++| ..++.+|..++..+++..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRG-KGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhccc-CCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3589999999999888521 6889999999999998888877766532 2468999999 558899999999998763
Q ss_pred ---ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhcc-c
Q 000101 1077 ---SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY-R 1148 (2239)
Q Consensus 1077 ---kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L-k 1148 (2239)
....+.+... ...........++|+++||+.+...... +...+|++|||||+|.+.+ ........+..+ .
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 159 (201)
T smart00487 82 GLKVVGLYGGDSK--REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK 159 (201)
T ss_pred CeEEEEEeCCcch--HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc
Confidence 2333444322 2222334444459999999999877554 4556789999999999985 333444444444 5
Q ss_pred cceEEEecCCCCCCCHHHHHH
Q 000101 1149 CQRRLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1149 a~rRLLLTGTPIQNnL~ELws 1169 (2239)
..+++++||||..+.-...+.
T Consensus 160 ~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 160 NVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred cceEEEEecCCchhHHHHHHH
Confidence 678899999997444333333
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=142.54 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
|.+|++.|... .++..|...|....+|+||.+ |.+||||.+|.+||+.+.|.++++|..||.+||.||+.||+
T Consensus 1 C~~il~~l~~~------~~~~~F~~~~~~~~~p~y~~~-i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~ 73 (84)
T PF00439_consen 1 CREILEELMKH------PISSPFSKPVDPKEYPDYYEI-IKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNP 73 (84)
T ss_dssp HHHHHHHHHTS------TTGGGGSSSTHTTTSTTHHHH-SSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHcC------CCchhhcCCCChhhCCCHHHH-HhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 88999988554 389999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHH
Q 000101 2022 FSHEVRSEARK 2032 (2239)
Q Consensus 2022 ~~sev~~dA~~ 2032 (2239)
++|.+|.+|++
T Consensus 74 ~~s~~~~~A~~ 84 (84)
T PF00439_consen 74 PDSPIYKAAEK 84 (84)
T ss_dssp TTSHHHHHHHH
T ss_pred CcCHHHHHhcC
Confidence 99999999974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-13 Score=172.75 Aligned_cols=114 Identities=22% Similarity=0.199 Sum_probs=103.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
..+++..|...|..+...+.+|||||.....++.|.++|...|+.+..+||.++..+|.+++..|..+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 3567888888888888889999999999999999999999999999999999999999999999986433 3789999
Q ss_pred ccccccCCCcCceEEEcC-----CCCCcchHHHhhhhhcccC
Q 000101 1405 AAGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifD-----ppWNP~~dlQAiGRAhRIG 1441 (2239)
.+++|++++.+++||++| .+-+...++|++||++|..
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC
Confidence 999999999999999999 5668889999999999974
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-14 Score=145.87 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=84.0
Q ss_pred HHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000101 1945 VISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSH 2024 (2239)
Q Consensus 1945 vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~s 2024 (2239)
++..+..-..++.--.+++|.+-|++.+.|+||.+ |++||||.+|++||+.++|.+++||.+||+|||+||+.||+++|
T Consensus 8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRL-IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHhcCcccccccccccccCchhccCCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 33444444456666689999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000101 2025 EVRSEARKVHDLFFDLL 2041 (2239)
Q Consensus 2025 ev~~dA~~L~~~f~~~~ 2041 (2239)
.+|..|+.|...-..-|
T Consensus 87 ~~~~~A~~l~~d~~~el 103 (109)
T cd05492 87 EQYDAARWLYRDTCHDL 103 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999876655443
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=176.18 Aligned_cols=105 Identities=16% Similarity=0.110 Sum_probs=85.1
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCe---EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGik---y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
....+|||+.....++.+.+.|...++. ++.|||+++.++|.++++.+ + .+-|||+|+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g-~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----S-GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----C-CeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999988765 67899999999999987653 2 24479999999999999999999
Q ss_pred EEcC---------------CCCCc---chHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1419 IIYD---------------PDPNP---KNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1419 IifD---------------ppWNP---~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
|.++ .+..| ..+.||.||++|.+ +-.+|+|++-
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte 410 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSE 410 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCH
Confidence 9985 23333 67999999999984 3445666653
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-12 Score=148.12 Aligned_cols=311 Identities=17% Similarity=0.197 Sum_probs=205.9
Q ss_pred cccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 995 MLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 995 ~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
+-..|+|-++|..+-+-++..+.+....|+..-+|.|||-+....|.+.+. ..+.+.|..|.- ++..-...|..-+
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhh
Confidence 335789999999999999999999999999999999999888888877664 446788888854 7777777788888
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc-ChhhHHHHHhhcc--ccc
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK-DRESVLARDLDRY--RCQ 1150 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK-N~~SKlskaLk~L--ka~ 1150 (2239)
++..+.+.+|..+.. + ...+||+|-..+.+.. ..||+|||||.+.+- ..+-.+..+++.- ...
T Consensus 169 ~~~~I~~Lyg~S~~~------f---r~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 169 SNCDIDLLYGDSDSY------F---RAPLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred ccCCeeeEecCCchh------c---cccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 888877777765431 1 2345555555554443 368999999999872 2223344444432 234
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-HHhh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLR 1229 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP-FmLR 1229 (2239)
.+|.|||||-. .+.+.+. +.-+++ .+-+
T Consensus 235 ~~IylTATp~k----------------------~l~r~~~-----------------------------~g~~~~~klp~ 263 (441)
T COG4098 235 ATIYLTATPTK----------------------KLERKIL-----------------------------KGNLRILKLPA 263 (441)
T ss_pred ceEEEecCChH----------------------HHHHHhh-----------------------------hCCeeEeecch
Confidence 58999999821 1111000 000000 0111
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
|.- .+.||-. ..+++. .+-+. ++
T Consensus 264 RfH---~~pLpvP--kf~w~~--~~~k~---------------------------------------l~----------- 286 (441)
T COG4098 264 RFH---GKPLPVP--KFVWIG--NWNKK---------------------------------------LQ----------- 286 (441)
T ss_pred hhc---CCCCCCC--ceEEec--cHHHH---------------------------------------hh-----------
Confidence 110 1123322 112211 00000 00
Q ss_pred CCCCccccchhhHhhcccHHH-HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CC-eEEeecCCCCHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QL-VYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLe-lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Gi-ky~RLDGsts~eeRqeiL 1386 (2239)
-.|+. .|.++|.+...+|..+|||.....+++-+...|+.. +. ....+|... ..|.+.+
T Consensus 287 ----------------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV 348 (441)
T COG4098 287 ----------------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKV 348 (441)
T ss_pred ----------------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHH
Confidence 01232 467788888889999999999999999999999433 22 234455543 5799999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCC--CCcchHHHhhhhhcccCCc--ceEEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQK--REVKVIYM 1451 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDpp--WNP~~dlQAiGRAhRIGQk--KeV~VyrL 1451 (2239)
+.|+++..+ +|++|....+|+.++.+|++|+=.-. ++-...+|--||++|--.. .+|..|.+
T Consensus 349 ~~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 349 EAFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 999975444 89999999999999999999886555 8889999999999996443 44555554
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=161.09 Aligned_cols=418 Identities=16% Similarity=0.214 Sum_probs=233.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-H---HHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-V---NWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-s---QW~~Ef~KwaPs 1075 (2239)
..++-|+.|---|. .|-|.-..||.|||++++..+. +....+ ..++||+|+.-| . .|...|.+|+ +
T Consensus 82 ~~ydVQliGgl~L~------~G~IaEm~TGEGKTL~a~lp~~-l~al~g--~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD------SNRIAEMRTGEGKTLTATLPAY-LNALTG--KGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CcCchHHhcchHhc------CCccccccCCCCchHHHHHHHH-HHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 34445887764442 3557778999999998765553 322222 358999998844 3 3888888886 5
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh----h-----hhcccCCceEEEecccccccChhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD----R-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD----~-----s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~ 1146 (2239)
+.+.+..+..... ........+|+++|...|-.| . ..+....+.++||||++.+.-..
T Consensus 152 lsv~~i~~~~~~~----~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDE--------- 218 (908)
T PRK13107 152 LTVGINVAGLGQQ----EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDE--------- 218 (908)
T ss_pred CeEEEecCCCCHH----HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcccc---------
Confidence 6665555543321 113334779999998887322 1 11122578899999999885322
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCC----hHHHHh--hhcCCcccCCCCCCCChhh--------------
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN----RKAFHD--WFSQPFQKEGPTHNADDDW-------------- 1206 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s----~k~F~e--~F~kPf~~~g~~~~~e~d~-------------- 1206 (2239)
+..-|++||.+ ... .++|..++.+...+... .+.|.. .|...- ......-++...
T Consensus 219 --ArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~ide-k~~~v~LTe~G~~~~e~~l~~~~~~~ 293 (908)
T PRK13107 219 --ARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDE-KAKQVHFTERGQEKVENLLIERGMLA 293 (908)
T ss_pred --CCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEec-CCCeeeechHHHHHHHHHHHhCCccc
Confidence 22347778754 322 55666555332221100 000000 000000 000000000000
Q ss_pred ----HHHHHHHHHHHHHHHhhhhHHh-hHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchh
Q 000101 1207 ----LETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1274 (2239)
Q Consensus 1207 ----l~~ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ 1274 (2239)
+........++.+...|+.+.+ .+-+.-|.. +....+|. +.| .+..-+.+.|.....+.+....
T Consensus 294 ~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGRim~grrwsdGLHQaIEaKE~v~I~~e~ 369 (908)
T PRK13107 294 EGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ---DNEVIIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVHIQNEN 369 (908)
T ss_pred CcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHhcCCCCCCCc
Confidence 0000011123333344443322 222222211 11111111 111 2333444444443322222111
Q ss_pred HHhhhhcChhhH--HHHHHHH-------HHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHH
Q 000101 1275 EKRRVQKNPIYQ--AKVYKTL-------NNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQ 1340 (2239)
Q Consensus 1275 ek~~l~k~~~~~--~k~~ksL-------~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLk 1340 (2239)
. .+..- .++ -+.|..| ...-..|.++-+.+.+..|..... ..........|+..+.+-+.++.
T Consensus 370 ~--t~AsI-T~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~ 446 (908)
T PRK13107 370 Q--TLASI-TFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR 446 (908)
T ss_pred e--eeeee-hHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH
Confidence 0 00000 000 0001111 111234666655555544432211 11112233568888888888889
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc------
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------ 1414 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa------ 1414 (2239)
+.|..|||||......+.|..+|...|+++..|++.....+|..+...|+.+ . ++|+|+.+|+|+|+.=
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G--~---VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG--A---VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC--c---EEEecCCcCCCcceecCCchHH
Confidence 9999999999999999999999999999999999999999999999999863 3 8999999999999772
Q ss_pred -------------------------------CceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1415 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1415 -------------------------------ADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
-=+||.-..+-|-..+.|..||++|-|......+| ++.|+.+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~--lSlED~L~ 595 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY--LSMEDSLM 595 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE--EEeCcHHH
Confidence 23789999999999999999999999988765444 23455544
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=176.09 Aligned_cols=310 Identities=18% Similarity=0.170 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
..||-|.++|.-.+. +..+++-..||-||.+....... -..|-+|||.|+- |+.-...-+.+ .++..
T Consensus 264 ~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 264 GFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred cCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 699999999985555 77788889999999977643322 1234789999965 66555544532 24444
Q ss_pred EEEecc--hhhHHHHHHHHhhc--CccEEEEehhHHHHhhhhc---c-cC---CceEEEecccccccCh-------hhHH
Q 000101 1079 IYYVGA--KDQRSRLFSQVAAL--KFNVLVTTYEFIMYDRSKL---S-KV---DWKYIIIDEAQRMKDR-------ESVL 1140 (2239)
Q Consensus 1079 vvy~Gs--kd~Rk~l~~~i~~~--kfdVVITTYE~L~kD~s~L---~-ki---kWd~VIIDEAHrIKN~-------~SKl 1140 (2239)
....+. ..++...+..+..+ .++|+..|+|.+......+ . .. -..++||||||....+ ..++
T Consensus 332 ~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred eeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 455444 34455666667766 7899999999997653221 1 11 2689999999987542 2233
Q ss_pred HHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000101 1141 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1220 (2239)
Q Consensus 1141 skaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLh 1220 (2239)
.....++...-.|+||||--..--.|+...|++-+|.+|.+ -|+.+
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~---------------------------- 457 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP---------------------------- 457 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC----------------------------
Confidence 33334555556899999987788888888888877775432 12111
Q ss_pred HhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1221 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1221 klLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
...+-|.-..+ .. .+...+...
T Consensus 458 ---------------------NL~yeV~~k~~--~~-----------------------------------~~~~~~~~~ 479 (941)
T KOG0351|consen 458 ---------------------NLKYEVSPKTD--KD-----------------------------------ALLDILEES 479 (941)
T ss_pred ---------------------CceEEEEeccC--cc-----------------------------------chHHHHHHh
Confidence 00011110000 00 000001111
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHH
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~e 1380 (2239)
+ ....+.-.||||.....++.+...|...|+....+|.+++..
T Consensus 480 ~-------------------------------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~ 522 (941)
T KOG0351|consen 480 K-------------------------------------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPK 522 (941)
T ss_pred h-------------------------------------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHH
Confidence 1 112355789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+|..+-..|..+. + .+++.|=|.|-|||-+++..||+|..|-+-.-|.|-.|||+|-|+...+.+|+-..
T Consensus 523 ~R~~Vq~~w~~~~--~-~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 523 ERETVQKAWMSDK--I-RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHhcCC--C-eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999754 3 36889999999999999999999999999999999999999999998887776543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=137.47 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=100.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC-CCceEEEecchhhHHHHHHHHhhc
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP-SVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaP-slkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
++++..++|+|||.+++.++..+... ...+++||+||... +.+|...+..|.. .+.+.++.+........ .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--KLLSG 78 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--HHhcC
Confidence 57999999999999999999888764 45679999999885 5556677777775 46666666655443332 23345
Q ss_pred CccEEEEehhHHHHhhhh--cccCCceEEEecccccccChhhHHH---HHhhccccceEEEecCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRESVLA---RDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~~SKls---kaLk~Lka~rRLLLTGTP 1159 (2239)
..+|+|+||+.+...... +....|++|||||+|.+.+...... .........++++|||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999988766433 2345799999999999987655443 333445777899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-12 Score=167.03 Aligned_cols=112 Identities=22% Similarity=0.246 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
.+++..|...|..+...+.+|||||.....++.|..+|...|+++..+||.++..+|..++..|..+. + .+|++|.+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i-~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--F-DVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--c-eEEEEeCH
Confidence 46777888888888888999999999999999999999999999999999999999999999998643 2 36899999
Q ss_pred cccccCCCcCceEEEcCC-----CCCcchHHHhhhhhccc
Q 000101 1406 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDp-----pWNP~~dlQAiGRAhRI 1440 (2239)
+++|++++.+++||++|. +-++..|+|++||++|-
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 999999999999999997 46889999999999994
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=132.97 Aligned_cols=78 Identities=32% Similarity=0.535 Sum_probs=73.5
Q ss_pred HHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhccc
Q 000101 1361 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1361 d~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRI 1440 (2239)
.+|...++.+..+||+++.++|..+++.|+.++. .+|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999997555 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000101 1441 G 1441 (2239)
Q Consensus 1441 G 1441 (2239)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=173.80 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=85.1
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC---CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG---iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
....||||+.....++.+.+.|...+ +.++.|||+++.++|.++++.+. .+-|||||+++.+||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-----~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-----GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-----CceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 45888999999999998855432 23479999999999999999999
Q ss_pred EEcCCC----C--------------CcchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1419 IIYDPD----P--------------NPKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1419 IifDpp----W--------------NP~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
|.++.. + +-..+.||.||++|.| +-.+|+|++-
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 998732 1 3458999999999998 4456677663
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-11 Score=154.97 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=113.0
Q ss_pred HHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEe
Q 000101 1298 MELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1372 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~R 1372 (2239)
..|.++-+.+.+..|..... ..........|+..+..-+..+...|..|||-|.++...+.|..+|...|+++..
T Consensus 518 ~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~v 597 (970)
T PRK12899 518 REFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTV 597 (970)
T ss_pred HHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCccee
Confidence 45666666655554443221 1111223346888888888888899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC--------ceEEEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1373 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1373 LDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA--------DtVIifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
|+-.-. +.-..+|.+- +..-.|.|+|..+|+|.|+.-. =+||.-..+-|...+.|..||++|-|...
T Consensus 598 LNak~~-~~Ea~iia~A----G~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpG 672 (970)
T PRK12899 598 LNAKNH-AQEAEIIAGA----GKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPG 672 (970)
T ss_pred cccchh-hhHHHHHHhc----CCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCC
Confidence 988633 2333455432 2333589999999999997643 37899999999999999999999999887
Q ss_pred eEEEEEEehhhhhhh
Q 000101 1445 EVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1445 eV~VyrLvaVEEkI~ 1459 (2239)
....| ++.|+.+.
T Consensus 673 ss~f~--lSlEDdL~ 685 (970)
T PRK12899 673 AAKFF--LSFEDRLM 685 (970)
T ss_pred ceeEE--EEcchHHH
Confidence 76554 23455544
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-10 Score=152.88 Aligned_cols=127 Identities=19% Similarity=0.265 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+..|...+..+...+..|||||.++...+.|..+|...|+++..||+ ...+|+..|..|....+ .|+|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccC
Confidence 35889999999888889999999999999999999999999999999997 67899999999986444 48999999
Q ss_pred cccccCCCcCc--------eEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1406 AGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1406 GGeGLNLqaAD--------tVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|....... |++.++.+.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fvSleD~Lm 715 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YVSLEDELM 715 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--EechhHHHH
Confidence 99999999433 44889999999999999999999998866533 344555554
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=148.28 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy 1081 (2239)
+-|..++.-++. .+....++..||.||++..-... |+. .|-++||.|.- |+.....-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 578889888875 34557899999999997764332 221 23578888965 666566666554322222222
Q ss_pred ecchhhHHHHHHHHhhcCc--cEEEEehhHHHHh-----hhhc-ccCCceEEEecccccccCh------hhHHHHHhhc-
Q 000101 1082 VGAKDQRSRLFSQVAALKF--NVLVTTYEFIMYD-----RSKL-SKVDWKYIIIDEAQRMKDR------ESVLARDLDR- 1146 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kf--dVVITTYE~L~kD-----~s~L-~kikWd~VIIDEAHrIKN~------~SKlskaLk~- 1146 (2239)
.-+..+|.++...+...+. .++..|++....+ ...| ......|+||||||.+... .....-.|+.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 3355678888777665554 4677888876543 2223 3346789999999988432 2222222322
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcc-cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhh
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV-FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1225 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~i-F~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrP 1225 (2239)
+..--.++||||--..--+|++..|.+-.|-. |.+ ..|...+
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NL------------------------------------ 216 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNL------------------------------------ 216 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhh------------------------------------
Confidence 23334688999977777778888887766632 221 1222110
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
+|+..... .+..-+..|.-.|.
T Consensus 217 --------------------------------FYD~~~K~--------------------------~I~D~~~~LaDF~~ 238 (641)
T KOG0352|consen 217 --------------------------------FYDNHMKS--------------------------FITDCLTVLADFSS 238 (641)
T ss_pred --------------------------------hHHHHHHH--------------------------HhhhHhHhHHHHHH
Confidence 11100000 00000001111111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1385 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqei 1385 (2239)
|.+-....+.+.. | .-..=-||||..++.++.|+-.|..+||....+|.+.+..+|..+
T Consensus 239 ~~LG~~~~~~~~~---------K------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 239 SNLGKHEKASQNK---------K------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HhcCChhhhhcCC---------C------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 1111000000000 0 001125999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1386 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1386 L~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
-+.|-.++.+ +|+.|-..|.|+|-+++..||+.|++-|..-|.|--||++|-|-..-++.||-
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 9999876665 78899999999999999999999999999999999999999998888999875
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-12 Score=154.66 Aligned_cols=309 Identities=19% Similarity=0.182 Sum_probs=199.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHH-HHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM-ALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAI-ALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
+|.|-|.-+|..-+ -++.|-++...|++|||+++= |-|..++ ...+.+|++||.- |..|=..+|.+-+..
T Consensus 216 eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 79999999886433 246777899999999998752 2233333 3457899999987 555566678776643
Q ss_pred CceEEEecchhhHHHH--HHHHhhcCccEEEEehhHHHHhhhh-cccCCceEEEecccccccC--hhhHHHHH---hhcc
Q 000101 1076 VSCIYYVGAKDQRSRL--FSQVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKD--RESVLARD---LDRY 1147 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l--~~~i~~~kfdVVITTYE~L~kD~s~-L~kikWd~VIIDEAHrIKN--~~SKlska---Lk~L 1147 (2239)
+++.+-+|....+..- ..-....+.+|+|.||+-+-..... -.--+...|||||.|.+.. ....+--. |+.+
T Consensus 290 lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l 369 (830)
T COG1202 290 LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL 369 (830)
T ss_pred ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHh
Confidence 4555566765443321 1112235679999999876432111 1123678999999999965 23333222 3333
Q ss_pred -ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1148 -RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1148 -ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
.....+.||||- .|+.||..-|+.-+. .
T Consensus 370 ~~~AQ~i~LSATV--gNp~elA~~l~a~lV-----------------~-------------------------------- 398 (830)
T COG1202 370 FPGAQFIYLSATV--GNPEELAKKLGAKLV-----------------L-------------------------------- 398 (830)
T ss_pred CCCCeEEEEEeec--CChHHHHHHhCCeeE-----------------e--------------------------------
Confidence 446789999993 444555433221000 0
Q ss_pred HhhHhHhhhhcCCC-CceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1227 MLRRRVEDVEGSLP-PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1227 mLRRlKkDVekdLP-~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
-..-| |...++++|.-...
T Consensus 399 ---------y~~RPVplErHlvf~~~e~e--------------------------------------------------- 418 (830)
T COG1202 399 ---------YDERPVPLERHLVFARNESE--------------------------------------------------- 418 (830)
T ss_pred ---------ecCCCCChhHeeeeecCchH---------------------------------------------------
Confidence 00011 12223444421111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHH----HhcC--CeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL----QRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kL----katG--hKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ 1379 (2239)
|..++.+++..- ...| ..+|||+..+.-+..|+++|..+|++...+|++++.
T Consensus 419 ----------------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y 476 (830)
T COG1202 419 ----------------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPY 476 (830)
T ss_pred ----------------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcH
Confidence 111111111110 1123 358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----c-CCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----Y-DPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----f-DppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
.+|..+-..|.+.+-. .+++|.|.+-|+|+++ +.||| + .-|.+|..|.|-.|||+|.+=...-.||.+
T Consensus 477 ~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 477 KERKSVERAFAAQELA---AVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred HHHHHHHHHHhcCCcc---eEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 9999999999975555 6899999999999995 34443 3 345599999999999999986644455555
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=157.81 Aligned_cols=299 Identities=19% Similarity=0.176 Sum_probs=178.1
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHHHHCC--CCceEEEec
Q 000101 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCIYYVG 1083 (2239)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-------~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--slkvvvy~G 1083 (2239)
..|..+.|.|+|..||+|||..|...|+.++..+ .+.-.++.|+|.. |+......|.+-+. ++.|.-+.|
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTG 200 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTG 200 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecC
Confidence 3567889999999999999999988888877531 2334789999965 55444444444444 677888888
Q ss_pred chhhHHHHHHHHhhcCccEEEEehhHHHH-------hhhhcccCCceEEEecccccccChh-----hHHHHHhhcc----
Q 000101 1084 AKDQRSRLFSQVAALKFNVLVTTYEFIMY-------DRSKLSKVDWKYIIIDEAQRMKDRE-----SVLARDLDRY---- 1147 (2239)
Q Consensus 1084 skd~Rk~l~~~i~~~kfdVVITTYE~L~k-------D~s~L~kikWd~VIIDEAHrIKN~~-----SKlskaLk~L---- 1147 (2239)
....-+. .....+|+|||+|.+-- +...+ -...+|||||.|.+.... +-+++++...
T Consensus 201 D~ql~~t-----ei~~tqiiVTTPEKwDvvTRk~~~d~~l~--~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessq 273 (1230)
T KOG0952|consen 201 DTQLTKT-----EIADTQIIVTTPEKWDVVTRKSVGDSALF--SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQ 273 (1230)
T ss_pred cchhhHH-----HHHhcCEEEecccceeeeeeeeccchhhh--hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhh
Confidence 7543221 13467999999987621 11111 146799999999997643 3445555332
Q ss_pred ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1148 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
..-+.++||||- -|..| +-.||....+...-.|+..| +|.-
T Consensus 274 s~IRivgLSATl--PN~eD---vA~fL~vn~~~glfsFd~~y----------------------------------RPvp 314 (1230)
T KOG0952|consen 274 SMIRIVGLSATL--PNYED---VARFLRVNPYAGLFSFDQRY----------------------------------RPVP 314 (1230)
T ss_pred hheEEEEeeccC--CCHHH---HHHHhcCCCccceeeecccc----------------------------------cccc
Confidence 234678899992 13333 33444433322222333322 1111
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccC--HHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMS--AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS--~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
|+ ..++-++.. ..+....+ .
T Consensus 315 L~--------------~~~iG~k~~~~~~~~~~~d-----------------------------------------~--- 336 (1230)
T KOG0952|consen 315 LT--------------QGFIGIKGKKNRQQKKNID-----------------------------------------E--- 336 (1230)
T ss_pred ee--------------eeEEeeecccchhhhhhHH-----------------------------------------H---
Confidence 10 001111000 00000000 0
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc----CCe------------
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLV------------ 1369 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r----Gik------------ 1369 (2239)
.+.++ +.++...||.|+||+..+...--.+..|..+ |..
T Consensus 337 ------------------------~~~~k-v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 337 ------------------------VCYDK-VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred ------------------------HHHHH-HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 01122 2233457899999987766554444444332 222
Q ss_pred -------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcch----------HHH
Q 000101 1370 -------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EEQ 1432 (2239)
Q Consensus 1370 -------y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~----------dlQ 1432 (2239)
+..-|-++.-.+|.-+-+.|..+... +|+||...+.|+||++--.+|-=..-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 12235577888998888899864433 7999999999999997655554455576665 789
Q ss_pred hhhhhcccCCcc
Q 000101 1433 AVARAHRIGQKR 1444 (2239)
Q Consensus 1433 AiGRAhRIGQkK 1444 (2239)
-.|||+|..=.+
T Consensus 469 ifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 469 IFGRAGRPQFDS 480 (1230)
T ss_pred HHhccCCCCCCC
Confidence 999999986443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-12 Score=134.32 Aligned_cols=156 Identities=22% Similarity=0.266 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--CceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--VSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--lkvv 1079 (2239)
|+|.+++.-+.. +.+.|+...+|+|||..++..+...+... ....+||++|.. ++.+-..++.+++.. +.+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987774 67789999999999999987777666433 445899999966 888888999999864 6777
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh--hhHHHHHhhcc---ccceE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY---RCQRR 1152 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L---ka~rR 1152 (2239)
.++|...........+ ....+|+|+|++.+...... +.-.+.++|||||+|.+... .......+..+ ...+.
T Consensus 77 ~~~~~~~~~~~~~~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 7777654322222222 45789999999999876543 22235899999999999652 23333333433 34568
Q ss_pred EEecCCCCCCCHH
Q 000101 1153 LLLTGTPLQNDLK 1165 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ 1165 (2239)
+++||||- .++.
T Consensus 156 i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 156 ILLSATLP-SNVE 167 (169)
T ss_dssp EEEESSST-HHHH
T ss_pred EEEeeCCC-hhHh
Confidence 99999996 4444
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=121.30 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhh
Q 000101 1358 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1437 (2239)
Q Consensus 1358 ILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRA 1437 (2239)
.|.++|...++.+..+||.++.++|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999997543 5899999999999999999999999999999999999999
Q ss_pred cccC
Q 000101 1438 HRIG 1441 (2239)
Q Consensus 1438 hRIG 1441 (2239)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=135.26 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k--~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
.+++||.+++..+.. +.+.|++.++|+|||+.++..+...+... .....+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988876 67889999999999999766655554433 3445789999976 88889999988875
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccc-c
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1149 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lk-a 1149 (2239)
++.+..+.|......... ......+|+|+|++.+..... .+.-..++++||||+|.+.+.. ..+...+..+. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~ 174 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIR--KLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD 174 (203)
T ss_pred CceEEEEECCCCHHHHHH--HhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcc
Confidence 566677777665433321 122478999999988765421 2223467899999999986433 22333344444 3
Q ss_pred ceEEEecCCCC
Q 000101 1150 QRRLLLTGTPL 1160 (2239)
Q Consensus 1150 ~rRLLLTGTPI 1160 (2239)
...+++||||-
T Consensus 175 ~~~~~~SAT~~ 185 (203)
T cd00268 175 RQTLLFSATMP 185 (203)
T ss_pred cEEEEEeccCC
Confidence 55788999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-10 Score=149.66 Aligned_cols=322 Identities=17% Similarity=0.139 Sum_probs=189.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~-k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|.. ++....+.+..++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 56899999999999888777578999999999999999988888765 33456777888977 45667778888776554
Q ss_pred eEEE--ecchhhHHHHHHHHhhcCccEEEEehhHH---------------HHhh------hhcccCCceEEEeccccccc
Q 000101 1078 CIYY--VGAKDQRSRLFSQVAALKFNVLVTTYEFI---------------MYDR------SKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1078 vvvy--~Gskd~Rk~l~~~i~~~kfdVVITTYE~L---------------~kD~------s~L~kikWd~VIIDEAHrIK 1134 (2239)
+... +|.....-...... ..-+.++|+++. .... ..+..+-..++|+||+|-+-
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~---~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQ---DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred cccccccccccchhhhcccc---ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 4443 45433221111100 111333333322 2110 01223445689999999996
Q ss_pred Ch-hh-HHHHHhhccc--cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1135 DR-ES-VLARDLDRYR--CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1135 N~-~S-KlskaLk~Lk--a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
.. .. .+..++..+. ....|++|||+ | ..|.+.+.
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATl----------------P------~~~~~~l~-------------------- 389 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATL----------------P------PFLKEKLK-------------------- 389 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCC----------------C------HHHHHHHH--------------------
Confidence 54 22 2233333332 45688999995 1 11111111
Q ss_pred HHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHH
Q 000101 1211 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 1290 (2239)
Q Consensus 1211 e~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ 1290 (2239)
..+.. . ...+ ...+ .|+
T Consensus 390 ----------~~~~~----~-~~~~---~~~~-----~~~---------------------------------------- 406 (733)
T COG1203 390 ----------KALGK----G-REVV---ENAK-----FCP---------------------------------------- 406 (733)
T ss_pred ----------HHHhc----c-ccee---cccc-----ccc----------------------------------------
Confidence 00000 0 0000 0000 000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeE
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 1370 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky 1370 (2239)
.++.+.+......... .... ..+..++..-...+.+|+|-|+.+..+..+...|+..+.++
T Consensus 407 ------------~~~e~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v 467 (733)
T COG1203 407 ------------KEDEPGLKRKERVDVE------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKV 467 (733)
T ss_pred ------------cccccccccccchhhh------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCE
Confidence 0000000000000000 0000 11222233334568999999999999999999999988889
Q ss_pred EeecCCCCHHHHHHHHHHHhcC-CCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccC--CcceEE
Q 000101 1371 RRIDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKREVK 1447 (2239)
Q Consensus 1371 ~RLDGsts~eeRqeiL~~FNs~-ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIG--QkKeV~ 1447 (2239)
+.||+.++..+|.+.++.+..- ..+-..|+|+|.+...|||+. .|.+|- -.--....+||.||++|-| ....+.
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~ 544 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIY 544 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCcee
Confidence 9999999999999988865531 112234799999999999987 666663 2223456899999999999 445566
Q ss_pred EEEE
Q 000101 1448 VIYM 1451 (2239)
Q Consensus 1448 VyrL 1451 (2239)
|+..
T Consensus 545 v~~~ 548 (733)
T COG1203 545 VYND 548 (733)
T ss_pred Eeec
Confidence 6544
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-10 Score=138.85 Aligned_cols=102 Identities=26% Similarity=0.305 Sum_probs=92.9
Q ss_pred HHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc
Q 000101 1337 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1416 (2239)
Q Consensus 1337 ~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD 1416 (2239)
....+.+.||||-+=...|++-|.+||...|+++..+|..+..-+|.++|.+.+.+.-+ +|+....+-+||||+.+.
T Consensus 440 ~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEVs 516 (663)
T COG0556 440 RKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEVS 516 (663)
T ss_pred HHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCccee
Confidence 33456789999999999999999999999999999999999999999999999975544 799999999999999999
Q ss_pred eEEEcCCCC-----CcchHHHhhhhhcccC
Q 000101 1417 TVIIYDPDP-----NPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1417 tVIifDppW-----NP~~dlQAiGRAhRIG 1441 (2239)
.|.|+|.+- +-...+|-||||.|--
T Consensus 517 LVAIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 517 LVAILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred EEEEeecCccccccccchHHHHHHHHhhcc
Confidence 999999884 8889999999999953
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.9e-11 Score=138.15 Aligned_cols=313 Identities=18% Similarity=0.152 Sum_probs=214.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPslk 1077 (2239)
.+.||.|+.+++-.+. +...+|...+|-||++..-... |. ..|-.|||||. +|+......+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpa--l~----adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPA--LC----ADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhH--Hh----cCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3799999999988776 7778999999999997654332 11 24678999996 477777777777654433
Q ss_pred eEEEecchhhHHHHHHH--HhhcCccEEEEehhHHHHhhh-------hcccCCceEEEecccccccC------hhhHHHH
Q 000101 1078 CIYYVGAKDQRSRLFSQ--VAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKD------RESVLAR 1142 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~--i~~~kfdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrIKN------~~SKlsk 1142 (2239)
.+--..++...++.... .....|.++..|++.+.+... .+....|.+|.|||.|.+.. +..+..-
T Consensus 163 ~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 33333444444433333 234578899999999876533 34445789999999998743 3344444
Q ss_pred Hhh-ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1143 DLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1143 aLk-~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
.|+ .|+....|+||||...+-+.|.-.+|.+-. .-.|..-|+.|-.+.
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~nl~y------------------------- 291 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPNLKY------------------------- 291 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCCcee-------------------------
Confidence 554 577778999999987777766655544310 112233333221110
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
.++.-+
T Consensus 292 -----------------------ev~qkp--------------------------------------------------- 297 (695)
T KOG0353|consen 292 -----------------------EVRQKP--------------------------------------------------- 297 (695)
T ss_pred -----------------------EeeeCC---------------------------------------------------
Confidence 000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHH--HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCH
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1379 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kL--katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~ 1379 (2239)
. .--.++.+|..-+ .-.|..-||||-...-.+-+...|...||..-.+|..+.+
T Consensus 298 ----------------~--------n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep 353 (695)
T KOG0353|consen 298 ----------------G--------NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEP 353 (695)
T ss_pred ----------------C--------ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCc
Confidence 0 0001111111111 1136778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHH---------------------------
Q 000101 1380 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ--------------------------- 1432 (2239)
Q Consensus 1380 eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQ--------------------------- 1432 (2239)
++|..+-..|-.++.. +++.|-+.|.|||-+++..||+-..+-+..+|.|
T Consensus 354 ~dks~~hq~w~a~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred cccccccccccccceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 9999988888764433 6888899999999999999999999999999999
Q ss_pred ----------------hhhhhcccCCcceEEEEEEeh
Q 000101 1433 ----------------AVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1433 ----------------AiGRAhRIGQkKeV~VyrLva 1453 (2239)
--||++|-|++-++.+||-.+
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 457888888888877766433
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.6e-09 Score=133.76 Aligned_cols=413 Identities=16% Similarity=0.142 Sum_probs=225.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs-Q---W~~Ef~Kwa 1073 (2239)
+...++-|+.|..-|+. |.|.=..||.|||+++...+..... ....+.||+|+..|. + |...|-+|+
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~l~AL---~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAAGYAL---QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHHHHHH---cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 33455559988866653 4577788999999998655543332 234688889988553 3 666666665
Q ss_pred CCCceEEEecch--hhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gsk--d~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++.+.+..+.. ..|+.. ...+|+-+|-.-|--| ........+.++||||++.+.=
T Consensus 147 -GLsvg~i~~~~~~~err~a------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI------- 212 (764)
T PRK12326 147 -GLTVGWITEESTPEERRAA------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV------- 212 (764)
T ss_pred -CCEEEEECCCCCHHHHHHH------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee-------
Confidence 45555555442 233322 2567777775544322 1222334789999999998741
Q ss_pred HhhccccceEEEecCCCC-CCCHHHHHHHHhhhcCcc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1143 DLDRYRCQRRLLLTGTPL-QNDLKELWSLLNLLLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPI-QNnL~ELwsLLnFLlP~i-F~----------s~---k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
. .+..-|++||.+- .+.+..++.+..-|.++. |. +. ....+.|... ..+
T Consensus 213 --D--eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-----------~ly- 276 (764)
T PRK12326 213 --D--EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-----------DLY- 276 (764)
T ss_pred --c--cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-----------ccc-
Confidence 1 1344577777542 233333444444443321 10 00 0011111000 000
Q ss_pred HHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHH---
Q 000101 1208 ETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK--- 1276 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek--- 1276 (2239)
..+.....++.+...|+.. ++.+-+.-+.. +....+|. +.| .+..-+.+.+.....+.+......
T Consensus 277 ~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~As 352 (764)
T PRK12326 277 SEEHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDT 352 (764)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeeh
Confidence 0000011223333333332 33332222222 11111111 122 233444455544433332221100
Q ss_pred ---hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEE
Q 000101 1277 ---RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1348 (2239)
Q Consensus 1277 ---~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~-----s~d~Li~~SGKLelLdrIL~kLkatGhKVLI 1348 (2239)
....+......+...........|+++-+.+.+..|..... ..........|+..+..-+.++.+.|..|||
T Consensus 353 IT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLV 432 (764)
T PRK12326 353 ITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLV 432 (764)
T ss_pred hhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 00000000000000111122345667666655544432211 1111222345888888888888899999999
Q ss_pred EEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC-------------
Q 000101 1349 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA------------- 1415 (2239)
Q Consensus 1349 FSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA------------- 1415 (2239)
.|..+...+.|...|...|+++..|+..-. ++-.++|.+- +....|.|+|..+|+|.|+.-.
T Consensus 433 gt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A----G~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~ 507 (764)
T PRK12326 433 GTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA----GKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAEL 507 (764)
T ss_pred EeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc----CCCCcEEEEecCCCCccCeecCCCcccchHHHHHc
Confidence 999999999999999999999999988744 3335555543 2333589999999999997733
Q ss_pred --ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1416 --DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1416 --DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
=+||....+-|-..+.|..||++|-|......+| ++.|+.+..
T Consensus 508 GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~ 552 (764)
T PRK12326 508 GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVA 552 (764)
T ss_pred CCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHH
Confidence 3889999999999999999999999988776554 345555543
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-09 Score=141.01 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=77.7
Q ss_pred HHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1332 LDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1332 LdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
+...|.++ ...+.++|||+....+++.+...|.. .++.+. ..+.. ..|.+++++|+.++.. +|++|...
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 33334343 34567899999999999999999875 344433 33332 5789999999874333 78899999
Q ss_pred ccccCCCcC--ceEEEcCCCCC-cc-----------------------------hHHHhhhhhcccCCcceEEE
Q 000101 1407 GRGLNLQSA--DTVIIYDPDPN-PK-----------------------------NEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1407 GeGLNLqaA--DtVIifDppWN-P~-----------------------------~dlQAiGRAhRIGQkKeV~V 1448 (2239)
.+|||++.. ..|||.-.|+- |. ...|++||+.|-...+-|.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 999999974 47777776652 22 24588888888776665533
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-11 Score=164.01 Aligned_cols=98 Identities=14% Similarity=0.258 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000101 1942 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2021 (2239)
Q Consensus 1942 ck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~ 2021 (2239)
|..|+..|-.+.+ ++.|+++.+.++.||||.| |++||||.||..|+..+.|.+..+|+.||+|||.||.+||+
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~I-Ik~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~ 1378 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDI-IKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNE 1378 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHH-hcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 8889888877654 7899999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2022 FSHEVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2022 ~~sev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
. |++++....|+++|..++...||.
T Consensus 1379 ~-s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1379 D-SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred c-hhhhhhcchHHHHHHHHHHhhcCC
Confidence 9 999999999999999999999995
|
|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-11 Score=148.50 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
.+-.+.+.+++|..|.+.+|.+|+++-+.|.++|+|+..|+||.+ |..||.|.-|..||+..+|.+...|..|+.|||.
T Consensus 50 ~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~-i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 50 DPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYV-IQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred ChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCccee-ecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 344556789999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHH------HHhCCCCchHHhhh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLL------KIAFPDTDFREARS 2055 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~------k~~fP~~df~~a~~ 2055 (2239)
||+.||.++|++|++|+.|.++|.... ....++.++..|+.
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~~~ 175 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKAGG 175 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhccccchhhccccccccccCC
Confidence 999999999999999999999998855 33445555555544
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=133.65 Aligned_cols=128 Identities=23% Similarity=0.357 Sum_probs=97.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
|..++..|.--+..++. +...-+...||+|||--.+...+++.. ++ ++++||+|+. |+.|-.+.+.+++.
T Consensus 80 G~~~ws~QR~WakR~~r----g~SFaiiAPTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVR----GKSFAIIAPTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHHHHHHc----CCceEEEcCCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 45788899875555554 444444458999999655444444432 22 6899999987 67788888988873
Q ss_pred ---CCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc
Q 000101 1075 ---SVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1075 ---slkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI 1133 (2239)
.+.++ ||+. ..+++.....+..++|+|+|||-.++.+....|.+.+|++|++|.++.+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 23333 8886 5566777888999999999999999999999999999999999999986
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-09 Score=143.64 Aligned_cols=161 Identities=22% Similarity=0.200 Sum_probs=108.2
Q ss_pred CChHHHHHHHHHHHH-----hh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLS-----LY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSE 1068 (2239)
Q Consensus 1000 tLRPYQleGLqwLls-----L~-----~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~E 1068 (2239)
..|+||.....+.+. .. ..+.+|++.+-+|+|||++++-+...+.+. .....++|||- ..|-.|-..+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHH
Confidence 566666555544443 11 234579999999999999997777666654 45556666774 5588999999
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccCCceEEEecccccccChhhHHHHHh
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
|..+........ .......+...+....-.|+|||-+.|..... .....+.-+||+|||||-- .....+.+
T Consensus 323 f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~ 397 (962)
T COG0610 323 FQSFGKVAFNDP---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLL 397 (962)
T ss_pred HHHHHHhhhhcc---cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHH
Confidence 999876544333 23334445455555566899999998876542 2345678899999999963 33444444
Q ss_pred h-ccccceEEEecCCCCCCCHHH
Q 000101 1145 D-RYRCQRRLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1145 k-~Lka~rRLLLTGTPIQNnL~E 1166 (2239)
+ .|....-+++||||+...-..
T Consensus 398 ~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 398 KKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHHhccceEEEeeCCcccccccc
Confidence 4 455577899999998755333
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-08 Score=129.32 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=113.9
Q ss_pred HHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEe
Q 000101 1298 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1372 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~-----~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~R 1372 (2239)
..|.++-+.+.+..|.... ...........|+..+.+-+..+.+.|..|||-|.++...+.|..+|...|+++-.
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~V 478 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKV 478 (913)
T ss_pred HHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 3566666665554443221 11112233456888888888889999999999999999999999999999999988
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC-------------------------------------cC
Q 000101 1373 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ-------------------------------------SA 1415 (2239)
Q Consensus 1373 LDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq-------------------------------------aA 1415 (2239)
|+-... +.-..+|.+ ++ ..-.|.|+|..+|+|.|+. .-
T Consensus 479 LNAk~~-~~EA~IIa~--AG--~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GG 553 (913)
T PRK13103 479 LNAKYH-EKEAEIIAQ--AG--RPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGG 553 (913)
T ss_pred hccccc-hhHHHHHHc--CC--CCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCC
Confidence 877643 333445543 22 2335899999999999985 23
Q ss_pred ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhh
Q 000101 1416 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460 (2239)
Q Consensus 1416 DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s 1460 (2239)
=+||.-..+-|-..+.|..||++|-|.......|. +.|+.+..
T Consensus 554 LhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l--SlED~Lmr 596 (913)
T PRK13103 554 LHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL--SLEDSLMR 596 (913)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEE--EcCcHHHH
Confidence 38899999999999999999999999887765543 34555443
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=123.47 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC--CeEEEechH-HHHHHHHHHH---HHCCC
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG--PHLIIVPNA-VLVNWKSELH---KWLPS 1075 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~G--P~LIVVP~S-LLsQW~~Ef~---KwaPs 1075 (2239)
-+-|.+++...+- +...|.-.-.|+|||..+. ++.|....+..| .+||+|-+. |.-|..+|+. ++.|+
T Consensus 66 sevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 66 SEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred hHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 3467888876665 5555666789999996543 334433333333 568888766 7778887755 55799
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEeccccccc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMK 1134 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIK 1134 (2239)
+++.++.|+-...+.. . ....-++|+|.|++.+.... ..|.-.+....|||||+.|.
T Consensus 140 vkvaVFfGG~~Ikkde-e-~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDE-E-LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred ceEEEEEcceeccccH-H-HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 9999998876544321 1 22237899999999987542 34555577899999999875
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.6e-10 Score=132.49 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=89.3
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcC---CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rG---iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
.-.|+||||....-+|-|+.+|+.+| |.++-+||..++.+|..-|+.|...+-. |||+|+++++|||++..-.+
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 35689999999999999999999875 6788999999999999999999976655 99999999999999999999
Q ss_pred EEcCCCCCcchHHHhhhhhcccC
Q 000101 1419 IIYDPDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1419 IifDppWNP~~dlQAiGRAhRIG 1441 (2239)
|+...|-.-.+|.+||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999998853
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-08 Score=126.51 Aligned_cols=154 Identities=20% Similarity=0.211 Sum_probs=104.4
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ-W~~Ef~KwaPsl 1076 (2239)
..+|-.+|++++..|.. +-...+|.-|-.|||+.|=..|+--. . ...+++.-.|...|+| =.++|+.-+..+
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq-~--h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ-K--HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH-h--hccceEecchhhhhccchHHHHHHhcccc
Confidence 45899999999987775 88889999999999998855543222 1 2236677779776665 456777777665
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccccccChhh-HHHH-Hhhccccc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRYRCQ 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHrIKN~~S-Klsk-aLk~Lka~ 1150 (2239)
. +..|... ......++|+|-+.|+.-. +.+. +...||+||.|.+.+-.. -.|. .+..++.+
T Consensus 368 g--LlTGDvq---------inPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 368 G--LLTGDVQ---------INPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred c--eeeccee---------eCCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeeecccc
Confidence 5 5556532 2346689999999987642 2232 466799999999965222 2333 33344443
Q ss_pred -eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC
Q 000101 1151 -RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191 (2239)
Q Consensus 1151 -rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k 1191 (2239)
..++||||- .+..+|..|++.
T Consensus 435 V~~IlLSATV--------------------PN~~EFA~WIGR 456 (1248)
T KOG0947|consen 435 VNFILLSATV--------------------PNTLEFADWIGR 456 (1248)
T ss_pred ceEEEEeccC--------------------CChHHHHHHhhh
Confidence 368899992 234678888864
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-07 Score=122.83 Aligned_cols=404 Identities=16% Similarity=0.240 Sum_probs=220.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH---HHHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL---VNWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LL---sQW~~Ef~KwaPs 1075 (2239)
..++-|+.|.--|. .|.|.=..||=|||+++.. .+||....+ ..+-||+.+. |. ..|...|.+|+.
T Consensus 78 r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fLG- 147 (925)
T PRK12903 78 RPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFLG- 147 (925)
T ss_pred CcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHhC-
Confidence 44455888874332 3557778999999998644 344433222 3445555555 44 349999999985
Q ss_pred CceEEE-ec-chhhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccChhhHHHHHh
Q 000101 1076 VSCIYY-VG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1076 lkvvvy-~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
+.|-+. .+ ....|+.. ...+|+-+|..-|--| ...+....+.|+||||++.+.=..
T Consensus 148 LsvG~i~~~~~~~~rr~a------Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDE------- 214 (925)
T PRK12903 148 LSVGINKANMDPNLKREA------YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDE------- 214 (925)
T ss_pred CceeeeCCCCChHHHHHh------ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecc-------
Confidence 333332 23 33444433 2567887776554332 122334578899999999874111
Q ss_pred hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCC-----------------hHHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------RKAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s-----------------~k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
+..-|++||.+ ... .++|..++-+-+.+-.. .....+.|... + +
T Consensus 215 ----ArTPLIISg~~-~~~-~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~--n-----------L 275 (925)
T PRK12903 215 ----AKTPLIISGGQ-SND-SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLK--N-----------L 275 (925)
T ss_pred ----cCCcccccCCC-ccc-hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCC--c-----------c
Confidence 12235566643 222 24555444332211100 00111111100 0 0
Q ss_pred HHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHhhh
Q 000101 1208 ETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKRRV 1279 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~~l 1279 (2239)
........++.+...|+.. ++.|-+.-+.. +....+|. ..| .+..-+.+.+.....+.+..... .+
T Consensus 276 y~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~---dg~V~IVD-efTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~--Tl 349 (925)
T PRK12903 276 YDIENSELVHRIQNALRAHKVMKEDVEYIVR---DGKIELVD-QFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETK--TL 349 (925)
T ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHHHcCCCCCCCce--ee
Confidence 0111122334444455443 33333333322 11122221 122 23334444444333222222110 00
Q ss_pred hcChhhH--HHHHHH-------HHHHHHHHHHHcCCCCCCCCCccccc----hh-hHhhcccHHHHHHHHHHHHHhcCCe
Q 000101 1280 QKNPIYQ--AKVYKT-------LNNRCMELRKTCNHPLLNYPYFSDLS----KD-FLVKSCGKLWILDRILIKLQRTGHR 1345 (2239)
Q Consensus 1280 ~k~~~~~--~k~~ks-------L~niImqLRKiCnHP~L~~p~~~~~s----~d-~Li~~SGKLelLdrIL~kLkatGhK 1345 (2239)
..- .++ -+.|.. ....-..+.++-+...+..|...... .+ .......|+..+..-+.++..+|..
T Consensus 350 AsI-T~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqP 428 (925)
T PRK12903 350 ATI-TYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQP 428 (925)
T ss_pred eee-hHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCC
Confidence 000 000 000110 01112356666666655544432211 11 1223447888888888888889999
Q ss_pred EEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc--------e
Q 000101 1346 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD--------T 1417 (2239)
Q Consensus 1346 VLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD--------t 1417 (2239)
|||.|..+...+.|..+|...|+++..|+.... +.-..+|. ++ +....|.|+|..+|+|.|+.-.. +
T Consensus 429 VLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~A--G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLh 503 (925)
T PRK12903 429 ILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KA--GQKGAITIATNMAGRGTDIKLSKEVLELGGLY 503 (925)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hC--CCCCeEEEecccccCCcCccCchhHHHcCCcE
Confidence 999999999999999999999999999988643 22234443 33 33345899999999999988544 8
Q ss_pred EEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1418 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1418 VIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
||....+-|-..+.|..||++|-|.....+.|. ++++.+.
T Consensus 504 VIgTerheSrRIDnQLrGRaGRQGDpGss~f~l--SLeD~L~ 543 (925)
T PRK12903 504 VLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI--SLDDQLF 543 (925)
T ss_pred EEecccCchHHHHHHHhcccccCCCCCcceEEE--ecchHHH
Confidence 999999999999999999999999887765542 3444444
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.5e-09 Score=135.91 Aligned_cols=157 Identities=22% Similarity=0.175 Sum_probs=97.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--------CCCeEEEech-HHHHHHHHHHHHHCCCCceEEEecchhhHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN--------YGPHLIIVPN-AVLVNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~--------~GP~LIVVP~-SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk 1089 (2239)
..|-+||..+|.|||..|+.-|+.-+..+.+ ...+.-|+|. +|+..|+..|.+|+..+.+.+..-+.+...
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 4566999999999998887766654432221 1256778895 588889999999998777666554444321
Q ss_pred HHHHHHhhcCccEEEEehhHH-H--Hhhhhcc-cCCceEEEeccccccc-ChhhHH----HHHhhcc----ccceEEEec
Q 000101 1090 RLFSQVAALKFNVLVTTYEFI-M--YDRSKLS-KVDWKYIIIDEAQRMK-DRESVL----ARDLDRY----RCQRRLLLT 1156 (2239)
Q Consensus 1090 ~l~~~i~~~kfdVVITTYE~L-~--kD~s~L~-kikWd~VIIDEAHrIK-N~~SKl----skaLk~L----ka~rRLLLT 1156 (2239)
-. ......+|+|||++.. . +.-.... .--++++||||.|.+- +++..+ .++..+. ...+.++||
T Consensus 405 ~~---~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLS 481 (1674)
T KOG0951|consen 405 GK---EQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLS 481 (1674)
T ss_pred hh---hhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeec
Confidence 11 2234678999999865 1 1100011 1135789999999993 333333 3333333 234578999
Q ss_pred CCCCCCCHHHHHHHHhhhcCcccC
Q 000101 1157 GTPLQNDLKELWSLLNLLLPEVFD 1180 (2239)
Q Consensus 1157 GTPIQNnL~ELwsLLnFLlP~iF~ 1180 (2239)
||- -|..|.-+.|..-.+++|.
T Consensus 482 ATL--PNy~DV~~Fl~v~~~glf~ 503 (1674)
T KOG0951|consen 482 ATL--PNYEDVASFLRVDPEGLFY 503 (1674)
T ss_pred ccC--CchhhhHHHhccCcccccc
Confidence 993 3556666655443456654
|
|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-11 Score=125.15 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=76.7
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
+.++. +.++|++.+ +++||+++++| .+|++..|||||++|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 3 ~~~~~-l~~~i~~~~-----d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~ 75 (103)
T cd05517 3 QILEQ-LLEAVMTAT-----DPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMV 75 (103)
T ss_pred HHHHH-HHHHHHHhh-----CcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHH
Confidence 45666 888899998 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
+||+++ .++..|+
T Consensus 76 ~Na~~yN~~~s~i~-----~~A~~l~ 96 (103)
T cd05517 76 KNAKTFNEPGSQVY-----KDANAIK 96 (103)
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887766
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-11 Score=121.58 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=77.3
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.++. +.++|.+.. +.+|++++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 6 ~l~~-i~~~i~~~k-----d~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l~f~ 78 (106)
T cd05525 6 VLKE-ICDAIITYK-----DSNGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLKVFR 78 (106)
T ss_pred HHHH-HHHHHHHhh-----ccCCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3455 777888888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred -------CCCccccCCccccccccc-cccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ-PKIK 1803 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~-~~~~ 1803 (2239)
+||+|+ .++..|+ .+..
T Consensus 79 Na~~yn~~~S~i~-----~~A~~L~~~f~~ 103 (106)
T cd05525 79 NAEKYYGRKSPIG-----RDVCRLRKAYYQ 103 (106)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHHHHH
Confidence 999999 8888877 4433
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-07 Score=122.54 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.|-+-|..++.-+..........+|.--||+|||-..+-+|...+. . .+-+||+||.- +..|-...|...++ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~--GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q--GKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c--CCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 6778899999998876522344599999999999999999988775 2 35799999965 88998889988887 666
Q ss_pred EEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc--cChhhHH--HHHh---hcccc
Q 000101 1079 IYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL--ARDL---DRYRC 1149 (2239)
Q Consensus 1079 vvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI--KN~~SKl--skaL---k~Lka 1149 (2239)
.+++.. ..+|.+.+.....+...|||.|...+.- .-.+..+|||||=|.- |..+... .+.+ .....
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-----chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 666654 4455556666778899999999877642 2235679999999974 4322211 1122 22222
Q ss_pred c-eEEEecCCC
Q 000101 1150 Q-RRLLLTGTP 1159 (2239)
Q Consensus 1150 ~-rRLLLTGTP 1159 (2239)
. -.++=||||
T Consensus 349 ~~pvvLgSATP 359 (730)
T COG1198 349 NAPVVLGSATP 359 (730)
T ss_pred CCCEEEecCCC
Confidence 2 355569999
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-10 Score=140.04 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=142.8
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1725 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1725 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
.-+|+.++.+| .+||++.||+||.+|+.||||.+ |..+|..|.|.++.++-.||.+ |+||++ .
T Consensus 159 ~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~-i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~-----~ 232 (371)
T COG5076 159 LRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLT-IQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVY-----V 232 (371)
T ss_pred cccccccccccccCCccccCCChheeecchhhHHH-HHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchh-----h
Confidence 56999999999 99999999999999999999999 9999999999999999999997 333333 1
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000101 1794 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1873 (2239)
Q Consensus 1794 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1873 (2239)
++..++
T Consensus 233 ~a~~l~-------------------------------------------------------------------------- 238 (371)
T COG5076 233 DAKELE-------------------------------------------------------------------------- 238 (371)
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000101 1874 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1953 (2239)
Q Consensus 1874 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~ 1953 (2239)
+.+-.+ +..-.....++.. .++... ..+ ....+ .-
T Consensus 239 ~~~~~~----------------------i~~~~~~~~~~~~---------~~~~~~------~~~------~~~~~--i~ 273 (371)
T COG5076 239 KYFLKL----------------------IEEIPEEMLELSI---------KPGREE------REE------RESVL--IT 273 (371)
T ss_pred HHHHHH----------------------HHhccccchhhcc---------Cccccc------ccc------chhhc--cc
Confidence 000000 0000001011111 111101 111 11011 11
Q ss_pred ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHH
Q 000101 1954 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKV 2033 (2239)
Q Consensus 1954 d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L 2033 (2239)
+...+.-.+.|+..|++.+.|+||+. |..++|+.+...++....|..+.+|..|..+|++||..||+.--..+..+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKD-IRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVL 352 (371)
T ss_pred ccccccccccccccCCcccccchhhh-hhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccch
Confidence 33666778889999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000101 2034 HDLFFDLLK 2042 (2239)
Q Consensus 2034 ~~~f~~~~k 2042 (2239)
.++|...+.
T Consensus 353 ~~~~~~~~~ 361 (371)
T COG5076 353 EDFVIKKTR 361 (371)
T ss_pred hhhHhhhhh
Confidence 999887654
|
|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-09 Score=138.36 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=85.8
Q ss_pred CCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000101 1956 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHD 2035 (2239)
Q Consensus 1956 ~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~ 2035 (2239)
..|.=.+.|+..-.+.+.||||.+ |.+||||++|+.+|+.+.|..+.+|++|+..+|.||+-||+..++-|+.|..|..
T Consensus 619 ~~h~~awPf~~Pv~~~e~pdyy~~-I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~ 697 (720)
T KOG1472|consen 619 QNHGDAWPFLKPVNKKEVPDYYDV-IKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEK 697 (720)
T ss_pred hcCCccCCccCccccccCCcHHHH-hcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhh
Confidence 345567899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 000101 2036 LFFDLLKIAFP 2046 (2239)
Q Consensus 2036 ~f~~~~k~~fP 2046 (2239)
+|..+|+..++
T Consensus 698 ~~~~k~~~~i~ 708 (720)
T KOG1472|consen 698 FFLFKLNELIL 708 (720)
T ss_pred hhcchhhhhhh
Confidence 99999998876
|
|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-10 Score=119.42 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=75.7
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.+.. +.++++... +++||+++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.|+..|+.+
T Consensus 5 ~~~~-il~~v~~~~-----d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~ 77 (107)
T cd05516 5 KMNK-IVDVVIKYK-----DSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVMLLCQ 77 (107)
T ss_pred HHHH-HHHHHHhhh-----CcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHH
Confidence 3444 677788887 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQPK 1801 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~~~ 1801 (2239)
+||+|+ .++..|+-.
T Consensus 78 Na~~yN~~~s~i~-----~~a~~l~~~ 99 (107)
T cd05516 78 NAQTFNLEGSLIY-----EDSIVLQSV 99 (107)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888887733
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.3e-08 Score=117.17 Aligned_cols=208 Identities=19% Similarity=0.239 Sum_probs=118.0
Q ss_pred eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChh----hHHHHHHHHHHHHHHHHHHcCCCCCCCCCcc---
Q 000101 1243 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI----YQAKVYKTLNNRCMELRKTCNHPLLNYPYFS--- 1315 (2239)
Q Consensus 1243 ~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~----~~~k~~ksL~niImqLRKiCnHP~L~~p~~~--- 1315 (2239)
.++.+.++|+..|+.+|+.+.......+...-+ ....... ........+...+..|+.+|+||+|....+-
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCE--TNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHH--STTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHc--ccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc
Confidence 357788999999999999876543211111000 0000000 0012336677788999999999999654431
Q ss_pred ---ccchhhHhhcccHHHHHHHHHHHH-----HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH-
Q 000101 1316 ---DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI- 1386 (2239)
Q Consensus 1316 ---~~s~d~Li~~SGKLelLdrIL~kL-----katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL- 1386 (2239)
......+...||||.+|.++|..+ ...+.++||.|+...++|+|+.+|..+++.|.|++|..-.++....-
T Consensus 82 ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 82 LLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--
T ss_pred cccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCc
Confidence 123456788999999999999999 66788999999999999999999999999999999976554433322
Q ss_pred -----------HHHh-cCCCCccEEEEeccccccc----cCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 -----------VDFN-SHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 -----------~~FN-s~ds~~~VfLLSTrAGGeG----LNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.... .+...+.|+|++++-.... ++-..+|.||-||+.+|+....-..=|..--.. +.+-|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Piir 240 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIR 240 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEE
Confidence 1111 1234567778887755442 334468999999999999875544444433222 7788888
Q ss_pred Eeh
Q 000101 1451 MEA 1453 (2239)
Q Consensus 1451 Lva 1453 (2239)
++.
T Consensus 241 Lv~ 243 (297)
T PF11496_consen 241 LVP 243 (297)
T ss_dssp EEE
T ss_pred Eee
Confidence 865
|
The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B. |
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-10 Score=116.69 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+++.+++ +.+||+++.+| .+|++..|||||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~i~~~~-----~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05520 8 LYDTIRNAR-----NNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNLMFENAKRY 81 (103)
T ss_pred HHHHHHhhc-----CCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 677788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCcccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQP 1800 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~~ 1800 (2239)
+||+++ .++..|+-
T Consensus 82 N~~~s~i~-----~~A~~L~~ 97 (103)
T cd05520 82 NVPNSRIY-----KDAEKLQK 97 (103)
T ss_pred CCCCCHHH-----HHHHHHHH
Confidence 899999 88877773
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-10 Score=116.11 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+...+ +++||+++.+| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 8 ~~~~i~~~~-----d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 8 LYNAVKNYT-----DGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHhh-----CcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 667788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc-cccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ-PKIKRK 1805 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~-~~~~rk 1805 (2239)
+||+++ .++..|+ -+..++
T Consensus 82 N~~~s~i~-----~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIY-----KDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHH
Confidence 999999 8998888 444443
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-10 Score=114.85 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=74.8
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.|++.. +.+||.++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~v~~~~-----d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 8 LFLYVLEYR-----EGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHhh-----ccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 566677777 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQPKIKRK 1805 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~~~~~rk 1805 (2239)
+||+|+ .++..|+-.++.|
T Consensus 82 N~~~s~i~-----~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVY-----EDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHH-----HHHHHHHHHHHhc
Confidence 999999 8887777444433
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=124.77 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=110.1
Q ss_pred cCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+.+|-++|.+++.-+.. +.+.++|..||.|||+.+-..+..-+. .+ ..++-..|.. |..|=..+|..-+..
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~-~~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALR-DG--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHH-cC--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 357999999999976665 889999999999999999887766553 22 2478888966 555566666665543
Q ss_pred C--ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhcccc
Q 000101 1076 V--SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC 1149 (2239)
Q Consensus 1076 l--kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka 1149 (2239)
+ .+-++.|... ...+..|+|.|-+.|++-. ....-.....||+||.|.|.. .+.-.-..+..+++
T Consensus 189 v~~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~ 259 (1041)
T COG4581 189 VADMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD 259 (1041)
T ss_pred hhhhccceeccee---------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC
Confidence 2 2344555432 2346678888878887542 222223567799999999965 33344445556666
Q ss_pred c-eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcC
Q 000101 1150 Q-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191 (2239)
Q Consensus 1150 ~-rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~k 1191 (2239)
. +.++|||| .++..+|..|+..
T Consensus 260 ~v~~v~LSAT--------------------v~N~~EF~~Wi~~ 282 (1041)
T COG4581 260 HVRFVFLSAT--------------------VPNAEEFAEWIQR 282 (1041)
T ss_pred CCcEEEEeCC--------------------CCCHHHHHHHHHh
Confidence 5 67889999 3556889999874
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-10 Score=115.37 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=76.5
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
++++|+++. +++||+++++| .||+ .+|+||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 11 l~~~V~~~~-----D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 11 LFVSVMNHQ-----DEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHhcc-----CCCCCCchHHHHHCCC--cccCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 788899999 78999999999 9999 77888999999999999 9999999999999999999998
Q ss_pred --CCCccccCCcccccccccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQPKIKRKR 1806 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~~~~~rkr 1806 (2239)
+||.|+ +|+.+||-.+.++|
T Consensus 83 N~~~S~iy-----~dA~eLq~~f~~~r 104 (110)
T cd05526 83 SRTDSEIY-----EDAVELQQFFIKIR 104 (110)
T ss_pred CcccCHHH-----HHHHHHHHHHHHHH
Confidence 999999 99999996655554
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=123.09 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=60.4
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
-..+||.|.+-...+...+..+.++||-..||+|||+.+|+..+......+...++++.+.+. -+.|..+|+++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 335799999999999999999999999999999999999887766554444445666666765 68889999988
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-06 Score=108.94 Aligned_cols=366 Identities=16% Similarity=0.197 Sum_probs=184.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs----QW~~Ef~Kwa 1073 (2239)
|...++-|+-|.--| ..|.|.=..||-|||+++..+ +++... ....+-||+++.-|. .|...|-+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~l~-ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVATLP-AYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHHHH-HHHHHh--cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 334556688886433 235577789999999976443 444332 234677888877443 4999999998
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHH-----Hhh----hhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIM-----YDR----SKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~-----kD~----s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
+ +.+-+..+. ...|+.. ...+|+-+|-.-+- ... .......+.++||||++.+.=
T Consensus 145 G-Lsvg~i~~~~~~~err~a------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI------- 210 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKKN------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI------- 210 (870)
T ss_pred C-CceeeeCCCCChHHHHHh------cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee-------
Confidence 5 444444332 2333322 35577777754332 221 122334689999999998741
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhh----cCcc-cC----------Ch--HHHHhhhcCCcccCCCCCCCChh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL----LPEV-FD----------NR--KAFHDWFSQPFQKEGPTHNADDD 1205 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFL----lP~i-F~----------s~--k~F~e~F~kPf~~~g~~~~~e~d 1205 (2239)
.. +..-|++||-+-. ..++|...+-+ ..+. |. +. -.+.+.|.. +.+
T Consensus 211 --De--ArTPLiISg~~~~--~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~-i~~---------- 273 (870)
T CHL00122 211 --DE--ARTPLIISGQSKT--NIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILK-IED---------- 273 (870)
T ss_pred --cc--CCCceeccCCCcc--chHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcC-Ccc----------
Confidence 11 1233677775432 23455444332 2221 00 00 011111100 000
Q ss_pred hHHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh
Q 000101 1206 WLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1277 (2239)
Q Consensus 1206 ~l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~ 1277 (2239)
+..... ..++.+...|+.. ++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 274 -ly~~~~-~~~~~i~~AL~A~~lf~~d~dYiV~---dgeV~iVD-e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tl 347 (870)
T CHL00122 274 -LYSAND-PWIPYILNALKAKELFFKNVHYIVR---NNEIIIVD-EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETL 347 (870)
T ss_pred -cccccc-HHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCcCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 000000 1122233333332 22322222221 11112221 122 2334444445443333222211000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhhHh-hcccHHHHHHHHHHHHHhcCCeE
Q 000101 1278 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFLV-KSCGKLWILDRILIKLQRTGHRV 1346 (2239)
Q Consensus 1278 ------~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~Li-~~SGKLelLdrIL~kLkatGhKV 1346 (2239)
...+......+........-..|+++-+-..+..|...... .+.+. ....|+..+..-+..+...|..|
T Consensus 348 AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPV 427 (870)
T CHL00122 348 ASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPI 427 (870)
T ss_pred eeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 00000000000000111123456666666555444332111 11222 23357777777777788899999
Q ss_pred EEEEccHHHHHHHHHHHHHcCCeEEeecCCC-CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC
Q 000101 1347 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1413 (2239)
Q Consensus 1347 LIFSQ~t~~LDILed~L~~rGiky~RLDGst-s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq 1413 (2239)
||-|..+...+.|..+|...|+++..|+... ..+.-..+|.+= +..-.|-|+|..+|+|.|+.
T Consensus 428 LIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A----G~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 428 LIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA----GRKGSITIATNMAGRGTDII 491 (870)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc----CCCCcEEEeccccCCCcCee
Confidence 9999999999999999999999999999874 334445566552 23335899999999997753
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=114.56 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
|.+-+.++...+.++...|+-..||+|||+.++..+..... .....++||++|+. |..|+..++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 77888888888888877788899999999999887765543 22346899999977 7788888876554
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-06 Score=112.70 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=77.7
Q ss_pred HHHHHHHHHH-hcCCeEEEEEccHHHHHHHHHHHHHcCC--eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000101 1331 ILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1331 lLdrIL~kLk-atGhKVLIFSQ~t~~LDILed~L~~rGi--ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG 1407 (2239)
.+.+.|..+. ..+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..+. .+|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~---~iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK---AILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC---eEEEecCccc
Confidence 4444444443 4667899998888999988888865422 12223323333468899999986433 3788899999
Q ss_pred cccCCCc--CceEEEcCCCC-Ccch-----------------------------HHHhhhhhcccCCcceE
Q 000101 1408 RGLNLQS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1408 eGLNLqa--ADtVIifDppW-NP~~-----------------------------dlQAiGRAhRIGQkKeV 1446 (2239)
+|||++. +..|||.-.|+ +|.. +.|++||..|-.+.+-|
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 9999996 58899998887 4542 24777888887666554
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=115.50 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccc
Q 000101 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1410 (2239)
Q Consensus 1331 lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGL 1410 (2239)
.+...|..+...+.++|||+....++..+.+.|....+.. ...|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4445555555678899999999999999888887655444 4445332 356799999874333 789999999999
Q ss_pred CCC--cCceEEEcCCCC
Q 000101 1411 NLQ--SADTVIIYDPDP 1425 (2239)
Q Consensus 1411 NLq--aADtVIifDppW 1425 (2239)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 466678877663
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-09 Score=110.43 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=72.4
Q ss_pred cccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000101 1707 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1781 (2239)
Q Consensus 1707 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1781 (2239)
+.. +.+++++.. +.+||+++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 5 ~~~-i~~~v~~~~-----~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05519 5 MLE-IYDAVLNCE-----DETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHLMFAN 77 (103)
T ss_pred HHH-HHHHHHHhc-----CcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 445 677788887 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred ------CCCccccCCccccccccc
Q 000101 1782 ------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 ------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 78 a~~yn~~~s~i~-----~~A~~l~ 96 (103)
T cd05519 78 ARTYNQEGSIVY-----EDAVEME 96 (103)
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 888888 6665554
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-05 Score=105.93 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..+..-+.++...|..|||-|..+..-++|...|..+|+++-.|+-... +.-.++|.+= +..-.|-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A----G~~GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA----GQPGTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc----CCCCcEEEecc
Confidence 346888888888899999999999999999999999999999999988877643 2223455442 22234899999
Q ss_pred ccccccCCC--------cCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhh
Q 000101 1405 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1405 AGGeGLNLq--------aADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~ 1459 (2239)
-+|+|-|+. .-=+||.-..+-|...+.|..||++|-|.......| +++|+.+.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLm 745 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLM 745 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHH
Confidence 999999987 345889999999999999999999999988765544 23454444
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-06 Score=109.05 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=79.6
Q ss_pred HhcCCeEEEEEccHHHHHHHHHHHHHcCC-eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc--Cc
Q 000101 1340 QRTGHRVLLFSTMTKLLDILEEYLQWRQL-VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--AD 1416 (2239)
Q Consensus 1340 katGhKVLIFSQ~t~~LDILed~L~~rGi-ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa--AD 1416 (2239)
...+.++|||+..-.+|..+.++|..... ..+...|... +..+++.|...... .||+.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 44566999999999999999999987765 3455666654 44899999874432 68999999999999996 68
Q ss_pred eEEEcCCCCC-cch-----------------------------HHHhhhhhcccCCcceEEEE
Q 000101 1417 TVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1417 tVIifDppWN-P~~-----------------------------dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.|||.-.|+= |.. ..|++||+.|--..+-|.|+
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 8999988874 322 45889999985555555554
|
|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-09 Score=112.55 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=71.6
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+.... +++||+++++| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 10 il~~l~~~~-----~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 10 LYDTIRNYK-----SEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHhhc-----ccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677777 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
+||.++ .++..|+
T Consensus 84 N~~~s~~~-----~~A~~L~ 98 (113)
T cd05524 84 YKPDSPEH-----KDACKLW 98 (113)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 899998 8887777
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-05 Score=101.03 Aligned_cols=372 Identities=16% Similarity=0.206 Sum_probs=187.6
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL----sQW~~Ef~Kwa 1073 (2239)
|...++-|+.|.--| +.|.|.-.-||-|||+++ ++.+++....+ ..+-||+++.-| ..|...|.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 334445588876544 346688899999999976 44455543222 357777777744 34999999998
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHH-----Hhh----hhcccCCceEEEecccccccChhhHHHH
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIM-----YDR----SKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~-----kD~----s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++.|-+..+. ...|+ .....+|+.+|-..|- ... .......+.++||||++.+.
T Consensus 154 -GLtvg~i~~~~~~~err------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL-------- 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERK------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL-------- 218 (939)
T ss_pred -CCeEEEECCCCChHHHH------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee--------
Confidence 4555444332 22332 2346789888876653 221 11233578999999999874
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhh----cCCcccCCCCCC---CChhhHHHHHH---
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF----SQPFQKEGPTHN---ADDDWLETEKK--- 1212 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F----~kPf~~~g~~~~---~e~d~l~~ee~--- 1212 (2239)
+.. +..-|++||.+- ...++|...+-+... +.+|. ...+........ .+......+..
T Consensus 219 -IDE--ArTPLIISg~~~--~~~~~y~~~~~~~~~-------L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i 286 (939)
T PRK12902 219 -IDE--ARTPLIISGQVE--RPQEKYQKAAEVAAA-------LQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGV 286 (939)
T ss_pred -ecc--CCCcccccCCCc--cchHHHHHHHHHHHH-------hhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCc
Confidence 121 122367787653 223454433322110 00000 000000000000 00000000000
Q ss_pred -------HHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccC-------HHHHHHHHHHHHhcCcccCchhHHh
Q 000101 1213 -------VIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1277 (2239)
Q Consensus 1213 -------~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS-------~~Qr~LY~~I~~~~~l~l~~~~ek~ 1277 (2239)
....+.+...|+.. ++.+-+.-+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 287 ~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tl 362 (939)
T PRK12902 287 SDLFDPQDPWAHYIFNALKAKELFIKDVNYIVR---NGEVVIVD-EFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTL 362 (939)
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 01122233333332 22232222221 11111111 122 2344455555444333322211000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhh-HhhcccHHHHHHHHHHHHHhcCCeE
Q 000101 1278 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDF-LVKSCGKLWILDRILIKLQRTGHRV 1346 (2239)
Q Consensus 1278 ------~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s----~d~-Li~~SGKLelLdrIL~kLkatGhKV 1346 (2239)
...+......+........-..|+++-+.+.+..|...... .+. ......|+..+..-+.++.+.|..|
T Consensus 363 AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPV 442 (939)
T PRK12902 363 ASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPV 442 (939)
T ss_pred eeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 00000000000000111122456676666555444322111 111 2223568888888888888999999
Q ss_pred EEEEccHHHHHHHHHHHHHcCCeEEeecCC-CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCC
Q 000101 1347 LLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1413 (2239)
Q Consensus 1347 LIFSQ~t~~LDILed~L~~rGiky~RLDGs-ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLq 1413 (2239)
||-|..+...+.|...|...|+++..|+-. ...+.-..+|.+= +..-.|-|+|..+|+|-|+.
T Consensus 443 LIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A----G~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 443 LVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA----GRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc----CCCCcEEEeccCCCCCcCEe
Confidence 999999999999999999999999999886 3434445566552 22334889999999996644
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-07 Score=106.08 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=104.2
Q ss_pred ccCCCChHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe-chHHHHHHHHH
Q 000101 996 LRAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV-PNAVLVNWKSE 1068 (2239)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV-P~SLLsQW~~E 1068 (2239)
+..|.|-.-|+++|-+...... .+.+.+|.|.+|.||.-++.++|.+.+. .++ .+.|.|. ...|...-.+.
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr-~r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGR-KRAVWVSVSNDLKYDAERD 110 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCC-CceEEEECChhhhhHHHHH
Confidence 3457899999999999987665 3455699999999999999999988764 344 3456555 45577777777
Q ss_pred HHHHCCC-CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh-------hhcc-------cCCceEEEecccccc
Q 000101 1069 LHKWLPS-VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR-------SKLS-------KVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1069 f~KwaPs-lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~-------s~L~-------kikWd~VIIDEAHrI 1133 (2239)
+...... +.+.....-+.. .....+..||++||..|+... ..|. ...-.+||+||||++
T Consensus 111 l~DIG~~~i~v~~l~~~~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 111 LRDIGADNIPVHPLNKFKYG------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHhCCCcccceechhhccC------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 7765322 222111111000 012236689999999998662 1222 112358999999999
Q ss_pred cChhh------HHHHHhh----ccccceEEEecCCCCC
Q 000101 1134 KDRES------VLARDLD----RYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1134 KN~~S------KlskaLk----~Lka~rRLLLTGTPIQ 1161 (2239)
||..+ +...++. .++..+.+..|||...
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 99654 4444443 3455678889999864
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-05 Score=105.40 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH-H-CCCCc
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK-W-LPSVS 1077 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K-w-aPslk 1077 (2239)
--.+|.+-+.-+ ..+...+|...|-.|||....-.+...++ ....+-++.|+|+. ++.|-..++.- | ++.+.
T Consensus 512 Pd~WQ~elLDsv----Dr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELLDSV----DRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHhhhh----hcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 345787766433 34667788889999999888777776665 44567888899976 66665555443 3 23322
Q ss_pred eEE-EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cc--cCCceEEEecccccccChh-hHHHHHhhccccc
Q 000101 1078 CIY-YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LS--KVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQ 1150 (2239)
Q Consensus 1078 vvv-y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~--kikWd~VIIDEAHrIKN~~-SKlskaLk~Lka~ 1150 (2239)
..+ ..|.- .+. +. +.....+|+||-++.+-...-. -. --+..|||+||.|.+.|.. ..++..+-.+-.-
T Consensus 587 rg~sl~g~l-tqE--Ys-inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~C 662 (1330)
T KOG0949|consen 587 RGVSLLGDL-TQE--YS-INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPC 662 (1330)
T ss_pred cchhhHhhh-hHH--hc-CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCC
Confidence 221 12211 110 00 1223568999999887543211 01 1156899999999998744 4555555544333
Q ss_pred eEEEecCCCCCCCHHHHHHHHh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
-.|+|||| .+++..+.-.++
T Consensus 663 P~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 663 PFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CeeEEecc--cCCHHHHHHHHH
Confidence 46889999 677777777777
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.7e-09 Score=106.47 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=68.3
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
..+.|.+.. +++|++++.+| .+|++..+||||.+|++||||++ |..+|..|+|.++.++..|+.+
T Consensus 9 i~~~v~~~~-----d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 9 ILKGLRKER-----DENGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHh-----CcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344566666 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 83 n~~~s~i~-----~~A~~l~ 97 (104)
T cd05522 83 NENDSQEY-----KDAVLLE 97 (104)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 888888 6655543
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.6e-09 Score=106.93 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=69.4
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+.+.. +.+|++++++| .+|+++.|||||.+|++||||++ |..+|+. |.++.++..|+.+
T Consensus 9 l~~~i~~~~-----~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 9 LYDGIYTLK-----EENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHhhc-----CcCCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 666788887 66799999999 99999999999999999999999 9999998 9999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
+||+++ .++..|.
T Consensus 81 N~~~s~i~-----~~A~~le 95 (106)
T cd05521 81 NTKGSVIY-----KYALILE 95 (106)
T ss_pred cCCCCHHH-----HHHHHHH
Confidence 999999 7776665
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=106.84 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=76.8
Q ss_pred CCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1343 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1343 GhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
..-+|||-.-...++.+.+.|.. ..+.++-|+|.++.++..++ |+......+-|+++|.++.++|.+..+.+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689998888888877777776 45778999999999887774 554333435589999999999999999988
Q ss_pred E--------EcCCCC----------CcchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1419 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1419 I--------ifDppW----------NP~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
| .||+-- +-+...||-|||+|.+ +-.+|+|.+-
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse 386 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSE 386 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCH
Confidence 7 344332 2234557777777754 5567777663
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=113.60 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=52.4
Q ss_pred CccEEEEehhHHHHhh--hhcccCCceEEEecccccccChhhHHHHHhhcc----ccceEEEecCCCCCC--CHHHHHHH
Q 000101 1099 KFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWSL 1170 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L----ka~rRLLLTGTPIQN--nL~ELwsL 1170 (2239)
.-.|++.|...+..|. ..+.-..+..|||||||++.. ++.-.-++..| +..+..++|+.|-.. ....|-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 4579999999998884 345555789999999999964 33333334444 345689999999763 34455555
Q ss_pred HhhhcCc
Q 000101 1171 LNLLLPE 1177 (2239)
Q Consensus 1171 LnFLlP~ 1177 (2239)
+.-|.-.
T Consensus 86 mk~L~i~ 92 (814)
T TIGR00596 86 MRNLFLR 92 (814)
T ss_pred HHHhCcC
Confidence 5555333
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=109.60 Aligned_cols=241 Identities=16% Similarity=0.244 Sum_probs=128.2
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHH
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVN 1064 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQ 1064 (2239)
.|++ ..|-|-.-|+++|-|.+.... ..-|-||.|.-|.||-.++..+|...+- ++. ++.|.+.- ..|-..
T Consensus 257 lP~i-~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGR-KrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 257 LPSI-DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGR-KRALWFSVSSDLKFD 333 (1300)
T ss_pred cccC-cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-ccc-ceeEEEEeccccccc
Confidence 5663 345899999999999987654 2344589999999886665555544332 333 45666654 446555
Q ss_pred HHHHHHHHC-CCCceEEEecchhhHHHHH-HHHhhcCccEEEEehhHHHHhh--------hhccc-CCc------eEEEe
Q 000101 1065 WKSELHKWL-PSVSCIYYVGAKDQRSRLF-SQVAALKFNVLVTTYEFIMYDR--------SKLSK-VDW------KYIII 1127 (2239)
Q Consensus 1065 W~~Ef~Kwa-Pslkvvvy~Gskd~Rk~l~-~~i~~~kfdVVITTYE~L~kD~--------s~L~k-ikW------d~VII 1127 (2239)
-.+.+.... +.+.|..+.--+-. .+- ......+-.|+++||..|+-+- ..|.. ..| .+||+
T Consensus 334 AERDL~DigA~~I~V~alnK~KYa--kIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 334 AERDLRDIGATGIAVHALNKFKYA--KISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhhchhhcCCCCccceehhhcccc--cccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 666666553 33322221100000 000 0011234469999999987541 11111 123 68999
Q ss_pred cccccccC-------hhhHHHHHhh----ccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHH---HHhhhcCCc
Q 000101 1128 DEAQRMKD-------RESVLARDLD----RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA---FHDWFSQPF 1193 (2239)
Q Consensus 1128 DEAHrIKN-------~~SKlskaLk----~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~---F~e~F~kPf 1193 (2239)
||||+.|| ..++.-+++. .++..+.+..|||-.. |--++.....-++++.... |.+++ ..+
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eFi-~Av 486 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEFI-HAV 486 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHHH-HHH
Confidence 99999998 2334444444 3466677888888432 2233444445555544333 33322 223
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHH
Q 000101 1194 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1261 (2239)
Q Consensus 1194 ~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~ 1261 (2239)
.+.|...- + |-.+...++-. +-|.+ .+-.-...+-.++|+.+-+++|+.
T Consensus 487 EkRGvGAM-E------------IVAMDMK~rGmYiARQL------SFkgVsFrieEv~ls~eF~k~Yn~ 536 (1300)
T KOG1513|consen 487 EKRGVGAM-E------------IVAMDMKLRGMYIARQL------SFKGVSFRIEEVPLSKEFRKVYNR 536 (1300)
T ss_pred HhcCCcee-e------------eeehhhhhhhhhhhhhc------cccCceEEEEecccCHHHHHHHHH
Confidence 33332211 1 01111122222 22211 123345567789999999999974
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=110.11 Aligned_cols=152 Identities=24% Similarity=0.296 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ-W~~Ef~KwaPslk 1077 (2239)
.+|-|+|..++.-+ .++...++..-|-.|||+.|-..|+.-+..+ .+++...|-..|+| =.+||..-+.++.
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 48999999988544 4578889989999999998876666554322 35677779765554 5567766555433
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh----hhcccCCceEEEecccccccChhh--HHHHHhhcccc-c
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYRC-Q 1150 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lka-~ 1150 (2239)
. ..|... .......+|+|-+.|+.-. ..+..+.| ||+||.|.|++... -+-.++.-++. -
T Consensus 201 L--MTGDVT---------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 201 L--MTGDVT---------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred e--eeccee---------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccccc
Confidence 2 233321 1235678899999887542 34444455 99999999976433 22233334443 3
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhc
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS 1190 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~ 1190 (2239)
+-++|||| ..+...|.+|+.
T Consensus 268 r~VFLSAT--------------------iPNA~qFAeWI~ 287 (1041)
T KOG0948|consen 268 RFVFLSAT--------------------IPNARQFAEWIC 287 (1041)
T ss_pred eEEEEecc--------------------CCCHHHHHHHHH
Confidence 56889999 234578888875
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.1e-05 Score=99.51 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcC-CCCccEEEEecccc
Q 000101 1329 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1329 LelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~-ds~~~VfLLSTrAG 1406 (2239)
...+.+.|..+...+.++|||+..-.+++.+...|... ++. +.+.|. ..|.++++.|.+. +..-..+|+.+...
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 33455555555556667899998888899888888643 333 334554 3578899888642 00112378888999
Q ss_pred ccccCCCc--CceEEEcCCCC
Q 000101 1407 GRGLNLQS--ADTVIIYDPDP 1425 (2239)
Q Consensus 1407 GeGLNLqa--ADtVIifDppW 1425 (2239)
.+|||++. +..|||.-.|+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccCCCCceEEEEEEcCCC
Confidence 99999985 78999988776
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-05 Score=104.91 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEEccHHHHHHHHHHHHH----c---CCeEEeecCCCCHHHHHHHHHHHhcCCCCccE
Q 000101 1328 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1398 (2239)
Q Consensus 1328 KLelLdrIL~kLkat--GhKVLIFSQ~t~~LDILed~L~~----r---Giky~RLDGsts~eeRqeiL~~FNs~ds~~~V 1398 (2239)
.+.++..++..+.+. ...+|||-.....+..+.+.|.. . .+-++.+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555555555433 45799998777777776666653 2 3567889999998776654 5665566777
Q ss_pred EEEeccccccccCCCcCceEE--------EcCCCC----------CcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1399 FLLSIRAAGRGLNLQSADTVI--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1399 fLLSTrAGGeGLNLqaADtVI--------ifDppW----------NP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+|++|..+...|.+.++-+|| .||+-- +-++-.||.|||+|.- +-.+|++.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~ 542 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYT 542 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeec
Confidence 999999999999999877775 455433 3445679999988853 335566544
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-05 Score=103.11 Aligned_cols=112 Identities=17% Similarity=0.262 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000101 1329 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1329 LelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGe 1408 (2239)
...+..|+..+ ..|++|.|||......+++++++...+.+++.++|..+..+. +.|. ++.| |+=|.+...
T Consensus 269 ~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~V-viYT~~itv 338 (824)
T PF02399_consen 269 TTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYDV-VIYTPVITV 338 (824)
T ss_pred hhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----ceeE-EEEeceEEE
Confidence 33444444444 479999999999999999999999999999999998776632 3343 4555 555578889
Q ss_pred ccCCCc--CceEEEc--CCCCCcch--HHHhhhhhcccCCcceEEEEEE
Q 000101 1409 GLNLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1409 GLNLqa--ADtVIif--DppWNP~~--dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
||++-. .|.|+.| .....|.+ ..|.+||+-.+. ++++.||.-
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 999875 4666666 33344554 699999998887 567777654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00012 Score=94.20 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=74.1
Q ss_pred eEEEEEccHHHHHHHHHHHHHc----CC----eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc
Q 000101 1345 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1416 (2239)
Q Consensus 1345 KVLIFSQ~t~~LDILed~L~~r----Gi----ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD 1416 (2239)
-+|||=...+..+.+.+.|... +- .++-++|+++.++..++ |.....+++-+++||..+...|.+..+-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5888877777666666666543 21 25679999998886554 5544446778999999999999999988
Q ss_pred eEE--------EcCCCC-------CcchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1417 TVI--------IYDPDP-------NPKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1417 tVI--------ifDppW-------NP~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
+|| .|++-- -|..-.||.-|++|.|.+.+..+|||.+.
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte 389 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTE 389 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeH
Confidence 876 333321 11234456666666666778888998774
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.6e-06 Score=109.45 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=106.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHH---------HHHHCCC--CceEEEecch--
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSE---------LHKWLPS--VSCIYYVGAK-- 1085 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs-QW~~E---------f~KwaPs--lkvvvy~Gsk-- 1085 (2239)
++..+.++||+|||.+++.+|.+|.... .+..+|||||...+. -...- |...+.+ +...+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4668899999999999999999987643 457899999976332 22221 2222333 3344454332
Q ss_pred -hhHHHHH---HHHhh------cCccEEEEehhHHHHhhh--h----c--cc--CCc-------eEEEecccccccChhh
Q 000101 1086 -DQRSRLF---SQVAA------LKFNVLVTTYEFIMYDRS--K----L--SK--VDW-------KYIIIDEAQRMKDRES 1138 (2239)
Q Consensus 1086 -d~Rk~l~---~~i~~------~kfdVVITTYE~L~kD~s--~----L--~k--ikW-------d~VIIDEAHrIKN~~S 1138 (2239)
..|..+. ..+.. ...+|+|+|.+.|.++.. . + .. ..| -+|||||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 1111111 11221 257899999998876421 0 0 11 122 4799999999954 34
Q ss_pred HHHHHhhccccceEEEecCCCCC-------C--CHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCC
Q 000101 1139 VLARDLDRYRCQRRLLLTGTPLQ-------N--DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG 1197 (2239)
Q Consensus 1139 KlskaLk~Lka~rRLLLTGTPIQ-------N--nL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g 1197 (2239)
+.+.+|..++..+.|..|||--. | .-.++++|+-- ++..++|...+.+-+...+
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~V~~ 280 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVDIFY 280 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEEEee
Confidence 56788899999999999999532 0 11234444443 3567889888877766543
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-05 Score=100.61 Aligned_cols=154 Identities=19% Similarity=0.118 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ-W~~Ef~KwaP--sl 1076 (2239)
.|+++|.+++.-=. ...+.|.|.+..++-|||+.+=.+++...-. ..+.+|+|.|--.+.+ =..++..+.- ++
T Consensus 223 ~~fewq~ecls~~~--~~e~~nliys~Pts~gktlvaeilml~~~l~--~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPR--LLERKNLIYSLPTSAGKTLVAEILMLREVLC--RRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcchh--hhcccceEEeCCCccchHHHHHHHHHHHHHH--HhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 57888888874322 2367788999999999998886665543221 2235688888654444 2333444442 44
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhccc----CCceEEEecccccccC--hhhHHHHHhhcc---
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKD--RESVLARDLDRY--- 1147 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~k----ikWd~VIIDEAHrIKN--~~SKlskaLk~L--- 1147 (2239)
.+-.|.|...-- .....-.|.|+|-+.-..+...|-. ....+|||||-|-+.. .+..+-..|..+
T Consensus 299 ~ve~y~g~~~p~------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 299 PVEEYAGRFPPE------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cchhhcccCCCC------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 555566542211 1123457999999887766544432 2467899999999843 333333333322
Q ss_pred -ccc--eEEEecCCCCCCC
Q 000101 1148 -RCQ--RRLLLTGTPLQND 1163 (2239)
Q Consensus 1148 -ka~--rRLLLTGTPIQNn 1163 (2239)
... ..+++|||-.+|.
T Consensus 373 ~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred ccccceeEeeeecccCChH
Confidence 222 3799999964443
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=100.30 Aligned_cols=98 Identities=27% Similarity=0.338 Sum_probs=76.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCe-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGik-y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi 1420 (2239)
.|.=|+-||... +-.+...+..+|.. +++|.|+.+++.|..--..||+++.+|.| |++++|.|.|||| ++++|||
T Consensus 357 ~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRIIF 432 (700)
T ss_pred CCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEEEE
Confidence 466667776532 22233444555554 89999999999999999999998888775 7888999999998 5899999
Q ss_pred cCCC---------CCcchHHHhhhhhcccCCc
Q 000101 1421 YDPD---------PNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1421 fDpp---------WNP~~dlQAiGRAhRIGQk 1443 (2239)
++.- -...+..|--|||+|.|.+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccC
Confidence 9876 3455678999999999876
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-06 Score=91.43 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred CccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000101 1983 NILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFS 2023 (2239)
Q Consensus 1983 ~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~ 2023 (2239)
-||||.+|++||.++.|.+.++|++|+.|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 37999999999999999999999999999999999999774
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0026 Score=81.74 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=66.0
Q ss_pred eEEEEEccHHHHHHHHHHHH----Hc-----CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC
Q 000101 1345 RVLLFSTMTKLLDILEEYLQ----WR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1415 (2239)
Q Consensus 1345 KVLIFSQ~t~~LDILed~L~----~r-----Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA 1415 (2239)
-+|||-.-.+.+....+.|. .. .+-++-|+.+.+.+...++ |...-.+++-++|+|..+.+.|.+.++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 46666555444443333332 22 3457788999998776655 433233466789999999999999988
Q ss_pred ceEEEcCCCC--------------------CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1416 DTVIIYDPDP--------------------NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1416 DtVIifDppW--------------------NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
..|| ||-+ +-+.-.||-|||+|.|-.|..++|.
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeec
Confidence 8886 4433 2345679999999988666555543
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=86.86 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=70.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCc
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKF 1100 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kf 1100 (2239)
-.+|-.-.|.|||-.++--+. .+.-...+++||+.|+.++. +|+.+.+.+..+ .+.-....+ ...++.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~--~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~------~~~g~~ 73 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIV--REAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR------THFGSS 73 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHH--HHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS----------SSS
T ss_pred eeEEecCCCCCCcccccHHHH--HHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec------cccCCC
Confidence 346777899999987655332 22233456899999999763 455555555542 222221111 123466
Q ss_pred cEEEEehhHHHHhh-hhcccCCceEEEecccccccChhhHHHHH-hhccc-c--ceEEEecCCC
Q 000101 1101 NVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARD-LDRYR-C--QRRLLLTGTP 1159 (2239)
Q Consensus 1101 dVVITTYE~L~kD~-s~L~kikWd~VIIDEAHrIKN~~SKlska-Lk~Lk-a--~rRLLLTGTP 1159 (2239)
.|-|+||.++.... ......+|++||+||||-. ++.+-..+- |..+. . ...+++||||
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 78899999886542 3344568999999999985 444443332 22331 1 2578899999
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-05 Score=99.59 Aligned_cols=167 Identities=18% Similarity=0.145 Sum_probs=104.5
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH--------HHHHH-HHHCCCCceEEEecch
Q 000101 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN--------WKSEL-HKWLPSVSCIYYVGAK 1085 (2239)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ--------W~~Ef-~KwaPslkvvvy~Gsk 1085 (2239)
++...+|+=+-+|||+|||.+.+-+|..|....+ .-.|+||||+-.+.- -.+.| ..++.+...-.|.-..
T Consensus 70 ~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 70 RIDDKLNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred cCCCcceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 4455677777899999999999999988876554 358999999764321 12233 4444443333333322
Q ss_pred hhHHHHHHHHhhcCccEEEEehhHHHHh---hhh---------------------cccCCceEEEecccccccChhhHHH
Q 000101 1086 DQRSRLFSQVAALKFNVLVTTYEFIMYD---RSK---------------------LSKVDWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1086 d~Rk~l~~~i~~~kfdVVITTYE~L~kD---~s~---------------------L~kikWd~VIIDEAHrIKN~~SKls 1141 (2239)
..-.. .-.......|+|.+...+.++ ... |...+ -+|||||-|++... .+.+
T Consensus 149 ~~~~~--~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 149 DIEKF--KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred HHHHH--hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHHH
Confidence 11111 113345677888888887665 111 11111 37999999999865 7888
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCccc
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK 1195 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~ 1195 (2239)
.++..+.....|=.+||= .+-|.=+- -.+++.+.|...+.+.+..
T Consensus 225 ~~i~~l~pl~ilRfgATf-----kd~y~~l~----yrLDsi~Af~~~LVK~I~v 269 (985)
T COG3587 225 GAIKQLNPLLILRFGATF-----KDEYNNLV----YRLDSIDAFNQKLVKQIRV 269 (985)
T ss_pred HHHHhhCceEEEEecccc-----hhhhcCee----EEeeHHhhhhhhhhhheee
Confidence 999999998888888882 33333111 1235667777776655543
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0012 Score=89.70 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHhhc----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--------------------------
Q 000101 1001 LRDYQIVGLQWMLSLYN----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY-------------------------- 1050 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~----n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~-------------------------- 1050 (2239)
=+-+|-++++.+..+.. .+.-|+--..||+|||+.=.-++..|......+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 35689999998887664 344466678899999998877776655322211
Q ss_pred -CCeEEEechHHH----HHHHHHH-----------HHHCCCCc---eEEEecchhhHHH---HH---HHHhhcCccEEEE
Q 000101 1051 -GPHLIIVPNAVL----VNWKSEL-----------HKWLPSVS---CIYYVGAKDQRSR---LF---SQVAALKFNVLVT 1105 (2239)
Q Consensus 1051 -GP~LIVVP~SLL----sQW~~Ef-----------~KwaPslk---vvvy~Gskd~Rk~---l~---~~i~~~kfdVVIT 1105 (2239)
.-.-|++=.+.+ ..+.... ..|+..-. .+.|.|.-++-.- +. .....-...|+|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 112344433222 2233321 11222222 4556664322110 00 0012224579999
Q ss_pred ehhHHHHhhhhc---------ccCCceEEEecccccccChhh-HHHHHhh--ccccceEEEecCCCCC
Q 000101 1106 TYEFIMYDRSKL---------SKVDWKYIIIDEAQRMKDRES-VLARDLD--RYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1106 TYE~L~kD~s~L---------~kikWd~VIIDEAHrIKN~~S-KlskaLk--~Lka~rRLLLTGTPIQ 1161 (2239)
|.+.++.....+ ...--..|||||.|-+-.... .+.+.|. .....+.++||||--.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 998887553211 123346899999998843322 2333333 2345678999999533
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00026 Score=90.35 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC----CCCcc-----------hHH
Q 000101 1367 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP----DPNPK-----------NEE 1431 (2239)
Q Consensus 1367 Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp----pWNP~-----------~dl 1431 (2239)
++.++-|...++.+-..++ |.....+.+-+|++|.++.+.|.++.+.+||=... -+||. .-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5677778888887665544 55555677788999999999999999988873221 12332 223
Q ss_pred HhhhhhcccCCcceEEEEEEeh
Q 000101 1432 QAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+|--|++|.|.+.+-..|++.+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCCCCCcceeeehh
Confidence 3444555555566777888876
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=96.99 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=86.2
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEE
Q 000101 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVT 1105 (2239)
Q Consensus 1029 GLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVIT 1105 (2239)
|+|||-..+.++...+.. .+.+||++|.. +..|+...|...++...+.+|+.. ..+|.+.+..+..+...|||.
T Consensus 170 GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999887752 34699999965 889999999999986677788775 444555555677788899999
Q ss_pred ehhHHHHhhhhcccCCceEEEecccccc--cChhhHH--HHHhhc----cccceEEEecCCC
Q 000101 1106 TYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL--ARDLDR----YRCQRRLLLTGTP 1159 (2239)
Q Consensus 1106 TYE~L~kD~s~L~kikWd~VIIDEAHrI--KN~~SKl--skaLk~----Lka~rRLLLTGTP 1159 (2239)
|...+. +.--+..+|||||=|.- |...... .+.+.. +..-..|+-|+||
T Consensus 247 tRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 247 TRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred cceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 987653 22336789999998864 3322111 121222 2223356669999
|
|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-06 Score=90.26 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+..+.+| ..++...+||||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|+++
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~ 85 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLST-LEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT 85 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4568889 88888999999999999999999 9999999999999999999999 788777
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-06 Score=88.99 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
.+.+| .+|++..+||||.+|++||||+. |..+|+.|+|.++.+...|+.+ +||+|+
T Consensus 17 ~s~~F~~pv~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05505 17 FSWPFREPVTADEAEDYKKVITNPMDLQT-MQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83 (97)
T ss_pred CcccccCCCChhhcccHHHHcCCcCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688 88899999999999999999999 9999999999999999999999 888887
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=88.67 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~---~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
+.||.|++-+..+...+.++.++|+-..||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999989889999999999999999998877544332222 13677777765 455555556554
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=88.67 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~---~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
+.||.|++-+..+...+.++.++|+-..||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999989889999999999999999998877544332222 13677777765 455555556554
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.4e-06 Score=92.43 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+| .+++...|||||.+|++||||++ |.++|+.|.|.++.++..|+.+ + ||+|+ .++..|
T Consensus 22 ~s~~F~~PVd~~~~pdY~~iIk~PmDL~t-Ik~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~-----~~a~~L 95 (119)
T cd05496 22 DSEPFRQPVDLLKYPDYRDIIDTPMDLGT-VKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIY-----SMTLRL 95 (119)
T ss_pred ccccccCCCChhhcCcHHHHhCCcccHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 46788 88898999999999999999999 9999999999999999999999 3 89998 776666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 96 ~ 96 (119)
T cd05496 96 S 96 (119)
T ss_pred H
Confidence 5
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-06 Score=90.08 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000101 1728 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1728 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1794 (2239)
.+..+.+| .+++.. .+||||.+|++||||+. |..+|+.|+|.++.+...|+.+ +||+++ ..
T Consensus 19 ~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~ 92 (107)
T cd05497 19 KHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGT-IKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV-----LM 92 (107)
T ss_pred hCCcCccccCCCCcccccCCcHHHHHcCcccHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35668889 666655 69999999999999999 9999999999999999999999 899988 66
Q ss_pred ccccc
Q 000101 1795 EQVLQ 1799 (2239)
Q Consensus 1795 ~~~~~ 1799 (2239)
+..|+
T Consensus 93 A~~l~ 97 (107)
T cd05497 93 AQTLE 97 (107)
T ss_pred HHHHH
Confidence 55554
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=81.26 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH-----HhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME-----FKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lie-----~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
+|-+.|.+++..++. ... .++....|+|||-+...++..++. .....+++||++|+. .+.+....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 477899999977765 444 788899999999888888877742 245667899999966 67777777777
|
|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.9e-05 Score=94.11 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=65.2
Q ss_pred hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHH
Q 000101 1953 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARK 2032 (2239)
Q Consensus 1953 ~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~ 2032 (2239)
+++.|+. -..|.-...|.|--+ |++|.|..|...++..++|.+ -+|..|+.||+-||++||+++.-.|+.|++
T Consensus 223 ~~p~~~l-----nyg~tas~aP~YSm~-Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 223 VDPVAYL-----NYGPTASFAPGYSMT-ITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred cCchhhh-----cccchhhhccccccc-ccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 3566653 334555567999555 999999999999999999999 999999999999999999999999999998
Q ss_pred HHH
Q 000101 2033 VHD 2035 (2239)
Q Consensus 2033 L~~ 2035 (2239)
+.-
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 765
|
|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.8e-06 Score=87.28 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+..+.+| ..+++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFST-MRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFY 84 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4456778 88888999999999999999999 9999999999999999999999 888887
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.1e-06 Score=86.63 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=56.2
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+++...+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|.++ .++..|
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~~l 89 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFST-IREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVG-----RAGHNM 89 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 355678 88888999999999999999999 9999999999999999999999 788877 666555
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 90 ~ 90 (97)
T cd05503 90 R 90 (97)
T ss_pred H
Confidence 4
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.8e-06 Score=87.08 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
...+.+| ..++...+|+||.+|++||||+. |.++|+.|+|.++.+...|+.+ ++|.++
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~ 86 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLST-IKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVY 86 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4457788 88888999999999999999999 9999999999999999999998 667666
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-06 Score=85.90 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000101 1728 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1728 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1794 (2239)
.+.++.+| .+|+.. .+|+||.+|++||||+. |..+|+.|+|.++.+...|+.+ ++|.++ ..
T Consensus 17 ~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~-I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~-----~~ 90 (102)
T cd05499 17 HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGT-ISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVY-----MM 90 (102)
T ss_pred CCcccchhcCCCCccccCCCCHHHHhcCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35678899 776766 99999999999999999 9999999999999999999998 788777 55
Q ss_pred ccccc
Q 000101 1795 EQVLQ 1799 (2239)
Q Consensus 1795 ~~~~~ 1799 (2239)
+..|+
T Consensus 91 a~~l~ 95 (102)
T cd05499 91 GHQLE 95 (102)
T ss_pred HHHHH
Confidence 55544
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.7e-06 Score=85.09 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=51.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
..+.+| ..++...+|+||.+|++||||++ |..+|+.|+|.++.+..+|+.+ ++|+++
T Consensus 17 ~~~~~F~~PV~~~~~pdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05513 17 DPHGFFAFPVTDFIAPGYSSIIKHPMDFST-MKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYY 84 (98)
T ss_pred CccccccCcCCccccccHHHHHcCccCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 346788 66678889999999999999999 9999999999999999999998 888887
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=97.66 E-value=6e-06 Score=86.81 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C----CCccccCCccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S----GSWTHDRDEGEDE 1795 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~----~Sw~~~~~~~~d~ 1795 (2239)
.+.+| ..|+...+||||.+|++||||+. |..+|+.|+|.++.+...|+.+ + ||||+ .++
T Consensus 20 ~~~~F~~pv~~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~-----~~A 93 (112)
T cd05528 20 RFNAFTKPVDEEEVPDYYEIIKQPMDLQT-ILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIR-----SRA 93 (112)
T ss_pred CchhhcCCCCccccCcHHHHHcCCCCHHH-HHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHH-----HHH
Confidence 34678 88999999999999999999999 9999999999999999999999 4 67888 666
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 94 ~~L~ 97 (112)
T cd05528 94 CELR 97 (112)
T ss_pred HHHH
Confidence 6555
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.4e-06 Score=87.53 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=56.7
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.+...|+.+ ++|.++ ..+..|+
T Consensus 29 ~s~~F~~pvd~~~~pdY~~vI~~PmDL~t-I~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~-----~~A~~l~ 102 (115)
T cd05504 29 DSWPFLRPVSKIEVPDYYDIIKKPMDLGT-IKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVY-----KAGTRLQ 102 (115)
T ss_pred CchhhcCCCCccccccHHHHhcCcccHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 35678 89999999999999999999999 9999999999999999999998 888888 6666655
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.4e-06 Score=85.25 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|+++ ..+..|+
T Consensus 18 ~a~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~a~~l~ 91 (101)
T cd05509 18 SAWPFLEPVDKEEAPDYYDVIKKPMDLST-MEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY-----KCANKLE 91 (101)
T ss_pred CchhhcCCCChhhcCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56788 88999999999999999999999 9999999999999999999998 888888 6666655
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0006 Score=88.47 Aligned_cols=111 Identities=22% Similarity=0.195 Sum_probs=67.2
Q ss_pred HHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH-HhCCCCC-eEEEe-chHHH--HH---HHHHHHHHCCCCceEE-E
Q 000101 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME-FKGNYGP-HLIIV-PNAVL--VN---WKSELHKWLPSVSCIY-Y 1081 (2239)
Q Consensus 1011 wLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie-~k~~~GP-~LIVV-P~SLL--sQ---W~~Ef~KwaPslkvvv-y 1081 (2239)
.++...+.+.-.|+|.|||+|||.|.=-|+...-- ......| ++=|+ |..+. .. -..|+..+-..+...+ |
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 34456667888999999999999997655532110 0000113 33344 76543 22 3334444333333333 4
Q ss_pred ecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh-hcccCCceEEEeccccc
Q 000101 1082 VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQR 1132 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHr 1132 (2239)
.|+. .....|.++|-+.|+++.. -|.-.++..|||||||.
T Consensus 343 d~ti-----------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 343 DGTI-----------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred cccc-----------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 4442 2356799999999998864 34445799999999996
|
|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.6e-06 Score=84.47 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=60.2
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+...+++.- ..++++.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~i~~~~-------~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 11 LLKAVLDKL-------DSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLST-IKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHH-------HhCccchhhccCCChhhccCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566665 235788999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccc
Q 000101 1782 --SGSWTH 1787 (2239)
Q Consensus 1782 --~~Sw~~ 1787 (2239)
++|+++
T Consensus 83 n~~~s~~~ 90 (107)
T smart00297 83 NGPDSEVY 90 (107)
T ss_pred CCCCCHHH
Confidence 777777
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=97.62 E-value=1e-05 Score=85.22 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
.+.+| .+|++..+||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 25 ~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~L 75 (112)
T cd05510 25 HSTPFLTKVSKREAPDYYDIIKKPMDLGT-MLKKLKNLQYKSKAEFVDDLNL 75 (112)
T ss_pred cccchhcCCChhhcCCHHHHhcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46789 99999999999999999999999 9999999999999999999998
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.3e-06 Score=85.21 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=54.4
Q ss_pred cccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000101 1730 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1730 ~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
..+.+| ..++.. .+||||.+|++||||+. |.++|+.|+|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~ 93 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLST-IRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVY-----KYCT 93 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 455677 555544 79999999999999999 9999999999999999999999 889888 6665
Q ss_pred ccc
Q 000101 1797 VLQ 1799 (2239)
Q Consensus 1797 ~~~ 1799 (2239)
.|+
T Consensus 94 ~l~ 96 (108)
T cd05495 94 KLA 96 (108)
T ss_pred HHH
Confidence 554
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.6e-06 Score=84.31 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1727 NSRRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
+++.++.+| ..++ ...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|.++ .
T Consensus 16 ~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~ 89 (102)
T cd05498 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLST-IKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVH-----A 89 (102)
T ss_pred CCccccCcccCcCCccccCCCcHHHHccCCCcHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 567888999 5444 4469999999999999999 9999999999999999999998 888777 5
Q ss_pred cccccc
Q 000101 1794 DEQVLQ 1799 (2239)
Q Consensus 1794 d~~~~~ 1799 (2239)
.+..|+
T Consensus 90 ~a~~l~ 95 (102)
T cd05498 90 MARKLQ 95 (102)
T ss_pred HHHHHH
Confidence 555444
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.012 Score=78.91 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=91.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+.....-+..+..+|..|||-+.....-+.+...|...|++...|+-.-. .|+.-+-.+. +..-.+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A---G~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA---GQPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc---CCCCccccccc
Confidence 446888888888888999999999999999999999999999999988877655 4444444443 23334788999
Q ss_pred ccccccCCCc-Cc----------eEEEcCCCCCcchHHHhhhhhcccCCc
Q 000101 1405 AAGRGLNLQS-AD----------TVIIYDPDPNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1405 AGGeGLNLqa-AD----------tVIifDppWNP~~dlQAiGRAhRIGQk 1443 (2239)
-+|+|-||.- .+ +||=-...-+-..+.|--||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 9999999873 22 567777778888888999999999943
|
|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=97.55 E-value=1.4e-05 Score=84.13 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+.+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~ 83 (112)
T cd05511 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQT-IRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYT 83 (112)
T ss_pred CCchhhcCCCChhhcccHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456788 99999999999999999999999 9999999999999999999998 777776
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=97.40 E-value=1.8e-05 Score=82.78 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=55.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
..+.+| .+|+. .+|+||.+|++||||++ |..+|++ |+|+++.+...|+.+ ++|+++ ..+
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~t-I~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~a 92 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSL-IRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVA-----QAG 92 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHH-HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 567888 77777 89999999999999999 9999999 699999999999999 888888 666
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 93 ~~l~ 96 (109)
T cd05502 93 KELE 96 (109)
T ss_pred HHHH
Confidence 6665
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00019 Score=97.28 Aligned_cols=99 Identities=14% Similarity=0.267 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000101 1939 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2018 (2239)
Q Consensus 1939 q~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~ 2018 (2239)
++.|..++.+|... |..| +|...-.+.++|||+++ |++|||+.++..++....|.++++|..|+.||+.||+.
T Consensus 567 ~kLl~~~l~~lq~k-D~~g-----if~~pvd~~e~pdy~~i-ik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKK-DSYG-----IFAEPVDPSELPDYIDI-IKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred HHHHHHHHHHhhcc-cccC-----ceeeccChhhcccHHHH-hcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 33455565555433 4444 56666778899999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2019 FYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2019 yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.-+.-.|.+|..+.++--..+..+
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhc
Confidence 99999999999999988766554443
|
|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=97.37 E-value=2.4e-05 Score=80.22 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred cccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1732 TQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1732 ~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
+.+| .+++ +..+|+||++|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ +.+..|
T Consensus 18 ~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~~a~~l 91 (99)
T cd05506 18 GWVFNAPVDVVALGLPDYFDIIKKPMDLGT-VKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVH-----TMAKEL 91 (99)
T ss_pred CccccCCCCccccCCCCHHHHHcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 5577 4444 4479999999999999999 9999999999999999999998 888888 666555
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 92 ~ 92 (99)
T cd05506 92 L 92 (99)
T ss_pred H
Confidence 4
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.36 E-value=1.2e-05 Score=103.36 Aligned_cols=236 Identities=14% Similarity=0.034 Sum_probs=164.5
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1725 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1725 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
+-+|+.+...| +||+++.+|+||-.|..||.|.. |..++.+|.|.+++....||.+ ++|.++ +
T Consensus 69 d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~-ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~-----~ 142 (629)
T KOG1827|consen 69 DDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQ-IKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIY-----K 142 (629)
T ss_pred cccCcccchhHhhccccccCCCcceeecCcccHHH-HHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhh-----h
Confidence 44899999999 99999999999999999999999 9999999999999999999988 888888 7
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000101 1794 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1873 (2239)
Q Consensus 1794 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1873 (2239)
+...|+.-+.+.+.- .+..+ .+..+.....+ .--.++..+.
T Consensus 143 ~s~~l~~~~~~~~~~----~~d~e----~s~~~~~~l~~----------------------------~~l~~~~~~~--- 183 (629)
T KOG1827|consen 143 DSGELEKYFISLEDE----KKDGE----LSMESNEELKA----------------------------GGLHYHELGP--- 183 (629)
T ss_pred hhhhhhcchhhhhcc----ccchh----hcccccccccc----------------------------CCCCcccCCC---
Confidence 777777544432211 00000 00111000000 0001111000
Q ss_pred ccccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000101 1874 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1953 (2239)
Q Consensus 1874 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~ 1953 (2239)
.+. ||-.|..+ | -| -+++..
T Consensus 184 --------------------------------~~i---------~~~~~~~g----------------d-~v--lv~~~~ 203 (629)
T KOG1827|consen 184 --------------------------------VEI---------DGTKYIVG----------------D-YV--LVQNPA 203 (629)
T ss_pred --------------------------------ccc---------cCcccccC----------------c-ee--eecCcc
Confidence 000 01001000 0 01 123333
Q ss_pred c-cCCCcc-hhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHH
Q 000101 1954 E-KEGHQI-VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEAR 2031 (2239)
Q Consensus 1954 d-~~Gr~l-~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~ 2031 (2239)
| ..|+.. +.-|++.|....||.||.+ +.-++=++-..+++..+||.....|..|+-++|-|++.|+.+..=+|.|+.
T Consensus 204 d~~~p~v~~Ier~w~~~dg~k~~~~~w~-~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~ 282 (629)
T KOG1827|consen 204 DNLKPIVAQIERLWKLPDGEKWPQGCWI-YRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPE 282 (629)
T ss_pred cccCCceeeecccccCcccccccceeEe-eCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcc
Confidence 3 556665 6788999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCC-CCchHHhhhc---ccccCCCCCC
Q 000101 2032 KVHDLFFDLLKI-AFP-DTDFREARSA---LSFTGPLSTS 2066 (2239)
Q Consensus 2032 ~L~~~f~~~~k~-~fP-~~df~~a~~a---~~~~~~~~~~ 2066 (2239)
+|.+.+.-..-- +++ +-+|.++|.- +=++.+.++.
T Consensus 283 ~ls~~dv~lcesRyn~~~K~f~kirsw~~~~p~E~~~~~~ 322 (629)
T KOG1827|consen 283 NLSEEDVFLCESRYNEQLKKFNKIRSWKAFLPREVPLTLK 322 (629)
T ss_pred cccccceeeEEeeeccchhhhccccCchhcCccccCCccc
Confidence 998776544333 333 4578888873 3344444433
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=2.7e-05 Score=76.64 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=50.4
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
..+.+| .+|+...+|+|+.+|+.||||+. |.++|+.|+|.++.++..|+.+ ++|.++
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~-I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLST-IRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHH-HHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhh-hhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 477889 88899999999999999999999 9999999999999999999988 677665
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=97.35 E-value=3.1e-05 Score=83.26 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=55.7
Q ss_pred CCccccccc-CCCCcc-cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1727 NSRRLTQIV-SPVSPQ-KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps~~-~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
.++.++.+| .+++.. .+|+||.+|+.||||.. |.++|+.|+|.++.+...|+.+ ++|-++
T Consensus 40 ~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~ 111 (128)
T cd05529 40 LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLET-IRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIA 111 (128)
T ss_pred ccCcccccccCCCCccccCCcHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 588899999 888888 99999999999999999 9999999999999999999998 777666
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=97.27 E-value=3.2e-05 Score=76.94 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
+....+| .+|+...+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++++++
T Consensus 17 ~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~ 85 (99)
T cd04369 17 RDLSEPFLEPVDPKEAPDYYEVIKNPMDLST-IKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIY 85 (99)
T ss_pred ccccHHHhcCCChhcCCCHHHHHhCcccHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678889 99999999999999999999999 9999999999999999999998 677776
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=61.15 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHHHhhccccCCCCChHHHHHhc
Q 000101 473 GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507 (2239)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (2239)
-||..|++.||+||+|||-|.+|.. +|++|+.+|
T Consensus 2 ~FT~~Ql~~L~~Qi~ayK~l~~~~p-VP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQILAYKYLARNQP-VPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHhh
Confidence 5999999999999999999999887 999999887
|
QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=97.23 E-value=3.9e-05 Score=79.42 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000101 1730 RLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1730 ~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
..+.+| ..++ +..+|+||.+|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~ 93 (103)
T cd05500 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGT-IERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVS-----QMGK 93 (103)
T ss_pred CCChhhcCCCCcccccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 345677 5544 4589999999999999999 9999999999999999999998 788887 5555
Q ss_pred ccc
Q 000101 1797 VLQ 1799 (2239)
Q Consensus 1797 ~~~ 1799 (2239)
.++
T Consensus 94 ~l~ 96 (103)
T cd05500 94 RLQ 96 (103)
T ss_pred HHH
Confidence 554
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00016 Score=76.60 Aligned_cols=55 Identities=7% Similarity=-0.022 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhhccc--ccCCCccccccCCccChHHHHHhhccCCC
Q 000101 1941 RCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEY 1999 (2239)
Q Consensus 1941 kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R--~~~PdYY~v~I~~PiDL~~I~qri~~~eY 1999 (2239)
.|..+++.|+..+ .+..+..|...+.. ...||||++ |++||||.+|..+|...+|
T Consensus 4 ~~~~~l~~l~~~~---~~~~~~pF~~PVd~~~~~~pdY~~i-IK~PMDL~ti~~kl~~~~~ 60 (114)
T cd05494 4 ALERVLRELKRHR---RNEDAWPFLEPVNPPRRGAPDYRDV-IKRPMSFGTKVNNIVETGA 60 (114)
T ss_pred HHHHHHHHHHHhh---hCCCCCCcCCCCCchhcCCCChhhh-cCCCCChHHHHHHHHcccc
Confidence 4667777775554 37889999998666 999999999 9999999999999988644
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=97.17 E-value=7.8e-05 Score=78.28 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=42.6
Q ss_pred CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1736 SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1736 ~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
.-|++.++|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 29 ~~~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 73 (109)
T cd05492 29 KRGKATKLPKRRRLIHTHLDVAD-IQEKINSEKYTSLEEFKADALL 73 (109)
T ss_pred cCchhccCCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 55777889999999999999999 9999999999999999999998
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00024 Score=95.91 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=108.0
Q ss_pred CccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCC-ccccccCcHHHHHHHHHHH----HHHHHhh-
Q 000101 1880 PSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGS-SNFSAKMSDVIQRRCKNVI----SKLQRRI- 1953 (2239)
Q Consensus 1880 psrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs-~~~~~kl~~~mq~kck~vl----~kl~~~~- 1953 (2239)
|-+-|.+|..|+-+.|..+---|....+--.|+.+++.|...||-+-. +- +-+..|=.-|-+.+ .+||+..
T Consensus 1294 yy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t---~~~q~mls~~~~~~~ekedk~~~lEk 1370 (1563)
T KOG0008|consen 1294 YYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLT---RQQQSMLSLCFEKLKEKEDKLWRLEK 1370 (1563)
T ss_pred hhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHH---HHHHHHHHHHHHhhchhHHHHHHHHh
Confidence 444588888888877766555555444444555566666667774433 11 11112211222221 1122211
Q ss_pred ------ccCCCc----------------chhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1954 ------EKEGHQ----------------IVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1954 ------d~~Gr~----------------l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
|.+++. =++.|...-..+..|+||.+ |++||||.+|.+++..-+|.+..||..|+.+
T Consensus 1371 ~Inplld~~d~v~~~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~k-ik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~ 1449 (1563)
T KOG0008|consen 1371 AINPLLDDDDQVAFFILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKK-IKNPMDLETILKNIPPHKYDSRSEFLDDVNL 1449 (1563)
T ss_pred hcCcccCccchhhHhhhhhHHHHHHhcchhcccccccchhhchHHHHH-hcChhhHHHHhhcCCccccccHHHHhhhhHh
Confidence 222221 12345556677889999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
++-||..||+..+..-.-|+++-.+-...+...
T Consensus 1450 i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1450 IYVNSVEYNGAESAYTKKARKIGEVGLANLLEY 1482 (1563)
T ss_pred hcccceeecCccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887777766655544
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00074 Score=81.16 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCccEEEEeccccccccCCCcC--------ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh--
Q 000101 1384 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 1453 (2239)
Q Consensus 1384 eiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA--------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva-- 1453 (2239)
...+.|+++ ...|+||| +||++||.|++- .+-|.+.++|+....+|..||+||-||.....+..+++
T Consensus 52 ~e~~~F~~g--~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDG--EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCC--CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789974 44566665 999999999962 23478999999999999999999999997654444433
Q ss_pred -hhhhhhhh
Q 000101 1454 -VVDKISSH 1461 (2239)
Q Consensus 1454 -VEEkI~s~ 1461 (2239)
.|.++...
T Consensus 129 ~gE~Rfas~ 137 (278)
T PF13871_consen 129 PGERRFAST 137 (278)
T ss_pred HHHHHHHHH
Confidence 44444443
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=69.81 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs----QW~~Ef~Kwa 1073 (2239)
+..+++-|+.|+--|. .|-|.=..||=|||+++. +.+++.... ..++=||+.+..|. +|...|-+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4456666888875442 244888999999999985 444444322 24677777766543 3888888877
Q ss_pred CCCceEE-Eecch-hhHHHHHHHHhhcCccEEEEehhHHHHh--hh-------hcccCCceEEEecccccc
Q 000101 1074 PSVSCIY-YVGAK-DQRSRLFSQVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1074 Pslkvvv-y~Gsk-d~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrI 1133 (2239)
. +.+-+ +.+.. ..|+..+ ..+|+-+|-..+..| ++ ......++++||||++.+
T Consensus 146 G-lsv~~~~~~~~~~~r~~~Y------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERREAY------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T---EEEEETTTEHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hccccCccccCHHHHHHHH------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4 44433 33332 3333332 457998888777654 11 112347899999999987
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00044 Score=90.69 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=75.5
Q ss_pred chhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHH
Q 000101 1960 IVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFD 2039 (2239)
Q Consensus 1960 l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~ 2039 (2239)
=.+.|...-++...|+||.+ |+-||||.++..++..+-|.++++|+.|+.+|++||..||.+.+.--..=..+.+-+--
T Consensus 303 ~s~~~~~kvs~~~a~~y~~i-~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~~~s~ 381 (720)
T KOG1472|consen 303 HSTPFLEKVSKEDAPNYYQI-IKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMNSKSL 381 (720)
T ss_pred cccccccCCChhhCcchHHh-hhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhccCcH
Confidence 35679999999999999999 99999999999999999999999999999999999999999876554444444444444
Q ss_pred HHHHhCCCCchH
Q 000101 2040 LLKIAFPDTDFR 2051 (2239)
Q Consensus 2040 ~~k~~fP~~df~ 2051 (2239)
.+-.++|+.++.
T Consensus 382 ~~~~~~~~~li~ 393 (720)
T KOG1472|consen 382 ALIKEIPIELIG 393 (720)
T ss_pred hHhccchhhhcc
Confidence 444788865543
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0024 Score=76.24 Aligned_cols=143 Identities=21% Similarity=0.160 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc---
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS--- 1077 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk--- 1077 (2239)
+-..|...+.|+.. +...++.-+.|+|||..++++....+.. +....++|+-|.-.. .|...|+|+-.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 55678888887764 4577888999999999999998865532 334344443343222 23333333210
Q ss_pred eEE-----------EecchhhHHHHHHHH-hhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh
Q 000101 1078 CIY-----------YVGAKDQRSRLFSQV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1145 (2239)
Q Consensus 1078 vvv-----------y~Gskd~Rk~l~~~i-~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk 1145 (2239)
... +.|... .... ....-.|-|.+..+++ .+. +.-.+||||||+++.- ......|.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymR-Grt----l~~~~vIvDEaqn~~~--~~~k~~lt 198 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMR-GRT----FENAVVILDEAQNVTA--AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhc-CCc----ccCCEEEEechhcCCH--HHHHHHHh
Confidence 000 011110 1111 1112345566655553 222 3558999999999853 55556677
Q ss_pred ccccceEEEecCCCCCCCH
Q 000101 1146 RYRCQRRLLLTGTPLQNDL 1164 (2239)
Q Consensus 1146 ~Lka~rRLLLTGTPIQNnL 1164 (2239)
++....+++++|-|-|.++
T Consensus 199 R~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 199 RLGENVTVIVNGDITQCDL 217 (262)
T ss_pred hcCCCCEEEEeCChhhccC
Confidence 8888899999999977664
|
|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00021 Score=74.21 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=41.9
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1732 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1732 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+.+| .-| ..+||||.+|++||||++ |..+|..|+|.++.+...|+.+
T Consensus 20 s~~f~~~p--~~~pdY~~iIk~PMDL~t-I~~kL~~~~Y~s~~ef~~D~~L 67 (102)
T cd05501 20 SGFFISKP--YYIRDYCQGIKEPMWLNK-VKERLNERVYHTVEGFVRDMRL 67 (102)
T ss_pred cccccCCC--CCCCchHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 3455 433 599999999999999999 9999999999999999999988
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0058 Score=70.93 Aligned_cols=147 Identities=27% Similarity=0.311 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-----HHHHCCC
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-----LHKWLPS 1075 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E-----f~KwaPs 1075 (2239)
+-++|...++.|.. ....++.-..|+|||+.|++..++++.. +....++|+-|..-+..+.-- -+|..|.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44689998888773 4567888899999999999999888763 666676666665533221110 0111111
Q ss_pred CceEE-----EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1076 VSCIY-----YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1076 lkvvv-----y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
+..+. +.+. .....+ + ..-.|-+.+..+++ -+ .+++.+||||||+++. ...+...|.++...
T Consensus 80 ~~p~~d~l~~~~~~-~~~~~~---~--~~~~Ie~~~~~~iR-Gr----t~~~~~iIvDEaQN~t--~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 80 LRPIYDALEELFGK-EKLEEL---I--QNGKIEIEPLAFIR-GR----TFDNAFIIVDEAQNLT--PEELKMILTRIGEG 146 (205)
T ss_dssp THHHHHHHTTTS-T-TCHHHH---H--HTTSEEEEEGGGGT-T------B-SEEEEE-SGGG----HHHHHHHHTTB-TT
T ss_pred HHHHHHHHHHHhCh-HhHHHH---h--hcCeEEEEehhhhc-Cc----cccceEEEEecccCCC--HHHHHHHHcccCCC
Confidence 11000 0011 111111 1 13345555555443 11 2356899999999985 34455567788888
Q ss_pred eEEEecCCCCCCCHH
Q 000101 1151 RRLLLTGTPLQNDLK 1165 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ 1165 (2239)
.+++++|-|.|.++.
T Consensus 147 skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 147 SKIIITGDPSQIDLP 161 (205)
T ss_dssp -EEEEEE--------
T ss_pred cEEEEecCceeecCC
Confidence 999999999887654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0054 Score=77.35 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----cCC----eEEeecCCCCHHHHHHHHHHHhcCCCCcc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQL----VYRRIDGTTSLEDRESAIVDFNSHDSDCF 1397 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----rGi----ky~RLDGsts~eeRqeiL~~FNs~ds~~~ 1397 (2239)
+.|+.-...|+.++...|-|+|-||..+.+++++....+. -+- .+..+.|+...++|.++-.+...+ + .
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--~-L 584 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--K-L 584 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC--e-e
Confidence 4466666778888888899999999999988776544332 221 133467899999999988776643 2 2
Q ss_pred EEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEehhhh
Q 000101 1398 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEAVVD 1456 (2239)
Q Consensus 1398 VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLvaVEE 1456 (2239)
.-+|+|.|..+|||+-..|.||++..|.+..++.|..|||+|-.... .|+|.....|+.
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ 644 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQ 644 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhh
Confidence 36899999999999999999999999999999999999999977543 344444444443
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.2 Score=63.46 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=64.4
Q ss_pred CeEEEEEccHHHHHHHHHHHHHc---------CCeEEeecCCCCHHHHHHHHHHH--hcCCCCccEEEEeccccccccCC
Q 000101 1344 HRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDF--NSHDSDCFIFLLSIRAAGRGLNL 1412 (2239)
Q Consensus 1344 hKVLIFSQ~t~~LDILed~L~~r---------Giky~RLDGsts~eeRqeiL~~F--Ns~ds~~~VfLLSTrAGGeGLNL 1412 (2239)
.-+|||-...+.++..++.+... .++++-|+ ..+.+.+++-- +..+..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 35788866655555444444311 24455565 22333332211 11123345689999999999988
Q ss_pred CcCceEEEcCCC------CCc-----------chHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1413 QSADTVIIYDPD------PNP-----------KNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1413 qaADtVIifDpp------WNP-----------~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
..+-+|| |+- +|| ..-.||.-|++|.|.+++-..|+|.+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 8776665 443 344 44568888999999999988888876
|
|
| >PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=57.75 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000101 808 AMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2239)
Q Consensus 808 ~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~e~~~~~r~~~lk~ 870 (2239)
......|..|+.+.++|.+.+...........++|..||...+++..+++++++++||++|++
T Consensus 11 ~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 11 THHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 334456899999999999988888777788899999999999999999999999999999974
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=73.37 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=53.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW-~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
|+--..|+|||+.++.++..+.. .......+++|+...+.+. ...|..-. ......
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------------------~~~~~~ 61 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKY----------------------NPKLKK 61 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhc----------------------ccchhh
Confidence 56677999999999999988821 2334567888887755443 33443322 000112
Q ss_pred EEEEehhHHHHhhh--hcccCCceEEEecccccccC
Q 000101 1102 VLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1102 VVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN 1135 (2239)
..+..+..++.... ......+++|||||||++..
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 22333333333222 23345799999999999965
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.011 Score=66.31 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=68.2
Q ss_pred HHhcCCeEEEEEccHHHHHHHHHHHHHcC----CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc--ccccccCC
Q 000101 1339 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNL 1412 (2239)
Q Consensus 1339 LkatGhKVLIFSQ~t~~LDILed~L~~rG----iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr--AGGeGLNL 1412 (2239)
+...+.++|||+..-..++.+.+++.... +.+..- + ..++..+++.|..... .+|+++. ...+|||+
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccC---eEEEEEecccEEEeecC
Confidence 34567899999999999999999997653 333222 2 3578899999997433 4788888 99999999
Q ss_pred Cc--CceEEEcCCCC-Ccch-----------------------------HHHhhhhhcccCCcceEEE
Q 000101 1413 QS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1413 qa--ADtVIifDppW-NP~~-----------------------------dlQAiGRAhRIGQkKeV~V 1448 (2239)
.+ |..||+.-.|+ +|.. ..|++||+.|-....-+.+
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 95 88999999986 3321 2488999999766544433
|
|
| >smart00573 HSA domain in helicases and associated with SANT domains | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=57.03 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000101 811 EKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2239)
Q Consensus 811 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~e~~~~~r~~~lk~ 870 (2239)
.-.|..++.|+++|.+.+..........++.|..||.+.++++.|+.++++++||++|++
T Consensus 14 d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 14 DHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445899999999999988777777777889999999999999999989999999999963
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0078 Score=63.11 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCC-eEEEechHH-HHHHHHHHHHHCC-CCceEEEecchhhHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGP-HLIIVPNAV-LVNWKSELHKWLP-SVSCIYYVGAKDQRSRLFS 1093 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k--~~~GP-~LIVVP~SL-LsQW~~Ef~KwaP-slkvvvy~Gskd~Rk~l~~ 1093 (2239)
+..+++.-+.|+|||..+-.++..+.... ....+ +.|-+|... ...+..++...+. .... ......+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l-- 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDEL-- 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHHH--
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHHH--
Confidence 34568889999999988877776664321 11122 333345443 4444444443321 1110 0001111
Q ss_pred HHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc--ccceEEEecCCC
Q 000101 1094 QVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 1159 (2239)
Q Consensus 1094 ~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L--ka~rRLLLTGTP 1159 (2239)
+..-...+....-.+|||||+|++. .......|..+ .....++|+|||
T Consensus 76 ----------------~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 ----------------RSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ----------------HHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ----------------HHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1011122333333799999999983 24444455444 566689999998
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0033 Score=85.40 Aligned_cols=179 Identities=23% Similarity=0.304 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCch--HHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLG--KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLG--KTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk 1077 (2239)
.+.+||...+.-....... ...++++.|+| ||+.+..++.+... .+.....++++|..+..+|..+...++..-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNIRL 160 (866)
T ss_pred ccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccccc
Confidence 5666666655433332222 26888999999 89998777665553 5566788999999999999999877642211
Q ss_pred eEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHh----hhhcccCCc---eEEEecccccccChh---------hHH
Q 000101 1078 CIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYD----RSKLSKVDW---KYIIIDEAQRMKDRE---------SVL 1140 (2239)
Q Consensus 1078 vvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD----~s~L~kikW---d~VIIDEAHrIKN~~---------SKl 1140 (2239)
.++... ...................+++........ ...+....| +++++||+|.+.+.. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (866)
T COG0553 161 AVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLE 240 (866)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhhH
Confidence 111111 110000000000000000023333333222 223344456 899999999987631 223
Q ss_pred HHHhhccc--cc------eEEEecCCCCCCCHHHHHHHHhhhcCcccCC
Q 000101 1141 ARDLDRYR--CQ------RRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1181 (2239)
Q Consensus 1141 skaLk~Lk--a~------rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s 1181 (2239)
+..+.... .. ..+++++||......+++...+++.+..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 241 YELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 33333221 11 2347899998888877777666666655544
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.058 Score=62.04 Aligned_cols=125 Identities=25% Similarity=0.278 Sum_probs=67.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv 1079 (2239)
+|-+-|.+++..++. +...-.+|.-.-|+|||.....++ ..+...+ ..+++++|+..... ++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALA-EALEAAG--KRVIGLAPTNKAAK---ELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT----EEEEESSHHHHH---HHHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHH-HHHHhCC--CeEEEECCcHHHHH---HHHHhh------
Confidence 478899999999875 122235777889999998655544 4444333 68899999875432 122210
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc------ccCCceEEEecccccccChhhHHHHHhhcccc-ceE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL------SKVDWKYIIIDEAQRMKDRESVLARDLDRYRC-QRR 1152 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L------~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka-~rR 1152 (2239)
.+-..|...+....... .....++||||||-.+-+ ..+...+..... ..+
T Consensus 67 ---------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 67 ---------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSGAK 123 (196)
T ss_dssp ---------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T-E
T ss_pred ---------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcCCE
Confidence 01122333332221111 023568999999998843 233344444433 568
Q ss_pred EEecCCCCC
Q 000101 1153 LLLTGTPLQ 1161 (2239)
Q Consensus 1153 LLLTGTPIQ 1161 (2239)
|+|.|-|-|
T Consensus 124 lilvGD~~Q 132 (196)
T PF13604_consen 124 LILVGDPNQ 132 (196)
T ss_dssp EEEEE-TTS
T ss_pred EEEECCcch
Confidence 999999865
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.081 Score=54.75 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+...+|.-+.|+|||..+-.++..+. ....+++++........+......+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------ 71 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------------------------ 71 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------------------------
Confidence 55678999999999977666655443 123455555444444333322211110
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccC-hhhHHHHHhhccc------cceEEEecCCCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lk------a~rRLLLTGTPIQ 1161 (2239)
..... ..........+|||||+|++.. ....+...+..+. ...++++|+++..
T Consensus 72 --------~~~~~--~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLL--FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHH--HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00000 1111223567999999999832 2234444455442 4567777777643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.06 Score=69.92 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkv 1078 (2239)
+|-.-|..+|..++. +.-.||-...|+|||++..+++.+|.+. ..+|+||++|..+ +.|....|.+-. +++
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ceE
Confidence 788899999998886 5557899999999999998888888864 5689999999884 677777777642 443
Q ss_pred EEEecchh----------------------hHHHHH------------------------HHHhhcCccEEEEehhHHHH
Q 000101 1079 IYYVGAKD----------------------QRSRLF------------------------SQVAALKFNVLVTTYEFIMY 1112 (2239)
Q Consensus 1079 vvy~Gskd----------------------~Rk~l~------------------------~~i~~~kfdVVITTYE~L~k 1112 (2239)
+-...... +-..+. ..-.....+||.||--..
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-- 559 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-- 559 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc--
Confidence 32221110 000000 001123456777774322
Q ss_pred hhhhcccCCceEEEecccccccChhhHHH
Q 000101 1113 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1113 D~s~L~kikWd~VIIDEAHrIKN~~SKls 1141 (2239)
-...|.+++|..|+||||--.-.+.+.+-
T Consensus 560 gd~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 560 GDRRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred cchhhccccccEEEEecccccCCcchhhh
Confidence 12356778999999999987665555443
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.068 Score=69.36 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=92.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHH-------
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELH------- 1070 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~------- 1070 (2239)
..|-+-|..++.+++. +..--|+-...|+|||.+..-+|..++..+ ..+||.+|+. .+.|..+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhcccccchh
Confidence 3678899999998876 222347778999999999999999888632 5789999988 5778777432
Q ss_pred ------HHCCC-----CceEEEecc----------------------h--hhHHHHH-------HHH----------hhc
Q 000101 1071 ------KWLPS-----VSCIYYVGA----------------------K--DQRSRLF-------SQV----------AAL 1098 (2239)
Q Consensus 1071 ------KwaPs-----lkvvvy~Gs----------------------k--d~Rk~l~-------~~i----------~~~ 1098 (2239)
+..+. +..++-.+. + ..++.++ ..+ ...
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11110 111111110 0 0011000 001 123
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
...||++|-..-.. ..+.+..|++||||||--...+.|.+. + -...+++|.|-|.|
T Consensus 338 n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~~cWip--v---lk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 338 NSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEPQCWIP--V---LKGKKFILAGDPKQ 393 (649)
T ss_pred ccceEEEeccchhh--hhhcccCCCEEEEehhhhhccchhhhH--H---hcCCceEEeCCccc
Confidence 45688877655443 455667899999999977665555432 2 22348999999865
|
|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.047 Score=69.26 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.|..|.-...+|-|.+=..-+......+.+|||-...|+|||+.-++++.......+....-||-|-
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 3444444578888876555555666788899999999999999999988776655554445577763
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=68.97 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~K 1071 (2239)
..|-+.|..+|.+++. +....|+-...|+|||.+++.++..++.. ..++||++|+. .+.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4688999999988764 22456888899999999998888887752 23899999987 46677776765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0027 Score=77.75 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=62.1
Q ss_pred cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000101 1972 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2038 (2239)
Q Consensus 1972 ~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~ 2038 (2239)
-.|+|-++ |+.|||+.+|.++|+-.+|.+..+|..|++||..||.+||-...-+|..|..|..+-.
T Consensus 48 map~y~~i-is~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 48 MAPNYLEI-ISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred hccchHhh-hhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 36999999 9999999999999999999999999999999999999999999999999999877643
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.083 Score=70.80 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2239)
+.|+-|+.-+..+++...+..+|+|-+.||+|||+.-|.-.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 67899999999999999999999999999999998766543
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.37 Score=61.28 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=90.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhh
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~ 1097 (2239)
..+|.-.+|+|||.++.-+..++.... .....+++|+ +-..-.-|+ +..|+-.+.+-++
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVK---------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceE----------------
Confidence 457889999999998877776665432 1234555555 222323333 4444432222111
Q ss_pred cCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh---HHHHHhhcccc--ceEEEecCCCCCCCHHHHHHHHh
Q 000101 1098 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC--QRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1098 ~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~Lka--~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
++.++..+......+ .++++||||++.+...... .+...+..... ...|.|+||--.+.+.+++.-+.
T Consensus 238 -----~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 238 -----AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred -----eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 122334443333333 3689999999999853322 33334443332 45688999988888888887776
Q ss_pred hhcCc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000101 1173 LLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1202 (2239)
Q Consensus 1173 FLlP~-----------iF~s~k~F~e~F~kPf~~~g~~~~~ 1202 (2239)
.+.+. -++..-.+...+..|+...+.....
T Consensus 311 ~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 311 PFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred CCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 55332 1344445666677787766554443
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.1 Score=69.34 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHHH-HHHHHHHHHCCCCceE
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLV-NWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~SLLs-QW~~Ef~KwaPslkvv 1079 (2239)
+.|+.++..++. +.-.+|.-..|+|||.++..++..+...... ...+++++|+.-.. ...+-+..-...+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999887776 5567899999999999988888877654322 13688889987443 333333332211110
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--------hcccCCceEEEecccccccChhhHHHHHhhccccce
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--------~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r 1151 (2239)
...... ...+-..|...+..... .-....+++||||||-.+- ...+...+..++...
T Consensus 223 ----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 223 ----AEALIA---------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKALPPNT 287 (586)
T ss_pred ----chhhhh---------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhcCCCC
Confidence 000000 00111222222221110 1112368999999998874 234555666777788
Q ss_pred EEEecCCCCC
Q 000101 1152 RLLLTGTPLQ 1161 (2239)
Q Consensus 1152 RLLLTGTPIQ 1161 (2239)
||+|.|-|-|
T Consensus 288 rlIlvGD~~Q 297 (586)
T TIGR01447 288 KLILLGDKNQ 297 (586)
T ss_pred EEEEECChhh
Confidence 9999998755
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.017 Score=79.09 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=68.5
Q ss_pred hhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 1963 LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 1963 ~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
.|...-+-++.+|||.| |..||||+++...|...-|..-+.|..|+.||++|...||++-+-.-..|...-.+.+.+|+
T Consensus 1281 ~f~~Pv~~k~v~dyy~v-i~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1281 PFPTPVNAKEVKDYYRV-ITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred CCCCccchhhccchhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhc
Confidence 45556788899999999 99999999999999999999999999999999999999999988777777666665555543
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.1 Score=61.65 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC-
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV- 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl- 1076 (2239)
+..||+-|.+.+..|++- ..+.|.++-.-||-|||-..+=+++.++. .+ ..=+-+|||..++.+-..-+...+.++
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-dg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALA-DG-SRLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHc-CC-CcEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 347999999999999873 45677899999999999777666665553 22 234668889999999877776655432
Q ss_pred ceEEEe----cchh---hH-H---HHHHHHhhcCccEEEEehhHHHH
Q 000101 1077 SCIYYV----GAKD---QR-S---RLFSQVAALKFNVLVTTYEFIMY 1112 (2239)
Q Consensus 1077 kvvvy~----Gskd---~R-k---~l~~~i~~~kfdVVITTYE~L~k 1112 (2239)
.--+|+ -... .. . +++.... ..-.|+|+|++.+..
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~-~~~gill~~PEhilS 143 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECM-RSGGILLATPEHILS 143 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHH-HcCCEEEeChHHHHH
Confidence 112221 1111 11 1 1122222 245699999998754
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.0086 Score=79.83 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=68.4
Q ss_pred cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 1972 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 1972 ~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
..|+||.+ |.+|||+.+|+.+|....|..+.+=+.|+.-||.||..||...-.|+..+..|+++|...+..++
T Consensus 23 ~~~~~~~~-~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 95 (640)
T KOG1474|consen 23 NLPAYYEI-IKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMP 95 (640)
T ss_pred cchhhhcc-cCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhccccccccc
Confidence 34999999 99999999999999999999999999999999999999999999999999999999987776654
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.14 Score=61.20 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+.||.-+.|+|||..|-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999998777766654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.17 Score=69.43 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCceEEEecchhh-HHHHHHHHhhcCc
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIYYVGAKDQ-RSRLFSQVAALKF 1100 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw-aPslkvvvy~Gskd~-Rk~l~~~i~~~kf 1100 (2239)
||.-.-|+|||..+..|...|....+......=.|+.. ..|..- ..++.++.+.+.... ...+.. +
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC------~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l----- 108 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC------VALAPGGPGSLDVTEIDAASHGGVDDARE-L----- 108 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH------HHHHcCCCCCCcEEEecccccCCHHHHHH-H-----
Confidence 79999999999999988888765332111112234431 111111 122334444332111 011100 0
Q ss_pred cEEEEehhHHHHhhh-hcccCCceEEEecccccccCh-hhHHHHHhhccccceEEEecCC
Q 000101 1101 NVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1101 dVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
..... .-...+|+++||||+|+|-.. ...+.+.|.......+++|+.|
T Consensus 109 ----------~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 109 ----------RERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ----------HHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00000 011247999999999999532 2245566666666666666544
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.13 Score=66.62 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL-N--GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l-n--GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+.++. + -|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444443332 2 389999999999998888776653
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.15 Score=69.66 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+|.++||||+|+|.. ....+.++|.......+++|..|-
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 4799999999999942 334556666666677778877553
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.14 Score=68.46 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHHHCCCCce
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHKWLPSVSC 1078 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLLsQW~~E-f~KwaPslkv 1078 (2239)
+-+.|+.++...+. +.-.||.-..|+|||.++..++..+..... ....+++++|+.-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999977765 455789999999999998888887765322 23467788898754332222 3221111100
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--------hhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
....+. .+..-..|...+.... ..-....+++||||||-.+- -......+..++..
T Consensus 229 -----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~~ 292 (615)
T PRK10875 229 -----TDEQKK---------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPPH 292 (615)
T ss_pred -----chhhhh---------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhcccC
Confidence 000000 0011122222222110 01123467999999998873 34455666778888
Q ss_pred eEEEecCCCCC
Q 000101 1151 RRLLLTGTPLQ 1161 (2239)
Q Consensus 1151 rRLLLTGTPIQ 1161 (2239)
.||+|-|-|-|
T Consensus 293 ~rlIlvGD~~Q 303 (615)
T PRK10875 293 ARVIFLGDRDQ 303 (615)
T ss_pred CEEEEecchhh
Confidence 89999998755
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.14 Score=69.62 Aligned_cols=134 Identities=22% Similarity=0.195 Sum_probs=79.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|.+-|.+++..+.. +.-.+|.-..|+|||.++-+++..+.. .+...++++++|+........+... ..
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~g----~~- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVTG----LT- 391 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhcC----Cc-
Confidence 4799999999988753 446789999999999877666655443 2222467888898866654443211 00
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCC
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.....+++. . ..+-. .... .-.....++||||||+.+-. ......+..++...+|+|-|-
T Consensus 392 ------a~Tih~lL~---~-~~~~~------~~~~--~~~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 392 ------ASTIHRLLG---Y-GPDTF------RHNH--LEDPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVGD 451 (720)
T ss_pred ------cccHHHHhh---c-cCCcc------chhh--hhccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEECc
Confidence 000011110 0 00000 0000 00124678999999999842 234555566777789999998
Q ss_pred CCCC
Q 000101 1159 PLQN 1162 (2239)
Q Consensus 1159 PIQN 1162 (2239)
|-|-
T Consensus 452 ~~QL 455 (720)
T TIGR01448 452 TDQL 455 (720)
T ss_pred cccc
Confidence 7653
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.24 Score=66.90 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCceEEEecccccccChh-hHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN~~-SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
-+|+++||||+|.|.+.. ..+.++|.......+++|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 478999999999996432 3456666666667788888774
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.07 Score=68.85 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=58.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHH-----HHCCCCceEEEecchhhHHHH--HHHHhh
Q 000101 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELH-----KWLPSVSCIYYVGAKDQRSRL--FSQVAA 1097 (2239)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP-~SLLsQW~~Ef~-----KwaPslkvvvy~Gskd~Rk~l--~~~i~~ 1097 (2239)
..||+|||+++.++|++++. ..+..+|+.|- ++++..-..-|. +++- -.++.|.+..-..+.. +.. ..
T Consensus 4 matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fse-hn 79 (812)
T COG3421 4 MATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSE-HN 79 (812)
T ss_pred cccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCc-cC
Confidence 57999999999999999874 45677888874 556654333221 1110 1112222221111110 000 22
Q ss_pred cCccEEEEehhHHHHhhh----------hcccCCceEEEecccccc
Q 000101 1098 LKFNVLVTTYEFIMYDRS----------KLSKVDWKYIIIDEAQRM 1133 (2239)
Q Consensus 1098 ~kfdVVITTYE~L~kD~s----------~L~kikWd~VIIDEAHrI 1133 (2239)
....|++||.+.+..+.. .|.. .--++|-||||++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhl 124 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHL 124 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhh
Confidence 355789999888876521 1222 2235678999999
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.2 Score=62.23 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH---------------HHHH
Q 000101 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV---------------NWKS 1067 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs---------------QW~~ 1067 (2239)
-||.-++..|+. ..-.=..|.-.-|+|||+.|+|.-++-...++.+..++|--|.--+. -|..
T Consensus 231 ~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq 308 (436)
T COG1875 231 AEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQ 308 (436)
T ss_pred HHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHH
Confidence 489888887764 11122456778899999999887666555566666655544543332 2333
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY 1147 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L 1147 (2239)
-|.. ++.++.-..... -..+...+......|.-.||= +-+ .+.-.+||||||+++-- ..+-..|.+.
T Consensus 309 ~i~D---nLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~I---RGR----Sl~~~FiIIDEaQNLTp--heikTiltR~ 375 (436)
T COG1875 309 AIFD---NLEVLFSPNEPG-DRALEEILSRGRIEVEALTYI---RGR----SLPDSFIIIDEAQNLTP--HELKTILTRA 375 (436)
T ss_pred HHHh---HHHHHhcccccc-hHHHHHHHhccceeeeeeeee---ccc----ccccceEEEehhhccCH--HHHHHHHHhc
Confidence 2211 111111000000 001111122223333333331 111 23456899999999842 2333445566
Q ss_pred ccceEEEecCCCCCCC
Q 000101 1148 RCQRRLLLTGTPLQND 1163 (2239)
Q Consensus 1148 ka~rRLLLTGTPIQNn 1163 (2239)
-..-++.|||-|.|-+
T Consensus 376 G~GsKIVl~gd~aQiD 391 (436)
T COG1875 376 GEGSKIVLTGDPAQID 391 (436)
T ss_pred cCCCEEEEcCCHHHcC
Confidence 6677999999986543
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.62 Score=57.42 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCCCCHHHHH
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1168 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELw 1168 (2239)
..|.+|||||+|.|-. ....+.+.+..+....+++|+.+....-+..|-
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 3689999999999943 333455555555566678887775444333333
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.15 Score=51.95 Aligned_cols=42 Identities=24% Similarity=0.104 Sum_probs=28.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ 1064 (2239)
.+.+|.-.+|+|||..+..++..+... ...++++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEcccc
Confidence 456889999999998887777654321 125677776554443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.038 Score=58.89 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=34.2
Q ss_pred cccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCcc
Q 000101 1730 RLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEI 1769 (2239)
Q Consensus 1730 ~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~y 1769 (2239)
..+.+| ..++. ...||||.+||+||||++ |..+|.++.+
T Consensus 19 ~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~t-i~~kl~~~~~ 60 (114)
T cd05494 19 EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGT-KVNNIVETGA 60 (114)
T ss_pred CCCCCcCCCCCchhcCCCChhhhcCCCCChHH-HHHHHHcccc
Confidence 456778 66677 889999999999999999 9999999987
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.64 Score=62.48 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+|.++||||+|+|.. ....+.++|.......+++|+.|
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 4789999999999953 33345566666566667777655
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.21 Score=68.86 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=77.0
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-----HHHHHHHHHHCCCCceEEEecchhhHH
Q 000101 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-----VNWKSELHKWLPSVSCIYYVGAKDQRS 1089 (2239)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL-----sQW~~Ef~KwaPslkvvvy~Gskd~Rk 1089 (2239)
+|+.+.+.+++...|+|||++|=..+.. ....+.++-|+|...+ .-|...|.+. -++.++-..|....-.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 5667788999999999999876443332 4456788999998754 3488888776 4566666666544322
Q ss_pred HHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh
Q 000101 1090 RLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1137 (2239)
Q Consensus 1090 ~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~ 1137 (2239)
. ....-+|+|+|++.+-... .--..++.|+||.|.+....
T Consensus 1230 k-----l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 K-----LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred H-----HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 2 2336689999999875442 22256899999999997543
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.22 Score=57.11 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.++.-+||.|||..++.++..+.. ....++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 367889999999888888776653 2346677755
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.45 Score=63.62 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
||...-|+|||..+..+...|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 88999999999999888877764
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.77 Score=51.55 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCceEE
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIY 1080 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw-aPslkvvv 1080 (2239)
|.+.++.+..++.++ .+. |+..+.|+||+-.+..++..++....... .|-.. .....+..- .|++ .+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c---~~c~~~~~~~~~d~--~~ 72 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGEC---RSCRRIEEGNHPDF--II 72 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSS---HHHHHHHTT-CTTE--EE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC---HHHHHHHhccCcce--EE
Confidence 566677777766654 233 88899999999999999988875433322 11111 111122211 1222 22
Q ss_pred EecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc--c--cCCceEEEeccccccc-ChhhHHHHHhhccccceEEEe
Q 000101 1081 YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL--S--KVDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1081 y~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L--~--kikWd~VIIDEAHrIK-N~~SKlskaLk~Lka~rRLLL 1155 (2239)
+......+ .+ .-+.+..-...+ . ...|+++||||||+|. +....+.+.|.......+++|
T Consensus 73 ~~~~~~~~------------~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 73 IKPDKKKK------------SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp EETTTSSS------------SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred Eecccccc------------hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 22111100 00 001111111111 1 1369999999999994 355567788888888888888
Q ss_pred cCCCCCC
Q 000101 1156 TGTPLQN 1162 (2239)
Q Consensus 1156 TGTPIQN 1162 (2239)
+.+=..+
T Consensus 138 ~t~~~~~ 144 (162)
T PF13177_consen 138 ITNNPSK 144 (162)
T ss_dssp EES-GGG
T ss_pred EECChHH
Confidence 7764333
|
... |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.34 Score=59.22 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLLsQ 1064 (2239)
+.+.||.-+.|+|||..|-++...+..... ..++++.|....++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~ 105 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQ 105 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHH
Confidence 445688999999999999888776654221 2245444444444433
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.3 Score=59.51 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAV 1061 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~-~GP~LIVVP~SL 1061 (2239)
+.+.+|..+.|+|||..|.++...+...... .++++.|....+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 4466888999999999998777766542211 235555544333
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.47 Score=64.58 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.|-.-|+.++...+......+ |+.. .|+|||-+...+|..|... .+.+|+.+=++ .+.|..-.+..+--.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~L--I~GM-PGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~~i~--- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYAL--ILGM-PGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGFGIY--- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhccchhe--eecC-CCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhccCcc---
Confidence 567789999887775433322 5554 7999998888888777652 34688888654 788887777665321
Q ss_pred EEEecchhhHHHHHHH----------------HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1079 IYYVGAKDQRSRLFSQ----------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~----------------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
++-.|........... .......||.||---+. ...|....|||+|||||--+.-+-+
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~~---- 813 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPLC---- 813 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccchh----
Confidence 2223332221111111 11234456666643332 3456677899999999987642221
Q ss_pred HhhccccceEEEecCCCCC
Q 000101 1143 DLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQ 1161 (2239)
|--+....+..|-|-+.|
T Consensus 814 -LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 814 -LGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred -hhhhhhcceEEEeccccc
Confidence 222334456666666533
|
|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.2 Score=54.60 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=60.6
Q ss_pred cCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000101 1981 GNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2048 (2239)
Q Consensus 1981 I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~ 2048 (2239)
-..|.||.-+.+|++.+.|.+|.+|..||=.++.-++.=-+...|+.+.-..+.-+|+.+|..+||-.
T Consensus 56 ~~~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf 123 (131)
T cd05493 56 ELPPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWF 123 (131)
T ss_pred CCCcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccc
Confidence 34589999999999999999999999999999988887777777888887888999999999999943
|
ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.43 Score=57.47 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
....|+. .+.|.+|....|+|||..+.++...+..
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3445664 3677899999999999999998877764
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=91.95 E-value=5.3 Score=54.99 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
..|.||.-+.|+|||..+-++...+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998777766654
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.8 Score=61.08 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH-HCCCCceEE
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK-WLPSVSCIY 1080 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~K-waPslkvvv 1080 (2239)
|...+..|...+..+ .+. |+....|+|||..+.++...+....+..+--.-.|+. +..|.. ......++.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~------C~~i~~~~~~~~dvie 91 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES------CVALAPNGPGSIDVVE 91 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH------HHHhhcccCCCceEEE
Confidence 455555555544433 233 7899999999999988887776422211111222222 222221 112334444
Q ss_pred Eecchhh-HHHHHHHHhhcCccEEEEehhHHHHhhhhc-ccCCceEEEecccccccCh-hhHHHHHhhccccceEEEecC
Q 000101 1081 YVGAKDQ-RSRLFSQVAALKFNVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTG 1157 (2239)
Q Consensus 1081 y~Gskd~-Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L-~kikWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTG 1157 (2239)
+.+.... ...+. . +....... ...++.++||||+|.|... ...+.+.|.......+++|..
T Consensus 92 idaas~~gvd~iR-e---------------l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 92 LDAASHGGVDDTR-E---------------LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred eccccccCHHHHH-H---------------HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4332211 11110 0 11111111 1236899999999999542 223445555555555666544
Q ss_pred C
Q 000101 1158 T 1158 (2239)
Q Consensus 1158 T 1158 (2239)
|
T Consensus 156 t 156 (584)
T PRK14952 156 T 156 (584)
T ss_pred C
Confidence 5
|
|
| >PF13892 DBINO: DNA-binding domain | Back alignment and domain information |
|---|
Probab=91.73 E-value=3.6 Score=45.68 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHhccCCCcchHHHHHHHHHhHhhhHHHHHHhhhhh
Q 000101 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916 (2239)
Q Consensus 839 ~r~v~~~h~~~~~~~~kr~e~~~~~r~~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~lL~qte~~l~~l~~~v 916 (2239)
.|.+..|-.+.++++.....+..++.++..+.+++.. + . +.+..+|.+||+|||.|.|+++.++
T Consensus 70 ~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e----~--------~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 70 MREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E----A--------KRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H----H--------HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556666666666655444444556666655544321 1 1 1222458899999999999998654
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.5 Score=50.66 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
..+.+|.-+.|+|||..+.++..++... +..++.+....+..|..++..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~--------------------------- 86 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQADPEVLE--------------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHHhHHHHHh---------------------------
Confidence 4456899999999999988877665531 223455555544444311110
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccCh---hhHHHHHhhcc-ccceEEEecCCC
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGTP 1159 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~L-ka~rRLLLTGTP 1159 (2239)
.+. ..++|||||+|.+... ...+...+..+ ....++++|+|.
T Consensus 87 -----------------~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 87 -----------------GLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -----------------hcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 011 2368999999998643 33445444443 233578888774
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.62 Score=56.98 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1006 IVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1006 leGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Li 1044 (2239)
...+.++.....++. +.+|.-+.|+|||..+.++..++.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334555555444444 568999999999999988887765
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.53 Score=59.19 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|..++..+...+..+. .-||.-+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5666777777776554 2488999999999999988887765
|
|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.041 Score=78.38 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=47.1
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1732 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1732 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+.|| .+++.+..|+||.||++||||++ |..+|.-|.|.+..++.-|+.+
T Consensus 1319 awPFlepVn~~~vp~Y~~IIk~Pmdl~t-ir~k~~~~~Y~~~eef~~Di~l 1368 (1404)
T KOG1245|consen 1319 AWPFLEPVNPKEVPDYYDIIKKPMDLST-IREKLSKGIYPSPEEFATDIEL 1368 (1404)
T ss_pred cchhhccCChhhcccHHHHhcChhHHHH-HHHHHhcccCCCHHHHHHHHHH
Confidence 5788 99999999999999999999999 9999999999999999999997
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.27 Score=65.10 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=100.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH-HHHH---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE-LHKW---LP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~E-f~Kw---aP 1074 (2239)
...|||.+-++-|..-. -....+.-..-+|||...+.+|.|.+. ...+|+|+|.|+. ++..|..+ |... .|
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 68899999887766422 234467777889999999888888875 3457999999987 66777754 4333 23
Q ss_pred CCceEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEeccccccc----Chhh---HHHHHhhc
Q 000101 1075 SVSCIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK----DRES---VLARDLDR 1146 (2239)
Q Consensus 1075 slkvvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIK----N~~S---KlskaLk~ 1146 (2239)
.+.-.+... ..+....+.. ....+-.+.++.... ...|.....++||+||.+++- +... ...+....
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~-k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~t 166 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILY-KRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKT 166 (557)
T ss_pred HHHHHhCchhhcccCCchhh-eecCCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhh
Confidence 333222220 0111111110 111122244444332 345777889999999999982 2223 33334445
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
|.....+++..||.......++.++.
T Consensus 167 f~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 167 FGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 55677899999998776666665544
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.4 Score=57.51 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.4
Q ss_pred CceEEEecccccccCh-hhHHHHHhhccccceEEEecCCCCCCCHHH
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTPIQNnL~E 1166 (2239)
++++|||||+|.|... ...+.+.|.......+++|+.|-...-+.-
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 6889999999998531 223455555545555677766644433333
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=90.62 E-value=3.1 Score=53.78 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=80.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVV--P~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
..+|+-.+|+|||.+++.++.++....+. ..+++|. |-.... ...+..|+..+.+-++
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGA--VEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHH--HHHHHHHHHHhCCceE-----------------
Confidence 44677889999999988887776511222 3455554 221100 1223333311111111
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh---HHHHHhhc--cccceEEEecCCCCCCCHHHHHHHHhh
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDR--YRCQRRLLLTGTPLQNDLKELWSLLNL 1173 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~--Lka~rRLLLTGTPIQNnL~ELwsLLnF 1173 (2239)
++.+...+......+. .+++||||.+-+...... .+...+.. ......|+|++|.-.+.+.+++..+..
T Consensus 283 ----~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 283 ----VVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred ----ccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 1122222222222222 589999999876533221 22233331 233457889999988889998888887
Q ss_pred hcCc-c----------cCChHHHHhhhcCCcccCCCC
Q 000101 1174 LLPE-V----------FDNRKAFHDWFSQPFQKEGPT 1199 (2239)
Q Consensus 1174 LlP~-i----------F~s~k~F~e~F~kPf~~~g~~ 1199 (2239)
+.+. + ++..-.+......|+...+..
T Consensus 357 ~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 357 LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred CCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCC
Confidence 6552 1 233334444455666654433
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.9 Score=52.66 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=26.6
Q ss_pred CceEEEecccccccCh--hhHHHHHhhccccceEEEecCCCC
Q 000101 1121 DWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRRLLLTGTPL 1160 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~--~SKlskaLk~Lka~rRLLLTGTPI 1160 (2239)
..++|||||+|++... ...+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4679999999998322 233444455566677888887643
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.4 Score=48.78 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCc--CceEEEcCCCC
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 1425 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqa--ADtVIifDppW 1425 (2239)
...+...+++.|..... ..+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~--~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACE--NAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCC--CEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34467889999986322 147888877999999996 78899988775
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.8 Score=52.71 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
+..-|...+.++......+.|.+|.-..|+|||-.+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 445666666554333445778899999999999999988877764
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.7 Score=58.29 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.6
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
++++|||||+|.|.. ....+.+.|.......+++|+.|-+.
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 688999999999953 23345556666666667777655433
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.3 Score=58.44 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=26.8
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.|.++||||+|+|.. ....+.+.|...+...+++|++|
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 689999999999953 22345566666666667777665
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.04 E-value=1 Score=56.17 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.++|+|....+.++.. .+-.+. |+..+.|+|||..|..+...+..
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4688888888888764 222333 67899999999999999988875
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.4 Score=59.37 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=26.3
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+|+++||||+|+|-. ....+.+.|.......+++|+.|
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3689999999999842 33345555555555556777665
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=4.5 Score=51.97 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=85.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec--h--HHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhh
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP--N--AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAA 1097 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP--~--SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~ 1097 (2239)
.+|+-.+|+|||..+..+...+.. ....+++|.- - ..+.||.. |+...
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk~----yae~l--------------------- 295 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQD----YVKTI--------------------- 295 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHH----Hhhhc---------------------
Confidence 467888999999988888776653 2234555553 2 25566653 32111
Q ss_pred cCccEE-EEehhHHHHhhhhccc-CCceEEEecccccccChhh---HHHHHhhccccc-eEEEecCCCCCCCHHHHHHHH
Q 000101 1098 LKFNVL-VTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRES---VLARDLDRYRCQ-RRLLLTGTPLQNDLKELWSLL 1171 (2239)
Q Consensus 1098 ~kfdVV-ITTYE~L~kD~s~L~k-ikWd~VIIDEAHrIKN~~S---KlskaLk~Lka~-rRLLLTGTPIQNnL~ELwsLL 1171 (2239)
++.++ +.+...+......+.. .++++||||-+=+..+... .+.+.+...... ..|.|++|--.+.+.++...|
T Consensus 296 -gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 296 -GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred -CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 22222 2233444433333432 3689999998877543322 233333322233 345578887777777777777
Q ss_pred hhhcCc-----------ccCChHHHHhhhcCCcccCCCCCCCCh
Q 000101 1172 NLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNADD 1204 (2239)
Q Consensus 1172 nFLlP~-----------iF~s~k~F~e~F~kPf~~~g~~~~~e~ 1204 (2239)
+.+... .+|..-.+...+..|+...+......+
T Consensus 375 ~~~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~VPe 418 (436)
T PRK11889 375 KDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKK 418 (436)
T ss_pred cCCCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCCCc
Confidence 665332 134444566667788776655444433
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.2 Score=51.28 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=25.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEE
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII 1056 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIV 1056 (2239)
+.+|....|+|||..+.+++.++... ...+++|
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~i 133 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR---GKSVLII 133 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 45899999999999999999888752 2345555
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.3 Score=58.39 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
-+|+++||||+|.|-. ....+.+.|.......+++|..|-..
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 4789999999999953 23345566666555666666555333
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.53 E-value=3.1 Score=50.64 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~E 1068 (2239)
+.+.+|.-++|+|||..+.+++.++... ..+++++.-..++..+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIKST 160 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHHH
Confidence 3456899999999999999998888753 2455555544455544433
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.8 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Li 1044 (2239)
-||..+.|+|||..|-++...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 38999999999988887776654
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.3 Score=59.43 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+.++. +. ||...-|+|||..+.++...|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555555554432 33 88999999999999888877754
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.4 Score=48.86 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccc--cccccCCCc--CceEEEcCCCC
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 1425 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrA--GGeGLNLqa--ADtVIifDppW 1425 (2239)
+..++++.|+........+|+++.- ..||||++. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4578999998632211246666665 899999996 78999988885
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=2.3 Score=56.09 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+..+. +. |+.-+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444555544444332 23 89999999999999888877764
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.89 E-value=2 Score=53.47 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl 1076 (2239)
.++|+|....+.+...+..+. + -|+....|+||+..|.++...++........ .|+.. +|.. ..--|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~c---~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRTR---QLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchHH---HHHh--cCCCCCE
Confidence 589999999998888765442 2 3788999999999999999888753211111 12111 1110 0111443
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcc----cCCceEEEecccccccC-hhhHHHHHhhccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~r 1151 (2239)
.++...-.....+ ..-. ...+.+......+. .-.++++|||+|++|.. ....+-++|..-....
T Consensus 76 ~~i~~~p~~~~~k--------~~~~---I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDK--------LRTE---IVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGR 144 (319)
T ss_pred EEEecCCCccccc--------cccc---ccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCC
Confidence 3331000000000 0000 11122221111111 12689999999999943 3445677777766666
Q ss_pred EEEecCCCCCCCHHHHHH
Q 000101 1152 RLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELws 1169 (2239)
.++|++.-...-+.-|-+
T Consensus 145 ~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 145 YLWLISAQPARLPATIRS 162 (319)
T ss_pred eEEEEECChhhCchHHHh
Confidence 777766543333334433
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=3.3 Score=55.52 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccE
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdV 1102 (2239)
|+.-+-|+|||..+.++..++....+..+...-.|+. +.+|.. .....++.+.|...........
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~------c~~i~~-g~~~d~~eid~~s~~~v~~ir~-------- 106 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP------CVEITE-GRSVDVFEIDGASNTGVDDIRE-------- 106 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH------HHHHhc-CCCCCeeeeeccCccCHHHHHH--------
Confidence 7899999999999988887776432211111111221 222222 1233444444432211000000
Q ss_pred EEEehhHHHHhhhhc-ccCCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1103 LVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1103 VITTYE~L~kD~s~L-~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
+....... ...+|.++||||+|.|-. ....+.+.|.......+++|+.|
T Consensus 107 -------l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 107 -------LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred -------HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 01111111 123689999999999843 33356666666666666666555
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=88.70 E-value=2.5 Score=52.54 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHh-hcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSL-YNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLlsL-~~n--~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+.|++.|...+.- ... ..+.+|.-+.|+|||..+-.++..+.+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77777776555443 222 245688999999999998888877654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.7 Score=50.74 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
+.-.++..+.-++..++.+.|.+|.-..|+|||..++|+...+. .++ .+++++.=..++.++...+.
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHh
Confidence 33445555555555566788889999999999999999998888 332 35666665667776665553
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=3.2 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=26.3
Q ss_pred CceEEEecccccccCh-hhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
++.++||||+|.+... ...+.+.|......-+++|+.|-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6899999999999542 23455555555555667776663
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=3.1 Score=55.29 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHH---HCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHK---WLP 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~K---waP 1074 (2239)
..|.|+|...+.+|.. ... .++.-.=..|||..+.++++++.-... ...+++++|..- ...-.+.+.. -.|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~-~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRF-NACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeE-EEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4799999998887632 222 355556789999998877766554333 346788888442 1111123322 223
Q ss_pred CCce-EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-cccc--c
Q 000101 1075 SVSC-IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC--Q 1150 (2239)
Q Consensus 1075 slkv-vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lka--~ 1150 (2239)
.+.. .+...+. . .+. + ..+..|.+.|-+ ..........++||||+|.+++.. .++..+. .+.. .
T Consensus 133 ~l~~~~i~~~~~-~--~I~--l-~NGS~I~~lss~-----~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEWNK-G--SIE--L-ENGSKIGAYASS-----PDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeecCc-c--EEE--e-CCCCEEEEEeCC-----CCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2110 0000000 0 000 0 112222222211 223445577899999999998753 3333332 2222 2
Q ss_pred eEEEecCCCC
Q 000101 1151 RRLLLTGTPL 1160 (2239)
Q Consensus 1151 rRLLLTGTPI 1160 (2239)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4677777883
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=88.27 E-value=4.9 Score=52.18 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=86.9
Q ss_pred cHHHHHH-HHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1327 GKLWILD-RILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1327 GKLelLd-rIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
.++.... .+|+.+. ....++|||...=--.-.|..+|+..++.|+.++--++..+-.++-..|.. +...++|+|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH--GRKPILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc--CCceEEEEEh
Confidence 3555544 4777777 345689999765555555889999999999999999999999999999996 4566777775
Q ss_pred cccc-cccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC
Q 000101 1404 RAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1404 rAGG-eGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ 1442 (2239)
|+-= +=..|..+.+||+|.+|-+|.-|.--+.-...-.+
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 5432 23457789999999999999999988866655443
|
; GO: 0005634 nucleus |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.9 Score=57.21 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+..+. + -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444444444332 2 378999999999999888877753
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=87.95 E-value=3.3 Score=49.16 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHH
Q 000101 1003 DYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa 1041 (2239)
+.+..++..+......+. ..+|.-+.|+|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344556666655444433 357899999999977765543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=3.1 Score=57.40 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCccccCCCChHHHHHHHHHHHH-hhc-CCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 000101 992 QPSMLRAGTLRDYQIVGLQWMLS-LYN-NKL-NGI-LADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLls-L~~-n~l-nGI-LADEMGLGKTIQAIALIa~Lie 1045 (2239)
+|..|. =|+-|+.-|..++. .+. .+. ++| |.-.+|+|||.++-.++..|.+
T Consensus 753 VPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 753 VPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455443 47888887765554 332 223 333 8999999999999888877754
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.5 Score=53.54 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
|..+...+...+..+ .+ -|+.-.-|+|||..+.++..+++..
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 566666666666543 22 3789999999999999999998853
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.6 Score=55.89 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
.+|.++||||+|+|.. ....+.+.|.......+++|..|
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 3689999999999953 22345566666555556666544
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=87.21 E-value=2.9 Score=44.82 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=27.1
Q ss_pred CceEEEecccccccChhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
+-.+|||||+|++.+....+...+... ....+++||.-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999986555444444433 45689999984
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=3.4 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
.+.+|.-+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999999988777666555
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.04 E-value=3.2 Score=54.82 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+.++ ...||..+.|+|||..|-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555554433333 34689999999999999888777654
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=87.02 E-value=2.1 Score=49.83 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=66.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCccE
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdV 1102 (2239)
+|+-.+|.|||-++.-+.+++... ...+.+|+--.--.--.++++.|+..+.+-++.-.....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-------------- 67 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-------------- 67 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC--------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh--------------
Confidence 678899999999998888887653 345666663221111223344443223333332111000
Q ss_pred EEEehhHHHHhhhhcccCCceEEEecccccccChhh---HHHHHhhcc-ccceEEEecCCCCCCCHHHHHHHHhhh
Q 000101 1103 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 1174 (2239)
Q Consensus 1103 VITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~L-ka~rRLLLTGTPIQNnL~ELwsLLnFL 1174 (2239)
.-+.+......+...++++|+||-+-+..+... .+...+... .....|.|++|--+..+..+......+
T Consensus 68 ---~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 68 ---PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp ---HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred ---hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 000111222334445788999998877644322 222333333 344567788886665555555544444
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=4.7 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
-||..+-|+|||..|..+...+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 367999999999999888877764
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=2.3 Score=57.34 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..|...+..+. .-||..+.|+|||..+.+++..|..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4445555555554442 2388999999999999999888764
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=3.5 Score=55.36 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCC--e-EEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNKLN--G-ILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~ln--G-ILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+.+|...+.++.- . ||.-+.|+|||..+.+++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55566666655554432 2 8899999999999988887765
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.65 E-value=5.4 Score=47.39 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+|..+.|+|||-.+.++...+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999888888777654
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=3.2 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+..+...+..+ .+. ||.-+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 555555555544433 234 7999999999988888877664
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=86.50 E-value=4 Score=51.97 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+...+|.-.+|+|||.++..+...+....+. ..+.+|+-...-..-.+.+..|+..+.+-++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----------------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVH----------------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceE-----------------
Confidence 4456889999999999998888776543222 3455555322211112233333211111111
Q ss_pred CccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-----ccceEEEecCCCCCCCHHHHHH
Q 000101 1099 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-----ka~rRLLLTGTPIQNnL~ELws 1169 (2239)
.+.+...+......+ .+.++||||++=+.-... .+...+..+ .....|.|++|--...+.+++.
T Consensus 199 ----~~~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 199 ----AVKDGGDLQLALAEL--RNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ----ecCCcccHHHHHHHh--cCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 111222222222222 246899999997653222 233333322 2345677899976666666543
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=86.37 E-value=4 Score=56.28 Aligned_cols=125 Identities=17% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
..|-+-|..++..++. .+.-.+|....|+|||.++-+++..+. . ....+++++|+.....-..+- . ++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~-~--~g~~V~~~ApTg~Aa~~L~~~---~-g~~- 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWE-A--AGYRVIGAALSGKAAEGLQAE---S-GIE- 419 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHH-h--CCCeEEEEeCcHHHHHHHHhc---c-CCc-
Confidence 4789999999988764 123468889999999987766554433 2 234678888987654322211 0 000
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHH--hhhhcccCCceEEEecccccccChhhHHHHHhhc-cccceEEEe
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLL 1155 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lka~rRLLL 1155 (2239)
-.|-..+.. ..........++||||||-.+-.. .+...+.. .....+|+|
T Consensus 420 -------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~--~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 420 -------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR--QMARVLKEAEEAGAKVVL 472 (744)
T ss_pred -------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH--HHHHHHHHHHhcCCEEEE
Confidence 001111100 001111236789999999988532 23333432 245668999
Q ss_pred cCCCCC
Q 000101 1156 TGTPLQ 1161 (2239)
Q Consensus 1156 TGTPIQ 1161 (2239)
.|-|-|
T Consensus 473 VGD~~Q 478 (744)
T TIGR02768 473 VGDPEQ 478 (744)
T ss_pred ECChHH
Confidence 887543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=86.26 E-value=6.1 Score=49.62 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHhh----cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLY----NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~----~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
..+.+...++.++.... ..+.+.+|..++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 55666666666544322 24566689999999999999998888875
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=86.09 E-value=0.82 Score=51.52 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=27.2
Q ss_pred hcCccEEEEehhHHHHhhh--hc--ccCCceEEEecccccccC
Q 000101 1097 ALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHrIKN 1135 (2239)
....+|||++|.+|..... .+ ...+-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3467999999999986532 22 223557999999999853
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=85.84 E-value=4.4 Score=53.51 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=74.0
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000101 1323 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1401 (2239)
Q Consensus 1323 i~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLL 1401 (2239)
...|||.++...++......|.+|||.+.....+..+.+.|... +..+..+||.++..+|.+...+...++.. |++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 35689999998888888888999999999999888888888654 67888999999999998887777654433 566
Q ss_pred eccccccccCCCcCceEEEcCC
Q 000101 1402 SIRAAGRGLNLQSADTVIIYDP 1423 (2239)
Q Consensus 1402 STrAGGeGLNLqaADtVIifDp 1423 (2239)
.|+.+-. +-+...+.||+-+-
T Consensus 82 GTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred CChHHHc-CcccCCCEEEEECC
Confidence 6665322 44566777776553
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=85.65 E-value=5.3 Score=54.55 Aligned_cols=136 Identities=16% Similarity=0.088 Sum_probs=69.6
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-CeEEEe-chHHHHH-----HHHHHHHHCCCCceEEEecchh
Q 000101 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-PHLIIV-PNAVLVN-----WKSELHKWLPSVSCIYYVGAKD 1086 (2239)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~G-P~LIVV-P~SLLsQ-----W~~Ef~KwaPslkvvvy~Gskd 1086 (2239)
.+...+.-.|+--|+|+|||.++..+|+.-+....... .-.+|| |.....+ ..+|=..-. -..+.|.-.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~--g~tvgy~vR-- 463 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV--GETCGYNVR-- 463 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh--ccccccccc--
Confidence 33444666788899999999999988877654333222 123333 4443333 222211110 111111110
Q ss_pred hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc----ccceEEEecCC
Q 000101 1087 QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGT 1158 (2239)
Q Consensus 1087 ~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L----ka~rRLLLTGT 1158 (2239)
+. ......---++.+|.+-+.+.... ......++|+||.|..--..--+...+..+ +.-+.+++++|
T Consensus 464 -f~---Sa~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 464 -FD---SATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred -cc---ccccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 00 001111223667887777654321 123567899999997643333344444444 33345778888
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.49 E-value=5.1 Score=52.02 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|..+.|+|||..+-++...+..... ...++.|....++..+...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~----------------------------- 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNN----------------------------- 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcC-----------------------------
Confidence 478999999999998888877765321 22344443344444333333210
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhcc-ccceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 201 ----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 ----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred ----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 011111 1222 47799999999986532 2344444443 23345777765
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.30 E-value=3 Score=50.66 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=29.5
Q ss_pred CCceEEEeccccccc-ChhhHHHHHhhccccceEEEecCC
Q 000101 1120 VDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIK-N~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
..|.+||||||+.|- +....+-+.+.......+++|+..
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 579999999999994 344566666677777778887764
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.27 E-value=3.4 Score=51.57 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceE
Q 000101 1003 DYQIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvv 1079 (2239)
-.|...+..+...+..+ .+. |+..+-|+|||..+..++..+.......+...=.|+ ....-.....|++..+
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~-----~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT-----NCKRIDSGNHPDVHLV 83 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH-----HHHHHhcCCCCCEEEe
Confidence 34566666666655433 334 899999999999998888777643211111111121 1111122223454444
Q ss_pred EEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc----ccCCceEEEecccccccC-hhhHHHHHhhccccceEEE
Q 000101 1080 YYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1154 (2239)
Q Consensus 1080 vy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLL 1154 (2239)
...|..-. .+.++.....+ ..-.+.++||||+|+|.. ....+.+.|...+....++
T Consensus 84 ~~~~~~i~-------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 84 APDGQSIK-------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccccccCC-------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 33332111 12222111111 123689999999999943 3445666666656666777
Q ss_pred ecCC
Q 000101 1155 LTGT 1158 (2239)
Q Consensus 1155 LTGT 1158 (2239)
|+.+
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 7665
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.24 E-value=4.5 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+.-+.|+|||..+.+++..+..
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEECCCCCCHHHHHHHHHHhhcc
Confidence 89999999999999888877764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=85.24 E-value=0.8 Score=51.19 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=34.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
.+|+.+.|+|||..++.++..... ...++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 478889999999999988877663 345788888655555554444443
|
A related protein is found in archaea. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.20 E-value=3.2 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
-|+....|+|||..+.++...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 378899999999999888877654
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.09 E-value=9.7 Score=46.33 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=25.7
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
...+|||||+|.+.. ....+...+..+....+++|+++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 467999999999954 223455555555555677776653
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.87 E-value=4.2 Score=50.83 Aligned_cols=145 Identities=15% Similarity=0.067 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw-aPs 1075 (2239)
.++|+|....+.+...+.++. + -|+....|+||+..|..+..+++......++ .=.|+.- .-+... -|+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~-Cg~C~sC------~~~~~g~HPD 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA-CGFCHSC------ELMQSGNHPD 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCHHH------HHHHcCCCCC
Confidence 578888888888887765443 2 3788999999999999999888753321111 0011111 111111 133
Q ss_pred CceEEEec-chhhHHHHHHHHhhcCccEEEEehhHHHHhhhhc----ccCCceEEEecccccccC-hhhHHHHHhhcccc
Q 000101 1076 VSCIYYVG-AKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1149 (2239)
Q Consensus 1076 lkvvvy~G-skd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka 1149 (2239)
+..+.-.+ ++. .+.+.++.-...+ ..-.|+++|||+||+|.. ....+-++|..=+.
T Consensus 76 ~~~i~p~~~~~~------------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 76 LHVIKPEKEGKS------------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEEecCcCCCc------------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 32221111 000 0111121111111 123689999999999953 34456666666566
Q ss_pred ceEEEecCCCCCCCHHHHHH
Q 000101 1150 QRRLLLTGTPLQNDLKELWS 1169 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELws 1169 (2239)
...++|+++-...-+.-+.+
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 66666665533333333433
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=6.6 Score=47.78 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
+.+.+|.-++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 455689999999999999998887775
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=84.24 E-value=7.3 Score=41.71 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=24.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
+|.-..|+|||..+..++..+.. ..++++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~ 35 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDI 35 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEEC
Confidence 57778999999999888777654 3456777664
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=84.11 E-value=5.2 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
....+|..+.|+|||-.+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999988877766554
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.02 E-value=5.2 Score=52.66 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Li 1044 (2239)
|...+..+...+.++ .+. |++-+.|+|||..+..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444555555555433 233 6899999999988877776654
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=83.97 E-value=3.9 Score=50.64 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=28.3
Q ss_pred hhhcccCCceEEEecccccccC-hhhH---HHHHhhccccc--eEEEecCCC
Q 000101 1114 RSKLSKVDWKYIIIDEAQRMKD-RESV---LARDLDRYRCQ--RRLLLTGTP 1159 (2239)
Q Consensus 1114 ~s~L~kikWd~VIIDEAHrIKN-~~SK---lskaLk~Lka~--rRLLLTGTP 1159 (2239)
...|..++..++||||.|++.. ...+ ...+|+.+... --+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 3567778999999999999743 3333 33334444222 235567875
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=83.87 E-value=2.8 Score=43.79 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=23.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
||.-+.|+|||..+-.++.++ .-+++.|....+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELIS 36 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc------cccccccccccccc
Confidence 677889999998776666543 13556666655553
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=83.73 E-value=6.2 Score=53.97 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=74.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1402 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS 1402 (2239)
..+||..+...++......|.+|||.+.....+..+.+.|... |..+..+||+++..+|.+...+...++.+ |+++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 4589999888887777778999999999999988888777654 78899999999999998888887764444 5677
Q ss_pred ccccccccCCCcCceEEEcCC
Q 000101 1403 IRAAGRGLNLQSADTVIIYDP 1423 (2239)
Q Consensus 1403 TrAGGeGLNLqaADtVIifDp 1423 (2239)
|+.+- =+.+...+.||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76433 255667777777654
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.56 E-value=5.7 Score=53.16 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|++-+-|+|||..+-.+...+..
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 77999999999998888766653
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=10 Score=47.75 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec----hHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP----NAVLVNWKSEL 1069 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP----~SLLsQW~~Ef 1069 (2239)
.++.-..|+|||.++..+..++.. . ...++||.. .....||....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~-~--g~~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK-N--GFSVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCCcCcHHHHHHHHHHH
Confidence 467889999999888777766643 2 235555553 23455664433
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=7.8 Score=49.62 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|...+..+...+.++ .+ -|+..+.|+|||..|.++...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444455444443 22 478999999999999888877753
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=9.8 Score=49.68 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|.-++|+|||..+-++..++.... ....++.|....++......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 46899999999988877776665432 2234555555555544444442200
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhccc-cceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~Lk-a~rRLLLTGT 1158 (2239)
+.+......+ ...++|||||+|.+.+.. ..+...+..+. ....++||+.
T Consensus 195 ------~~~~~~~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ------KEIEQFKNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ------hHHHHHHHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 0011111122 257899999999996532 23445555443 3346778743
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=82.92 E-value=6 Score=50.54 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=54.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCcc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFN 1101 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfd 1101 (2239)
.+|....|+|||..+.++..++.+.. ....++.|....++..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 37899999999999988887776532 12344444333333322222211 0
Q ss_pred EEEEehhHHHHhhhhcccCCceEEEecccccccChh---hHHHHHhhcc-ccceEEEecCC
Q 000101 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1102 VVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 189 ----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 ----KMEEFK---EKYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred ----CHHHHH---HHHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 111111 1121 36799999999986532 2344455443 33456777776
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=82.88 E-value=3.6 Score=41.04 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=32.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~-k~~~GP~LIVVP~SLLs 1063 (2239)
.++-...|+|||-+++..+.+++.. .....++|||+|+....
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAA 55 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHH
Confidence 4568899999999999999998853 22256899999987543
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.87 E-value=4.1 Score=51.14 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
.++|+|....+.+...+..+. ++ |++-+-|+||+..|.++..+++..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 478888888888888776543 23 689999999999999999988753
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.78 E-value=5.5 Score=49.94 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
.++|++....+.+...+.++. ++ |+..+.|+||+..|..+..+++..
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 357888888888887776543 34 678999999999999999888753
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.19 E-value=8.2 Score=52.90 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=43.5
Q ss_pred ccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHH
Q 000101 1984 ILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2042 (2239)
Q Consensus 1984 PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k 2042 (2239)
++|...|.--..... -.|...+.+||.--++.+--..-.++.|...|+...+..+
T Consensus 635 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (725)
T PRK07133 635 EIDELIIKLNKNNYK----VNFQNFLEKIFGGPKHIFAISKKLINEAKIYWKAINNTKK 689 (725)
T ss_pred chHHHHHHHHHhhHH----HHHHHHHHHHhCCcceEeeccHHHHHHHHHHHHHHHhhcc
Confidence 677666654443333 4578889999999999999999999999999999887654
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=82.05 E-value=4.3 Score=56.73 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1005 QIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1005 QleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
|..-+.+++.... ...|.||.-+.|+|||..+=.+...+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 4555777776433 345679999999999988766665543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.8 Score=51.50 Aligned_cols=102 Identities=26% Similarity=0.376 Sum_probs=57.3
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHh
Q 000101 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVA 1096 (2239)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~ 1096 (2239)
.|-.|-|++...|+|||-.+.++...|+-. ...+-+...- ..++|
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~-----------------~~ke~vLELN----------ASdeR-------- 90 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGD-----------------SYKEAVLELN----------ASDER-------- 90 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhCh-----------------hhhhHhhhcc----------Ccccc--------
Confidence 345667999999999999988888777631 0111111110 01111
Q ss_pred hcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC-hhhHHHHHhhccccceEEEe
Q 000101 1097 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLL 1155 (2239)
+.+||=.+...|...+-.|...++++||+|||+.|-. ..-.+.+++.-|....|++|
T Consensus 91 --GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 91 --GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred --ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 2233323333333344456667899999999999854 23334444544554455544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=81.63 E-value=9.3 Score=45.26 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+|....|+|||-.+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 378999999999888887776654
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=81.15 E-value=8.9 Score=53.58 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..|.||.-+.|+|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34669999999999988877766554
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.15 E-value=6 Score=49.95 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lie~ 1046 (2239)
++|+|...-+.+..+.+.-.++ |+....|+|||..|..+...+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5788888887777764433344 578999999999999999888753
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.86 E-value=7.2 Score=49.67 Aligned_cols=50 Identities=28% Similarity=0.236 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHhh-c--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC
Q 000101 1000 TLRDYQIVGLQWMLSLY-N--NKLNGILADEMGLGKTVQVMALIAYLMEFKGN 1049 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~-~--n~lnGILADEMGLGKTIQAIALIa~Lie~k~~ 1049 (2239)
.-|+-|+.-+...+.-. . ...|.++.-.+|+|||.++-.++..+.+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN 72 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc
Confidence 35677777665444322 2 23457899999999999998888777765443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=12 Score=48.77 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=25.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.+|..+.|+|||..+-++..++.+... ...++.|...
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~ 169 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSE 169 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHH
Confidence 479999999999988888877765322 2244555433
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.70 E-value=3.5 Score=50.91 Aligned_cols=42 Identities=19% Similarity=-0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1004 YQIVGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1004 YQleGLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
+|...|+-|..... ...+-++....|+|||-++.++...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 57777776665443 3344588899999999999999887763
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=80.31 E-value=19 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2239)
.+.+|.-+.|+|||..+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 35689999999999887766543
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.30 E-value=6.5 Score=47.69 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=55.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH------HHHHHHHHHHCCCCceEEEecchhhHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL------VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL------sQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~ 1094 (2239)
-+.++-++|+|||+..=+++..+- ....++|+.|+.++ .-|..++.. -|...+ ....
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~~~---------~~~~--- 115 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLES-QPKVNV---------NAVL--- 115 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhcc-Cccchh---------HHHH---
Confidence 456789999999988874443322 22234456665433 336666644 111100 0000
Q ss_pred HhhcCccEEEEehhHHHHhhhhcccC-CceEEEecccccccChhhHHHHHhhc----cccceEEEecCCC
Q 000101 1095 VAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDR----YRCQRRLLLTGTP 1159 (2239)
Q Consensus 1095 i~~~kfdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrIKN~~SKlskaLk~----Lka~rRLLLTGTP 1159 (2239)
...-......+.+. +..+++|||||.+....-..-+.+.. +....+++|-|-|
T Consensus 116 ------------e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 116 ------------EQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred ------------HHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 00000111222233 34789999999986543333333333 2344568888877
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2239 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 5e-88 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 1e-43 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 2e-38 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 3e-36 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 8e-08 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 626 bits (1617), Expect = 0.0
Identities = 198/642 (30%), Positives = 308/642 (47%), Gaps = 96/642 (14%)
Query: 962 RFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLN 1021
F + + Y+ E++ QP ++ G LRD+Q+ G+ WM L++ N
Sbjct: 198 HFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDN 257
Query: 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081
GILADEMGLGKTVQ +A I++L+ + GPH+I+VP + + W KW P ++CI Y
Sbjct: 258 GILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY 317
Query: 1082 VGAKDQRSRL----------FSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1131
+G + R + +KFNVL+TTYE+I+ DR++L + W+++ +DEA
Sbjct: 318 MGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAH 377
Query: 1132 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1191
R+K+ ES L L+ ++ R+L+TGTPLQN++KEL +L+N L+P F +
Sbjct: 378 RLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD 437
Query: 1192 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1251
E++ IH LH+ ++PF+LRR +DVE SLP K +LR +
Sbjct: 438 ------------------EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVEL 479
Query: 1252 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-- 1309
S +Q+ Y I K + +L N EL+K NHP L
Sbjct: 480 SDVQTEYYKNIL-----------TKNYSALTAGAKGGH-FSLLNIMNELKKASNHPYLFD 527
Query: 1310 -----------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1358
+ + L+ S GK+ +LD++L +L++ GHRVL+FS M ++LDI
Sbjct: 528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDI 587
Query: 1359 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418
L +YL + + ++R+DGT R +I FNS DS+ F+FLLS RA G G+NL +ADTV
Sbjct: 588 LGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTV 647
Query: 1419 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDD 1478
+I+D D NP+ + QA+ARAHRIGQK V V
Sbjct: 648 VIFDSDWNPQADLQAMARAHRIGQKNHVMVY----------------------------- 678
Query: 1479 LAGKDRYI--GSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLH---- 1532
R + ++E + + K+ + +I+ G D ++ L
Sbjct: 679 -----RLVSKDTVEEEVL-ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKF 732
Query: 1533 --DEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFG 1572
++ ++ +ED V D + G
Sbjct: 733 GAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLG 774
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 546 bits (1410), Expect = e-174
Identities = 155/584 (26%), Positives = 256/584 (43%), Gaps = 94/584 (16%)
Query: 998 AGTLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
+ LR +Q G++++ N I+ADEMGLGKT+Q + LI L++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1053 H----LIIVPNAVLVNWKSELHKWLPS-VSCIYYVGAKDQRSR------LFSQVAALKFN 1101
+++ P++++ NW +E+ KWL V + G + Q +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161
+L+ +YE L K +I DE R+K+ ++ L+ QRR+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 1162 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221
NDL E +SL++ + + + F F P K +D D E+ + L
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ---KLQELIS 289
Query: 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1281
I+ ++RR + + LP K+ V+ C ++ +Q +Y + K V
Sbjct: 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVS- 348
Query: 1282 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------------LVKS 1325
+ L+K CNHP L Y + F +
Sbjct: 349 -----------SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQL 397
Query: 1326 CGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384
GK+ +LD IL + T +V+L S T+ LD+ E+ + R+ +Y R+DGT S++ R
Sbjct: 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAK 457
Query: 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444
+ FN+ S FIF+LS +A G GLNL A+ ++++DPD NP N+EQA+AR R GQK+
Sbjct: 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517
Query: 1445 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI--GSIEGLI--RNNIQQY 1500
IY R + G+IE I R Q +
Sbjct: 518 TCY-IY---------------------------------RLLSTGTIEEKILQR---QAH 540
Query: 1501 KIDMADEVINAGRFDQRT-THEERRMTLETLLHDEERYQETVHD 1543
K ++ V++ + +R + E R E +E+ +T HD
Sbjct: 541 KKALSSCVVDEEQDVERHFSLGELR---ELFSLNEKTLSDT-HD 580
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 365 bits (939), Expect = e-112
Identities = 127/461 (27%), Positives = 224/461 (48%), Gaps = 46/461 (9%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
+P ++A LR YQI G WM + LAD+MGLGKT+Q +A+ + + +
Sbjct: 30 EPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELT 87
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM 1111
P L+I P +VL NW+ EL K+ P + + + + +++++TTY ++
Sbjct: 88 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKI-------KLEDYDIILTTYAVLL 140
Query: 1112 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL 1171
D ++L +V+WKYI+IDEAQ +K+ ++ + + + + + R+ LTGTP++N + +LWS++
Sbjct: 141 RD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIM 199
Query: 1172 NLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231
L P + + F F+ P +K D+ E L I+ PF+LRR
Sbjct: 200 TFLNPGLLGSYSEFKSKFATPIKKG------DNMAKE---------ELKAIISPFILRRT 244
Query: 1232 VED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 1289
D + LP K+ + C ++ Q+A+Y +D +R + +
Sbjct: 245 KYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR-------KGMI 297
Query: 1290 YKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLF 1349
TL ++L++ +HP L + V+ GK+ I+ + G ++ +F
Sbjct: 298 LSTL----LKLKQIVDHPALLKG------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIF 347
Query: 1350 STMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408
+ + I+ ++ + G S ++R+ I F + + +LS++A G
Sbjct: 348 TQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSVKFIVLSVKAGGF 406
Query: 1409 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449
G+NL SA+ VI +D NP E+QA R +RIGQ R V V
Sbjct: 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 1e-74
Identities = 98/632 (15%), Positives = 201/632 (31%), Gaps = 51/632 (8%)
Query: 981 LAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040
+ R +L +Q+ + + +LADE+GLGKT++ ++
Sbjct: 135 YSSEQFRMPYSGLRGQRT-SLIPHQLNIAHDVGRRHA--PRVLLADEVGLGKTIEAGMIL 191
Query: 1041 AYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKF 1100
+ G LIIVP + W E+ + ++ + + ++ +
Sbjct: 192 HQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRFALFDDERYAEAQHDAYNPFDTE 249
Query: 1101 NVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV------LARDLDRYRCQR 1151
+++ + +F + L + +W +++DEA + E L
Sbjct: 250 QLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL-AEHVPG 308
Query: 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEK 1211
LLLT TP Q ++ ++ L LL P F + F + +
Sbjct: 309 VLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNY-----------CPVADAVA 357
Query: 1212 KVIIIHRL----HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW----IK 1263
++ ++L +L + + +E + + R + + +
Sbjct: 358 MLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVL 417
Query: 1264 ATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC--MELRKTCNHPLLNYPYFSDLSKDF 1321
T KR + + Y+T M RK+ + Y + ++F
Sbjct: 418 FRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEF 477
Query: 1322 LVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDG 1375
+ W D + L +VL+ LE+ L+ R+ +
Sbjct: 478 EGDN-ATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHE 536
Query: 1376 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1435
S+ +R+ A F D+ LL G N Q A ++++D NP EQ +
Sbjct: 537 GMSIIERDRAAAWFAEEDTGAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIG 595
Query: 1436 RAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 1495
R RIGQ ++++ + ++ G E S+ + N
Sbjct: 596 RLDRIGQAHDIQIHVP---YLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLIN 652
Query: 1496 NIQQYKI-DMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMI 1554
+ + D++I R + + LL E L E
Sbjct: 653 YLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQA---LAESIEEQ 709
Query: 1555 ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW 1586
+ + + + G ++ + +
Sbjct: 710 DDDTNLIAFAMNLFDIIGINQDDRGDNMIVLT 741
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-50
Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 21/229 (9%)
Query: 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1291
+ S L MS Q + D I + + D R + + + + +
Sbjct: 13 ATTLGISGNTSGDYWLPTTMSLYQKELTDQI-----VSLHYSDILRYFETSHYKEDVILE 67
Query: 1292 TLNNRCMELRKTCNHPLLNYPYFSDLSKDF------LVKSCGKLWILDRILIKLQRTGHR 1345
++ C+ HP L ++ S L ++ GK +L ++ +Q
Sbjct: 68 SMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETE 127
Query: 1346 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--SLEDRESAIVDFNSHDSDCFIFLLSI 1403
+ + +D+LE L ++ +R DG + S + S+ F
Sbjct: 128 TAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYP 187
Query: 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEE-QAVARAHRI--GQKREVKVI 1449
+ D +I D + ++ Q + + R G +R ++
Sbjct: 188 IKSKAR-----FDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIV 231
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 3e-49
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 20/233 (8%)
Query: 1218 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1277
H ++ R + LP K+ + C ++ Q+A+Y +D +
Sbjct: 5 HHHHHHSSGLVPRG-SHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIK 63
Query: 1278 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILI 1337
R + + TL ++L++ +HP L + V+ GK+ I+
Sbjct: 64 R-------KGMILSTL----LKLKQIVDHPALLKG------GEQSVRRSGKMIRTMEIIE 106
Query: 1338 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDC 1396
+ G ++ +F+ + I+ ++ + G S ++R+ I F + +
Sbjct: 107 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSV 165
Query: 1397 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449
+LS++A G G+NL SA+ VI +D NP E+QA R +RIGQ R V V
Sbjct: 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-33
Identities = 80/500 (16%), Positives = 167/500 (33%), Gaps = 46/500 (9%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
R YQ V + N ++ GLGKT+ M + Y + G G L++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG--GKVLMLAPT 61
Query: 1060 AVLVN-WKSELHKW--LPSVSCIYYVGAK--DQRSRLFSQVAALKFNVLVTTYEFIMYD- 1113
LV + LP + G K ++RS+ ++ + V+V T + I D
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDL 116
Query: 1114 -RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---LLLTGTPLQNDLKELWS 1169
++S D I+ DEA R + + + R + + LT +P K +
Sbjct: 117 LAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV 176
Query: 1170 LLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229
+ NL + + + D D + E + ++ L L+P
Sbjct: 177 INNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236
Query: 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 1289
+E +P K + ++ + ++ ++
Sbjct: 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSA 296
Query: 1290 YKTLNNRCMELRKTCN----HPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKL- 1339
+ + E K + + + + K+ L I+ +
Sbjct: 297 LRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQL 356
Query: 1340 -QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--------SLEDRESAIVDFN 1390
++ ++++F+ + + L + +R G S +++ + +F
Sbjct: 357 QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFA 416
Query: 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450
+ + L++ GL++ D V+ Y+P P+ Q R R R + ++
Sbjct: 417 RGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMA 473
Query: 1451 MEAVVDKI--SSHQKEDELR 1468
+ SS QKE ++
Sbjct: 474 KGTRDEAYYWSSRQKEKIMQ 493
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-24
Identities = 80/453 (17%), Positives = 148/453 (32%), Gaps = 97/453 (21%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
+LRDYQ L+ L + + G + G GKT MA I L P LI+VP
Sbjct: 92 ISLRDYQEKALERWLV--DKR--GCIVLPTGSGKTHVAMAAINEL------STPTLIVVP 141
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL 1117
L WK L + + K+ + + V+TY+ + KL
Sbjct: 142 TLALAEQWKERLGIFGEEYVGEFSGRIKELKP------------LTVSTYDSAYVNAEKL 189
Query: 1118 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPE 1177
+ +I DE + + RL LT T + D + L ++ +
Sbjct: 190 GN-RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATFEREDGRH-EILKEVVGGK 245
Query: 1178 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 1237
VF + K + + + +I P RVE
Sbjct: 246 VF-----------------------ELFPDSLAGKHLAKYTIKRIFVPLAEDERVE---- 278
Query: 1238 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297
+ +++A G ED + V + + R
Sbjct: 279 -------------YEKREKVYKQFLRARGITLRRAEDFNKIVMASGY---------DERA 316
Query: 1298 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1357
E + ++ S K+ L IL + ++++F T+ +
Sbjct: 317 YEALRAWEE-----------ARRIAFNSKNKIRKLREILER--HRKDKIIIF---TRHNE 360
Query: 1358 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1417
++ + + I TS E+RE + F + F ++S + G+++ A+
Sbjct: 361 LVYRIS--KVFLIPAITHRTSREEREEILEGFRTGR---FRAIVSSQVLDEGIDVPDANV 415
Query: 1418 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450
+I + + Q + R R + ++ V+Y
Sbjct: 416 GVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 7e-21
Identities = 122/709 (17%), Positives = 208/709 (29%), Gaps = 237/709 (33%)
Query: 841 GVAKYHER-ILREFSK--RKDDDRNKRMEALKNNDV---ERYREMLLEQQTSIPGDAAER 894
G +Y + IL F + D + K+ + E +++ DA
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDHIIMS------KDAVSG 63
Query: 895 -YAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA--ANAAAAAARLQGLSEEEVRSAAA 951
+ + L++ EE + K VEE N + ++ E R +
Sbjct: 64 TLRLFWTLLSKQEEMVQKF------------VEEVLRINYKFLMSPIK----TEQRQPSM 107
Query: 952 CAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQW 1011
+ R+R D KY V R L+ LR Q
Sbjct: 108 MTRMYIEQRDRLY-----NDNQVFAKYN---------VSRLQPYLK---LR-------QA 143
Query: 1012 MLSLYNNKLNGILADEM-GLGKTVQVMALIAYL-------MEFK------GNYG-PHLII 1056
+L L K +L D + G GKT +AL L M+FK N P ++
Sbjct: 144 LLELRPAK--NVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 1057 VP-NAVLVNWKSELHKWLPSVSCIYYVG---AKDQRSRLFSQ---VAAL----------- 1098
+L S + + + RL L
Sbjct: 200 EMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 1099 --KFN----VLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQR-MKDRES--VLARDLD- 1145
FN +L+TT + LS +I +D + E +L + LD
Sbjct: 259 WNAFNLSCKILLTTR-----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1146 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1205
R + R +LT P S++ + ++G D+
Sbjct: 314 RPQDLPREVLTTNPR------RLSIIAESI-------------------RDGLATW--DN 346
Query: 1206 W--LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSI---VLRCRMSAIQSAIYD 1260
W + +K II +LEP R+ + + PP I +L ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILL---------SLI- 395
Query: 1261 WIKATGTLRVDPED-----EKRR-VQKNP---------IY-----QAKVYKTLNNRCME- 1299
W + D K V+K P IY + + L+ ++
Sbjct: 396 WFDVI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1300 ---LRKTCNHPLL-----NYPYF-----------SDLSKDFLVKSCGKLWILD-RIL-IK 1338
+ + L+ Y Y + F ++ LD R L K
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMVFLDFRFLEQK 506
Query: 1339 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI-DGTTSLEDRESAIVDF-NSHDSDC 1396
++ ++ L L+ Y + I D E +AI+DF + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENL 559
Query: 1397 FI--FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1443
+ +R A L + D I + AH+ Q+
Sbjct: 560 ICSKYTDLLRIA-----LMAEDEAIFEE--------------AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 3e-14
Identities = 99/700 (14%), Positives = 211/700 (30%), Gaps = 214/700 (30%)
Query: 669 KYHGPLFDF-PFFTRKHD---------SVGSTA----MVNSSNNLTLAYDVKDLLSEEGL 714
+Y L F F D S+ S ++ S + ++ + L +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 715 EVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQ 774
E++QK E L+ L ++ ++ +P ++ R+ IEQ+ RL ++
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--------DRLYNDN----- 123
Query: 775 EIMAMPDRQYRK-FVRLCERQRVELMRQVQTSQKAMRE-------------KQ------L 814
+ + K V R++ +++ + +R K
Sbjct: 124 -------QVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 815 KSISQWRKKLLEAHWAIRDARTARNRGVAK-----YHERILREFSKRKDDDRN--KRMEA 867
S K + W + V + + +I ++ R D N R+ +
Sbjct: 172 LSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHS 229
Query: 868 LKNNDV-----ERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQ 922
++ + Y LL + + ++F L KI
Sbjct: 230 IQAELRRLLKSKPYENCLL-----VLLNVQNA-KAWNAF---------NLSCKILLTTRF 274
Query: 923 QEVEEAANAAAAAA-----RLQGLSEEEVRSAAACAGEEVMIRNRFLEMNA---PRDGSS 974
++V + +AA L+ +EV+S ++L+ PR+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----------KYLDCRPQDLPRE--- 321
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
N R + S++ A ++RD W + +KL I+ E L
Sbjct: 322 -------VLTTNPRRL---SII-AESIRDGLATWDNW-KHVNCDKLTTII--ESSL---- 363
Query: 1035 QVMALIAYL--MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS-VSCIYYVGAKDQRSRL 1091
L E++ + L + P + +P+ + + + +
Sbjct: 364 ------NVLEPAEYRKMF-DRLSVFPPSA----------HIPTILLSLIWFDVIKSDVMV 406
Query: 1092 FSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKY-------IIIDEAQRMKDRESVLARDL 1144
++ S + K K I ++ ++++ ++ +
Sbjct: 407 VVNK---------------LHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 1145 DRYRCQRRLLLTG-TPLQND----------LK-----ELWSLLNLLLPEVFDNRKAFHDW 1188
D Y + P D LK E +L ++ D R +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFR-----F 502
Query: 1189 FSQPFQKEGPTHNADDDW------LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 1242
Q + + NA L+ K I + E R V + LP
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYE-----RLVNAILDFLPKI 555
Query: 1243 VSIVLRCRMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQK 1281
++ + + + + A+ + E+ ++VQ+
Sbjct: 556 EENLICSKYTDLLRIALMA--EDEAIF----EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 1e-13
Identities = 92/637 (14%), Positives = 192/637 (30%), Gaps = 202/637 (31%)
Query: 1020 LNGILADE-----MGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL---HK 1071
IL+ E + V + + + K V + L +K
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYK 92
Query: 1072 WL----------PSVSCIYYVGAKDQRSRLFSQVAAL-KFNVLVTTYEFIMYDRSKLSKV 1120
+L PS+ Y+ +QR RL++ K+NV + + + R L ++
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLEL 147
Query: 1121 -DWKYIIIDEAQRM----KDRESVLARD-LDRYRCQRRL------LLTG---TPLQNDLK 1165
K ++I + K + +A D Y+ Q ++ L +P + L+
Sbjct: 148 RPAKNVLI---DGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLE 200
Query: 1166 ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ---- 1221
L LL + P +W S+ ++ E + ++ + ++
Sbjct: 201 MLQKLLYQIDP----------NWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLL 248
Query: 1222 ILEPFMLRRRVEDVEGSLPPKVSIV----LRCRMSAI--QSAIYDWIKATGTLRVDPEDE 1275
+L V++ + L C++ + D++ A T + +
Sbjct: 249 VL------LNVQNAK--------AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 1276 KRRVQKNPIYQAKVY--KTLNNRCMEL-RKTCN-HPLLNYPYFSDLSKDFLVKSCGKLWI 1331
+ + + K K L+ R +L R+ +P LS
Sbjct: 295 SMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRR-------LS------------- 331
Query: 1332 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT--TSLEDRESAIVDF 1389
+ + + D L + W+ + ++ +SL E A ++
Sbjct: 332 ----------------IIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EY 371
Query: 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449
+F S ++ + + D + V + H+
Sbjct: 372 RKMFDRLSVFPPSA-------HI-PTILLSLIWFDVIKSDVMVVVNKLHK---------- 413
Query: 1450 YMEAVVDKISSHQKEDELRSGGTV---DLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1506
++V+K KE T+ + +L K ++ R+ + Y I
Sbjct: 414 --YSLVEK---QPKE------STISIPSIYLELKVKLENEYALH---RSIVDHYNIPKT- 458
Query: 1507 EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQ 1566
FD L D+ Y H L+ + + LF
Sbjct: 459 -------FDSDD--------LIPPYLDQYFYSHIGH---HLKN-----IEHPERMTLFRM 495
Query: 1567 MDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 1603
+ +F ++E+ R+D S + T+ L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGS---ILNTLQQLKF 529
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 115/770 (14%), Positives = 214/770 (27%), Gaps = 276/770 (35%)
Query: 1367 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPN 1426
Q Y+ I L E A VD + DC ++ L + I
Sbjct: 15 QYQYKDI-----LSVFEDAFVD----NFDCKDVQDMPKSI-----LSKEEIDHII----- 55
Query: 1427 PKNEEQAVARAHRI------GQKREVKVIYMEAVVDK-----ISSHQKEDELRSGGTVDL 1475
+ AV+ R+ Q+ V+ ++E V+ +S + E S T
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMT--- 109
Query: 1476 EDDLAGKDRYIGSIEGLIRNN--IQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1533
YI + L +N +Y N R + + R L L
Sbjct: 110 -------RMYIEQRDRLYNDNQVFAKY---------NVSRLQP---YLKLRQALLEL--R 148
Query: 1534 EERYQETVHDVP-----SL-QEVNRMIARSEDEVELFDQMDEEFG--WIEEMTRYDQVPK 1585
+ + V + +V S D F W+ + +
Sbjct: 149 PAKNV-LIDGVLGSGKTWVALDV----CLSYKVQCKMD-----FKIFWLN-LKNCNSP-- 195
Query: 1586 WLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPN-------- 1637
+ + + + + SNI + I+ E +R K K Y N
Sbjct: 196 --ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1638 --------------------YKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYS 1677
+K+V D + + + + + DE
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--------THISLDHHSMT-LTPDEVK 304
Query: 1678 GAVGAPLSNKDQS--EEDGPVCEG--------GYDYLRPSENTRNN--HVVEEAGSSGSS 1725
+ L + Q E V + +R T +N HV
Sbjct: 305 SLLLKYLDCRPQDLPRE---VLTTNPRRLSIIA-ESIRDGLATWDNWKHV---------- 350
Query: 1726 SNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAV-SGDSHMDHQQ- 1781
N +LT I+ SL+ LE P E + ++V +H+
Sbjct: 351 -NCDKLTTIIE-------SSLNVLE----------PAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 1782 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQM 1841
S W D + + V+ K+ + + ++P+E + + + S+ +
Sbjct: 393 SLIWF-DVIKSDVMVVVN-KLHKYSLVE-------KQPKESTIS---IP----SI---YL 433
Query: 1842 DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNC 1901
+ K +L + + H R I + + + +
Sbjct: 434 ELK--VKLENEYAL--H-----------------------RSIVDHYNIPKTFDSD--DL 464
Query: 1902 MPGHTEDA------ADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1955
+P + D H K I + + F D L+++I
Sbjct: 465 IPPY-LDQYFYSHIGHHLK-----NIEHPERMTLFRMVFLD---------FRFLEQKIRH 509
Query: 1956 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRK----IDQRVDRLEYNGVMELVSDV-Q 2010
+ W N + L+ I + E LV+ +
Sbjct: 510 DST--------AW------NASGSILNTLQQLKFYKPYICDNDPKYE-----RLVNAILD 550
Query: 2011 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF-PDTD--FREARSAL 2057
F+ K + + S+ + DLL+IA + + F EA +
Sbjct: 551 FLPKIE------ENLICSK-------YTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-04
Identities = 66/556 (11%), Positives = 148/556 (26%), Gaps = 190/556 (34%)
Query: 1549 EVNRMIARSEDEVELFDQ---MDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKP 1605
E + +D + +F+ + + +++M + + S +E++ I +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SI-----LSKEEIDHIIMSKDAVS 62
Query: 1606 SKNILFGSNIGVDSGEIETERKRGPK----GKKYPNYKEVDDEIGEYSEASSDERNGYPV 1661
LF + + ++++ + NYK + I S Y
Sbjct: 63 GTLRLFWT--------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 1662 QEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVC---------EGGYDYLRPSENTRN 1712
Q + L N +Q V + + LRP++N
Sbjct: 115 QRD------------------RLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV-- 153
Query: 1713 NHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVS 1772
+++ SG + ++ + +M ++
Sbjct: 154 --LIDGVLGSGKTW-------------------VALDVCLSYKVQCKMDFKI-------- 184
Query: 1773 GDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRG 1832
W + ++ E VL ++ +K ++ P T R + S +H
Sbjct: 185 -----------FWLNLKNCNSPETVL--EMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSI 230
Query: 1833 DSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL---RHDQSEPSSKSRRNLPSRKIANA-- 1887
+ L Y N L N+ + K NA
Sbjct: 231 QAELRRLLKSKPYE---------------NCLLVLL------------NVQNAKAWNAFN 263
Query: 1888 PKSRASLKTGRLNCMPGHTEDA--ADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNV 1945
+ L T T D + I+ S + + + +
Sbjct: 264 LSCK-ILLT---------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1946 -ISKLQRRIEKEGHQIVPLLTDL--------------WKRIETSGYVSGAGNNILD--LR 1988
L R E P + WK + I++ L
Sbjct: 314 RPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-----TTIIESSLN 364
Query: 1989 KIDQRVDRLEYN-------------GVMELV------SDVQFMLKGAMQFYGFS---HEV 2026
++ R ++ ++ L+ SDV ++ + + +S +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEKQP 421
Query: 2027 RSEARKVHDLFFDLLK 2042
+ + ++ +L
Sbjct: 422 KESTISIPSIYLELKV 437
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 26/169 (15%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
+LRDYQ L+ L + G + G GKT MA I L P LI+VP
Sbjct: 92 ISLRDYQEKALERWLV--DK--RGCIVLPTGSGKTHVAMAAINELST------PTLIVVP 141
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL 1117
L WK L + + K+ + + V+TY+ Y ++
Sbjct: 142 TLALAEQWKERLGIFGEEYVGEFSGRIKELK------------PLTVSTYD-SAYVNAEK 188
Query: 1118 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKE 1166
+ +I DE + + RL LT T + D +
Sbjct: 189 LGNRFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATFEREDGRH 235
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 2e-10
Identities = 87/625 (13%), Positives = 183/625 (29%), Gaps = 71/625 (11%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKT-VQVMALIAYLMEFKGNYGPH-LIIV 1057
R+YQ+ + N I+ G GKT V ++ +L +F +
Sbjct: 13 KPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 68
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK 1116
+ KS K+ + + + ++++ T + ++ + K
Sbjct: 69 NQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 128
Query: 1117 ---LSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRCQRR------LLLTGTPLQNDL 1164
S + +I DE + ++ LD+ + LT + D
Sbjct: 129 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 188
Query: 1165 KELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224
K L+ + ++ + A + +E + + I + I+
Sbjct: 189 KTTDEALDYIC-KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 247
Query: 1225 PFM--LRRRVEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQK 1281
M + + L I R + + I KA ++ +DE+ R+ K
Sbjct: 248 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 307
Query: 1282 NPIYQAKVYKTLNNRCMELRKTCNHPLLNY--------------PYFSDLSKDFLVKSCG 1327
+ N+ + L+Y DL++ F K
Sbjct: 308 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 367
Query: 1328 -------------KLWILDRILIK------LQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368
KL L IL + T V + + L + +E + L
Sbjct: 368 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 427
Query: 1369 VYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420
+ G L ++ + F S L++ A G+++ + VI+
Sbjct: 428 KPGILTGRGKTNQNTGMTLPAQKCILDAF--KASGDHNILIATSVADEGIDIAQCNLVIL 485
Query: 1421 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1480
Y+ N Q R G K + + + + KE + D L
Sbjct: 486 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN-----DSILRLQ 540
Query: 1481 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1540
D + + L +++ D ++ + + + L D ++
Sbjct: 541 TWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDC 600
Query: 1541 VHDVPSLQEVNRMIARSEDEVELFD 1565
+ V ++R + + F
Sbjct: 601 HYTVLGDAFKECFVSRPHPKPKQFS 625
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 65.0 bits (157), Expect = 2e-10
Identities = 86/648 (13%), Positives = 178/648 (27%), Gaps = 84/648 (12%)
Query: 926 EEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAV 985
A+ ++ + ++V S A E+ + + A D + S A +
Sbjct: 178 TTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGI 237
Query: 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
+ + R YQI Q ++ N ++ G GKT + + + +
Sbjct: 238 GKPPPVYETK----KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQ 289
Query: 1046 --FKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNV 1102
G + + + K+ + + S + + ++
Sbjct: 290 NMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDI 349
Query: 1103 LVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ--------- 1150
+V T + ++ S + +I DE + RY Q
Sbjct: 350 IVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSASQLP 408
Query: 1151 RRLLLTGTPL----QNDLKELWSLLNLL-------LPEVFDNRKAFHDWFSQPFQKEGPT 1199
+ L LT + +N + + + +L + V +N + + ++P
Sbjct: 409 QILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 468
Query: 1200 HNADDDWLETEKKVI---IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ- 1255
+ + + I L + + G+ + IV+ R +
Sbjct: 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQ 528
Query: 1256 -------SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRK 1302
S I + D + I A Y N EL +
Sbjct: 529 LEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQ 588
Query: 1303 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLL 1356
KL L IL R LLF+ ++ L
Sbjct: 589 HLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALK 648
Query: 1357 DILEEYLQWRQLVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408
+EE + + G L ++ + F S L++ A
Sbjct: 649 KCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF--KTSKDNRLLIATSVADE 706
Query: 1409 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG----------------QKREVKVIYME 1452
G+++ + V++Y+ N Q R G + K M
Sbjct: 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMMN 766
Query: 1453 AVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1500
V+KI +E + + +++ + R ++
Sbjct: 767 KAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLL 814
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 61.9 bits (149), Expect = 2e-09
Identities = 63/504 (12%), Positives = 132/504 (26%), Gaps = 70/504 (13%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIV 1057
R YQI Q ++ N ++ G GKT + + + + G + +
Sbjct: 248 KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK 1116
+ K+ + + S + + +++V T + ++
Sbjct: 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
Query: 1117 ---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---------LLLTGTPLQNDL 1164
S + +I DE + RY Q+ L LT + +
Sbjct: 364 GTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422
Query: 1165 KELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224
K + + + + + +E + K I + I+
Sbjct: 423 KNIEETIEHIC-SLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481
Query: 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI 1284
M E + ++ ++ + WI T + E + +
Sbjct: 482 NLM--SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRIC 539
Query: 1285 YQAKVYKTLNNRC-------------------------------MELRKTCNHPLLNYPY 1313
+ + EL +
Sbjct: 540 RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEP 599
Query: 1314 FSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLLDILEEYLQWRQ 1367
KL L IL R LLF+ ++ L +EE
Sbjct: 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNY 659
Query: 1368 LVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1419
+ + G L ++ + F + + + S+ A G+++ + V+
Sbjct: 660 IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV--ADEGIDIVQCNLVV 717
Query: 1420 IYDPDPNPKNEEQAVARAHRIGQK 1443
+Y+ N Q R G K
Sbjct: 718 LYEYSGNVTKMIQVRGRGRAAGSK 741
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 3e-08
Identities = 70/509 (13%), Positives = 143/509 (28%), Gaps = 68/509 (13%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIV 1057
R YQI Q ++ N ++ G GKT + + + + G + +
Sbjct: 7 KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK 1116
+ K+ + + S + + +++V T + ++
Sbjct: 63 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
Query: 1117 ---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---------LLLTGTPLQNDL 1164
S + +I DE + RY Q+ L LT + +
Sbjct: 123 GTLTSLSIFTLMIFDECHNT-TGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 181
Query: 1165 KE----LWSLLNLL-------LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 1213
K + + +L + V +N + + ++P +
Sbjct: 182 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241
Query: 1214 II---IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI--------QSAIYDWI 1262
++ + I L + + G+ + IV+ R + +S I +
Sbjct: 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 301
Query: 1263 KATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRKTCNHPLLNYPYFSD 1316
D + I A Y N EL +
Sbjct: 302 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELI 361
Query: 1317 LSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLLDILEEYLQWRQLVY 1370
KL L IL R LLF+ ++ L +EE +
Sbjct: 362 ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 421
Query: 1371 RRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 1422
+ G L ++ + F + + + S+ A G+++ + V++Y+
Sbjct: 422 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV--ADEGIDIVQCNLVVLYE 479
Query: 1423 PDPNPKNEEQAVARAHRIGQKREVKVIYM 1451
N Q R + K I +
Sbjct: 480 YSGNVTKMIQVRGRG----RAAGSKCILV 504
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 4e-08
Identities = 60/512 (11%), Positives = 145/512 (28%), Gaps = 72/512 (14%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII--V 1057
R+YQ+ N I+ G GKT + + + ++ ++
Sbjct: 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFA 59
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK 1116
+ + ++ + + + Q ++++ T + ++ + +
Sbjct: 60 NQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN 119
Query: 1117 ---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ----------RRLLLTGTPLQND 1163
S + +I DE + + + RY + + LT + D
Sbjct: 120 GAIPSLSVFTLMIFDECHNT-SKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGD 178
Query: 1164 ----------LKELWSLLNL-LLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1212
+ +L + L+ ++ V DN +P + + + +
Sbjct: 179 AKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238
Query: 1213 VI---IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV--LRCRMSAIQSAI-------YD 1260
+ + E ++++ E + + S Q A
Sbjct: 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCK 298
Query: 1261 WIKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRKTCNHPLLNYPYF 1314
+ + D + + A Y E +
Sbjct: 299 ALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEE 358
Query: 1315 SDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFSTMTKLLDILEEYLQWR------ 1366
+ KL L +L + + + +LF L+D L+++++
Sbjct: 359 LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL 418
Query: 1367 -------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1419
+ R G T + S D++ L++ A G+++ + VI
Sbjct: 419 KPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI---LIATSVADEGIDIAECNLVI 475
Query: 1420 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451
+Y+ N Q R + R+ K +
Sbjct: 476 LYEYVGNVIKMIQTRGRG----RARDSKCFLL 503
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 3e-06
Identities = 21/115 (18%), Positives = 46/115 (40%)
Query: 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEY 1999
++ ++ + +LT L TS + LDL + +++D+ Y
Sbjct: 60 CTERHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNY 119
Query: 2000 NGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 2054
V+E D+ +++ A+ G E++ V F ++ FP +++R
Sbjct: 120 TSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 5e-06
Identities = 19/199 (9%), Positives = 57/199 (28%), Gaps = 10/199 (5%)
Query: 1272 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWI 1331
P + ++ + + K+ E Y ++ + +
Sbjct: 282 PVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKG----KTYQEEI--KIITGLSKRNKW 335
Query: 1332 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391
+ ++ IKL + + + + ++ + G E R +
Sbjct: 336 IAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN 395
Query: 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451
I + S G+++++ V++ + Q + R R + + ++
Sbjct: 396 --GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW- 452
Query: 1452 EAVVDKISSHQKEDELRSG 1470
++D K +
Sbjct: 453 -DLIDDAGVKPKSANTKKK 470
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-05
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 768 EVDQQQQEIMAMPD--RQYRKFVRLCERQRVEL-MRQVQTSQK--AMREKQLKSISQWRK 822
+ D+ QE P+ R++R E QR L + REK K + +W +
Sbjct: 76 QADRLTQE----PESIRKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
Query: 823 KLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDD 860
+ E + NR K F ++ D D
Sbjct: 126 RQSEQ----VEKNKINNRIADK-------AFYQQPDAD 152
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 1333 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392
+L LQ+T VL+F+ +D + EYL + + I G E+R AI F
Sbjct: 44 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 103
Query: 1393 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441
D L++ A +GL+ + VI YD P+ E V HRIG
Sbjct: 104 KKD---VLVATDVASKGLDFPAIQHVINYD---MPEEIENYV---HRIG 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2239 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.98 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.97 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.97 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.97 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.97 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.97 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.96 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.96 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.95 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.95 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.95 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.95 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.94 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.93 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.92 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.92 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.9 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.9 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.9 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.9 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.9 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.89 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.89 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.89 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.89 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.88 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.88 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.88 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.88 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.87 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.87 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.86 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.85 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.84 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.84 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.83 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.83 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.81 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.81 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.8 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.8 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.8 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.8 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.78 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.78 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.78 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.77 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.77 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.77 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.77 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.77 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.77 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.77 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.76 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.76 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.76 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.75 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.75 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.75 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.75 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.74 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.74 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.74 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.74 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.73 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.73 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.72 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.71 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.71 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.71 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.71 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.71 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.71 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.7 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.7 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.7 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.69 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.69 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.69 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.68 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.67 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.67 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.66 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.65 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.65 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.64 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.63 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.63 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.63 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.63 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.62 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.62 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.61 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.4 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.59 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.59 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.59 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.59 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.58 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.57 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.55 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.55 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.55 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.54 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.5 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.46 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.45 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.44 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.32 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.3 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.27 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.23 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.91 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.82 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.74 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.66 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 98.63 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 98.55 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.54 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 98.53 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.5 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.49 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.46 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 98.35 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 98.03 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 97.97 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 97.97 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 97.97 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 97.95 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 97.92 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 97.89 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 97.89 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 97.87 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 97.86 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 97.84 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 97.82 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 97.78 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 97.77 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 97.77 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 97.76 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 97.75 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 97.73 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 97.52 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 97.5 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 97.36 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.32 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 97.21 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 97.19 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.04 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.93 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.81 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.77 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.74 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.44 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.89 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.3 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.13 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 94.75 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.46 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.33 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.43 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 93.32 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 93.03 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.94 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.83 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.61 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 91.31 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.23 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 90.65 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 90.19 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 89.82 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 89.79 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 89.54 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.52 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 89.43 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 89.38 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.1 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 88.63 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 88.51 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 88.27 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 88.27 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 88.24 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 87.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 87.13 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 86.83 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 86.71 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 85.76 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 84.89 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 84.55 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 84.06 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 83.88 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 83.83 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 83.74 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 83.53 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 83.26 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 82.11 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 81.95 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 81.29 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 81.02 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 80.53 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 80.48 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 80.06 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-75 Score=766.70 Aligned_cols=466 Identities=40% Similarity=0.679 Sum_probs=395.4
Q ss_pred hhccCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000101 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2239)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~ 1067 (2239)
.+..+|..+.+++|||||++||+||+.++.++.||||||+||||||+++|+++.+++......+|+|||||.+|+.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 45567888888899999999999999999999999999999999999999999999887888899999999999999999
Q ss_pred HHHHHCCCCceEEEecchhhHHHHHHH----------HhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh
Q 000101 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQ----------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1137 (2239)
Q Consensus 1068 Ef~KwaPslkvvvy~Gskd~Rk~l~~~----------i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~ 1137 (2239)
||.+|+|.+.+++|+|....+..+... .....++|+||||+++.++...|..+.|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 999999999999999998877655432 2345789999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1138 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1138 SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|.-.. . . ......+.
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~-----~-------~~~~~~~~ 445 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q-----D-------EEQEEYIH 445 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C-----T-------THHHHHHH
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c-----c-------hhHHHHHH
Confidence 9999999999999999999999999999999999999999998766553111 0 0 11223577
Q ss_pred HHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niI 1297 (2239)
+|+.++.||++||++.+|...||++.+.+++|.|++.|+.+|+.+.......+.... ......+++.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~~~l~~l 513 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHFSLLNIM 513 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHH
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchhhHHHHH
Confidence 899999999999999999999999999999999999999999998775433322111 11223578899
Q ss_pred HHHHHHcCCCCCCCCCcccc-------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHH
Q 000101 1298 MELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1364 (2239)
Q Consensus 1298 mqLRKiCnHP~L~~p~~~~~-------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~ 1364 (2239)
+.||++|+||+++....... ....++..++|+.+|.++|..+...|+||||||+|+.++++|+++|.
T Consensus 514 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 514 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999875432110 11345678999999999999999999999999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1365 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1365 ~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
.+|+.|++|||+++.++|.++++.|+++++.++|||+||++||+||||+.||+||+||++|||..++||+||+||+||++
T Consensus 594 ~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 594 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccccCc
Q 000101 1445 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1516 (2239)
Q Consensus 1445 eV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGkFD~ 1516 (2239)
+|.||+|++ .+|||+.|+++ +..|+.++..|++.|.++.
T Consensus 674 ~V~Vyrlv~--------------------------------~~TiEe~i~~~-~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 674 HVMVYRLVS--------------------------------KDTVEEEVLER-ARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHTTSCC----------
T ss_pred eEEEEEEec--------------------------------CCCHHHHHHHH-HHHHHHHHHHHHccCcccc
Confidence 999999976 37999999985 5789999999998887754
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-71 Score=707.77 Aligned_cols=466 Identities=30% Similarity=0.487 Sum_probs=387.6
Q ss_pred CCChHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
.+|||||++||.||+..+ .++.+|||||+||+|||+++|+++..++.... ..+++|||||.+++.||..||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 489999999999999876 45678999999999999999999999876433 235689999999999999999
Q ss_pred HHHCCC-CceEEEec-chhhHHHHHHHHhh-----cCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1070 HKWLPS-VSCIYYVG-AKDQRSRLFSQVAA-----LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1070 ~KwaPs-lkvvvy~G-skd~Rk~l~~~i~~-----~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
.+|++. +.++.+.+ ....+......... ..++|+||||+++..+...|....|++|||||||++||..++.++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~ 213 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHH
Confidence 999975 55555554 44333332222211 257899999999999988999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
++..+.+.+||+|||||++|++.|||+||+||.|++|++...|.++|..|+........... ........+.+|+.+
T Consensus 214 al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~---~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK---DRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH---HHHHHHHHHHHHHHH
T ss_pred HHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH---HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988765543333222 222334457789999
Q ss_pred hhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000101 1223 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1302 (2239)
Q Consensus 1223 LrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRK 1302 (2239)
+.||++||++.++...||++.+.+++|+|++.|+.+|+.+.......... ... ......+..++.||+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g-----~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTG-----KISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTT-----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcC-----ccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886643221100 000 011345667889999
Q ss_pred HcCCCCCCCCCc-------cc--------c-chhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEEccHHHHHHHHHHHHH
Q 000101 1303 TCNHPLLNYPYF-------SD--------L-SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQW 1365 (2239)
Q Consensus 1303 iCnHP~L~~p~~-------~~--------~-s~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQ~t~~LDILed~L~~ 1365 (2239)
+|+||.++.... .. . ........++|+.+|+.+|..+.. .++|+||||+++.++++|+.+|..
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 999998753210 00 0 011223568999999999998864 589999999999999999999999
Q ss_pred cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcce
Q 000101 1366 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1366 rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
.|+.|++|||+++.++|.+++++|++++...++||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999998777778999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEehhhhhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1446 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1446 V~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
|.||+|++ .++||+.|++. +..|..+.+.|++.+
T Consensus 519 v~v~~lv~--------------------------------~~tiEe~i~~~-~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 519 CYIYRLLS--------------------------------TGTIEEKILQR-QAHKKALSSCVVDEE 552 (644)
T ss_dssp EEEEEEEE--------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCS
T ss_pred eEEEEEEE--------------------------------CCCHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 99999976 37999999984 577888887777654
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=636.81 Aligned_cols=444 Identities=29% Similarity=0.515 Sum_probs=377.3
Q ss_pred CccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000101 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2239)
Q Consensus 993 Ps~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~Kw 1072 (2239)
|..+. .+|+|||.+|+.||..++..+.+|||||+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 55554 58999999999999998888899999999999999999999988874 45567999999999999999999999
Q ss_pred CCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceE
Q 000101 1073 LPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1152 (2239)
Q Consensus 1073 aPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rR 1152 (2239)
+|.+.+.+|.|.... .....++|+||||+++.++.. +....|++|||||||+++|..+++++++..+.+.++
T Consensus 109 ~~~~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~ 180 (500)
T 1z63_A 109 APHLRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR 180 (500)
T ss_dssp CTTSCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEE
T ss_pred CCCceEEEEecCchh-------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcE
Confidence 999999999887532 234578999999999987755 677899999999999999999999999999999999
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.|+++||++
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~k 245 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRRTK 245 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECCCT
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHHHHHhhHeeeecc
Confidence 999999999999999999999999999999999999987765421 11345788999999999999
Q ss_pred hh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1233 ED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1233 kD--VekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
.+ +...||++.+.+++|+|++.|+.+|+.+.......+... ........+...++.||++|+||.+.
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~lr~~~~~p~l~ 314 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----------TGIKRKGMILSTLLKLKQIVDHPALL 314 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTC-----------CTHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhh-----------hcccchHHHHHHHHHHHHHhCCHHHh
Confidence 76 677999999999999999999999998765432211110 00112345677889999999999875
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHH
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~F 1389 (2239)
... ...+..++|+..|.++|.++...++|+||||+++.+++.|.++|... |+.+.++||+++.++|.+++++|
T Consensus 315 ~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F 388 (500)
T 1z63_A 315 KGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 388 (500)
T ss_dssp HCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHH
T ss_pred cCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHh
Confidence 321 22345688999999999999999999999999999999999999986 99999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhcc
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRS 1469 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls 1469 (2239)
+++ ..+.+||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 389 ~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~---------------- 451 (500)
T 1z63_A 389 QNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS---------------- 451 (500)
T ss_dssp HHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE----------------
T ss_pred cCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe----------------
Confidence 974 346688999999999999999999999999999999999999999999999999999976
Q ss_pred CCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1470 GGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1470 ~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
.++||+.|++. ...|..+.+.++..+
T Consensus 452 ----------------~~tiee~i~~~-~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 ----------------VGTLEEKIDQL-LAFKRSLFKDIISSG 477 (500)
T ss_dssp ----------------TTSHHHHTHHH-HTTCSSSSSSGGGST
T ss_pred ----------------CCCHHHHHHHH-HHHHHHHHHHHhhcC
Confidence 26889998874 567777777777654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=503.48 Aligned_cols=430 Identities=18% Similarity=0.216 Sum_probs=318.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCce
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkv 1078 (2239)
.+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||++|+.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 48999999999999873 3567899999999999999999988875 566679999999999999999999998 6777
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh---hhcccCCceEEEecccccccChhhH---HHHHhhcc--ccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY--RCQ 1150 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrIKN~~SK---lskaLk~L--ka~ 1150 (2239)
.+|.|................++|+||||+.+.++. ..+....|++|||||||+++|..+. .++.+..+ .+.
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 777765433211111122346799999999998763 4466779999999999999987654 47777777 677
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcc---------cCCC---------CC------------
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGP---------TH------------ 1200 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~---------~~g~---------~~------------ 1200 (2239)
++|+|||||++|++.|+|++++||.|..|++...|..++..... .... ..
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 89999999999999999999999999999999988876432110 0000 00
Q ss_pred ---CCChhhHHHHHHHHHHHHHHHhh-----hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCc
Q 000101 1201 ---NADDDWLETEKKVIIIHRLHQIL-----EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1272 (2239)
Q Consensus 1201 ---~~e~d~l~~ee~~lii~RLhklL-----rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~ 1272 (2239)
....... .. ....+..++ ..+++|+.+..+ ..+|.+....+.+.+++....+|.............
T Consensus 388 ~~~~~~~~~~--~~---~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 388 AANSDSEDAQ--SA---RQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp GTCCCSSCST--TT---HHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred cccchhhhhH--HH---HHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 00 011122222 234555555555 478999999999999999999987543321111100
Q ss_pred hhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEcc
Q 000101 1273 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTM 1352 (2239)
Q Consensus 1273 ~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~ 1352 (2239)
.. ...|.+|...+..+.. .....+..+.|+..|.++|.. ..+.|+||||++
T Consensus 462 ~~--------------------------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~ 512 (968)
T 3dmq_A 462 DR--------------------------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAK 512 (968)
T ss_dssp GG--------------------------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSS
T ss_pred HH--------------------------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCc
Confidence 00 0011223222221111 111244567899999999987 568999999999
Q ss_pred HHHHHHHHHHHHH-cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHH
Q 000101 1353 TKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1431 (2239)
Q Consensus 1353 t~~LDILed~L~~-rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dl 1431 (2239)
+.+++.|..+|.. .|+.+..+||+++..+|.++++.|+++++.+ .|||+|+++++||||+.|++||+||+||||..+.
T Consensus 513 ~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~ 591 (968)
T 3dmq_A 513 AATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLE 591 (968)
T ss_dssp THHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHH
Confidence 9999999999995 5999999999999999999999999754333 4688999999999999999999999999999999
Q ss_pred HhhhhhcccCCcceEEEEEEeh---hhhhhhhhhhhhhhc
Q 000101 1432 QAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELR 1468 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrLva---VEEkI~s~q~eKe~l 1468 (2239)
|++||+||+||++.|.||+++. ++++|.....++...
T Consensus 592 Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 592 QRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp HHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred HHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 9999999999999999998854 666666665544433
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=421.97 Aligned_cols=427 Identities=18% Similarity=0.180 Sum_probs=276.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC--CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL--PSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~Kwa--Psl 1076 (2239)
+|+|||.+++.|++. + ++||+++||+|||++++.++..++. ...+++|||||+ .|+.||..+|.+|+ +..
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 799999999999886 3 8999999999999999999888775 345689999997 69999999999998 566
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChhh--HHHHHhh-ccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~S--KlskaLk-~Lka~r 1151 (2239)
.+.+++|........ .....++|+|+||+.+..... .+...+|++|||||||++++... .+...+. .....+
T Consensus 82 ~v~~~~g~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 82 KIVALTGEKSPEERS---KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GEEEECSCSCHHHHH---HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred heEEeeCCcchhhhh---hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 888888876543321 112367999999999987643 45667899999999999986422 2222222 235678
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCccc---CChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1228 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF---~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmL 1228 (2239)
+|+|||||. ++..+++.+++++....+ .....+...+..+........... .....+...+.+++.
T Consensus 159 ~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 227 (494)
T 1wp9_A 159 VIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP----------EIYKEVRKLLREMLR 227 (494)
T ss_dssp EEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC----------HHHHHHHHHHHHHHH
T ss_pred EEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc----------HHHHHHHHHHHHHHH
Confidence 999999999 777788877777755432 222111111111110000000000 123456667778888
Q ss_pred hHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhc----ChhhHHHHHHHHHHHHHHHHHH
Q 000101 1229 RRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK----NPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1229 RRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k----~~~~~~k~~ksL~niImqLRKi 1303 (2239)
++++......+..... .+....+......++..+................... ...........+...+..|...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (494)
T 1wp9_A 228 DALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEE 307 (494)
T ss_dssp HHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 8877655443322211 0111111122222222221110000000000000000 0000001112334444555555
Q ss_pred cCCCCCCCCC--ccccch----------hhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCe
Q 000101 1304 CNHPLLNYPY--FSDLSK----------DFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLV 1369 (2239)
Q Consensus 1304 CnHP~L~~p~--~~~~s~----------d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGik 1369 (2239)
|.|+...... +.+... ......+.|+..|.++|..+. ..++|+||||+++.+++.|.++|...|+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 387 (494)
T 1wp9_A 308 AKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIK 387 (494)
T ss_dssp HHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCC
Confidence 5442110000 000000 001145779999999999876 56899999999999999999999999999
Q ss_pred EEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccC
Q 000101 1370 YRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1370 y~RLDG--------sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIG 1441 (2239)
+..+|| +++.++|.+++++|++++.. ||++|+++++||||+.|++||+||++|||..+.||+||+||.|
T Consensus 388 ~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g 464 (494)
T 1wp9_A 388 AKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM 464 (494)
T ss_dssp EEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC
T ss_pred cEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC
Confidence 999999 99999999999999975533 6999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEeh
Q 000101 1442 QKREVKVIYMEA 1453 (2239)
Q Consensus 1442 QkKeV~VyrLva 1453 (2239)
+ +.+|+|++
T Consensus 465 ~---g~~~~l~~ 473 (494)
T 1wp9_A 465 P---GRVIILMA 473 (494)
T ss_dssp C---SEEEEEEE
T ss_pred C---ceEEEEEe
Confidence 8 55666644
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=387.72 Aligned_cols=357 Identities=19% Similarity=0.222 Sum_probs=254.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPsl 1076 (2239)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||+ .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 45899999999998775 4569999999999999998887654 4689999998 7999999999995 56
Q ss_pred c-eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEe
Q 000101 1077 S-CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1077 k-vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLL 1155 (2239)
. +.++.|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+|
T Consensus 159 ~~v~~~~g~~~~-----------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~l 224 (472)
T 2fwr_A 159 EYVGEFSGRIKE-----------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGL 224 (472)
T ss_dssp GGEEEBSSSCBC-----------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEE
T ss_pred cceEEECCCcCC-----------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEE
Confidence 6 7777776532 46899999999987765543 36999999999999886654 35566788899999
Q ss_pred cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhh
Q 000101 1156 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 1235 (2239)
Q Consensus 1156 TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDV 1235 (2239)
||||.+++..+ . .|..++.|.+.++...++
T Consensus 225 SATp~~~~~~~----------------~----------------------------------~l~~~~~~~~~~~~~~~l 254 (472)
T 2fwr_A 225 TATFEREDGRH----------------E----------------------------------ILKEVVGGKVFELFPDSL 254 (472)
T ss_dssp ESCCCCTTSGG----------------G----------------------------------SHHHHTCCEEEECCHHHH
T ss_pred ecCccCCCCHH----------------H----------------------------------HHHHHhCCeEeecCHHHH
Confidence 99998654211 0 122233333334333343
Q ss_pred hc-CCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000101 1236 EG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1314 (2239)
Q Consensus 1236 ek-dLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~ 1314 (2239)
.. .+++.....+.+.+++.+...|..+.......+...... ......+ ..+ + ...+..+.......
T Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~~~---~---~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 255 AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDF-----NKI---V---MASGYDERAYEALR 321 (472)
T ss_dssp TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSS-----TTT---T---TTTCCSSSSSTTTH
T ss_pred hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhH-----HHH---H---HHhccCHHHHHHHH
Confidence 32 367777778899999999888864422111000000000 0000000 000 0 00000000000000
Q ss_pred -cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCC
Q 000101 1315 -SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1393 (2239)
Q Consensus 1315 -~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~d 1393 (2239)
...........+.|+..|.++|.. ..++++||||+++.+++.|.+.|. +..++|+++..+|.++++.|+++.
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 000011123456799999999887 568999999999999999999983 556999999999999999999754
Q ss_pred CCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc-ceEEEEEEeh
Q 000101 1394 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1453 (2239)
Q Consensus 1394 s~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk-KeV~VyrLva 1453 (2239)
.. ||++|+++++||||+.+++||+||++||+..+.|++||++|.|+. +.|.||++++
T Consensus 395 ~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 395 FR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp CS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred CC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 44 689999999999999999999999999999999999999999998 8899999975
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=373.35 Aligned_cols=413 Identities=15% Similarity=0.144 Sum_probs=212.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~-SLLsQW~~Ef~KwaP- 1074 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4899999999999975 6789999999999999999988877753221 5689999997 599999999999987
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--c-ccCCceEEEecccccccChhhHHHHHhhcc---
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY--- 1147 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L--- 1147 (2239)
++.+..++|......... .....++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVE--KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHH--HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHH--HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHHh
Confidence 788888888764332211 1123589999999999876432 3 455789999999999987654 22222222
Q ss_pred ------ccceEEEecCCCCCCCH-------HHHHHHHhhhcCccc----CChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1148 ------RCQRRLLLTGTPLQNDL-------KELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1148 ------ka~rRLLLTGTPIQNnL-------~ELwsLLnFLlP~iF----~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
...++|+|||||..++. ..+..+...+....+ .....+..++..|................ .
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 237 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA-A 237 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH-H
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH-H
Confidence 23579999999988653 333334444443322 23455666665554322111111111111 1
Q ss_pred HHHHHHHHHHHhhhh----------------------HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCc
Q 000101 1211 KKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTL 1268 (2239)
Q Consensus 1211 e~~lii~RLhklLrP----------------------FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l 1268 (2239)
........++..+.. ++....+......+|. ...+..+|..+......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTEH 307 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHHH
Confidence 111122233333222 1222111111111111 11122222211110000
Q ss_pred ccCchhHHhhhhcChhhHHHHHHHHHHHHHHH-----------------------HHHcCCCCCCCCCccccchhhHhhc
Q 000101 1269 RVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL-----------------------RKTCNHPLLNYPYFSDLSKDFLVKS 1325 (2239)
Q Consensus 1269 ~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL-----------------------RKiCnHP~L~~p~~~~~s~d~Li~~ 1325 (2239)
. ............ .........+...+..+ ...|..+ ...
T Consensus 308 l-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~ 370 (556)
T 4a2p_A 308 L-RKYNDALIISED-ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDE---------------TNE 370 (556)
T ss_dssp H-HHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCS---------------SSC
T ss_pred H-HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCC---------------CCC
Confidence 0 000000000000 00000011111111111 1111111 123
Q ss_pred ccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1326 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1326 SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r------------Giky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
++|+..|.++|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 679999999998876 56899999999999999999999765 5566677788999999999999997
Q ss_pred -CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1392 -HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1392 -~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+... |||+|+++++||||++|++||+||+||||..|+||+|| +|. +.+.+|.|++
T Consensus 451 ~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~ 506 (556)
T 4a2p_A 451 SKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 506 (556)
T ss_dssp ---CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred cCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 4433 78999999999999999999999999999999999999 665 5566666654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=368.65 Aligned_cols=429 Identities=14% Similarity=0.155 Sum_probs=232.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~-SLLsQW~~Ef~KwaP- 1074 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999988877753321 6789999998 589999999999986
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--c-ccCCceEEEecccccccChhhHHHHHhhcc---
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY--- 1147 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L--- 1147 (2239)
++.+..++|.......... ....++|+|+||+.+...... + ...+|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQH--IIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHH--HHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHH--HhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHh
Confidence 6788888887654332211 123589999999999876432 3 345789999999999987654 22222222
Q ss_pred -------ccceEEEecCCCCCCC-------HHHHHHHHhhhcCccc----CChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1148 -------RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1148 -------ka~rRLLLTGTPIQNn-------L~ELwsLLnFLlP~iF----~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
...++|+|||||..++ +..++.+..++....+ .....+..++..|............+...
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 234 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK- 234 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH-
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH-
Confidence 2246999999999877 3444444455553322 23345555555443221111110111111
Q ss_pred HHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHH-HHHHHh-cCcccCchhHHhhhhcChhhHH
Q 000101 1210 EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIKAT-GTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1210 ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY-~~I~~~-~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
......+.+++.++..++-. +. .+. .++. ..+.......| ..+... ......................
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-l~-~~~-~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEE-LG-KLF-QIQN-------REFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYT 304 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHH-HH-GGG-GCCS-------CCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-hh-hhh-hccc-------ccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHH
Confidence 11112233344443322211 00 000 0100 00111000000 000000 0000000000000000000000
Q ss_pred HH---------------HHHHHHHHHHHHHHcCCCCCCCCCccccc-------------hhhHhhcccHHHHHHHHHHHH
Q 000101 1288 KV---------------YKTLNNRCMELRKTCNHPLLNYPYFSDLS-------------KDFLVKSCGKLWILDRILIKL 1339 (2239)
Q Consensus 1288 k~---------------~ksL~niImqLRKiCnHP~L~~p~~~~~s-------------~d~Li~~SGKLelLdrIL~kL 1339 (2239)
.. .......+..+-..+.+..+. .....+. .......++|+..|..+|..+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 383 (555)
T 3tbk_A 305 SHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFD-ETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEE 383 (555)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC------HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 00 000000000110001000000 0000000 000112478999999999988
Q ss_pred Hhc--CCeEEEEEccHHHHHHHHHHHHHcC------------CeEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEecc
Q 000101 1340 QRT--GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIR 1404 (2239)
Q Consensus 1340 kat--GhKVLIFSQ~t~~LDILed~L~~rG------------iky~RLDGsts~eeRqeiL~~FNs-~ds~~~VfLLSTr 1404 (2239)
... ++|+||||+++.+++.|.++|...+ ..+..+||+++.++|.+++++|++ +... |||+|+
T Consensus 384 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~ 460 (555)
T 3tbk_A 384 YHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATS 460 (555)
T ss_dssp HHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECC
T ss_pred hccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcc
Confidence 654 4999999999999999999998764 345556679999999999999997 4433 688999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
++++||||++|++||+||+||||..|+||+|| |+.+.+.+|.|++
T Consensus 461 ~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 461 VADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp CTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred hhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 99999999999999999999999999999999 4456777777755
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=389.47 Aligned_cols=414 Identities=15% Similarity=0.144 Sum_probs=219.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 45899999999999875 6789999999999999999998887753321 67899999965 99999999999997
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hc-ccCCceEEEecccccccChhhHHHHHhhcc--
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1147 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L-- 1147 (2239)
++.+..++|......... .....++|+|+||+.+..... .+ ...+|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~--~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~ 398 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVE--KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (797)
T ss_dssp GGTCCEEEECCC-----CHH--HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHH--HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 788888888864433221 122478999999999987643 23 345789999999999987544 22222222
Q ss_pred -------ccceEEEecCCCCCCCH----------HHHHHHHhhhc-CcccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1148 -------RCQRRLLLTGTPLQNDL----------KELWSLLNLLL-PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1148 -------ka~rRLLLTGTPIQNnL----------~ELwsLLnFLl-P~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
...++|+|||||.+++. .+||.+|++-. .........+..++..|............... .
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 477 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF-A 477 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH-H
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHH-H
Confidence 22569999999987543 33444444311 11223345666666655433211111111111 1
Q ss_pred HHHHHHHHHHHHhhhhHHh----------------------hHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcC
Q 000101 1210 EKKVIIIHRLHQILEPFML----------------------RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1267 (2239)
Q Consensus 1210 ee~~lii~RLhklLrPFmL----------------------RRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~ 1267 (2239)
.....+...++.+++.++- ...+......++.. .....+|..+.....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTE 547 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHH
Confidence 1112233444444433221 11111111111111 111111211110000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHH-----------------------HHHHcCCCCCCCCCccccchhhHhh
Q 000101 1268 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME-----------------------LRKTCNHPLLNYPYFSDLSKDFLVK 1324 (2239)
Q Consensus 1268 l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq-----------------------LRKiCnHP~L~~p~~~~~s~d~Li~ 1324 (2239)
. +........+... .........+...+.. +...+..+ ..
T Consensus 548 ~-l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~---------------~~ 610 (797)
T 4a2q_A 548 H-LRKYNDALIISED-ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDE---------------TN 610 (797)
T ss_dssp H-HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCT---------------TC
T ss_pred H-HHHHHHHHhhhcc-ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCC---------------CC
Confidence 0 0000000000000 0000001111111111 11111111 12
Q ss_pred cccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1325 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r------------Giky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.++|+..|..+|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4779999999998854 56799999999999999999999863 566777889999999999999999
Q ss_pred c-CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1391 S-HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1391 s-~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+ +... |||+|+++++||||++|++||+||+||||..|+||+|| +|. +.+.+|.|++
T Consensus 691 ~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp ---CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred ccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 7 4434 79999999999999999999999999999999999999 665 5666676654
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=356.43 Aligned_cols=236 Identities=25% Similarity=0.360 Sum_probs=174.7
Q ss_pred HHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000101 1226 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1305 (2239)
Q Consensus 1226 FmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCn 1305 (2239)
--+||+|++|..+||++.+.+++|+|++.|+.+|+.+.......+. ... .......+++.++.||++|+
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~---------~~~--~~~~~~~~l~~l~~Lrq~~~ 80 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID---------SVT--GIKRKGMILSTLLKLKQIVD 80 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT---------TCC--HHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---------hcc--ccchHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999988654211111 000 01123457788999999999
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHH
Q 000101 1306 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1306 HP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqe 1384 (2239)
||+++... ..++..++|+..|.++|..+...++||||||+++.++++|+.+|... |+.+.+|||+++.++|.+
T Consensus 81 hP~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 81 HPALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp CTHHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHH
T ss_pred CHHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 99886421 12456789999999999999989999999999999999999999985 999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhh
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1464 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~e 1464 (2239)
+++.|+.+ ..+.|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++
T Consensus 155 ~i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~----------- 222 (271)
T 1z5z_A 155 IISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS----------- 222 (271)
T ss_dssp HHHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE-----------
T ss_pred HHHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee-----------
Confidence 99999974 356789999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1465 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1465 Ke~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
.++||+.|++ ++..|..+.+.+++++
T Consensus 223 ---------------------~~TiEe~i~~-~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 ---------------------VGTLEEKIDQ-LLAFKRSLFKDIISSG 248 (271)
T ss_dssp ---------------------TTSHHHHHHH-HHHHCHHHHTTGGGGT
T ss_pred ---------------------CCCHHHHHHH-HHHHHHHHHHHHHccC
Confidence 2799999998 4678999999998765
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=390.27 Aligned_cols=415 Identities=16% Similarity=0.155 Sum_probs=220.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~--~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35899999999999975 678999999999999999888877654321 167899999965 99999999999987
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--c-ccCCceEEEecccccccChhhHHHHHhhcc--
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1147 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrIKN~~SKlskaLk~L-- 1147 (2239)
++.+.+++|....+.... .....++|+|+||+.|...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~--~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVE--KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTTCCEEEECCC-----CCH--HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHH--HhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 788888888764432211 1123579999999999876432 2 344689999999999987654 33333332
Q ss_pred -------ccceEEEecCCCCCCCHH----------HHHHHHhhhc-CcccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000101 1148 -------RCQRRLLLTGTPLQNDLK----------ELWSLLNLLL-PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1209 (2239)
Q Consensus 1148 -------ka~rRLLLTGTPIQNnL~----------ELwsLLnFLl-P~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ 1209 (2239)
...++|+|||||.+++.. +||.+|+.-. .........+..++..|................
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~- 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA- 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH-
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH-
Confidence 225699999999886543 3333333211 112223456666666554332111111111111
Q ss_pred HHHHHHHHHHHHhhhhH----------------------HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcC
Q 000101 1210 EKKVIIIHRLHQILEPF----------------------MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1267 (2239)
Q Consensus 1210 ee~~lii~RLhklLrPF----------------------mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~ 1267 (2239)
.....+...++.++..+ +....+......+|.. .....+|..+.....
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~----------~~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTE 547 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHH
Confidence 11111223333333221 2222222122222221 111111111100000
Q ss_pred cccCchhHHhhhh----------------------cChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhc
Q 000101 1268 LRVDPEDEKRRVQ----------------------KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKS 1325 (2239)
Q Consensus 1268 l~l~~~~ek~~l~----------------------k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~ 1325 (2239)
. +........+. ............+...+..|...+.++. ..
T Consensus 548 ~-l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~---------------~~ 611 (936)
T 4a2w_A 548 H-LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET---------------NE 611 (936)
T ss_dssp H-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTT---------------CC
T ss_pred H-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccC---------------CC
Confidence 0 00000000000 0000000011111222223333332221 23
Q ss_pred ccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1326 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1326 SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r------------Giky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
++|+..|..+|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 679999999998864 55799999999999999999999976 5566677888999999999999997
Q ss_pred -CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1392 -HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1392 -~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+... |||+|+++++||||+.|++||+||+|||+..++||+|| +|. +.+.||.|++
T Consensus 692 ~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~ 747 (936)
T 4a2w_A 692 SKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (936)
T ss_dssp --CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred cCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEe
Confidence 4433 79999999999999999999999999999999999999 565 5566666644
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=361.53 Aligned_cols=420 Identities=16% Similarity=0.178 Sum_probs=219.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~-SLLsQW~~Ef~KwaP- 1074 (2239)
.+|+|||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||+|+ .|+.||..+|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4899999999999986 7789999999999999999988877654332 2689999997 699999999999997
Q ss_pred -CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hc-ccCCceEEEecccccccChhhHHHHH---hhc-
Q 000101 1075 -SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARD---LDR- 1146 (2239)
Q Consensus 1075 -slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L-~kikWd~VIIDEAHrIKN~~SKlska---Lk~- 1146 (2239)
++.+..+.|+...+..... .....+|+|+||+.|.+... .+ ...+|++|||||||++.+...-.... +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~--~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~ 165 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQ--IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 165 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHH--HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHH--hccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHh
Confidence 6788888887543322211 12368999999999987643 23 45578999999999998765322211 111
Q ss_pred c-----ccceEEEecCCCCCCC-------HHHHHHHHhhhcCcccCC----hHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000101 1147 Y-----RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVFDN----RKAFHDWFSQPFQKEGPTHNADDDWLETE 1210 (2239)
Q Consensus 1147 L-----ka~rRLLLTGTPIQNn-------L~ELwsLLnFLlP~iF~s----~k~F~e~F~kPf~~~g~~~~~e~d~l~~e 1210 (2239)
+ ...++|+|||||..++ +.+|+.++..+....+.. ......++..|..............+..
T Consensus 166 ~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~- 244 (696)
T 2ykg_A 166 LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY- 244 (696)
T ss_dssp HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHH-
T ss_pred hcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHH-
Confidence 1 3467899999998543 555666666555544322 2334444444421110000000000100
Q ss_pred HHHHHHHHHHHhh-----------------------hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcC
Q 000101 1211 KKVIIIHRLHQIL-----------------------EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1267 (2239)
Q Consensus 1211 e~~lii~RLhklL-----------------------rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~ 1267 (2239)
....+...+..+. ..+++++.+......+|.+... ...-..++.....-.
T Consensus 245 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~l~- 317 (696)
T 2ykg_A 245 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE------SRICKALFLYTSHLR- 317 (696)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCH------HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhh------hHHHHHHHHHHHHHH-
Confidence 0000001111111 1122222222222222221110 000001111000000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhH-----------------hhcccHHH
Q 000101 1268 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-----------------VKSCGKLW 1330 (2239)
Q Consensus 1268 l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~L-----------------i~~SGKLe 1330 (2239)
.......+... .........+...+..++... ........+ ...+.|+.
T Consensus 318 ----~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~ 383 (696)
T 2ykg_A 318 ----KYNDALIISEH-ARMKDALDYLKDFFSNVRAAG---------FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 383 (696)
T ss_dssp ----HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHH
T ss_pred ----HHhHHHhccch-hhHHHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 00000000000 000000111111111111000 000000000 02467999
Q ss_pred HHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcC----CeEEeecC--------CCCHHHHHHHHHHHhc-CCCC
Q 000101 1331 ILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFNS-HDSD 1395 (2239)
Q Consensus 1331 lLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rG----iky~RLDG--------sts~eeRqeiL~~FNs-~ds~ 1395 (2239)
.|..+|.... ..++++||||+++..++.|.++|...| +.+..++| +++.++|.+++++|+. +...
T Consensus 384 ~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~ 463 (696)
T 2ykg_A 384 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 463 (696)
T ss_dssp HHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc
Confidence 9999998774 357899999999999999999999988 89999954 9999999999999996 4444
Q ss_pred ccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1396 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1396 ~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|||+|+++++|||+++|++||+||+|||+..|.||+|| +|. +...++.+++
T Consensus 464 ---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 464 ---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp ---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred ---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 58999999999999999999999999999999999999 886 3445555544
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=348.70 Aligned_cols=337 Identities=13% Similarity=0.135 Sum_probs=244.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH--CCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW--LPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~Kw--aPsl 1076 (2239)
+|+|||.+++.+++. +.++||+++||+|||++++.++..++.. ..+++|||||+ .|+.||..+|.+| ++.+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999886 4678999999999999998888776652 23589999997 5889999999999 5666
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEEe
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLL 1155 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLLL 1155 (2239)
.+..+.|......+ .....+|+|+||+.+.+.... ...+|++|||||||++.+. .....+..+ .+.++|+|
T Consensus 187 ~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~l 258 (510)
T 2oca_A 187 MIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGL 258 (510)
T ss_dssp GEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEE
T ss_pred ceEEEecCCccccc-----cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEE
Confidence 77777766443222 235789999999998776332 2347999999999999863 345556777 56789999
Q ss_pred cCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhh
Q 000101 1156 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 1235 (2239)
Q Consensus 1156 TGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDV 1235 (2239)
|||| .+...++|.+..++.+.++.. + .....+
T Consensus 259 SATp-~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~-------------------------------- 290 (510)
T 2oca_A 259 SGSL-RDGKANIMQYVGMFGEIFKPV----------T-----TSKLME-------------------------------- 290 (510)
T ss_dssp ESCG-GGCSSCHHHHHHHHCSEECCC----------C-----CC------------------------------------
T ss_pred EeCC-CCCcccHHHhHHhhCCeEEee----------C-----HHHHhh--------------------------------
Confidence 9999 555566777777665544211 0 000000
Q ss_pred hcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Q 000101 1236 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 1315 (2239)
Q Consensus 1236 ekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~ 1315 (2239)
...+++.....+.+.++........ + ..+ .. .+..++
T Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~-----~~------~~~~~~----------- 327 (510)
T 2oca_A 291 DGQVTELKINSIFLRYPDEFTTKLK-----G----------------KTY-----QE------EIKIIT----------- 327 (510)
T ss_dssp -----CCEEEEEEEECCHHHHHHHT-----T----------------CCH-----HH------HHHHHH-----------
T ss_pred CCcCCCceEEEEeecCChHHhcccc-----c----------------cch-----HH------HHHHHh-----------
Confidence 0135556666666666654431100 0 000 00 011111
Q ss_pred ccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCC
Q 000101 1316 DLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1394 (2239)
Q Consensus 1316 ~~s~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds 1394 (2239)
....|...+..++..+... +.++||||. +..++.|.++|...+..+..+||+++.++|.++++.|++++.
T Consensus 328 --------~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 328 --------GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp --------TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred --------ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 1123555566666665444 556677777 888888999999998899999999999999999999997544
Q ss_pred CccEEEEec-cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEeh
Q 000101 1395 DCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1453 (2239)
Q Consensus 1395 ~~~VfLLST-rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLva 1453 (2239)
. +||+| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.+..
T Consensus 399 ~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 399 I---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp C---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred C---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 4 67777 99999999999999999999999999999999999999987 788888754
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=357.95 Aligned_cols=395 Identities=17% Similarity=0.222 Sum_probs=233.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHHH-HHHHHHHC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVNW-KSELHKWL 1073 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k---~~~GP~LIVVP~S-LLsQW-~~Ef~Kwa 1073 (2239)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||+. |+.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999987 67899999999999999999888766532 2337899999975 88999 99999999
Q ss_pred CC-CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--------hhcccCCceEEEecccccccChhh---HHH
Q 000101 1074 PS-VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRES---VLA 1141 (2239)
Q Consensus 1074 Ps-lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrIKN~~S---Kls 1141 (2239)
+. +.+..+.|......... ......+|+|+||+.|.... ..+....|++|||||||++.+... ...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~--~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFP--EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp TTTSCEEEEC----CCCCHH--HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred CcCceEEEEeCCcchhhHHH--hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 87 88888888754432211 11257899999999998654 234556899999999999854221 111
Q ss_pred HHhhc-c-------------ccceEEEecCCCCCCC-------HHHHHHHHhhhcC-ccc---CChHHHHhhhcCCcccC
Q 000101 1142 RDLDR-Y-------------RCQRRLLLTGTPLQND-------LKELWSLLNLLLP-EVF---DNRKAFHDWFSQPFQKE 1196 (2239)
Q Consensus 1142 kaLk~-L-------------ka~rRLLLTGTPIQNn-------L~ELwsLLnFLlP-~iF---~s~k~F~e~F~kPf~~~ 1196 (2239)
..+.. + ...++|+|||||..++ ..++..++..+.+ .+. .....+..++..|....
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 12211 1 4457899999999863 3344445555555 222 12244555554443211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHH----HHHhc----Cc
Q 000101 1197 GPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW----IKATG----TL 1268 (2239)
Q Consensus 1197 g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~----I~~~~----~l 1268 (2239)
........+.. ...+..+...+..++ ++.+.. .+.. ..|.. +.... ..
T Consensus 240 ~~~~~~~~~~~-----~~~l~~l~~~i~~~~----------~~~~~~------~~g~---~~~~~~~~~~~~~~~~~~~~ 295 (699)
T 4gl2_A 240 AIADATREDPF-----KEKLLEIMTRIQTYC----------QMSPMS------DFGT---QPYEQWAIQMEKKAAKEGNR 295 (699)
T ss_dssp EEEC-----CH-----HHHHHHHHHHHHHHH----------TCCCCS------CSSS---HHHHHHHHHHHHHHHHHTCT
T ss_pred EEcccccCChH-----HHHHHHHHHHHHHHh----------ccCcch------hccc---hHHHHHHHHHHHHHHHhhhh
Confidence 10000000000 011111211111111 010000 0000 00110 00000 00
Q ss_pred ccCchhHHhhhh------cChhhHHHHHHHHHHHHH------------------------------------HHHHHcCC
Q 000101 1269 RVDPEDEKRRVQ------KNPIYQAKVYKTLNNRCM------------------------------------ELRKTCNH 1306 (2239)
Q Consensus 1269 ~l~~~~ek~~l~------k~~~~~~k~~ksL~niIm------------------------------------qLRKiCnH 1306 (2239)
............ .........+..+...+. .|..+...
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 375 (699)
T 4gl2_A 296 KERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAEN 375 (699)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 000000000000 000000000011111111 11222211
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---CCeEEEEEccHHHHHHHHHHHHHc------CCeEEeecCC-
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT- 1376 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkat---GhKVLIFSQ~t~~LDILed~L~~r------Giky~RLDGs- 1376 (2239)
+. ..+.|+..|..+|...... +.++||||+++.+++.|.++|... |+.+..+||+
T Consensus 376 ~~---------------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~ 440 (699)
T 4gl2_A 376 PE---------------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAG 440 (699)
T ss_dssp CC-------------------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSC
T ss_pred CC---------------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCC
Confidence 10 0245677777777765443 789999999999999999999987 8999999999
Q ss_pred -------CCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccC
Q 000101 1377 -------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1441 (2239)
Q Consensus 1377 -------ts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIG 1441 (2239)
++..+|.+++++|++++.. |||+|+++++||||+++++||+||+|||+..|.||+|||+|-|
T Consensus 441 ~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 441 HSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999975544 6899999999999999999999999999999999999986655
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=317.63 Aligned_cols=316 Identities=16% Similarity=0.164 Sum_probs=225.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. |+.||..++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998876 678999999999999998877766543233445899999975 8899999999986 46
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChhh---HHHHHhhccc-c
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR-C 1149 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~S---KlskaLk~Lk-a 1149 (2239)
+.+.++.|........ ..+....++|+|+||+.+..... .+...+|++|||||||++.+... .+...+..+. .
T Consensus 106 ~~~~~~~g~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~ 184 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 184 (391)
T ss_dssp CCEEEECTTSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSS
T ss_pred eEEEEEeCCCCHHHHH-HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCC
Confidence 7888888875543322 22344567999999999976532 24445899999999999976322 2222333333 4
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
..+++|||||-.. ..++. ..++..|........
T Consensus 185 ~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~~~~~~~~----------------------------- 217 (391)
T 1xti_A 185 KQVMMFSATLSKE-IRPVC-----------------RKFMQDPMEIFVDDE----------------------------- 217 (391)
T ss_dssp SEEEEEESSCCST-HHHHH-----------------HHHCSSCEEEECCCC-----------------------------
T ss_pred ceEEEEEeeCCHH-HHHHH-----------------HHHcCCCeEEEecCc-----------------------------
Confidence 5689999997432 11110 111111110000000
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
....+.......+.+
T Consensus 218 -----~~~~~~~~~~~~~~~------------------------------------------------------------ 232 (391)
T 1xti_A 218 -----TKLTLHGLQQYYVKL------------------------------------------------------------ 232 (391)
T ss_dssp -----CCCCCTTCEEEEEEC------------------------------------------------------------
T ss_pred -----cccCcccceEEEEEc------------------------------------------------------------
Confidence 000000001111111
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHH
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1389 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~F 1389 (2239)
....|...|..++... .++++||||+....++.+..+|...|+.+..+||+++.++|..+++.|
T Consensus 233 --------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 233 --------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp --------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 1122444555555543 578999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1390 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1390 Ns~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++++.. +|++|+++++|||++.+++||+||+|||+..+.|++||++|.|++..+.++..
T Consensus 297 ~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 297 KDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred hcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 975444 79999999999999999999999999999999999999999998877766654
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=345.39 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=217.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEech-HHHHHHH-HH
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVPN-AVLVNWK-SE 1068 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lie~k------~~~GP~LIVVP~-SLLsQW~-~E 1068 (2239)
+.+|+|||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++|||||. .|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3589999999999999877655 4579999999999999999888887532 156789999995 5889999 88
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh------hhcccCCceEEEecccccccChh-hHHH
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SVLA 1141 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrIKN~~-SKls 1141 (2239)
|..|.+.+ ..+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.. ....
T Consensus 256 ~~~~~~~~--~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 256 FTPFGDAR--HKIEGG----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp CTTTCSSE--EECCC------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CH
T ss_pred HHhcchhh--hhhhcc----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHH
Confidence 88876532 222221 12346799999999997652 33445579999999999997653 3444
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhk 1221 (2239)
..+..+...++|+|||||..+...+++.++. .++.... +..
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~---------------------~~~ 364 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS---------------------LRQ 364 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---------------------HHH
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---------------------HHH
Confidence 5556677788999999999988776665542 1111100 000
Q ss_pred hhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1222 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1222 lLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
.+. + ..+++.....+.+....................+. ..
T Consensus 365 ~i~---------~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------------- 405 (590)
T 3h1t_A 365 GID---------D--GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP-----DG----------------------- 405 (590)
T ss_dssp HHH---------H--TSSCCEEEEEEEETTCC------------------------------------------------
T ss_pred Hhh---------C--CccCCcEEEEeeeeeeccccccccccccccccccc-----cc-----------------------
Confidence 000 0 11223333333332221111000000000000000 00
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH---hcCCeEEEEEccHHHHHHHHHHHHHcCCe--------E
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ---RTGHRVLLFSTMTKLLDILEEYLQWRQLV--------Y 1370 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk---atGhKVLIFSQ~t~~LDILed~L~~rGik--------y 1370 (2239)
.+.....+..+....+...+.+.|.++. ..+.|+||||+.+.+++.|.+.|...+.. +
T Consensus 406 -----------~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 474 (590)
T 3h1t_A 406 -----------EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYV 474 (590)
T ss_dssp --------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSE
T ss_pred -----------cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeE
Confidence 0000000001111122233333232221 34689999999999999999999876543 6
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCC---cceEE
Q 000101 1371 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREVK 1447 (2239)
Q Consensus 1371 ~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQ---kKeV~ 1447 (2239)
..++|.++ ++|.+++++|++++.++.+||+||+++++|||++.+++||+|+++||+..|.|++||++|+|. +..+.
T Consensus 475 ~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~ 553 (590)
T 3h1t_A 475 ARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFN 553 (590)
T ss_dssp EECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEE
T ss_pred EEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEE
Confidence 78999986 479999999998777788999999999999999999999999999999999999999999995 56788
Q ss_pred EEEEe
Q 000101 1448 VIYME 1452 (2239)
Q Consensus 1448 VyrLv 1452 (2239)
|+.++
T Consensus 554 I~D~~ 558 (590)
T 3h1t_A 554 IIDYT 558 (590)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 88887
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-31 Score=314.43 Aligned_cols=312 Identities=17% Similarity=0.196 Sum_probs=222.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||+. |+.||..++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999986 677999999999999998877766553333455899999975 88899999999986 46
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChhh--HHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lk-a~r 1151 (2239)
.+..+.|......... .....++|+|+||+.+..... .+...+|++|||||||++.+... .+...+..+. ...
T Consensus 119 ~~~~~~g~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~ 196 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDIL--RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196 (400)
T ss_dssp CEEEECSSSCHHHHHH--HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred eEEEEeCCcchHHHHH--HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCce
Confidence 6777777765443322 223578999999999876532 23445789999999999876432 2222333333 456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++||||+-. .+..+ +..++..|+.....
T Consensus 197 ~i~lSAT~~~----~~~~~--------------~~~~~~~~~~~~~~--------------------------------- 225 (400)
T 1s2m_A 197 SLLFSATFPL----TVKEF--------------MVKHLHKPYEINLM--------------------------------- 225 (400)
T ss_dssp EEEEESCCCH----HHHHH--------------HHHHCSSCEEESCC---------------------------------
T ss_pred EEEEEecCCH----HHHHH--------------HHHHcCCCeEEEec---------------------------------
Confidence 8999999621 11100 01111111100000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
.. ...+........+
T Consensus 226 -~~--~~~~~~~~~~~~~-------------------------------------------------------------- 240 (400)
T 1s2m_A 226 -EE--LTLKGITQYYAFV-------------------------------------------------------------- 240 (400)
T ss_dssp -SS--CBCTTEEEEEEEC--------------------------------------------------------------
T ss_pred -cc--cccCCceeEEEEe--------------------------------------------------------------
Confidence 00 0000000001000
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
....|+..|..++... .+.++||||+....++.+..+|...|+.+..+||+++.++|..+++.|++
T Consensus 241 ------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 241 ------------EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp ------------CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ------------chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 1123555555555542 46799999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+... +|++|+++++|||++++++||+||++||+..+.||+||++|.|+...|.+++
T Consensus 307 g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 307 GKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp TSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred CCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 5444 7999999999999999999999999999999999999999999877665554
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=314.92 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=225.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
+|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. |+.||..+|.+|... +
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 699999999999886 678999999999999999887776553334557899999976 889999999999854 5
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lk-a~r 1151 (2239)
.+..+.|.......... .....+|+|+||+.+..... .+....|++|||||||++.+.. ..+...+..+. ...
T Consensus 135 ~~~~~~g~~~~~~~~~~--~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~ 212 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRK--LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 212 (410)
T ss_dssp CEEEECTTSCHHHHHHH--HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCE
T ss_pred EEEEEECCCCHHHHHHH--hhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCce
Confidence 56666666544433221 22467999999999876532 3445679999999999987644 33444444453 456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++|||||-. ++..++. .++..|+....
T Consensus 213 ~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~---------------------------------- 240 (410)
T 2j0s_A 213 VVLISATLPH----EILEMTN--------------KFMTDPIRILV---------------------------------- 240 (410)
T ss_dssp EEEEESCCCH----HHHTTGG--------------GTCSSCEEECC----------------------------------
T ss_pred EEEEEcCCCH----HHHHHHH--------------HHcCCCEEEEe----------------------------------
Confidence 8999999721 1111111 01111110000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
......++......+.+.-
T Consensus 241 -~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 259 (410)
T 2j0s_A 241 -KRDELTLEGIKQFFVAVER------------------------------------------------------------ 259 (410)
T ss_dssp -CGGGCSCTTEEEEEEEESS------------------------------------------------------------
T ss_pred -cCccccCCCceEEEEEeCc------------------------------------------------------------
Confidence 0000001111111111110
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
...|+..|..++... ...++||||+....++.|..+|...|+.+..+||+++..+|..+++.|++
T Consensus 260 -------------~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 260 -------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp -------------TTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred -------------HHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC
Confidence 011444555555543 35699999999999999999999999999999999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+... +|++|+++++|||++++++||+||++|++..|.||+||++|.|++..+.++..
T Consensus 325 g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 325 GASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp TSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 5544 78999999999999999999999999999999999999999998876665543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=309.35 Aligned_cols=307 Identities=20% Similarity=0.252 Sum_probs=220.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++.+++. .+.++|++.+||+|||++++.++..++. .....++|||||.. |+.||.+++.+|++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999999876 2357899999999999998887766553 23456899999975 78999999999986 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhcc-ccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~L-ka~r 1151 (2239)
.+..+.|......... .....+|+|+||+.+..... .+...+|++|||||||++.+.. ..+...+..+ ...+
T Consensus 104 ~v~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 180 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIK---ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180 (367)
T ss_dssp CEEEECTTSCHHHHHH---HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCE
T ss_pred eEEEEECCcchHHHHh---hcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCce
Confidence 6666666654433221 12378999999999986543 2344578999999999997644 3344444444 3456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++|||||-.. +..++. .++..+..
T Consensus 181 ~i~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------------- 205 (367)
T 1hv8_A 181 ILLFSATMPRE----ILNLAK--------------KYMGDYSF------------------------------------- 205 (367)
T ss_dssp EEEECSSCCHH----HHHHHH--------------HHCCSEEE-------------------------------------
T ss_pred EEEEeeccCHH----HHHHHH--------------HHcCCCeE-------------------------------------
Confidence 78899998321 111110 01100000
Q ss_pred HhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1232 VEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1232 KkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+....+.... ..+.+
T Consensus 206 ---~~~~~~~~~~~~~~~~------------------------------------------------------------- 221 (367)
T 1hv8_A 206 ---IKAKINANIEQSYVEV------------------------------------------------------------- 221 (367)
T ss_dssp ---EECCSSSSSEEEEEEC-------------------------------------------------------------
T ss_pred ---EEecCCCCceEEEEEe-------------------------------------------------------------
Confidence 0000000000 00000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
....|+..|..++. ..+.++||||+....++.+.++|...|+.+..+||+++.++|.++++.|+
T Consensus 222 -------------~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 285 (367)
T 1hv8_A 222 -------------NENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK 285 (367)
T ss_dssp -------------CGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHH
T ss_pred -------------ChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 01124444444333 56789999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++... +|++|+++++|||++++++||+||++||+..+.|++||++|.|+...+.++..
T Consensus 286 ~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 286 QKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp TTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred cCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 75443 78999999999999999999999999999999999999999998887766653
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=312.08 Aligned_cols=316 Identities=19% Similarity=0.228 Sum_probs=214.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
..+++||.+++.+++. +.++|++.+||+|||++++..+...+......+.+|||||+. |+.||..++.+++. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 3799999999998886 677999999999999998887776654344567899999976 88999999999874 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|....... ........++|+|+|++.+..... .+....|++|||||||++.+. ...+...+..+. ..
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 137 ASCHACIGGTNVRAE-VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CCEEECCCCTTHHHH-HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred ceEEEEECCcchHHH-HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 555566665544333 233444678999999999876543 344556899999999998543 345555666664 44
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+.++|||||-. ++..++.. ++..+........
T Consensus 216 ~~i~~SAT~~~----~~~~~~~~--------------~~~~~~~~~~~~~------------------------------ 247 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTKK--------------FMRDPIRILVKKE------------------------------ 247 (414)
T ss_dssp EEEEECSCCCH----HHHHHHTT--------------TCSSCEEECCCCC------------------------------
T ss_pred eEEEEEEecCH----HHHHHHHH--------------HcCCCEEEEecCC------------------------------
Confidence 57889999821 11111110 0111100000000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
. ..++...... ..
T Consensus 248 ---~--~~~~~~~~~~--------------------------------------------------------------~~ 260 (414)
T 3eiq_A 248 ---E--LTLEGIRQFY--------------------------------------------------------------IN 260 (414)
T ss_dssp ---C--CCTTSCCEEE--------------------------------------------------------------EE
T ss_pred ---c--cCCCCceEEE--------------------------------------------------------------EE
Confidence 0 0000000000 00
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
......|+..|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 261 -----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 261 -----------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp -----------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS
T ss_pred -----------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH
Confidence 001123666777766643 4679999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++... +|++|+++++|||++++++||+||++||+..|.||+||++|.|+...+.+++
T Consensus 328 ~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 384 (414)
T 3eiq_A 328 SGSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV 384 (414)
T ss_dssp CC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEE
T ss_pred cCCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEE
Confidence 64433 6999999999999999999999999999999999999999999887665554
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=299.69 Aligned_cols=313 Identities=16% Similarity=0.175 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||+. |+.||..++.++.. .+
T Consensus 27 ~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp SCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 7999999999988752 2378899999999999998887776554344566899999977 88999999999874 34
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChh---hHHHHHhhccc-cc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~---SKlskaLk~Lk-a~ 1150 (2239)
.+..+.+..... ......+|+|+|++.+.... ..+...+|++|||||||++.+.. ......+..+. ..
T Consensus 105 ~~~~~~~~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 178 (395)
T 3pey_A 105 TSQLIVPDSFEK------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 178 (395)
T ss_dssp CEEEESTTSSCT------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTC
T ss_pred eEEEEecCchhh------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCc
Confidence 555555543322 12346899999999997653 23445579999999999986422 22222333333 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
..++|||||-. .+..++..+ +..+.....
T Consensus 179 ~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~--------------------------------- 207 (395)
T 3pey_A 179 QLVLFSATFAD----AVRQYAKKI--------------VPNANTLEL--------------------------------- 207 (395)
T ss_dssp EEEEEESCCCH----HHHHHHHHH--------------SCSCEEECC---------------------------------
T ss_pred EEEEEEecCCH----HHHHHHHHh--------------CCCCeEEEc---------------------------------
Confidence 67899999731 111111111 000000000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
... ....+......+.+..
T Consensus 208 ~~~--~~~~~~~~~~~~~~~~----------------------------------------------------------- 226 (395)
T 3pey_A 208 QTN--EVNVDAIKQLYMDCKN----------------------------------------------------------- 226 (395)
T ss_dssp CGG--GCSCTTEEEEEEECSS-----------------------------------------------------------
T ss_pred ccc--ccccccccEEEEEcCc-----------------------------------------------------------
Confidence 000 0001111111111100
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
...|+..|..++... .+.++||||+....++.+..+|...++.+..+||+++.++|.++++.|+
T Consensus 227 --------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 227 --------------EADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp --------------HHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 011333333333322 4679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCC------CcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW------NP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
++... +|++|+++++|||++++++||+||+|| |+..+.|++||++|.|++..+.++..
T Consensus 291 ~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 291 EGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp TTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred CCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 75444 799999999999999999999999999 99999999999999998877766654
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=307.44 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=221.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-----~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
+++|+|.+++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999998875 778999999999999998887766554332 245789999986 8899999999998
Q ss_pred C--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1074 P--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1074 P--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
. .+.+.+++|+.....+.. ......+|+|+|++.+..... .+...++++|||||||++.+. ...+.+.+..+
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~--~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNE--CITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHH--HHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCT
T ss_pred ccCCcEEEEEECCCCHHHHHH--HhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhc
Confidence 5 456666666654433321 223478999999999976532 334457899999999999764 33444555443
Q ss_pred ---ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000101 1148 ---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1224 (2239)
Q Consensus 1148 ---ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLr 1224 (2239)
.....+++|||+- .++..+.... +..+....
T Consensus 232 ~~~~~~q~l~~SAT~~----~~~~~~~~~~--------------l~~~~~i~---------------------------- 265 (434)
T 2db3_A 232 TMRPEHQTLMFSATFP----EEIQRMAGEF--------------LKNYVFVA---------------------------- 265 (434)
T ss_dssp TSCSSCEEEEEESCCC----HHHHHHHHTT--------------CSSCEEEE----------------------------
T ss_pred CCCCCceEEEEeccCC----HHHHHHHHHh--------------ccCCEEEE----------------------------
Confidence 3456888999962 1121111100 00000000
Q ss_pred hHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000101 1225 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1304 (2239)
Q Consensus 1225 PFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiC 1304 (2239)
...+..........++.|
T Consensus 266 -------~~~~~~~~~~i~~~~~~~------------------------------------------------------- 283 (434)
T 2db3_A 266 -------IGIVGGACSDVKQTIYEV------------------------------------------------------- 283 (434)
T ss_dssp -------ESSTTCCCTTEEEEEEEC-------------------------------------------------------
T ss_pred -------eccccccccccceEEEEe-------------------------------------------------------
Confidence 000000000001111111
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHH
Q 000101 1305 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1384 (2239)
Q Consensus 1305 nHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqe 1384 (2239)
....|...|..+|.. .+.++||||+....++.|.++|...|+.+..+||+++..+|..
T Consensus 284 -------------------~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 284 -------------------NKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp -------------------CGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 011244445444443 3456999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1385 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1385 iL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++.|+++... +|++|+++++|||++++++||+||+||++..|.||+||++|.|++..+.+|+
T Consensus 342 ~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 342 ALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 99999975444 7999999999999999999999999999999999999999999887766654
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=293.41 Aligned_cols=298 Identities=17% Similarity=0.190 Sum_probs=208.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
+|+|||.+++.+++. +.++|++++||+|||++++.++... ..++|||||.. |+.||..++.+|.+. +
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999885 6789999999999999887766542 45799999975 889999999999754 5
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccChh--hHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~~--SKlskaLk~Lka~-r 1151 (2239)
.+..+.|......... .....+|+|+||+.+..... .+...+|++|||||||++.+.. ..+...+..+... .
T Consensus 86 ~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQIN---RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKI 162 (337)
T ss_dssp CEEEECTTSCHHHHHH---HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSE
T ss_pred cEEEEECCcchHHHHh---hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccE
Confidence 6666777654433221 12358999999999986532 3344578999999999986533 3334444445444 4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.+++||||-.. +..+ +..++..+.... .
T Consensus 163 ~~~~SAT~~~~----~~~~--------------~~~~~~~~~~~~----------------------------~------ 190 (337)
T 2z0m_A 163 TGLFSATIPEE----IRKV--------------VKDFITNYEEIE----------------------------A------ 190 (337)
T ss_dssp EEEEESCCCHH----HHHH--------------HHHHSCSCEEEE----------------------------C------
T ss_pred EEEEeCcCCHH----HHHH--------------HHHhcCCceeee----------------------------c------
Confidence 56789998321 1111 111111100000 0
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
...++......+.+... .
T Consensus 191 ----~~~~~~~~~~~~~~~~~--~-------------------------------------------------------- 208 (337)
T 2z0m_A 191 ----CIGLANVEHKFVHVKDD--W-------------------------------------------------------- 208 (337)
T ss_dssp ----SGGGGGEEEEEEECSSS--S--------------------------------------------------------
T ss_pred ----ccccCCceEEEEEeChH--H--------------------------------------------------------
Confidence 00000001111111000 0
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhc
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1391 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs 1391 (2239)
+ .....+. ...+.++||||+....++.+...|. .+..+||+++..+|.++++.|++
T Consensus 209 ----------------~--~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~ 264 (337)
T 2z0m_A 209 ----------------R--SKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE 264 (337)
T ss_dssp ----------------H--HHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT
T ss_pred ----------------H--HHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc
Confidence 0 0001111 1357899999999999999998886 57889999999999999999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+... +|++|+++++|||++++++||+||+|||+..+.|++||++|.|+...|.+|..
T Consensus 265 ~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 265 GEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 5444 79999999999999999999999999999999999999999999888877765
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=305.50 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=152.5
Q ss_pred CCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc-c--
Q 000101 1239 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-S-- 1315 (2239)
Q Consensus 1239 LP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~-~-- 1315 (2239)
.|++.+++++|.||+.|+.+|+.+.......+ .................+.+.+|+||+|||||+|+...+ .
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999865321111 111111110112335688999999999999999985322 1
Q ss_pred ---ccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcC
Q 000101 1316 ---DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1392 (2239)
Q Consensus 1316 ---~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ 1392 (2239)
....+.+++.||||.+|+++|..+.+.|||||||||++.++|+|++||..+|+.|+|+||++... +.+ ..
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------AN 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cc
Confidence 11245678899999999999999999999999999999999999999999999999999996543 222 12
Q ss_pred CCCccEEEEeccccccccC-----CCcCceEEEcCCCCCcchH-HHhhhhhccc--CCcceEEEEEEeh
Q 000101 1393 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 1453 (2239)
Q Consensus 1393 ds~~~VfLLSTrAGGeGLN-----LqaADtVIifDppWNP~~d-lQAiGRAhRI--GQkKeV~VyrLva 1453 (2239)
++.+++||+ |.+||.|+| |..||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 467888888 568888886 8999999999999999998 9999999999 7899999999987
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=297.84 Aligned_cols=314 Identities=22% Similarity=0.263 Sum_probs=217.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC------------------CCCeEEEechH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN------------------YGPHLIIVPNA 1060 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~------------------~GP~LIVVP~S 1060 (2239)
.+|+|+|.+++..++. +.+.|++.+||+|||++++..+...+...+. ...+|||||+.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 3799999999987765 7789999999999999887766554432221 24689999985
Q ss_pred -HHHHHHHHHHHHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC
Q 000101 1061 -VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1061 -LLsQW~~Ef~KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN 1135 (2239)
|+.||.+++.+|+. .+.+..+.|+........ ......+|+|+|++.+..... .+....+++|||||||++..
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR--DLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH--HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH--HhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 88999999999874 467777777655443322 123468999999999986532 34445789999999999854
Q ss_pred h--hhHHHHHhhc--cc---cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1136 R--ESVLARDLDR--YR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1136 ~--~SKlskaLk~--Lk---a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
. ...+...+.. +. ....++||||+-. ++..++. .++..+......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~---------- 241 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIFLAVG---------- 241 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEEEEEC----------
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEEEEeC----------
Confidence 3 2333344432 22 3457899999721 1111111 111111000000
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCc-eEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHH
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK-VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K-~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
.. ...++. ...++++.
T Consensus 242 -------------------------~~-~~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 242 -------------------------RV-GSTSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp ------------------------------CCSSEEEEEEECC-------------------------------------
T ss_pred -------------------------CC-CCCccCceEEEEEec-------------------------------------
Confidence 00 000111 11111111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1288 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1288 k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
...|...|..++... ..+.++||||+....++.+.++|...|
T Consensus 259 -------------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 259 -------------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp -------------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 112444444444432 347799999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1368 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1368 iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
+.+..+||+++.++|.++++.|+++... +|++|+++++|||++++++||+||+||++..|.|++||++|.|+...+.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 9999999999999999999999975544 7999999999999999999999999999999999999999999876665
Q ss_pred EEE
Q 000101 1448 VIY 1450 (2239)
Q Consensus 1448 Vyr 1450 (2239)
+++
T Consensus 378 ~~~ 380 (417)
T 2i4i_A 378 SFF 380 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=309.72 Aligned_cols=314 Identities=15% Similarity=0.173 Sum_probs=117.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+......+++|||||.. |+.||..++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999999987 678999999999999998777665544334556899999975 88999999999985 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|......... .+ ...+|+|+||+.+..... .+...+|++|||||||++.+ ....+...+..+. ..
T Consensus 118 ~~~~~~~g~~~~~~~~~-~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAE-GL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp CCEEEECSSCCHHHHHH-HH--HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eeEEEEeCCCchHHHHh-hc--CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 66777777655433221 11 267899999999876532 34455799999999999843 3334444444553 45
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
++++|||||-. ++..++ ..++..|+...
T Consensus 195 ~~i~~SAT~~~----~~~~~~--------------~~~~~~~~~~~---------------------------------- 222 (394)
T 1fuu_A 195 QVVLLSATMPN----DVLEVT--------------TKFMRNPVRIL---------------------------------- 222 (394)
T ss_dssp EEEEECSSCCH----HHHHHH--------------HHHCCSCEEEE----------------------------------
T ss_pred eEEEEEEecCH----HHHHHH--------------HHhcCCCeEEE----------------------------------
Confidence 68999999832 111111 11111111000
Q ss_pred hHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000101 1231 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1310 (2239)
Q Consensus 1231 lKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~ 1310 (2239)
+.-.... ...+.. .. ..+
T Consensus 223 ------------------~~~~~~~---~~~~~~-------------------------------~~----~~~------ 240 (394)
T 1fuu_A 223 ------------------VKKDELT---LEGIKQ-------------------------------FY----VNV------ 240 (394)
T ss_dssp ------------------ECC-----------------------------------------------------------
T ss_pred ------------------ecCcccc---CCCceE-------------------------------EE----EEc------
Confidence 0000000 000000 00 000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHh
Q 000101 1311 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390 (2239)
Q Consensus 1311 ~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FN 1390 (2239)
.....|...|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 241 ------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 306 (394)
T 1fuu_A 241 ------------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 306 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 00001333344444432 3568999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1391 s~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++... +|++|+++++|||++++++||+||++|++..+.|++||++|.|++..|.++.
T Consensus 307 ~~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 307 SGSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 64433 7899999999999999999999999999999999999999999887766554
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=291.70 Aligned_cols=314 Identities=17% Similarity=0.186 Sum_probs=217.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P 1074 (2239)
.+++|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||+. |+.||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 37999999999888762 3478899999999999998777765554344455899999977 7888988888775 5
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh---hhcccCCceEEEecccccccC---hhhHHHHHhhccc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk 1148 (2239)
.+.+.+..+...... ......+|+|+|++.+.... ..+...+|++|||||||++.. ........+..+.
T Consensus 124 ~~~~~~~~~~~~~~~-----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 124 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp TCCEEEECTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred cceEEEeecCcchhh-----hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 667776666543221 12345789999999997754 234445799999999999853 2223333333343
Q ss_pred -cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1149 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1149 -a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
....++|||||-. +++.++..+ +..+..... .
T Consensus 199 ~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~-----~------------------------ 231 (412)
T 3fht_A 199 RNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIKL-----K------------------------ 231 (412)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEECC-----C------------------------
T ss_pred CCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEee-----c------------------------
Confidence 3467889999732 222211111 111000000 0
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
.....++......+.+..
T Consensus 232 ------~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 249 (412)
T 3fht_A 232 ------REEETLDTIKQYYVLCSS-------------------------------------------------------- 249 (412)
T ss_dssp ------GGGSSCTTEEEEEEECSS--------------------------------------------------------
T ss_pred ------cccccccCceEEEEEcCC--------------------------------------------------------
Confidence 000001111111111110
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
...|+..|..++... .+.++||||+....++.+..+|...++.+..+||+++.++|..+++
T Consensus 250 -----------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 250 -----------------RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp -----------------HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Confidence 011344444444432 4679999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCc------chHHHhhhhhcccCCcceEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP------~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.|+++... +|++|+++++|||++++++||+||+||++ ..|.|++||++|.|+...+.++.
T Consensus 311 ~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 311 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp HHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE
Confidence 99975444 79999999999999999999999999987 59999999999999876665554
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=287.88 Aligned_cols=303 Identities=17% Similarity=0.217 Sum_probs=213.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-sl 1076 (2239)
.+++|||.+++..++. +.+.|++.+||+|||+.++..+..+. ...+.+|||||+. |+.||..+|.+|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 3689999999998875 66889999999999996666655443 4456899999976 88999999999986 77
Q ss_pred ceEEEecchhh--HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC-------------hhhH-H
Q 000101 1077 SCIYYVGAKDQ--RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-------------RESV-L 1140 (2239)
Q Consensus 1077 kvvvy~Gskd~--Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-------------~~SK-l 1140 (2239)
.+..++|.... +......+..+.++|+|+|++.+......+...++++|||||||++.. .... +
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 88888887544 233334455556999999999998776666667899999999998732 2222 3
Q ss_pred HHHhhcc------------ccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000101 1141 ARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1208 (2239)
Q Consensus 1141 skaLk~L------------ka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~ 1208 (2239)
...+..+ .....+++||||....+...+ +...+.... .
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~--~------------ 222 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTV--G------------ 222 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCS--S------------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCc--C------------
Confidence 3333333 344678899996554422111 000000000 0
Q ss_pred HHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHH
Q 000101 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1288 (2239)
Q Consensus 1209 ~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k 1288 (2239)
. ....+......+.
T Consensus 223 -------------------------~-~~~~~~~i~~~~~---------------------------------------- 236 (414)
T 3oiy_A 223 -------------------------R-LVSVARNITHVRI---------------------------------------- 236 (414)
T ss_dssp -------------------------C-CCCCCCSEEEEEE----------------------------------------
T ss_pred -------------------------c-cccccccchheee----------------------------------------
Confidence 0 0000111111100
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCC
Q 000101 1289 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1368 (2239)
Q Consensus 1289 ~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGi 1368 (2239)
...|...|..+|.. .+.++||||+....++.|..+|...|+
T Consensus 237 ------------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 237 ------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ------------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 01233444455544 358999999999999999999999999
Q ss_pred eEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCCC--CCcchHHHhhhhhccc
Q 000101 1369 VYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1369 ky~-RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDpp--WNP~~dlQAiGRAhRI 1440 (2239)
.+. .+||. +|. ++.|+++.. . +|++ |+++++|||+++ +++||+||+| +++..|.|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~--~-vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKI--N-ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSC--S-EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCC--e-EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 99994 444 999997544 4 5666 999999999999 9999999999 9999999999999999
Q ss_pred CCc--ceEEEEEEe
Q 000101 1441 GQK--REVKVIYME 1452 (2239)
Q Consensus 1441 GQk--KeV~VyrLv 1452 (2239)
|.. +...++.++
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 974 344444443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-27 Score=296.09 Aligned_cols=324 Identities=17% Similarity=0.223 Sum_probs=217.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~S-LLsQW~~Ef~Kwa- 1073 (2239)
+|+|||.+++..++. ..+.+.|+...||+|||++++.++...+.... ....+|||||+. |+.||..+|.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999988873 13567799999999999998887776654432 234789999976 8899999999875
Q ss_pred -----CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChh--hHHHHH
Q 000101 1074 -----PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARD 1143 (2239)
Q Consensus 1074 -----Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~--SKlska 1143 (2239)
+.+.+....|....... ...+....++|+|+|++.+...... .....+++|||||||++.+.. ..+...
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~-~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i 199 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAA-MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI 199 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHH-HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred hcccccceEEEEEECCccHHHH-HHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHH
Confidence 44566666666544333 3334445789999999999765432 233468999999999986543 222222
Q ss_pred hhcc---c-----cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000101 1144 LDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1215 (2239)
Q Consensus 1144 Lk~L---k-----a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~li 1215 (2239)
+..+ . ....++||||+-. .+.+ ++..+. ..+...
T Consensus 200 ~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~~l--------------~~~~~~-------------------- 241 (579)
T 3sqw_A 200 SGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANNIM--------------NKKECL-------------------- 241 (579)
T ss_dssp HHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTTTC--------------CSSEEE--------------------
T ss_pred HHHhhhhhcccccCceEEEEeccCCh-HHHH---HHHHHc--------------CCCceE--------------------
Confidence 2222 1 3368999999631 1111 111000 000000
Q ss_pred HHHHHHhhhhHHhhHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHH
Q 000101 1216 IHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1294 (2239)
Q Consensus 1216 i~RLhklLrPFmLRRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~ 1294 (2239)
.+... ............ .++.+.-.
T Consensus 242 -----------~~~~~-~~~~~~~~~~i~~~~~~~~~~------------------------------------------ 267 (579)
T 3sqw_A 242 -----------FLDTV-DKNEPEAHERIDQSVVISEKF------------------------------------------ 267 (579)
T ss_dssp -----------EEESS-CSSSCSSCTTEEEEEEEESST------------------------------------------
T ss_pred -----------EEeec-CccccccccccceEEEEecch------------------------------------------
Confidence 00000 000000000111 11111000
Q ss_pred HHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc---CCe
Q 000101 1295 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QLV 1369 (2239)
Q Consensus 1295 niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r---Gik 1369 (2239)
...+...+..++..+. ..+.++||||.....++.+...|... ++.
T Consensus 268 ------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~ 317 (579)
T 3sqw_A 268 ------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 317 (579)
T ss_dssp ------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSC
T ss_pred ------------------------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCc
Confidence 0001222222232222 35789999999999999999999887 999
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1370 y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+..+||+++..+|..+++.|+.+... |||+|+++++|||++++++||+||+||++..|+|++||++|.|+...+.++
T Consensus 318 v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 318 ILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 99999999999999999999975433 799999999999999999999999999999999999999999987776665
Q ss_pred EE
Q 000101 1450 YM 1451 (2239)
Q Consensus 1450 rL 1451 (2239)
..
T Consensus 395 ~~ 396 (579)
T 3sqw_A 395 IC 396 (579)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=300.20 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=222.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..++|||.+++..++. +.++|+..+||+|||+.++..+.. ..+.+|||+|+. |+.+|...+.++ ++.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~------~~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH------hCCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 3799999999999886 678999999999999877655431 136789999975 888999999986 456
Q ss_pred eEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh---HHHH----Hhhc
Q 000101 1078 CIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLAR----DLDR 1146 (2239)
Q Consensus 1078 vvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S---Klsk----aLk~ 1146 (2239)
+.++.+... .+......+..+.++|+++|++.+... ...+...++.+|||||||.+...+. ..+. .+..
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 666666543 333344456667899999999999643 2345567899999999999965331 1222 2334
Q ss_pred cccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhH
Q 000101 1147 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1226 (2239)
Q Consensus 1147 Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPF 1226 (2239)
+....+++|||||......++...+.+-.|.++.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 45567899999996555555554444322211100 00
Q ss_pred HhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000101 1227 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1306 (2239)
Q Consensus 1227 mLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnH 1306 (2239)
..|.....++.
T Consensus 209 -----------~r~~l~~~v~~---------------------------------------------------------- 219 (523)
T 1oyw_A 209 -----------DRPNIRYMLME---------------------------------------------------------- 219 (523)
T ss_dssp -----------CCTTEEEEEEE----------------------------------------------------------
T ss_pred -----------CCCceEEEEEe----------------------------------------------------------
Confidence 00100000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000101 1307 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1307 P~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL 1386 (2239)
...++..|..+|.. ..+.++||||..+..++.+..+|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 220 ------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp ------------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 01122333333332 2577999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+.|..++.. +|++|.++|+|||++++++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 280 ~~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 280 EKFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 999975544 7999999999999999999999999999999999999999999887776654
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=290.77 Aligned_cols=324 Identities=18% Similarity=0.223 Sum_probs=215.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechH-HHHHHHHHHHHHC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~----~GP~LIVVP~S-LLsQW~~Ef~Kwa- 1073 (2239)
+|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||+. |+.||..+|.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999988873 135678999999999999988877766543321 24789999976 8889999999864
Q ss_pred -----CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccChh--hHHHHH
Q 000101 1074 -----PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLARD 1143 (2239)
Q Consensus 1074 -----Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN~~--SKlska 1143 (2239)
+.+.+..+.|....... ...+.....+|+|+|++.+...... .....+++|||||||++.... ..+...
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i 250 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAA-MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI 250 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHH-HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHH-HHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHH
Confidence 34556666666544333 2334455789999999999765332 223458999999999986542 222222
Q ss_pred hhcc---c-----cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000101 1144 LDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1215 (2239)
Q Consensus 1144 Lk~L---k-----a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~li 1215 (2239)
+..+ . ....++||||+-. .+. .++..+.. .+...
T Consensus 251 ~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~---~~~~~~~~--------------~~~~~-------------------- 292 (563)
T 3i5x_A 251 SGILNEKNSKSADNIKTLLFSATLDD-KVQ---KLANNIMN--------------KKECL-------------------- 292 (563)
T ss_dssp HHHHHHHCSSCTTCCEEEEEESSCCT-HHH---HHTTTTCC--------------SSEEE--------------------
T ss_pred HHhhhhccccCccCceEEEEEccCCH-HHH---HHHHHhcC--------------CCceE--------------------
Confidence 2222 1 3358999999732 111 11111000 00000
Q ss_pred HHHHHHhhhhHHhhHhHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHH
Q 000101 1216 IHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 1294 (2239)
Q Consensus 1216 i~RLhklLrPFmLRRlKkDVekdLP~K~e-~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~ 1294 (2239)
.+.. ............. .++.+... .
T Consensus 293 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~--~--------------------------------------- 319 (563)
T 3i5x_A 293 -----------FLDT-VDKNEPEAHERIDQSVVISEKF--A--------------------------------------- 319 (563)
T ss_dssp -----------EEES-SCSSSCSSCTTEEEEEEEESST--T---------------------------------------
T ss_pred -----------EEec-cCCCCccccccCceEEEECchh--H---------------------------------------
Confidence 0000 0000000000111 11111000 0
Q ss_pred HHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHc---CCe
Q 000101 1295 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QLV 1369 (2239)
Q Consensus 1295 niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~r---Gik 1369 (2239)
......+..++..+. ..+.++||||.....++.+..+|... ++.
T Consensus 320 -------------------------------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 368 (563)
T 3i5x_A 320 -------------------------------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 368 (563)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred -------------------------------hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCce
Confidence 001111222222222 45789999999999999999999887 999
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1370 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1370 y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+..+||+++..+|..+++.|+.+... |||+|+++++|||++++++||+||+|+++..|+|++||++|.|+...+.++
T Consensus 369 v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 369 ILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 99999999999999999999975443 799999999999999999999999999999999999999999987766665
Q ss_pred EE
Q 000101 1450 YM 1451 (2239)
Q Consensus 1450 rL 1451 (2239)
..
T Consensus 446 ~~ 447 (563)
T 3i5x_A 446 IC 447 (563)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=295.18 Aligned_cols=308 Identities=15% Similarity=0.123 Sum_probs=216.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
..++|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+. |+.||...|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3799999999999886 678999999999999877655532 246899999975 889999999998 667
Q ss_pred eEEEecchhh--HHHHHHHH--hhcCccEEEEehhHHHHh---hh----hcccCCceEEEecccccccChh-------hH
Q 000101 1078 CIYYVGAKDQ--RSRLFSQV--AALKFNVLVTTYEFIMYD---RS----KLSKVDWKYIIIDEAQRMKDRE-------SV 1139 (2239)
Q Consensus 1078 vvvy~Gskd~--Rk~l~~~i--~~~kfdVVITTYE~L~kD---~s----~L~kikWd~VIIDEAHrIKN~~-------SK 1139 (2239)
+.++.|.... +......+ ....++|+|+|++.+... .. .+...++.+|||||||.+.... ..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 7777665432 22333333 356889999999988531 22 2233478999999999986432 12
Q ss_pred HHHHhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000101 1140 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1219 (2239)
Q Consensus 1140 lskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RL 1219 (2239)
+......+....+++|||||-.....++...|.+-.+..+.. .
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~--------------------------- 233 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S--------------------------- 233 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C---------------------------
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C---------------------------
Confidence 222223445667899999985433333333222111100000 0
Q ss_pred HHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000101 1220 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1299 (2239)
Q Consensus 1220 hklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImq 1299 (2239)
...|.....+....
T Consensus 234 -----------------~~r~nl~~~v~~~~------------------------------------------------- 247 (591)
T 2v1x_A 234 -----------------FNRPNLYYEVRQKP------------------------------------------------- 247 (591)
T ss_dssp -----------------CCCTTEEEEEEECC-------------------------------------------------
T ss_pred -----------------CCCcccEEEEEeCC-------------------------------------------------
Confidence 00011111111000
Q ss_pred HHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCC
Q 000101 1300 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1377 (2239)
Q Consensus 1300 LRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGst 1377 (2239)
..+...+..++..+. ..+.++||||..+..++.|..+|...|+.+..+||++
T Consensus 248 --------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l 301 (591)
T 2v1x_A 248 --------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANL 301 (591)
T ss_dssp --------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred --------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 001111222222222 1478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1378 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1378 s~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+.++|..+++.|..++.. ||++|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+++
T Consensus 302 ~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 302 EPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp CHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 999999999999975544 7999999999999999999999999999999999999999999887776664
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=309.15 Aligned_cols=305 Identities=17% Similarity=0.201 Sum_probs=220.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+++|||.+++.+++.....+. ++|++++||+|||++++..+..... ....+|||||+. |+.||..+|.++++.
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 4789999999999998766555 7899999999999998765544432 335899999987 788999999999875
Q ss_pred --CceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcccc-c
Q 000101 1076 --VSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC-Q 1150 (2239)
Q Consensus 1076 --lkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka-~ 1150 (2239)
+.+.++.|. ...+......+..+..+|+|+|++.+.++ +...+|++|||||+|++. ......+..+.. .
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g---~~~~~~l~~l~~~~ 752 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFG---VRHKERIKAMRANV 752 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSC---HHHHHHHHHHHTTS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcC---hHHHHHHHHhcCCC
Confidence 456666653 33445555556677899999999988543 334578999999999974 334455555544 4
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
++|+|||||+.+.+...+. .+..+.+
T Consensus 753 ~vl~lSATp~p~~l~~~~~--~~~~~~~---------------------------------------------------- 778 (1151)
T 2eyq_A 753 DILTLTATPIPRTLNMAMS--GMRDLSI---------------------------------------------------- 778 (1151)
T ss_dssp EEEEEESSCCCHHHHHHHT--TTSEEEE----------------------------------------------------
T ss_pred CEEEEcCCCChhhHHHHHh--cCCCceE----------------------------------------------------
Confidence 6899999997654321110 0000000
Q ss_pred hHhhhhcCCCCce--EEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000101 1231 RVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1308 (2239)
Q Consensus 1231 lKkDVekdLP~K~--e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~ 1308 (2239)
....|... .......
T Consensus 779 -----i~~~~~~r~~i~~~~~~---------------------------------------------------------- 795 (1151)
T 2eyq_A 779 -----IATPPARRLAVKTFVRE---------------------------------------------------------- 795 (1151)
T ss_dssp -----CCCCCCBCBCEEEEEEE----------------------------------------------------------
T ss_pred -----EecCCCCccccEEEEec----------------------------------------------------------
Confidence 00000000 0000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHH
Q 000101 1309 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAI 1386 (2239)
Q Consensus 1309 L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL 1386 (2239)
..+..++..++..+ ..+.+|||||+.+..++.+.+.|... ++.+..+||.++..+|.+++
T Consensus 796 -----------------~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il 857 (1151)
T 2eyq_A 796 -----------------YDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 857 (1151)
T ss_dssp -----------------CCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 00112222333333 35789999999999999999999887 88999999999999999999
Q ss_pred HHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC-CCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1387 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP-DPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1387 ~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp-pWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++|+++..+ |||+|+++++|||++++++||++++ .|++..+.|++||++|.|+...|.+++
T Consensus 858 ~~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 858 NDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp HHHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred HHHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 999975444 7999999999999999999999999 599999999999999999776665543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-27 Score=288.93 Aligned_cols=314 Identities=18% Similarity=0.218 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kw---aP 1074 (2239)
..++|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||+. |+.||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3799999999998875 23467899999999999998777665543333444799999987 778887766655 46
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccC---hhhHHHHHhhccc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk 1148 (2239)
.+.+.+..+...... ......+|+|+|++.+..... .+...++.+|||||||++.. ........+..+.
T Consensus 191 ~~~~~~~~~~~~~~~-----~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~ 265 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (479)
T ss_dssp TCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC
T ss_pred CceEEEEeCCccccc-----cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC
Confidence 677777766543211 122356899999999977542 34445789999999999853 2223333333443
Q ss_pred -cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHH
Q 000101 1149 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1227 (2239)
Q Consensus 1149 -a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFm 1227 (2239)
....+++||||-. +++.+...+.
T Consensus 266 ~~~~~i~~SAT~~~----~~~~~~~~~~---------------------------------------------------- 289 (479)
T 3fmp_B 266 RNCQMLLFSATFED----SVWKFAQKVV---------------------------------------------------- 289 (479)
T ss_dssp TTSEEEEEESCCCH----HHHHHHHHHS----------------------------------------------------
T ss_pred ccceEEEEeCCCCH----HHHHHHHHHc----------------------------------------------------
Confidence 3457889999831 2222211111
Q ss_pred hhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000101 1228 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1307 (2239)
Q Consensus 1228 LRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP 1307 (2239)
|......+. ...... ..+ .+.-..|+
T Consensus 290 ------------~~~~~i~~~----~~~~~~-~~~-----------------------------------~~~~~~~~-- 315 (479)
T 3fmp_B 290 ------------PDPNVIKLK----REEETL-DTI-----------------------------------KQYYVLCS-- 315 (479)
T ss_dssp ------------SSEEEEEEC-----------------------------------------------------------
T ss_pred ------------CCCeEEecc----ccccCc-CCc-----------------------------------eEEEEEeC--
Confidence 111100000 000000 000 00000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000101 1308 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387 (2239)
Q Consensus 1308 ~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~ 1387 (2239)
....|+..|..++... .+.++||||+....++.|...|...++.+..+||+++..+|..+++
T Consensus 316 ----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~ 377 (479)
T 3fmp_B 316 ----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 377 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHH
Confidence 0011333333333322 3468999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCc------chHHHhhhhhcccCCcceEEEEE
Q 000101 1388 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1388 ~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP------~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
.|+++... +||+|+++++|||++++++||+||+||++ ..|.|++||++|.|....+.+++
T Consensus 378 ~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 378 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99975544 79999999999999999999999999876 69999999999999776665544
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=291.24 Aligned_cols=307 Identities=18% Similarity=0.221 Sum_probs=210.0
Q ss_pred CChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-- 1074 (2239)
+|+++|.+++..+......+ .+.||+.+||+|||++++..+...+.. ...+|||||+. |+.||..+|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998765443 478999999999999998888776642 25799999986 78899999999986
Q ss_pred CCceEEEecchh--hHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc-cccce
Q 000101 1075 SVSCIYYVGAKD--QRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQR 1151 (2239)
Q Consensus 1075 slkvvvy~Gskd--~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lka~r 1151 (2239)
++.+.+++|... .+......+..+..+|+|+|++.+... +...++++|||||+|++.... ...+.. ....+
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~~ 518 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMVD 518 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCCC
Confidence 577888887643 344455556667899999999988543 334578999999999983211 111222 23457
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.|+|||||+...+... .+-...
T Consensus 519 vL~mSATp~p~tl~~~----~~g~~~------------------------------------------------------ 540 (780)
T 1gm5_A 519 TLVMSATPIPRSMALA----FYGDLD------------------------------------------------------ 540 (780)
T ss_dssp EEEEESSCCCHHHHHH----HTCCSS------------------------------------------------------
T ss_pred EEEEeCCCCHHHHHHH----HhCCcc------------------------------------------------------
Confidence 8999999965432211 000000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000101 1232 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1311 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~ 1311 (2239)
-.+...+|+....+.....
T Consensus 541 -~s~i~~~p~~r~~i~~~~~------------------------------------------------------------ 559 (780)
T 1gm5_A 541 -VTVIDEMPPGRKEVQTMLV------------------------------------------------------------ 559 (780)
T ss_dssp -CEEECCCCSSCCCCEECCC------------------------------------------------------------
T ss_pred -eeeeeccCCCCcceEEEEe------------------------------------------------------------
Confidence 0001112221100000000
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHH--------HHHHHHHHHHH---cCCeEEeecCCCCHH
Q 000101 1312 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW---RQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1312 p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~--------~LDILed~L~~---rGiky~RLDGsts~e 1380 (2239)
...+...+...+.+....+++++|||.... .++.+.+.|.. .++.+..+||+++.+
T Consensus 560 -------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~ 626 (780)
T 1gm5_A 560 -------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQE 626 (780)
T ss_dssp -------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCS
T ss_pred -------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHH
Confidence 000111122233333455778888887543 35667777776 478899999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCC-CcchHHHhhhhhcccCCcceEEEEE
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppW-NP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+|..+++.|++++.+ +||+|+++++|||++++++||++|+++ +...+.|++||++|.|+...|.+++
T Consensus 627 eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 627 EKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp CSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 999999999975544 699999999999999999999999994 7899999999999999887765543
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=281.85 Aligned_cols=347 Identities=17% Similarity=0.099 Sum_probs=215.7
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
+.+|+|||.+++.++.. +.+.|++.+||+|||+++...+...+. ..+.+|||+|+. |..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 35899999999999876 678999999999999998766665553 236899999974 88999999999987
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk-a~r 1151 (2239)
.+.++.|.... ....+|+|+|++.+..... .....+|++|||||+|++.+. ...+...+..++ ..+
T Consensus 155 ~vglltGd~~~---------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 DVGLMTGDITI---------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp CEEEECSSCEE---------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred CEEEEeCCCcc---------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 56667776432 1357899999999875432 223347899999999999764 333444455554 356
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.|+||||+ .| ..+ |.+|+...... +..+
T Consensus 226 il~LSATi-~n-~~e------------------~a~~l~~~~~~-----------------------------~~~v--- 253 (1010)
T 2xgj_A 226 YVFLSATI-PN-AME------------------FAEWICKIHSQ-----------------------------PCHI--- 253 (1010)
T ss_dssp EEEEECCC-TT-HHH------------------HHHHHHHHHTS-----------------------------CEEE---
T ss_pred EEEEcCCC-CC-HHH------------------HHHHHHhhcCC-----------------------------CeEE---
Confidence 78999995 22 223 33333210000 0000
Q ss_pred HhhhhcCCCCceEEEEEecc--------C---HHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000101 1232 VEDVEGSLPPKVSIVLRCRM--------S---AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1300 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c~M--------S---~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqL 1300 (2239)
.....-|......++..- . .....-|..........
T Consensus 254 --i~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------- 300 (1010)
T 2xgj_A 254 --VYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ------------------------------- 300 (1010)
T ss_dssp --EEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------------------------------
T ss_pred --EecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh-------------------------------
Confidence 000001111111111100 0 00000011000000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhc-cc-HHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHHHHHcCCe--------
Q 000101 1301 RKTCNHPLLNYPYFSDLSKDFLVKS-CG-KLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV-------- 1369 (2239)
Q Consensus 1301 RKiCnHP~L~~p~~~~~s~d~Li~~-SG-KLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~L~~rGik-------- 1369 (2239)
....+.-..+ ............ .+ ....+..++..+... +.++||||.....++.+...|...++.
T Consensus 301 --~~~~~~~~~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 301 --IGDDPNSTDS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred --hccccccccc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 0000000000 000000000000 00 022334444444443 458999999999999999888764442
Q ss_pred -------------------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE
Q 000101 1370 -------------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1418 (2239)
Q Consensus 1370 -------------------------------y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV 1418 (2239)
+..+||+++..+|..+++.|+++... +|++|.++++|||++++++|
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEE
Confidence 67799999999999999999975544 79999999999999999999
Q ss_pred EE----cCC----CCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1419 II----YDP----DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1419 Ii----fDp----pWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|. ||. ||++..|.|++|||+|.|+.....+|.+..
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 99 999 999999999999999999976666666654
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-25 Score=263.77 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=153.8
Q ss_pred CCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC----------CCCccccCCcccc
Q 000101 1727 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ----------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~----------~~Sw~~~~~~~~d 1794 (2239)
+||.++.+| .+|++..|||||.+|++||||++ |..+| ++|. ++.++..|+.+ +||+|+ ++
T Consensus 43 ~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~t-I~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~ 114 (311)
T 2r0y_A 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIV-----KN 114 (311)
T ss_dssp HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHH-----HH
T ss_pred cCCchhHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHH-----HH
Confidence 578999999 99999999999999999999999 99999 6666 89999999999 899988 55
Q ss_pred cccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcc
Q 000101 1795 EQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1874 (2239)
Q Consensus 1795 ~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 1874 (2239)
+..|+-.+.+ +|. +
T Consensus 115 A~~l~~~~~~-------------------------------------------------~~~-----------------k 128 (311)
T 2r0y_A 115 SMQVVMLIEF-------------------------------------------------EVL-----------------K 128 (311)
T ss_dssp HHHHHHHHHH-------------------------------------------------HHH-----------------H
T ss_pred HHHHHHHHHH-------------------------------------------------HHh-----------------h
Confidence 5544311111 000 0
Q ss_pred cccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHH-----
Q 000101 1875 SRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKL----- 1949 (2239)
Q Consensus 1875 ~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl----- 1949 (2239)
. ..+ . + .. . . + +..| ..+++.|..|+...
T Consensus 129 ~-k~~--------------~---~-~~-~----i------------------~--~~~k--~~l~~~~~~l~~~~~~~i~ 162 (311)
T 2r0y_A 129 A-KNL--------------K---R-NY-L----I------------------N--SEVK--AKLLHYLNKLVDATEKKIN 162 (311)
T ss_dssp H-HTG--------------G---G-CC-B----C------------------C--HHHH--HHHHHHHHHHHHCCHHHHH
T ss_pred c-ccC--------------C---C-CC-C----C------------------C--hHHH--HHHHHHHHHHHhhhHHHHH
Confidence 0 000 0 0 01 0 0 0 0000 12344455554211
Q ss_pred ---HH-hh---ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 000101 1950 ---QR-RI---EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGF 2022 (2239)
Q Consensus 1950 ---~~-~~---d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~ 2022 (2239)
++ +. ..+||.++..|+.+|++.++||||+| |++||||.+|.+||++++|.++.+|..||.|||.||+.||++
T Consensus 163 ~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~ 241 (311)
T 2r0y_A 163 QALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP 241 (311)
T ss_dssp HHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHhccccccccccCCccHHHHhCCCChhhcccHHHH-hCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 11 11 23578999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCC
Q 000101 2023 SHEVRSEARKVHDLFFDLLKIA-FPDT 2048 (2239)
Q Consensus 2023 ~sev~~dA~~L~~~f~~~~k~~-fP~~ 2048 (2239)
+|.||.+|..|+++|..+|+.. +|+.
T Consensus 242 ~s~i~~~A~~L~~~f~~~~~~~~~p~~ 268 (311)
T 2r0y_A 242 SALIYKDATTLTNYFNYLIQKEFFPEL 268 (311)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999984 6643
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=262.90 Aligned_cols=325 Identities=15% Similarity=0.106 Sum_probs=210.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|+|.+++..+ +..+.+.|++.+||+|||+++..++...+... .+.+|||+|.. |+.+|..++.++.+ ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999863 23478899999999999999977766544322 36899999987 88899999966654 577
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhccccceEE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQRRL 1153 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~rRL 1153 (2239)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..++..+.+
T Consensus 105 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii 179 (715)
T 2va8_A 105 VAMTSGDYDTDDA-----WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLL 179 (715)
T ss_dssp EEECCSCSSSCCG-----GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEE
T ss_pred EEEEeCCCCCchh-----hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEE
Confidence 7777775432221 123789999999988764321 1123679999999999864 233344445566677889
Q ss_pred EecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHh
Q 000101 1154 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1233 (2239)
Q Consensus 1154 LLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKk 1233 (2239)
+||||+- +.. .|.+||..+..... .+
T Consensus 180 ~lSATl~--n~~------------------~~~~~l~~~~~~~~-------------------------~r--------- 205 (715)
T 2va8_A 180 ALSATIS--NYK------------------QIAKWLGAEPVATN-------------------------WR--------- 205 (715)
T ss_dssp EEESCCT--THH------------------HHHHHHTCEEEECC-------------------------CC---------
T ss_pred EEcCCCC--CHH------------------HHHHHhCCCccCCC-------------------------CC---------
Confidence 9999973 123 33334432110000 00
Q ss_pred hhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000101 1234 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1313 (2239)
Q Consensus 1234 DVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~ 1313 (2239)
|-.....+...-... ....+ .+..
T Consensus 206 ------~~~l~~~~~~~~~~~-----------~~~~~---------------------------------------~~~~ 229 (715)
T 2va8_A 206 ------PVPLIEGVIYPERKK-----------KEYNV---------------------------------------IFKD 229 (715)
T ss_dssp ------SSCEEEEEEEECSST-----------TEEEE---------------------------------------EETT
T ss_pred ------CCCceEEEEecCCcc-----------cceee---------------------------------------ecCc
Confidence 000111100000000 00000 0000
Q ss_pred ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC--------------------------
Q 000101 1314 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-------------------------- 1367 (2239)
Q Consensus 1314 ~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG-------------------------- 1367 (2239)
.....+.....++.. +.++...+.++||||.....++.+...|....
T Consensus 230 ---~~~~~~~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 230 ---NTTKKVHGDDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp ---SCEEEEESSSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred ---chhhhcccchHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 000000000112222 22333468899999999999999988887542
Q ss_pred ----------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC-------CCCC
Q 000101 1368 ----------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDPN 1426 (2239)
Q Consensus 1368 ----------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD-------ppWN 1426 (2239)
+.+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|++
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 2477899999999999999999975433 7999999999999999999999 99 8999
Q ss_pred cchHHHhhhhhcccCCcceEEEEEEehh
Q 000101 1427 PKNEEQAVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1427 P~~dlQAiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
+..+.|+.|||+|.|+.+...+|.+.+-
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 9999999999999998877777777653
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-25 Score=265.23 Aligned_cols=212 Identities=13% Similarity=0.126 Sum_probs=158.5
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC-------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~------- 1781 (2239)
....+++.. ...+|.++.+| .+|++..|||||.+|++||||+. |..+| ++|. ++.++..|+.+
T Consensus 82 ~~~~~l~~l-----~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~t-I~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 82 FISFTLDVL-----IDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp HHHHHHHHH-----HHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHH-HHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 344455544 33678899999 99999999999999999999999 99998 5665 79999999999
Q ss_pred ---CCCccccCCcccccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhh
Q 000101 1782 ---SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAH 1858 (2239)
Q Consensus 1782 ---~~Sw~~~~~~~~d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1858 (2239)
+||+|+ .++..|+-.+.+ +|.
T Consensus 154 yN~~~s~i~-----~~a~~l~~~~~~-------------------------------------------------~~~-- 177 (361)
T 2r10_A 154 YNEYDSLIV-----KNSMQVVMLIEF-------------------------------------------------EVL-- 177 (361)
T ss_dssp HBCSSSHHH-----HHHHHHHHHHHH-------------------------------------------------HHH--
T ss_pred cCCCCCHHH-----HHHHHHHHHHHH-------------------------------------------------HHh--
Confidence 899988 665554311111 000
Q ss_pred cCCccccCCCCCCCcccccCCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHH
Q 000101 1859 GESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1938 (2239)
Q Consensus 1859 ~~~~~~~~~q~~~~~~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~m 1938 (2239)
+. ..+ +.. + .. + +. ....+
T Consensus 178 ---------------k~-k~~------------------~~~-~----~i------------------~--~~--~k~~l 196 (361)
T 2r10_A 178 ---------------KA-KNL------------------KRN-Y----LI------------------N--SE--VKAKL 196 (361)
T ss_dssp ---------------HH-HTT------------------TTC-C----BC------------------C--HH--HHHHH
T ss_pred ---------------hc-ccc------------------CCc-C----cC------------------C--HH--HHHHH
Confidence 00 000 000 1 00 0 00 01223
Q ss_pred HHHHHHHHHHHH----Hh--------hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1939 QRRCKNVISKLQ----RR--------IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1939 q~kck~vl~kl~----~~--------~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
++.|..|++... .. ...+||.++..|+.+|++.++||||+| |++||||.+|..||+.++|.++.+|+
T Consensus 197 ~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 275 (361)
T 2r10_A 197 LHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFI 275 (361)
T ss_dssp HHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHH
T ss_pred HHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHH-hcCcccHHHHHHHHhcCCCCCHHHHH
Confidence 344555543211 10 023588999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh-CCCC
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA-FPDT 2048 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~-fP~~ 2048 (2239)
.||.|||.||+.||+++|.||.+|..|+++|..+|+.. +|+.
T Consensus 276 ~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~p~~ 318 (361)
T 2r10_A 276 IDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPEL 318 (361)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999984 6643
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=275.84 Aligned_cols=348 Identities=16% Similarity=0.066 Sum_probs=213.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
.+|+|||.+++..+.. +.+.|++.+||+|||++++..+...+. ..+.+|||+|+. |+.||..+|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 4799999999988754 778999999999999998877776653 345799999976 88899999999987 4
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccCh--hhHHHHHhhcccc-ceE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-QRR 1152 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka-~rR 1152 (2239)
+.++.|.... ....+|+|+|++.|...... ..-.++.+|||||||++.+. ...+...+..+.. .+.
T Consensus 254 VglltGd~~~---------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qv 324 (1108)
T 3l9o_A 254 VGLMTGDITI---------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 324 (1108)
T ss_dssp EEEECSSCBC---------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEE
T ss_pred ccEEeCcccc---------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceE
Confidence 5566665432 24689999999998765321 11236899999999999763 2334444445543 457
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
|+|||| +.|. .++..++..+... |....
T Consensus 325 l~lSAT-ipn~-~e~a~~l~~~~~~--------------~~~vi------------------------------------ 352 (1108)
T 3l9o_A 325 VFLSAT-IPNA-MEFAEWICKIHSQ--------------PCHIV------------------------------------ 352 (1108)
T ss_dssp EEEECS-CSSC-HHHHHHHHHHTCS--------------CEEEE------------------------------------
T ss_pred EEEcCC-CCCH-HHHHHHHHhhcCC--------------CeEEE------------------------------------
Confidence 889999 3333 3333333222110 00000
Q ss_pred hhhhcCCCCceEEEEEe-----------ccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000101 1233 EDVEGSLPPKVSIVLRC-----------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c-----------~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLR 1301 (2239)
....-|....+.++. .........|.......... .. .. .... ..+
T Consensus 353 --~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~----~~-----~~------~~~~------~~~ 409 (1108)
T 3l9o_A 353 --YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ----IG-----DD------PNST------DSR 409 (1108)
T ss_dssp --EECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------------
T ss_pred --ecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh----hc-----cc------cccc------ccc
Confidence 000001111111110 00111111111111000000 00 00 0000 000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEEccHHHHHHHHHHHHHcCCe-----------
Q 000101 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV----------- 1369 (2239)
Q Consensus 1302 KiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQ~t~~LDILed~L~~rGik----------- 1369 (2239)
..... .+ . .. .........+..++..+... +.++||||.....++.+...|...++.
T Consensus 410 ~~~~~--~~---~---~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 478 (1108)
T 3l9o_A 410 GKKGQ--TY---K---GG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 478 (1108)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred ccccc--cc---c---cc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 00000 00 0 00 00000133344455555443 469999999999999999888543332
Q ss_pred ----------------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1370 ----------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1370 ----------------------------y~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
+..+||+++..+|..+++.|..+... +|++|+++++|||++++++||++
T Consensus 479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESC
T ss_pred HHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEec
Confidence 67899999999999999999976555 79999999999999999999999
Q ss_pred CCCCCcch--------HHHhhhhhcccCCcceEEEEEEeh
Q 000101 1422 DPDPNPKN--------EEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1422 DppWNP~~--------dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
+.+|++.. |.|++|||+|.|......+|.+..
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred CcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 99887765 999999999999877776766644
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=267.54 Aligned_cols=316 Identities=16% Similarity=0.117 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|||.+++..+.. +.+.|++.+||+|||+++...+...+. ..+.+|||+|.. |+.+|..++.+|.+ ++.
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 799999999998553 778999999999999999776665543 246899999987 88999999976654 577
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhcc----cc
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY----RC 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L----ka 1149 (2239)
+..+.|....... .....+|+|+|++.+...... ..-.++.+|||||+|.+.+ ....+...+..+ ..
T Consensus 98 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 98 IGISTGDYESRDE-----HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp EEEECSSCBCCSS-----CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCCCCcchh-----hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 7788876433221 123789999999998654322 1123678999999999865 333333333333 34
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhh
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1229 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLR 1229 (2239)
.+.++||||+- +.. .|.+||..+.....
T Consensus 173 ~~ii~lSATl~--n~~------------------~~~~~l~~~~~~~~-------------------------------- 200 (702)
T 2p6r_A 173 LRVIGLSATAP--NVT------------------EIAEWLDADYYVSD-------------------------------- 200 (702)
T ss_dssp CEEEEEECCCT--THH------------------HHHHHTTCEEEECC--------------------------------
T ss_pred ceEEEECCCcC--CHH------------------HHHHHhCCCcccCC--------------------------------
Confidence 56899999962 233 33344432211000
Q ss_pred HhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000101 1230 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1309 (2239)
Q Consensus 1230 RlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L 1309 (2239)
.-|-.....+...- ....... .. .
T Consensus 201 --------~r~~~l~~~~~~~~---------------~~~~~~~-~~----~---------------------------- 224 (702)
T 2p6r_A 201 --------WRPVPLVEGVLCEG---------------TLELFDG-AF----S---------------------------- 224 (702)
T ss_dssp --------CCSSCEEEEEECSS---------------EEEEEET-TE----E----------------------------
T ss_pred --------CCCccceEEEeeCC---------------eeeccCc-ch----h----------------------------
Confidence 00111111110000 0000000 00 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-----------------------
Q 000101 1310 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----------------------- 1366 (2239)
Q Consensus 1310 ~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r----------------------- 1366 (2239)
.. ..-.+...+ .++...+.++||||.....++.+...|...
T Consensus 225 ---~~---------~~~~~~~~~----~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 225 ---TS---------RRVKFEELV----EECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp ---EE---------EECCHHHHH----HHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ---hh---------hhhhHHHHH----HHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 00 000022222 223346889999999999988888877643
Q ss_pred -------CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC---CCCCcchHHH
Q 000101 1367 -------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEEQ 1432 (2239)
Q Consensus 1367 -------Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD---ppWNP~~dlQ 1432 (2239)
++.+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|+++..+.|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Q 365 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQ 365 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHH
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHH
Confidence 12456699999999999999999975444 7999999999999999999999 77 7899999999
Q ss_pred hhhhhcccCCcceEEEEEEehh
Q 000101 1433 AVARAHRIGQKREVKVIYMEAV 1454 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrLvaV 1454 (2239)
++|||+|.|+.+...+|.+.+-
T Consensus 366 r~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 366 MAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHTTBSCTTTCSCEEEEEECCG
T ss_pred HhhhcCCCCCCCCceEEEEecC
Confidence 9999999998877777777653
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=265.19 Aligned_cols=315 Identities=15% Similarity=0.094 Sum_probs=210.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCc
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP-slk 1077 (2239)
+|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. |+.+|..+|.+|.+ ++.
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999862 22377899999999999999865555443322 36899999975 88999999977654 678
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccC--hhhHHHHHhhccc-cceE
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQRR 1152 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~rR 1152 (2239)
+..++|......+ .....+|+|+|++.+...... ..-.++++|||||+|.+.. ....+...+..++ ..++
T Consensus 98 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~i 172 (720)
T 2zj8_A 98 VAMATGDYDSKDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQI 172 (720)
T ss_dssp EEEECSCSSCCCG-----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEE
T ss_pred EEEecCCCCcccc-----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeE
Confidence 8888886432221 124789999999998654321 1123679999999999964 3333444444554 4678
Q ss_pred EEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhH
Q 000101 1153 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1232 (2239)
Q Consensus 1153 LLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlK 1232 (2239)
++||||+- +.. .|.+||..+....
T Consensus 173 i~lSATl~--n~~------------------~~~~~l~~~~~~~------------------------------------ 196 (720)
T 2zj8_A 173 IGLSATIG--NPE------------------ELAEWLNAELIVS------------------------------------ 196 (720)
T ss_dssp EEEECCCS--CHH------------------HHHHHTTEEEEEC------------------------------------
T ss_pred EEEcCCcC--CHH------------------HHHHHhCCcccCC------------------------------------
Confidence 99999962 223 3334432211000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1233 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1233 kDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
..-|-.....+...- ...... ..
T Consensus 197 ----~~rp~~l~~~~~~~~---------------~~~~~~--------~~------------------------------ 219 (720)
T 2zj8_A 197 ----DWRPVKLRRGVFYQG---------------FVTWED--------GS------------------------------ 219 (720)
T ss_dssp ----CCCSSEEEEEEEETT---------------EEEETT--------SC------------------------------
T ss_pred ----CCCCCcceEEEEeCC---------------eeeccc--------cc------------------------------
Confidence 000111111111000 000000 00
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc------------------C-------
Q 000101 1313 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------Q------- 1367 (2239)
Q Consensus 1313 ~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r------------------G------- 1367 (2239)
. . ....++..+.+ +...++++||||.....++.+...|... +
T Consensus 220 -~-~-------~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 286 (720)
T 2zj8_A 220 -I-D-------RFSSWEELVYD----AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286 (720)
T ss_dssp -E-E-------ECSSTTHHHHH----HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHH
T ss_pred -h-h-------hhhHHHHHHHH----HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccch
Confidence 0 0 00112222222 2346789999999999998888888643 1
Q ss_pred --------CeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE----cC----CCCCcchHH
Q 000101 1368 --------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNEE 1431 (2239)
Q Consensus 1368 --------iky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi----fD----ppWNP~~dl 1431 (2239)
..+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|+++..+.
T Consensus 287 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~ 363 (720)
T 2zj8_A 287 EKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVH 363 (720)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHH
T ss_pred HHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHH
Confidence 2378899999999999999999975444 7999999999999999999998 88 689999999
Q ss_pred HhhhhhcccCCcceEEEEEEeh
Q 000101 1432 QAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1432 QAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|++|||+|.|+.+...+|.+.+
T Consensus 364 Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 364 QMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHhhcCCCCCCCCceEEEEec
Confidence 9999999999877766776655
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=216.92 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=110.8
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1928 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1928 ~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
...+.+.++.++++|+.||+.|.+.+|..||.++..|+.+|++.++||||++ |++||||.+|++||+.++|.++++|..
T Consensus 4 ~~~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~ 82 (123)
T 2dat_A 4 GSSGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLGDLEK 82 (123)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCCCSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHH
Confidence 4455678899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+|||+||+.||+++|.||.+|..|+++|..+++..
T Consensus 83 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 83 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988754
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-22 Score=263.83 Aligned_cols=353 Identities=15% Similarity=0.152 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhhc----------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYN----------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE 1068 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~----------n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~E 1068 (2239)
.|||||..++.+++..+. .+.+||+++.||+|||++++.++ .++...+...++|||||.. |..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999987543 23679999999999999986655 4443233446899999955 88999999
Q ss_pred HHHHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---c-ccCCceEEEecccccccChhhHHHHHh
Q 000101 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---L-SKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1069 f~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L-~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
|..|.+... + +. ..+..+...+.....+|+|||++.|...... + ....+.+||||||||+... ..++.|
T Consensus 350 f~~f~~~~v---~-~~-~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSV---N-GS-ENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQKNL 422 (1038)
T ss_dssp HHTTSTTCS---S-SS-CCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHHHH
T ss_pred HHHhccccc---c-cc-cCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHHHH
Confidence 999987521 1 21 1122333334445789999999999865321 1 1236899999999998532 233334
Q ss_pred -hccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000101 1145 -DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1223 (2239)
Q Consensus 1145 -k~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklL 1223 (2239)
..++...+|+|||||+...-. .+. ......|+.++.... +...+
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~-------------~~~-~~t~~~FG~~i~~Y~---------------------l~~AI 467 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENA-------------LGS-ETTASVFGRELHSYV---------------------ITDAI 467 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTC-------------TTS-CCHHHHHCSEEEEEC---------------------HHHHH
T ss_pred HHhCCcccEEEEeCCccccccc-------------hhh-hHHHHHhCCeeEeec---------------------HHHHH
Confidence 456777899999999764210 000 011122222222110 00000
Q ss_pred hhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000101 1224 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1303 (2239)
Q Consensus 1224 rPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKi 1303 (2239)
.+ ..-+|.. +.+....+. |..+. .+. +.. .+ ..+
T Consensus 468 ---------~d-g~l~p~~---v~y~~v~~~----~~~~~------~e~-d~~------------~~----------~~i 501 (1038)
T 2w00_A 468 ---------RD-EKVLKFK---VDYNDVRPQ----FKSLE------TET-DEK------------KL----------SAA 501 (1038)
T ss_dssp ---------HH-TSSCCEE---EEECCCCGG----GHHHH------TCC-CHH------------HH----------HHT
T ss_pred ---------hC-CCcCCeE---EEEEeccch----hhhcc------ccc-cHH------------HH----------HHH
Confidence 00 0001211 111111110 00000 000 000 00 000
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHH-HHHHHHHHHh---------cCCeEEEEEccHHHHHHHHHHHHHcC------
Q 000101 1304 CNHPLLNYPYFSDLSKDFLVKSCGKLWI-LDRILIKLQR---------TGHRVLLFSTMTKLLDILEEYLQWRQ------ 1367 (2239)
Q Consensus 1304 CnHP~L~~p~~~~~s~d~Li~~SGKLel-LdrIL~kLka---------tGhKVLIFSQ~t~~LDILed~L~~rG------ 1367 (2239)
- +-. ++....++.. +..|+..+.. .+.++||||..+..+..+...|...+
T Consensus 502 ~-~~~-------------~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~ 567 (1038)
T 2w00_A 502 E-NQQ-------------AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANK 567 (1038)
T ss_dssp C-STT-------------TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred H-HHH-------------HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccc
Confidence 0 000 0000112222 2233333321 35689999999999999998887654
Q ss_pred ------CeE-EeecCC----------C----------CH-----------------------------HHHHHHHHHHhc
Q 000101 1368 ------LVY-RRIDGT----------T----------SL-----------------------------EDRESAIVDFNS 1391 (2239)
Q Consensus 1368 ------iky-~RLDGs----------t----------s~-----------------------------eeRqeiL~~FNs 1391 (2239)
+++ +.++|. + +. ..|..++++|.+
T Consensus 568 ~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~ 647 (1038)
T 2w00_A 568 SATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN 647 (1038)
T ss_dssp SSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc
Confidence 444 456653 2 11 148889999997
Q ss_pred CCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCc--ceEEEEEEehhhhhhh
Q 000101 1392 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK--REVKVIYMEAVVDKIS 1459 (2239)
Q Consensus 1392 ~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQk--KeV~VyrLvaVEEkI~ 1459 (2239)
+..+ |||+++.+.+|+|.+.+ .|+++|.|.+.+.++||+||+.|.+.. ....|+.++.+.+.+.
T Consensus 648 g~i~---ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~ 713 (1038)
T 2w00_A 648 QDID---LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTI 713 (1038)
T ss_dssp TSSS---EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHH
T ss_pred CCCe---EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHH
Confidence 5444 68899999999999999 678899999999999999999999864 3477888876555443
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=269.31 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=193.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PS 1075 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa-Ps 1075 (2239)
+.+++|+|..++..++. +.+.|++..||+|||+.++.++..++ ...+.+|||+|+. |+.||...|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999988775 67889999999999997666665554 3456799999977 8899999999976 35
Q ss_pred CceEEEecchhh--HHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChh-------------hH-
Q 000101 1076 VSCIYYVGAKDQ--RSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-------------SV- 1139 (2239)
Q Consensus 1076 lkvvvy~Gskd~--Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~-------------SK- 1139 (2239)
+.+.+++|.... +......+..+.++|+|+|++.+.+....+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 688888887543 34444456666799999999999877666666789999999999864311 11
Q ss_pred HHHHhhccc------------cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000101 1140 LARDLDRYR------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1207 (2239)
Q Consensus 1140 lskaLk~Lk------------a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l 1207 (2239)
+...+..++ ....+++||||....+.+.+ +...+. +...
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~--i~v~----------- 279 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLN--FTVG----------- 279 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTC--CCCC-----------
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhccee--EEec-----------
Confidence 233333332 34678899997555432211 000000 0000
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHH
Q 000101 1208 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1287 (2239)
Q Consensus 1208 ~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~ 1287 (2239)
. ....+...... ++
T Consensus 280 --------------------------~-~~~~~~~i~~~-~~-------------------------------------- 293 (1104)
T 4ddu_A 280 --------------------------R-LVSVARNITHV-RI-------------------------------------- 293 (1104)
T ss_dssp --------------------------B-CCCCCCCEEEE-EE--------------------------------------
T ss_pred --------------------------c-CCCCcCCceeE-EE--------------------------------------
Confidence 0 00000010000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1288 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1288 k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
.+.|...|..+|.. .+.++||||+....++.|..+|...|
T Consensus 294 -------------------------------------~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 294 -------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp -------------------------------------SCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTT
T ss_pred -------------------------------------ecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCC
Confidence 01233444445544 35899999999999999999999999
Q ss_pred CeEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCc-CceEEEcCCCC
Q 000101 1368 LVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDP 1425 (2239)
Q Consensus 1368 iky~-RLDGsts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqa-ADtVIifDppW 1425 (2239)
+.+. .+|| +|.+ ++.|+++..+ +||+ |+++++|||+++ +++||+||+|-
T Consensus 334 ~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 334 FNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9998 9999 3556 9999985544 5777 999999999999 99999999998
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=264.65 Aligned_cols=375 Identities=18% Similarity=0.121 Sum_probs=217.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
+.+|+|||.+++..++. +.+.|++.+||+|||++++..+..+.. ..+.+|||+|+. |+.||..+|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 45899999999988765 678899999999999987766665543 235689999976 8899999999999888
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhcccc-ce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-QR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka-~r 1151 (2239)
.+.+++|.... ....+|+|+|++.+..... .+...++.+|||||||++.+ ....+...+..++. ..
T Consensus 110 ~v~~l~G~~~~---------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 110 NIGLITGDVQI---------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp CEEEECSSCEE---------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred eEEEEeCCCcc---------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 88888887542 2457999999999976532 22234789999999999865 33445555666654 46
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHh
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRl 1231 (2239)
.++|||||- +. ..|.+|+....... + +++
T Consensus 181 iIlLSAT~~--n~------------------~ef~~~l~~~~~~~--------------------------~--~vi--- 209 (997)
T 4a4z_A 181 FILLSATVP--NT------------------YEFANWIGRTKQKN--------------------------I--YVI--- 209 (997)
T ss_dssp EEEEECCCT--TH------------------HHHHHHHHHHHTCC--------------------------E--EEE---
T ss_pred EEEEcCCCC--Ch------------------HHHHHHHhcccCCc--------------------------e--EEE---
Confidence 788999962 12 23444442100000 0 000
Q ss_pred HhhhhcCCCCceEEEEEe---------ccCHHHHHHHHHHHHh----cCcccCchh--HHhhhhcChhhH---HHHH---
Q 000101 1232 VEDVEGSLPPKVSIVLRC---------RMSAIQSAIYDWIKAT----GTLRVDPED--EKRRVQKNPIYQ---AKVY--- 1290 (2239)
Q Consensus 1232 KkDVekdLP~K~e~VV~c---------~MS~~Qr~LY~~I~~~----~~l~l~~~~--ek~~l~k~~~~~---~k~~--- 1290 (2239)
.....|...++.++. .........|...... ......... .+.......... .+..
T Consensus 210 ---~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~ 286 (997)
T 4a4z_A 210 ---STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGG 286 (997)
T ss_dssp ---ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------
T ss_pred ---ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 000011111111110 0000111111111100 000000000 000000000000 0000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccchhhHh---hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcC
Q 000101 1291 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLV---KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1367 (2239)
Q Consensus 1291 ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li---~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rG 1367 (2239)
..-...-..-+..+..+.. .......+.. ....++..|..+|.. ....++||||.....++.+..+|...+
T Consensus 287 ~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~ 360 (997)
T 4a4z_A 287 RGNSTRGGANRGGSRGAGA----IGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGIN 360 (997)
T ss_dssp ----------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCC
T ss_pred ccccccccccccccccccc----ccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCC
Confidence 0000000000000000000 0000000000 112234444444433 235799999999999999999987655
Q ss_pred C---------------------------------------eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000101 1368 L---------------------------------------VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1368 i---------------------------------------ky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGe 1408 (2239)
+ .+..+||+++..+|..+++.|..+..+ +|++|.++++
T Consensus 361 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~ 437 (997)
T 4a4z_A 361 FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAM 437 (997)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhC
Confidence 5 467899999999999999999975544 7999999999
Q ss_pred ccCCCcCceEEEcCCCC---------CcchHHHhhhhhcccCCcceEEEEEEe
Q 000101 1409 GLNLQSADTVIIYDPDP---------NPKNEEQAVARAHRIGQKREVKVIYME 1452 (2239)
Q Consensus 1409 GLNLqaADtVIifDppW---------NP~~dlQAiGRAhRIGQkKeV~VyrLv 1452 (2239)
|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.+.
T Consensus 438 GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 438 GLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp SCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 999999 7777766655 999999999999999988777777664
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=245.59 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=151.5
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 30 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~l 103 (265)
T 3uv5_A 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 103 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHH
T ss_pred CCchhhhCCCChhhcCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHH-----HHHHHH
Confidence 357889 89999999999999999999999 9999999999999999999998 778777 443332
Q ss_pred cccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcccccC
Q 000101 1799 QPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1878 (2239)
Q Consensus 1799 ~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~ 1878 (2239)
.-...+ .|..+.
T Consensus 104 ~~~~~~-------------------------------------------------~~~~~~------------------- 115 (265)
T 3uv5_A 104 LDLCDE-------------------------------------------------KLKEKE------------------- 115 (265)
T ss_dssp HHHHHH-------------------------------------------------HHHHTH-------------------
T ss_pred HHHHHH-------------------------------------------------HHHHHh-------------------
Confidence 211000 000000
Q ss_pred CCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhhccCCC
Q 000101 1879 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGH 1958 (2239)
Q Consensus 1879 lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr 1958 (2239)
+...... +.++...... -+..|..++..+... .-..+
T Consensus 116 ----------------------------~~~~~~e------k~i~p~~dd~--------~~~~~~~il~~i~~~-~l~~~ 152 (265)
T 3uv5_A 116 ----------------------------DKLARLE------KAINPLLDDD--------DQVAFSFILDNIVTQ-KMMAV 152 (265)
T ss_dssp ----------------------------HHHHHHH------HHHSTTTTCH--------HHHHHHHHHHHHHHH-TTTTS
T ss_pred ----------------------------hhhhhhh------hhhhhccccc--------hhhHHHHHHHHHHHH-HHHhh
Confidence 0001111 2223221111 133455555554322 12456
Q ss_pred cchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000101 1959 QIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2038 (2239)
Q Consensus 1959 ~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~ 2038 (2239)
..+..|+.++++..+||||++ |++||||.+|..||+.+.|.++.+|..||.|||+||+.||+++|.||.+|..|+++|.
T Consensus 153 ~~~~~F~~pv~~~~~pdY~~i-Ik~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~ 231 (265)
T 3uv5_A 153 PDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHhCCCChhHhCcHHHH-hCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 778999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 000101 2039 DLLKIAFP 2046 (2239)
Q Consensus 2039 ~~~k~~fP 2046 (2239)
..++..-.
T Consensus 232 ~~~~~~~~ 239 (265)
T 3uv5_A 232 QTLTEYDE 239 (265)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 99987643
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-23 Score=214.70 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=109.8
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1928 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1928 ~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
.....|+...++++|++||+.|.+.+|.+||.++..|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..
T Consensus 6 ~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~ 84 (124)
T 3mb4_A 6 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKYQDIDSMVE 84 (124)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHH
T ss_pred CCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHH
Confidence 3345578889999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
||.|||.||+.||+++|.+|.+|..|+++|..+++...
T Consensus 85 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 85 DFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998764
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-23 Score=213.09 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
|+....++|++|++.|.+.+|++||.++..|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||+|||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445567999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.||+.||+++|+||.+|..|+++|..+++..+.
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=212.11 Aligned_cols=111 Identities=14% Similarity=0.228 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
+..++++|+++++.|.+.+|++||.++..|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||+|||+
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK-ISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||+.||+++|.+|.+|..|+++|..+++.+.|
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=209.25 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.+++.|+.+++.|.+.+|.+||.++..|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|..||.|||.
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
||+.||+++|.||.+|..|+++|..+++.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-22 Score=237.35 Aligned_cols=197 Identities=12% Similarity=0.138 Sum_probs=148.1
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.+..++..|+.+ ++|+++ ..+..|
T Consensus 63 ~~a~~F~~pV~~~~~pdY~~iIk~PmDL~t-Ik~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~L 136 (292)
T 3aad_A 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 136 (292)
T ss_dssp TTCGGGSSSCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH-----HHHTHH
T ss_pred CcchhhcCCCCchhcccHHHHcCCcCCHHH-HHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH-----HHHHHH
Confidence 457889 88999999999999999999999 9999999999999999999998 888888 555554
Q ss_pred c-ccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCccccc
Q 000101 1799 Q-PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRR 1877 (2239)
Q Consensus 1799 ~-~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r 1877 (2239)
. -+.++-..++. ... +...
T Consensus 137 ~~~~~~~~~~~~~-------------------------------------------~~~-----------------~~e~ 156 (292)
T 3aad_A 137 LDLCDEKLKEKED-------------------------------------------KLA-----------------RLEK 156 (292)
T ss_dssp HHTTTTTGGGSHH-------------------------------------------HHH-----------------HHHH
T ss_pred HHHHHhhhhcchh-------------------------------------------hhh-----------------hhhh
Confidence 4 11111100000 000 0000
Q ss_pred CCCccccCCCCccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhhccCC
Q 000101 1878 NLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEG 1957 (2239)
Q Consensus 1878 ~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kl~~~~d~~G 1957 (2239)
. + +|. ..++ + . -.+...|++++.. .-..
T Consensus 157 ~-----i-~Pl----------------~dd~--~-------------------~----~~~~~~l~~i~~~-----~l~~ 184 (292)
T 3aad_A 157 A-----I-NPL----------------LDDD--D-------------------Q----VAFSFILDNIVTQ-----KMMA 184 (292)
T ss_dssp T-----T-SSS----------------TTCH--H-------------------H----HHHHHHHHHHHHH-----TGGG
T ss_pred c-----c-ccc----------------cccc--h-------------------h----HHHHHHHHHHhhh-----hhhc
Confidence 0 0 000 0000 0 0 0122223444321 1124
Q ss_pred CcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000101 1958 HQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLF 2037 (2239)
Q Consensus 1958 r~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f 2037 (2239)
+..+..|+.+|++.++||||++ |++||||.+|..||+.++|.++.+|..||.|||+||+.||+++|.+|.+|..|+++|
T Consensus 185 ~~~s~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~ 263 (292)
T 3aad_A 185 VPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVC 263 (292)
T ss_dssp STTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred CcchhHHHhcccccccccHHHH-cCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 000101 2038 FDLLKIAF 2045 (2239)
Q Consensus 2038 ~~~~k~~f 2045 (2239)
.+.++..-
T Consensus 264 ~~~~~~~~ 271 (292)
T 3aad_A 264 YQTLTEYD 271 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998753
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=211.30 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIE-KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d-~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
..-...|+.+++.|....+ ..||.++.+|+.+|.+.++||||++ |++||||.+|.+||+.++|.++.+|..||.|||.
T Consensus 23 ~~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 23 NIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI-ILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3446679999999998885 6799999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC--CCCchHHhh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAF--PDTDFREAR 2054 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f--P~~df~~a~ 2054 (2239)
||+.||+++|.||.+|..|+++|..+++..+ ||.|+....
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~~~~p 143 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASP 143 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhhcCCc
Confidence 9999999999999999999999999999999 577765543
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-21 Score=204.88 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=107.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
..-.+.|.+.|+.|+..|.+.+|..||.++..|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|..||.|
T Consensus 12 ~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~i-Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (130)
T 3k2j_A 12 DLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ-IKMPISLQQIRTKLKNQEYETLDHLECDLNL 90 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344578888999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.||+.||+++|.||++|..|+++|..+++..
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=203.28 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=106.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhcc-CCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEK-EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~-~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
-++.++++|+.||+.|....|. .||.++..|+.+|++.++||||.+ |++||||.+|.+||+.++|.++.+|..||.||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3578999999999999988764 899999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|.||+.||+++|.||.+|..|+++|...++....
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999987654
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=252.05 Aligned_cols=269 Identities=18% Similarity=0.248 Sum_probs=172.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
.++ |+|.+++..++. +.+.|++.+||+|||+.++.++..+. .....+|||+|+. |+.|+...|.+++..
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 358 999999988875 67899999999999984444443333 2446899999987 788999999999864
Q ss_pred C----ceEEEecchhhHHH--HHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccc-
Q 000101 1076 V----SCIYYVGAKDQRSR--LFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR- 1148 (2239)
Q Consensus 1076 l----kvvvy~Gskd~Rk~--l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lk- 1148 (2239)
+ .+..++|......+ ....+.. ++|+|+|++.|......|. ++++|||||||++.+....+...+..+.
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCc
Confidence 4 66777776543322 2222332 8999999999988765544 7889999999999775444444443331
Q ss_pred -----------cceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000101 1149 -----------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1217 (2239)
Q Consensus 1149 -----------a~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~ 1217 (2239)
....+++|||.-.. .++. ..|..
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~------------------------------ 237 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFR------------------------------ 237 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHH------------------------------
T ss_pred chhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhh------------------------------
Confidence 12357777775222 0000 00000
Q ss_pred HHHHhhhhHHhhHhHhhhh-cCC-CCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHH
Q 000101 1218 RLHQILEPFMLRRRVEDVE-GSL-PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 1295 (2239)
Q Consensus 1218 RLhklLrPFmLRRlKkDVe-kdL-P~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~n 1295 (2239)
..+ .+ .+. ... +..... .++
T Consensus 238 ---~~~---~i-----~v~~~~~~~~~i~~-~~~---------------------------------------------- 259 (1054)
T 1gku_B 238 ---QLL---NF-----DIGSSRITVRNVED-VAV---------------------------------------------- 259 (1054)
T ss_dssp ---HHH---CC-----CCSCCEECCCCEEE-EEE----------------------------------------------
T ss_pred ---cce---EE-----EccCcccCcCCceE-EEe----------------------------------------------
Confidence 000 00 000 000 000000 000
Q ss_pred HHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecC
Q 000101 1296 RCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1375 (2239)
Q Consensus 1296 iImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDG 1375 (2239)
...|...|..++.. .+.++||||.....++.|..+|... +.+..+||
T Consensus 260 -----------------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg 306 (1054)
T 1gku_B 260 -----------------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTA 306 (1054)
T ss_dssp -----------------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTT
T ss_pred -----------------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEec
Confidence 01122223333332 2678999999999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEe----ccccccccCCCcC-ceEEEcCCC
Q 000101 1376 TTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQSA-DTVIIYDPD 1424 (2239)
Q Consensus 1376 sts~eeRqeiL~~FNs~ds~~~VfLLS----TrAGGeGLNLqaA-DtVIifDpp 1424 (2239)
++ ..+++.|+.+..+ +||+ |+++++|||++++ ++||+||.|
T Consensus 307 ~~-----~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 307 TK-----KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SS-----SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred cH-----HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 97 3788999975444 5666 9999999999996 999999999
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=200.16 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=103.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc--CCCCCHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2009 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~D~ 2009 (2239)
..|++..+++|..||.+|.. |.++..|+. |...++||||++ |++||||.+|++||+. ++|.++++|+.||
T Consensus 15 ~~m~p~~~~~c~~il~~L~~------~~~s~~F~~-Pv~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv 86 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYC------HEMSLAFQD-PVPLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 86 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHT------SGGGGGGSS-CCCTTSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh------CccchhhcC-CCcccCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHH
Confidence 37899999999999999964 568999999 555599999999 9999999999999998 5999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCch
Q 000101 2010 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDF 2050 (2239)
Q Consensus 2010 qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df 2050 (2239)
+|||+||+.||+++|.||.+|..|+++|..+|+..||+.+|
T Consensus 87 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999987
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=196.64 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
.+..+|+.+++|+..|..++|++||.+|+.|+.+|+|+ |+||. ++||||.+|.+||+++.|.++++|..||.|||
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~---k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN---KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT---SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC---CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999 89997 79999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2047 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~ 2047 (2239)
+||+.||+++|+||+||..|+++|..++...+++
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998874
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=190.57 Aligned_cols=113 Identities=11% Similarity=0.136 Sum_probs=103.7
Q ss_pred CccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1927 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1927 s~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
|.++..+.+....++|..||+.|... ..+..|+.+++..++||||++ |++||||.+|..||+.+.|.++++|.
T Consensus 3 s~~k~~~~~~~~~~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~ 75 (117)
T 3g0l_A 3 SVKKPKRDDSKDLALCSMILTEMETH------EDAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQYPNLETFA 75 (117)
T ss_dssp TCCCCCCCCTTHHHHHHHHHHHHHTS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHH
T ss_pred CCcCCCcCCHHHHHHHHHHHHHHHhC------CCchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCCCCHHHHH
Confidence 34455566777778999999999654 468999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.||.|||.||+.||+++|++|.+|..|+++|..+|+..|=
T Consensus 76 ~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 76 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998874
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-18 Score=218.67 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..+|..+...+.+|||||......+.|...|...|+++..|||.+...+|..+...|+. +. |||+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 3468888888888877788999999999999999999999999999999999887777655555543 23 799999
Q ss_pred ccccccCCC--------cCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1405 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1405 AGGeGLNLq--------aADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
++|+|+|+. ...+||+||.|-++..|.|++||++|.|.......
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~ 540 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 540 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEE
Confidence 999999999 78899999999999999999999999998765543
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=186.67 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.+++.|+.|+++|..+ ..+..|+.++++.++||||++ |++||||.+|+.||++++|.++.+|..||+|||.
T Consensus 5 ~~~l~~~~~~il~~l~~~------~~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSH------PSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHS------GGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC------CCchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 578899999999999764 479999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+.||+++|.+|.+|..|+++|..+|+..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999863
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-20 Score=192.19 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2014 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~ 2014 (2239)
++.++++|..||+.|.... .+..|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.
T Consensus 8 ~~~~~~~c~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCE------DSEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFS 80 (123)
T ss_dssp --CHHHHHHHHHHHHHTSG------GGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC------CcHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4678899999999997664 48999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Q 000101 2015 GAMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2053 (2239)
Q Consensus 2015 Na~~yn~~-~sev~~dA~~L~~~f~~~~k~~fP~~df~~a 2053 (2239)
||+.||++ +|.||.+|..|+++|..+++..+| +|.+|
T Consensus 81 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~--~~~~~ 118 (123)
T 3q2e_A 81 NAKAYTPNKRSKIYSMTLRLSALFEEKMKKISS--DFKIG 118 (123)
T ss_dssp HHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHH--HHC--
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 99999996 999999999999999999999997 44443
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=192.55 Aligned_cols=113 Identities=14% Similarity=0.266 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
+.++++|..||+.|.... .+..|+.+++..++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.|
T Consensus 20 ~~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCE------DSEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp STHHHHHHHHHHHHHHSG------GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------CChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 567889999999998764 38999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhccccc
Q 000101 2016 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT 2060 (2239)
Q Consensus 2016 a~~yn~~-~sev~~dA~~L~~~f~~~~k~~fP~~df~~a~~a~~~~ 2060 (2239)
|+.||++ +|.||.+|..|+++|...++..|| +-+.|+.++
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~-----~~~~~~r~~ 133 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS-----DYKSALRFH 133 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTCC-
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhc
Confidence 9999998 999999999999999999999987 445555443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=217.65 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=85.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCce----
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 1417 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADt---- 1417 (2239)
.+.++||||.....++.+.+.|...++.+..+||. +|.++++.|.++... +|++|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999997 588899999986555 799999999999999 555
Q ss_pred -------------EEEcCCCCCcchHHHhhhhhcccCCcceE
Q 000101 1418 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 1446 (2239)
Q Consensus 1418 -------------VIifDppWNP~~dlQAiGRAhRIGQkKeV 1446 (2239)
||++|.+.+...+.|+.||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57889999999999999999999965433
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=221.80 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=86.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
.+.++||||+....++.|...|...|+.+..|||.+. .++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3668999999999999999999999999999999764 5789999875444 7999999999999999 999999
Q ss_pred C--------------------CCCCcchHHHhhhhhcccCC-cceE
Q 000101 1422 D--------------------PDPNPKNEEQAVARAHRIGQ-KREV 1446 (2239)
Q Consensus 1422 D--------------------ppWNP~~dlQAiGRAhRIGQ-kKeV 1446 (2239)
| .|.++..|.|++||++|.|. ...+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~ 304 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 304 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccE
Confidence 9 89999999999999999997 3444
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=186.97 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=101.0
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1929 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1929 ~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
....+++..++..|+.||+.|.. +..+..|+..++ +.++||||++ |++||||.+|.+||+.++|.++.+|+
T Consensus 13 ~~~~r~~~~l~~~~~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~ 85 (127)
T 2oss_A 13 NKPKRQTNQLQYLLRVVLKTLWK------HQFAWPFQQPVDAVKLNLPDYYKI-IKTPMDMGTIKKRLENNYYWNAQECI 85 (127)
T ss_dssp TSCCCCCHHHHHHHHTHHHHHHT------STTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHHHh------CccchhhcCCCChhhccCccHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 34568899999999999999965 457899999966 6799999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
.||.|||+||+.||+++|.+|.+|..|+++|..+|+..-
T Consensus 86 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 86 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999987643
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-17 Score=209.16 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=105.3
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|.+++..+...+..|||||......+.|...|...|+++..|+|.....+|..+...|+. +. |+|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 3568999998888887789999999999999999999999999999999999887777777777774 23 899999
Q ss_pred ccccccCCCcC-------------------------------------ceEEEcCCCCCcchHHHhhhhhcccCCcceEE
Q 000101 1405 AAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1405 AGGeGLNLqaA-------------------------------------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
.+|+|+|+... .+||.||.|-++..|.|++||++|.|......
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999863 69999999999999999999999999776554
Q ss_pred EE
Q 000101 1448 VI 1449 (2239)
Q Consensus 1448 Vy 1449 (2239)
.|
T Consensus 578 ~f 579 (853)
T 2fsf_A 578 FY 579 (853)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-19 Score=185.12 Aligned_cols=102 Identities=11% Similarity=0.171 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
.-++..|+.||++|..+ ..+..|+.+++..++||||++ |++||||.+|..||++++|.++.+|..||+|||.|
T Consensus 6 ~pl~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEK------DTGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp CHHHHHHHHHHHHHHHH------CSSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC------CccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34567999999999875 367899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+.||+++|.+|.+|..|+++|..+|+.+
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 79 CLKYNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=185.18 Aligned_cols=107 Identities=20% Similarity=0.292 Sum_probs=97.9
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhccccc--CCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHH
Q 000101 1933 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIE--TSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQ 2010 (2239)
Q Consensus 1933 kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~--~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~q 2010 (2239)
++++.++ +|..||.+|. ...++.++..|+.+++... +||||++ |++||||.+|..||+.+.|.++.+|..||.
T Consensus 6 ~~~~~l~-~c~~il~~l~---~~~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~ 80 (120)
T 3jvl_A 6 KISEQLK-CCSGILKEMF---AKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREYRDAQEFGADVR 80 (120)
T ss_dssp SSCHHHH-HHHHHHHHHT---SGGGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHH---hCcCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHH
Confidence 5556555 9999999994 4556678999999998888 9999999 999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2011 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2011 LM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|||.||+.||+++|.||.+|..|+++|..+++..
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 81 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999998764
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-19 Score=217.76 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=81.0
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi- 1420 (2239)
.+.++||||.....++.+.+.|...++.+..+|| ++|.++++.|+++... ||++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999975554 799999999999999 999996
Q ss_pred ------------------cCCCCCcchHHHhhhhhcccC-CcceEEEE
Q 000101 1421 ------------------YDPDPNPKNEEQAVARAHRIG-QKREVKVI 1449 (2239)
Q Consensus 1421 ------------------fDppWNP~~dlQAiGRAhRIG-QkKeV~Vy 1449 (2239)
||.|.++..|.|++||++|.| ....+.++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 899999999999999999985 44455444
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-19 Score=182.55 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..+++.|+.||++|.+. ..+..|..++++.++||||++ |++||||.+|..||++++|.++.+|..||.|||+|
T Consensus 7 ~~l~~~l~~il~~L~~~------~~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRK------DPSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp HHHHHHHHHHHHHHHTS------SGGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC------cccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999764 357889999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2048 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~ 2048 (2239)
|+.||+++|.+|.+|..|++.|..+++..+=++
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876543
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=186.85 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=96.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHHhhccCCCCCHHHHH
Q 000101 1929 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2006 (2239)
Q Consensus 1929 ~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2006 (2239)
....++++.++ +|..||+.|.... .+.++..|+.+++ +.++||||++ |++||||.+|..||+.+.|.++.+|.
T Consensus 15 ~k~~~~~~~l~-~c~~il~~L~~~~---~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 89 (130)
T 2ouo_A 15 EKSSKVSEQLK-CCSGILKEMFAKK---HAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREYRDAQEFG 89 (130)
T ss_dssp ----CHHHHHH-HHHHHHHHHTSGG---GHHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCcccHHHHH-HHHHHHHHHHhCC---cchhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 34457777775 8999999996553 2458899999855 4579999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||.|||.||+.||+++|.||.+|..|+++|..+|+..
T Consensus 90 ~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 90 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999998754
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-19 Score=184.05 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
+.|..||++|.. +..+..|+.+|++.++||||++ |++||||.+|..||+.++|.++.+|..||.|||.||+.|
T Consensus 16 ~~~~~il~~l~~------~~~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 16 AAIQNILTELQN------HAAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp HHHHHHHHHHHH------STTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCCchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999965 4688999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+++|.+|.+|..|+++|..+++..
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999864
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-19 Score=190.00 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=101.3
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1930 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1930 ~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
...+++..++..|+.||+.|... ..+..|+.+++.. ++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 25 ~~~r~t~~l~~~~~~il~~l~~~------~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~ 97 (154)
T 4alg_A 25 KPGRVTNQLQYLHKVVMKALWKH------QFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYYWAASECMQ 97 (154)
T ss_dssp -CCCCBHHHHHHHHTHHHHHHTS------TTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhC------cCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHH
Confidence 34589999999999999999664 5799999997766 89999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
||.|||.||+.||+++|.||.+|..|+++|..+++..-+
T Consensus 98 Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999987544
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-19 Score=181.38 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
..++|..||..|....+ +..|+.+++..++||||++ |++||||.+|..||+.+.|.++++|+.||.|||.||+
T Consensus 17 ~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp HHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 34589999999976643 6899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||+++|.+|.+|..|+++|...|.++
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~kh 116 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMKH 116 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998753
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=216.04 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=85.2
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi- 1420 (2239)
.+.++||||.....++.|...|...|+.+..|||. +|.++++.|+++... |||+|+++++|||+++ ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36799999999999999999999999999999995 688899999875444 7999999999999999 99998
Q ss_pred -------------------cCCCCCcchHHHhhhhhcccCC-cceEEEE
Q 000101 1421 -------------------YDPDPNPKNEEQAVARAHRIGQ-KREVKVI 1449 (2239)
Q Consensus 1421 -------------------fDppWNP~~dlQAiGRAhRIGQ-kKeV~Vy 1449 (2239)
||.|.++..|.|++||++|.|. ...+.+|
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 8899999999999999999996 4444333
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=200.74 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs-- 1075 (2239)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++.. ..+++|||||+ .|+.||.++|.+|...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 3568999999999999998888776652 23589999997 5889999999999743
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEE
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1154 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLL 1154 (2239)
..+..+.++..... ......+|+|+||+.+.+....+ ..+|++|||||||++.+. .....+..+ .+.++|+
T Consensus 186 ~~~~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEE
T ss_pred ceEEEEeCCCcchh-----hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEE
Confidence 34445444432211 12246799999999997764322 347899999999999854 555666777 5788999
Q ss_pred ecCCCCCCCHHHHHHHHhhhcC
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLP 1176 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP 1176 (2239)
|||||.. ...+++.++.++.|
T Consensus 258 lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 258 LSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp ECSSCCT-TSTTHHHHHHHHCE
T ss_pred EeCCCCC-cchHHHHHHHhcCC
Confidence 9999964 45788888887765
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=208.54 Aligned_cols=399 Identities=15% Similarity=0.184 Sum_probs=219.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HH---HHHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VL---VNWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LL---sQW~~Ef~Kwa 1073 (2239)
+...+|.|+.|+--++. |.|....||.|||++++..+.... .. ...++||||+. |. .+|...|.+|+
T Consensus 109 G~rP~~VQ~~~ip~Ll~------G~Iaem~TGeGKTLa~~LP~~l~a-L~--g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHL------GNVAEMKTGEGKTLTCVLPAYLNA-LA--GNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp SCCCCHHHHHHHHHHHT------TEEEECCTTSCHHHHTHHHHHHHH-TT--TSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhHhc------CCEEEecCCCccHHHHHHHHHHHH-Hh--CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 33567788888876653 338889999999998766553221 12 24799999988 44 34888888887
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHH----Hhh-----hhcccCCceEEEecccccccChhhHHHHHh
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM----YDR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDL 1144 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~----kD~-----s~L~kikWd~VIIDEAHrIKN~~SKlskaL 1144 (2239)
++.+.++.|+.....+. .....+|+++|++.|. ++. ..+....+.++||||||+|....
T Consensus 180 -GLsv~~i~gg~~~~~r~----~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDe------- 247 (922)
T 1nkt_A 180 -GLQVGVILATMTPDERR----VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDE------- 247 (922)
T ss_dssp -TCCEEECCTTCCHHHHH----HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTG-------
T ss_pred -CCeEEEEeCCCCHHHHH----HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhc-------
Confidence 57776666654322111 1124799999999883 221 23444578999999999875211
Q ss_pred hccccceEEEecCCCCCCCHHHHH----HHHhhhcCcc-c----------CC---hHHHHhhhcCCcccCCCCCCCChhh
Q 000101 1145 DRYRCQRRLLLTGTPLQNDLKELW----SLLNLLLPEV-F----------DN---RKAFHDWFSQPFQKEGPTHNADDDW 1206 (2239)
Q Consensus 1145 k~Lka~rRLLLTGTPIQNnL~ELw----sLLnFLlP~i-F----------~s---~k~F~e~F~kPf~~~g~~~~~e~d~ 1206 (2239)
-+ .-|++||. .... .++| .++..|.++. | -+ .....+.|.. .+. ......
T Consensus 248 --ar--tPLiiSg~-~~~~-~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i--~~L--fsat~~-- 315 (922)
T 1nkt_A 248 --AR--TPLIISGP-ADGA-SNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGI--DNL--YEAANS-- 315 (922)
T ss_dssp --GG--SCEEEEEE-CCCC-HHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTC--SST--TCSTTC--
T ss_pred --Cc--cceeecCC-CCcc-hhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCC--ccc--cCCcch--
Confidence 11 12677773 3333 3343 3333332110 0 00 0001111110 000 000000
Q ss_pred HHHHHHHHHHHHHHHhhhhH-HhhHhHhhhhcCCCCceEEEEEeccCH-------HHHHHHHHHHHhcCcccCchhHHhh
Q 000101 1207 LETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMSA-------IQSAIYDWIKATGTLRVDPEDEKRR 1278 (2239)
Q Consensus 1207 l~~ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~K~e~VV~c~MS~-------~Qr~LY~~I~~~~~l~l~~~~ek~~ 1278 (2239)
...+.+...|+.. ++.+-+..+.. +. +.++--+++. +..-+.+.+.....+.+.... ..
T Consensus 316 -------~l~~~i~~aL~A~~l~~~d~dYiV~---dg-~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~--~T 382 (922)
T 1nkt_A 316 -------PLVSYLNNALKAKELFSRDKDYIVR---DG-EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAEN--QT 382 (922)
T ss_dssp -------CHHHHHHHHHHHHHHCCBTTTEEEC---SS-CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCE--EE
T ss_pred -------hHHHHHHHHHHHHHHhhcccceeee---cC-ceEEEecccCcccCCccccchhhHHHhccccccccccc--cc
Confidence 0112222222221 11222211111 11 1111111111 011122222222122221110 00
Q ss_pred hhcChhhHHHHH----------HHHHHHHHHHHHHcCCCCCCCCCccccch-----hhHhhcccHHHHHHHHHHHHHhcC
Q 000101 1279 VQKNPIYQAKVY----------KTLNNRCMELRKTCNHPLLNYPYFSDLSK-----DFLVKSCGKLWILDRILIKLQRTG 1343 (2239)
Q Consensus 1279 l~k~~~~~~k~~----------ksL~niImqLRKiCnHP~L~~p~~~~~s~-----d~Li~~SGKLelLdrIL~kLkatG 1343 (2239)
+... .++ ..+ ..+......++++.+-..+..|....... -.......|+..|...+..+...+
T Consensus 383 latI-t~Q-nyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~g 460 (922)
T 1nkt_A 383 LATI-TLQ-NYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKG 460 (922)
T ss_dssp EEEE-CHH-HHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred ccee-ehH-HHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcC
Confidence 0000 000 000 00001123455554433333222111100 011233468888888888887889
Q ss_pred CeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC--------
Q 000101 1344 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA-------- 1415 (2239)
Q Consensus 1344 hKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA-------- 1415 (2239)
..|||||......+.|...|...|+++..|+|.....++..+...|+. +. |+|+|+.+|+|+|+...
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATnmAgRGtDI~l~~~~~~~~~ 535 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVATNMAGRGTDIVLGGNVDFLTD 535 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEETTCSTTCCCCTTCCHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecchhhcCccccCCCCHHHHHH
Confidence 999999999999999999999999999999999876666666666664 23 79999999999999964
Q ss_pred --------------------------------------------ceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1416 --------------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1416 --------------------------------------------DtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
.+||.||.|-++..|.|++||++|.|.......|
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ff 613 (922)
T 1nkt_A 536 QRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFY 613 (922)
T ss_dssp HHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEE
T ss_pred HHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEE
Confidence 4999999999999999999999999977655443
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=194.71 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=104.1
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc---CCCCCHHHHH
Q 000101 1930 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELV 2006 (2239)
Q Consensus 1930 ~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~ 2006 (2239)
....|++..+++|+.||..|..+ .++..|+... ..++||||++ |++||||.+|.+||+. +.|.++.+|+
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~~------~~s~~F~~Pv-~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~~Y~s~~~f~ 145 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYCH------ELSIEFQEPV-PASIPNYYKI-IKKPMDLSTVKKKLQKKHSQHYQIPDDFV 145 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTS------TTCGGGSSCC-CTTSTTHHHH-CSSCCCHHHHHHHHSTTSTTCCSSHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHhc------cchhhhhccC-ChhhccHhHH-hCCccCHHHHHHHHhcccCCCcCCHHHHH
Confidence 34579999999999999999754 4678898854 4599999999 9999999999999997 7999999999
Q ss_pred HHHHHHHHhhhhhcC-----------------CCcHHHHHHHHHHHHHHHHHHHhCCCCch
Q 000101 2007 SDVQFMLKGAMQFYG-----------------FSHEVRSEARKVHDLFFDLLKIAFPDTDF 2050 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~-----------------~~sev~~dA~~L~~~f~~~~k~~fP~~df 2050 (2239)
.||.|||.||+.||+ ++|+|+++|..|+.+|..+|+..|||..|
T Consensus 146 ~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~f 206 (207)
T 3u5n_A 146 ADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRTF 206 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999 99999999999999999999999999988
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=183.89 Aligned_cols=106 Identities=14% Similarity=0.243 Sum_probs=98.3
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1933 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1933 kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+ ++..|+.||++|..+ ..+..|+.+++..++||||++ |++||||.+|..||+.+.|.++.+|..||.||
T Consensus 10 ~~~~-l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (135)
T 3rcw_A 10 RLTP-LTVLLRSVLDQLQDK------DPARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGYKNLHEFEEDFDLI 81 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHHT------CTTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHHHhC------CcchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4444 777999999999774 468899999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|.||+.||+++|.+|.+|..|+++|..+++.+--
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 82 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998744
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=218.79 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=87.9
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1420 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi- 1420 (2239)
.+.++||||.....++.+...|...++.+..|||. +|.++++.|.++... |||+|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 57899999999999999999999999999999993 799999999975544 799999999999999 999997
Q ss_pred -------------------cCCCCCcchHHHhhhhhccc-CCcceEEEE
Q 000101 1421 -------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVI 1449 (2239)
Q Consensus 1421 -------------------fDppWNP~~dlQAiGRAhRI-GQkKeV~Vy 1449 (2239)
||.|.++..|.|++||++|. |+...+.+|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 67888899999999999999 555454444
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=188.63 Aligned_cols=107 Identities=21% Similarity=0.367 Sum_probs=99.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhcc--CCCCCHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2009 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~D~ 2009 (2239)
..|++..+++|+.||.+|.... ....|.... ..++||||++ |++||||.+|++||+. +.|.++++|+.||
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~------~s~~F~~Pv-~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv 147 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHE------MSLAFQDPV-PLTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 147 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHST------TCHHHHSCC-CTTSTTHHHH-CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhch------hhhhhcccc-ccCCCchhhh-cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4789999999999999997753 577888754 4679999999 9999999999999998 7999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2010 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2010 qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
.|||.||+.||+++|+||.+|..|+++|..+|+..||
T Consensus 148 ~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 148 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=179.75 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++..|..|+..|... ..+..|..+++..++||||++ |++||||.+|..||+.++|.++.+|..||.|||.||+
T Consensus 14 ~~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 14 IQQLLEHFLRQLQRK------DPHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp HHHHHHHHHHHHHTT------CTTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------CccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 466999999999764 345689999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
.||+++|.+|.+|..|++.|...|..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=177.48 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+.+.|..+|.+|.+ .+..+..|..++... ++||||++ |++||||.+|..||+.+.|.++.+|..||.||
T Consensus 9 ~~el~~~l~~~l~~l~~-----~~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (119)
T 3p1f_A 9 PEELRQALMPTLEALYR-----QDPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHT-----CTTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----hCCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 46788899999999855 346788999987766 89999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|+||+.||+++|.+|.+|..|+++|...++..|.
T Consensus 83 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 83 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=213.15 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceE---
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 1418 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtV--- 1418 (2239)
.+.++||||.....++.|...|...++.+..|||. +|.++++.|+++... +|++|+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 46799999999999999999999999999999994 788899999975544 799999999999997 9988
Q ss_pred -----------------EEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1419 -----------------IIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1419 -----------------IifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
|+||.|-++..|+||+||++|.|..+
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~ 468 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 468 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCC
Confidence 67777888889999999999998643
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=184.98 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=96.9
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHH
Q 000101 1930 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2007 (2239)
Q Consensus 1930 ~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2007 (2239)
.+..+...+.+.|..||.+|... ..+..|..+ |++.++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 14 ~~~p~~~~~~~~~~~il~~L~~~------~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~ 86 (166)
T 3fkm_X 14 LYFQGNKQWYLLANQLILSLSKY------EGGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQYAYPSEFVK 86 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTS------TTGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCCCSHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhC------CCChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 34577889999999999999653 467899999 668899999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCchH
Q 000101 2008 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFR 2051 (2239)
Q Consensus 2008 D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df~ 2051 (2239)
||.|||.||+.||+++|.||.+|..|+++|..+|+..- -.+|.
T Consensus 87 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~-~~~~~ 129 (166)
T 3fkm_X 87 DVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG-YNNFI 129 (166)
T ss_dssp HHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc-ccccc
Confidence 99999999999999999999999999999999998743 33444
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=185.21 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=98.9
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
..|++...++|+.||+.|.. +.++..|+.+++...+||||++ |++||||.+|.+||+++.|.++.+|+.||.|
T Consensus 67 ~~l~~~~~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~l 139 (174)
T 2ri7_A 67 TPLTEKDYEGLKRVLRSLQA------HKMAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYYEKLTEFVADMTK 139 (174)
T ss_dssp SBCCHHHHHHHHHHHHHHHT------SGGGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCBHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh------hhhhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 36888888899999999965 4578899999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
||.||+.||+++|.+|++|..|+++|.++|+.
T Consensus 140 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 140 IFDNCRYYNPSDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=175.00 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=110.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
....|+..|..+|... .+.++||||+....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3456999999998864 577999999999999999999999999999999999999999999999975443 78999
Q ss_pred cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1404 rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++++|||++.+++||+||+|||+..|.|++||++|.|+...+.++.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887765543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-17 Score=211.27 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=91.5
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHH-----------cCCeEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEecccccc
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGR 1408 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~-----------rGiky~RLDGsts~eeRqeiL~~FNs~--ds~~~VfLLSTrAGGe 1408 (2239)
.+.++||||.....++.+...|.. .++.+..+||+++.++|.++++.|... .....-+||+|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998874 588899999999999999999999711 0123447999999999
Q ss_pred ccCCCcCceEEEcCC------------------CCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1409 GLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1409 GLNLqaADtVIifDp------------------pWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|||++++++||.++. |.+...+.||.||++|. ++-.+|+|++
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~ 441 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYT 441 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSC
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEec
Confidence 999999999999777 88999999999999998 2334566654
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-16 Score=215.32 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-C--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-P--S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa-P--s 1075 (2239)
.+.|.|.+++.-+ |+.+.|.+++..||+|||+++...|...+. ....+.+|+|+|.. |+.+-..+|.+.+ + +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 5778999998655 456778999999999999998777766654 33456899999976 6667666765533 3 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcc----cCCceEEEecccccccChhhHH-HHHhhcc---
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKDRESVL-ARDLDRY--- 1147 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrIKN~~SKl-skaLk~L--- 1147 (2239)
+++..+.|......+. ..+.+|+|||++.+........ -.+..+|||||+|.+....... ...+..+
T Consensus 1002 ~~V~~ltGd~~~~~~~-----~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i 1076 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKL-----LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYI 1076 (1724)
T ss_dssp CCEEECCSCHHHHHHH-----HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhh-----cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHH
Confidence 6777777765433222 2357999999998743321111 1256899999999996533222 2222222
Q ss_pred ----c-cceEEEecCC
Q 000101 1148 ----R-CQRRLLLTGT 1158 (2239)
Q Consensus 1148 ----k-a~rRLLLTGT 1158 (2239)
. .-+.++||||
T Consensus 1077 ~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B 1077 SSQIERPIRIVALSSS 1092 (1724)
T ss_dssp HHTTSSCCEEEEEESC
T ss_pred HhhcCCCceEEEEeCC
Confidence 2 3357889999
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=179.78 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
|.+. +..|..+|..+...+ -.++..+..|+.++++..+||||++ |++||||.+|..||+.+.|.++.+|+.||.|||
T Consensus 23 ~~d~-~~~l~~iL~~i~~~k-l~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 23 MDDD-QVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CSHH-HHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHHHHHH-HHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455 557888888875442 4568889999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2045 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~f 2045 (2239)
.||+.||+++|.||.+|..|+++|.+.|+..-
T Consensus 100 ~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 100 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=176.74 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=110.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..+|... .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 456999999988864 567999999999999999999999999999999999999999999999975444 689999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++++|||++.+++||+||+|||+..|.|++||++|.|+...+.++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999887765554
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=173.21 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.+...|+.+++.|... ..+..|+.+|+..++||||++ |++||||.+|..||+.+.|.++.+|..||.|||.||
T Consensus 10 ~l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 10 ELRIFLRNVTHRLAID------KRFRVFTKPVDPDEVPDYVTV-IKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHHTS------GGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC------CccHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4555688888777443 458999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHH----HHHHHHHHHHHHHHHHHhCCCCchHHh
Q 000101 2017 MQFYGFSHEV----RSEARKVHDLFFDLLKIAFPDTDFREA 2053 (2239)
Q Consensus 2017 ~~yn~~~sev----~~dA~~L~~~f~~~~k~~fP~~df~~a 2053 (2239)
+.||+++|++ |.+|+.|++.|..+++..+.. +|...
T Consensus 83 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~-~~~~~ 122 (130)
T 3dai_A 83 LEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE-DFEQL 122 (130)
T ss_dssp HHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 9999999877 899999999999999877653 66543
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=183.49 Aligned_cols=109 Identities=27% Similarity=0.294 Sum_probs=101.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccC--CccChHHHHHhhccC---CCCCHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGN--NILDLRKIDQRVDRL---EYNGVMELV 2006 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~--~PiDL~~I~qri~~~---eY~~v~ef~ 2006 (2239)
.+|++..+++|..||.+|.. |..+..|++.++ |+||.+ |+ +||||.||..||+.+ .|.+++||+
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~------~~~s~pF~~pV~----~~Yy~i-Ik~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~ 139 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFC------HEPCRPLHQLAT----DSTFSL-DQPGGTLDLTLIRARLQEKLSPPYSSPQEFA 139 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHH------STTHHHHHSCSC----CTTCSS-SCSSCCCCHHHHHHHHHTSSSSCCSCHHHHH
T ss_pred cCCCHHHHHHHHHHHhhccc------CccchhhcCCCC----hhhhcc-ccCCCcccHHHHHHHHhcCCCcccCCHHHHH
Confidence 47899999999999999975 458999999876 899999 98 899999999999999 999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 000101 2007 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFRE 2052 (2239)
Q Consensus 2007 ~D~qLM~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df~~ 2052 (2239)
+||+|||+||+.|| +++.+|.+|..|+++|..+|+..||+..|..
T Consensus 140 ~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~~~~ 184 (189)
T 2ro1_A 140 QDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTKFSA 184 (189)
T ss_dssp HHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 99999999999999 5899999999999999999999999988754
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=172.72 Aligned_cols=109 Identities=16% Similarity=0.269 Sum_probs=96.2
Q ss_pred CCccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHH
Q 000101 1926 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 2005 (2239)
Q Consensus 1926 gs~~~~~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef 2005 (2239)
||+..-.++...+...|..|+++|... ..+..|+. | +||||+| |++||||.+|..||+.++|.++.+|
T Consensus 1 ~~~~~e~~~~~~L~~~~~~il~~l~~~------~~~~~F~~-P----~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~~f 68 (131)
T 2dkw_A 1 GSSGSSGNTLRELRLFLRDVTKRLATD------KRFNIFSK-P----VSDYLEV-IKEPMDLSTVITKIDKHNYLTAKDF 68 (131)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHHHHS------GGGCTTSS-C----CSSCTTS-CSSCCCHHHHHHHHHTTCCCSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhC------ccchhhcC-c----CccHHhH-cCCCcCHHHHHHHHcCCCCCCHHHH
Confidence 344444566788889999999999765 34678988 4 9999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCcH----HHHHHHHHHHHHHHHHHHhCC
Q 000101 2006 VSDVQFMLKGAMQFYGFSHE----VRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2006 ~~D~qLM~~Na~~yn~~~se----v~~dA~~L~~~f~~~~k~~fP 2046 (2239)
..||.|||.||+.||+++|+ +|.+|+.|++.|..+|+..+.
T Consensus 69 ~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 69 LKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 589999999999999977665
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=203.36 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=94.4
Q ss_pred eEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCC-
Q 000101 1345 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 1423 (2239)
Q Consensus 1345 KVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDp- 1423 (2239)
..||||.....++.+...|...++.+..+||+++.++|..+++.|+.+++.+. ||++|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 44888998999999999999999999999999999999999999997444443 69999999999999 9999999999
Q ss_pred -------------CCCcchHHHhhhhhcccCCc-ceEEEEEEeh
Q 000101 1424 -------------DPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1453 (2239)
Q Consensus 1424 -------------pWNP~~dlQAiGRAhRIGQk-KeV~VyrLva 1453 (2239)
|++...+.|+.|||+|.|.. ....|+.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999977 3456666644
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-17 Score=210.33 Aligned_cols=250 Identities=18% Similarity=0.170 Sum_probs=165.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHh
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVA 1096 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~ 1096 (2239)
.+.+.|+..+||+|||.++...+.. ....+||++|+. +..|+...+.+.+. ..+....|... .
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------~ 294 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------I 294 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE---------E
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe---------c
Confidence 4566789999999999877655432 234799999987 66778887776653 33444555432 2
Q ss_pred hcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh--HHHHHhhcccc---ceEEEecCCCCCCCHHHHHHHH
Q 000101 1097 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYRC---QRRLLLTGTPLQNDLKELWSLL 1171 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S--KlskaLk~Lka---~rRLLLTGTPIQNnL~ELwsLL 1171 (2239)
....+|+|+|++.|..+ ..+...++++|||||||.+- ... .+...+..+.. ...+++||||-..
T Consensus 295 ~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~-~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~--------- 363 (666)
T 3o8b_A 295 TTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTD-STTILGIGTVLDQAETAGARLVVLATATPPGS--------- 363 (666)
T ss_dssp CCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCS-HHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC---------
T ss_pred cCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcC-ccHHHHHHHHHHhhhhcCCceEEEECCCCCcc---------
Confidence 35789999999999654 34555679999999998763 222 23333444432 2367789997330
Q ss_pred hhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEecc
Q 000101 1172 NLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1251 (2239)
Q Consensus 1172 nFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~M 1251 (2239)
+. .+ .|.. ..+.+..
T Consensus 364 -------i~----------~~----------------------------------------------~p~i--~~v~~~~ 378 (666)
T 3o8b_A 364 -------VT----------VP----------------------------------------------HPNI--EEVALSN 378 (666)
T ss_dssp -------CC----------CC----------------------------------------------CTTE--EEEECBS
T ss_pred -------cc----------cC----------------------------------------------Ccce--EEEeecc
Confidence 00 00 0000 0000000
Q ss_pred CHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHH
Q 000101 1252 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWI 1331 (2239)
Q Consensus 1252 S~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLel 1331 (2239)
... +.. ... .+ .
T Consensus 379 ~~~-------------i~~-------------------------------------------~~~----~~-----~--- 390 (666)
T 3o8b_A 379 TGE-------------IPF-------------------------------------------YGK----AI-----P--- 390 (666)
T ss_dssp CSS-------------EEE-------------------------------------------TTE----EE-----C---
T ss_pred cch-------------hHH-------------------------------------------HHh----hh-----h---
Confidence 000 000 000 00 0
Q ss_pred HHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccC
Q 000101 1332 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLN 1411 (2239)
Q Consensus 1332 LdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLN 1411 (2239)
+. ...+.++||||+....++.+.+.|...|+.+..+||+++.++ |..... -+|++|+++++|||
T Consensus 391 l~------~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGID 454 (666)
T 3o8b_A 391 IE------AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYT 454 (666)
T ss_dssp GG------GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCC
T ss_pred hh------hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCC
Confidence 00 014779999999999999999999999999999999998764 333222 58999999999999
Q ss_pred CCcCceEE----------EcC-----------CCCCcchHHHhhhhhcccCCcce
Q 000101 1412 LQSADTVI----------IYD-----------PDPNPKNEEQAVARAHRIGQKRE 1445 (2239)
Q Consensus 1412 LqaADtVI----------ifD-----------ppWNP~~dlQAiGRAhRIGQkKe 1445 (2239)
+. +++|| +|| .|.++..|+||+||++| |....
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 96 99998 577 78888999999999999 75543
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=178.79 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=96.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
..+.|+..|.++|.... .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 35679999999888642 578999999999999999999999999999999999999999999999975444 78999
Q ss_pred cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1404 rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+++++|||++.+++||+||+|||+..|.||+||++|.|++..+.++
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999999987665444
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=182.45 Aligned_cols=141 Identities=28% Similarity=0.310 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPsl 1076 (2239)
..+|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||+ .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 45899999999998664 4468999999999999998887643 4689999998 5889999999994 45
Q ss_pred c-eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEe
Q 000101 1077 S-CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1155 (2239)
Q Consensus 1077 k-vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLL 1155 (2239)
. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+... ...+..+...++|+|
T Consensus 159 ~~v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l~L 224 (237)
T 2fz4_A 159 EYVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRLGL 224 (237)
T ss_dssp GGEEEESSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEEEE
T ss_pred CeEEEEeCCCC-----------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChHH--HHHHHhccCCEEEEE
Confidence 6 777777643 256899999999987765543 4699999999999976543 344556678899999
Q ss_pred cCCCCCCCH
Q 000101 1156 TGTPLQNDL 1164 (2239)
Q Consensus 1156 TGTPIQNnL 1164 (2239)
||||.+++-
T Consensus 225 SATp~r~D~ 233 (237)
T 2fz4_A 225 TATFEREDG 233 (237)
T ss_dssp EESCC----
T ss_pred ecCCCCCCC
Confidence 999988764
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=171.01 Aligned_cols=118 Identities=21% Similarity=0.311 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG 1407 (2239)
|+..|..++... .+.++||||+....++.+..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 999999988864 578999999999999999999999999999999999999999999999975444 689999999
Q ss_pred cccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1408 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1408 eGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+|||++.+++||+||+|||+..|.|++||++|.|+...|.++.
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 134 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 134 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999887765554
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=177.06 Aligned_cols=119 Identities=26% Similarity=0.335 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|.++|.. .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 35688877776653 467999999999999999999999999999999999999999999999975444 789999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++++|||++.+++||+||+|||+..|.||+||++|.|++..+.++
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 999999999999999999999999999999999999998766554
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-15 Score=189.51 Aligned_cols=111 Identities=22% Similarity=0.228 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
+++..|...|..+...+.+|||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+... +|++|+++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecchh
Confidence 455555555666666789999999999999999999999999999999999999999999999975444 79999999
Q ss_pred ccccCCCcCceEEEcCC-----CCCcchHHHhhhhhccc
Q 000101 1407 GRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1440 (2239)
Q Consensus 1407 GeGLNLqaADtVIifDp-----pWNP~~dlQAiGRAhRI 1440 (2239)
++|||++.+++||++|. ++++..|+|++||++|.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 99999999999999998 89999999999999997
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=210.52 Aligned_cols=149 Identities=19% Similarity=0.131 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--------CCCCeEEEechH-HHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--------NYGPHLIIVPNA-VLVNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~--------~~GP~LIVVP~S-LLsQW~~Ef~ 1070 (2239)
+|.+.|.+++..++ +.+.|.+++..||+|||+.+...|+..+.... ..+.+|+|+|.. |+.+-..+|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999987654 46788999999999999998777665543221 234689999966 7777778887
Q ss_pred HHCC--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh------hhcccCCceEEEecccccccChh-hH--
Q 000101 1071 KWLP--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SV-- 1139 (2239)
Q Consensus 1071 KwaP--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrIKN~~-SK-- 1139 (2239)
+.+. ++.+..+.|......+ .....+|+|||+|.+.... ..+ ....+|||||+|.+.+.- ..
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~-----~~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~lE 228 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE-----EISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVLE 228 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT-----TGGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc-----ccCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHHH
Confidence 7664 4567777776432111 1246899999999874321 112 257899999999886522 11
Q ss_pred --HHHHhh---ccc-cceEEEecCC
Q 000101 1140 --LARDLD---RYR-CQRRLLLTGT 1158 (2239)
Q Consensus 1140 --lskaLk---~Lk-a~rRLLLTGT 1158 (2239)
+.+.+. ... .-++++||||
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecc
Confidence 222221 122 3368999999
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=183.28 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=102.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
....|+..|...+..+...+.+|||||......+.|...|...|+++..|||.....+|..+...|.. +. ++|+|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEc
Confidence 34468888888888887789999999999999999999999999999999998554444444445543 33 89999
Q ss_pred cccccccCCC--------cCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1404 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1404 rAGGeGLNLq--------aADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+.+|+|+|+. ...+||+||.|-++..|.|++||++|.|.......|
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 9999999998 567999999999999999999999999988765443
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=190.62 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCC-CHHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2014 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~D~qLM~~ 2014 (2239)
+.++..|..+|..+. ++||.+|..|+.+|+++.+||||++ |++||||.+|++|| .+|. ++.+|+.||.|||+
T Consensus 27 p~~~~~~~~~L~~~~----~~~r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~ 99 (311)
T 2r0y_A 27 PKFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 99 (311)
T ss_dssp TTHHHHHHHHHHHHH----HHSHHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HcCCchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHH
Confidence 456667888887763 4799999999999999999999999 99999999999999 6676 89999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+.||+++|.||++|+.|+++|...|.++
T Consensus 100 Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 100 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998765
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-16 Score=167.65 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1407 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGG 1407 (2239)
|+..|..++..+ .+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|++++
T Consensus 21 K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~ 95 (175)
T 2rb4_A 21 KYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSCC
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecchh
Confidence 888888877654 467999999999999999999999999999999999999999999999975444 789999999
Q ss_pred cccCCCcCceEEEcCCC------CCcchHHHhhhhhcccCCcceEE
Q 000101 1408 RGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVK 1447 (2239)
Q Consensus 1408 eGLNLqaADtVIifDpp------WNP~~dlQAiGRAhRIGQkKeV~ 1447 (2239)
+|||++.+++||+||+| |++..|.||+||++|.|+...+.
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~ 141 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 141 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEE
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEE
Confidence 99999999999999999 67789999999999999765443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=165.28 Aligned_cols=154 Identities=20% Similarity=0.156 Sum_probs=115.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~---k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPs 1075 (2239)
+|+|||.+++.+++. +.++|++.+||+|||++++..+...+.. ......+|||||+ .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 799999999998876 6789999999999999877766554321 1234579999998 5889999999999998
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|......... .....++|+|+|++.+..... .+...++++|||||||++.+ ....+...+..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~ 176 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKE--ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176 (207)
T ss_dssp SCEEEECSSSCSHHHHH--HHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred ceEEEEECCCChHHHHH--HhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccC
Confidence 88888887654433221 122478999999999876532 33445789999999999854 3344555555554 34
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
..++||||+
T Consensus 177 ~~i~~SAT~ 185 (207)
T 2gxq_A 177 QTLLFSATL 185 (207)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEEec
Confidence 578999997
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=171.18 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=108.0
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..++.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|+
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 45799999999874 3478999999999999999999999999999999999999999999999975444 699999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++++|||++.+++||+||+||++..|.||+||++|.|+...+.+++
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 9999999999999999999999999999999999999876655443
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=190.54 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCC-CHHHHHHHHHHHHH
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2014 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~D~qLM~~ 2014 (2239)
+.+...|..+|..| ++.|+.++..|+.+|++.++||||+| |++||||.+|++|| .+|. ++.+|+.||.|||+
T Consensus 77 ~~~~~~~~~~l~~l----~~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~ 149 (361)
T 2r10_A 77 PKFNRFISFTLDVL----IDKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 149 (361)
T ss_dssp TTHHHHHHHHHHHH----HHHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHH
Confidence 45666788888766 55789999999999999999999999 99999999999999 5666 79999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2015 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2015 Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||+.||+++|.||.+|..|+++|...|.+.
T Consensus 150 Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 150 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988764
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-14 Score=183.05 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||+++..+|.++++.|..+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566667666777777899999999999999999999999999999999999999999999999864433 7999999
Q ss_pred cccccCCCcCceEEEcCC-----CCCcchHHHhhhhhcccCC
Q 000101 1406 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIGQ 1442 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDp-----pWNP~~dlQAiGRAhRIGQ 1442 (2239)
+++|||++.+++||++|. ++++..++|++||++|.|.
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~ 540 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 540 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC
Confidence 999999999999999998 8999999999999999863
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=167.71 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHH-HHHHHHHHC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVN-WKSELHKWL 1073 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k---~~~GP~LIVVP~S-LLsQ-W~~Ef~Kwa 1073 (2239)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... ...+++|||||.. ++.| |..++.+|.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4899999999998875 67899999999999999998887766432 2356899999985 7788 999999997
Q ss_pred C-CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--------cccCCceEEEecccccccC
Q 000101 1074 P-SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1074 P-slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrIKN 1135 (2239)
. .+.+..+.|........... ....+|+|+||+.+...... +....|++|||||||++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEV--VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHH--HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhHHhh--ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 6 46777777764432221111 12579999999999765433 3345789999999999954
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=166.89 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
+++|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||+. |+.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998886 677999999999999998887776553222334899999975 8899999999987 46
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh---hhHHHHHhhccc-c
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR-C 1149 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~Lk-a 1149 (2239)
+.+.++.|........ ..+.....+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+. .
T Consensus 112 ~~v~~~~g~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 190 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 190 (220)
T ss_dssp CCEEEESCCSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS
T ss_pred ceEEEEeCCCChHHHH-HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCc
Confidence 7888888875543322 22344567999999999976532 233457899999999999542 223333444443 4
Q ss_pred ceEEEecCCCCC
Q 000101 1150 QRRLLLTGTPLQ 1161 (2239)
Q Consensus 1150 ~rRLLLTGTPIQ 1161 (2239)
.++++|||||-.
T Consensus 191 ~~~i~~SAT~~~ 202 (220)
T 1t6n_A 191 KQVMMFSATLSK 202 (220)
T ss_dssp SEEEEEESCCCT
T ss_pred CeEEEEEeecCH
Confidence 568899999843
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-16 Score=179.22 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..+...|..||++|... ..+..|+.++++..+||||.+ |++||||.+|..||+.+.|.++.+|+.||.|||.|
T Consensus 13 ~~l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 13 VTLSSILESIINDMRDL------PNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHTS------TTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC------CCchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 37788999999999664 358999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2046 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~fP 2046 (2239)
|+.||+++|.||.+|..|+++|...++..-+
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987644
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-17 Score=175.75 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=108.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+.+|..++.. ..+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888875 3467999999999999999999999999999999999999999999999975443 7999999
Q ss_pred cccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1406 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++|||++.+++||+||+|||+..+.|++||++|.|++..|.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999987765543
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=164.66 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k----~~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
.++|||.+++.+++. +.++|++.+||+|||++++..+...+... .....+|||||+. |+.||..++.++..
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999999875 67899999999999999887776554321 2345789999975 88999999999986
Q ss_pred C--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1075 S--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1075 s--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
. +.+.++.|......... .....+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~---~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAE---RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp TSSCCEEEECCC--CHHHHH---HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCHHHHHH---hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhC
Confidence 4 67777777655433221 12478999999999976533 234457899999999998653 34555566666
Q ss_pred c-cceEEEecCCC
Q 000101 1148 R-CQRRLLLTGTP 1159 (2239)
Q Consensus 1148 k-a~rRLLLTGTP 1159 (2239)
+ ...+++||||+
T Consensus 200 ~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 200 PKKRQTLLFSATQ 212 (236)
T ss_dssp CTTSEEEEEESSC
T ss_pred CCCCeEEEEEeeC
Confidence 5 34579999997
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-15 Score=165.35 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=113.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---s 1075 (2239)
.++|||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||+. |+.||.+++.+|.. +
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998775 678999999999999997666655443234456899999975 88999999999963 6
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccCh---hhHHHHHhhccc-c
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR-C 1149 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~Lk-a 1149 (2239)
+.+.++.|+....... ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..++ .
T Consensus 122 ~~~~~~~g~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 198 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDK---TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPAS 198 (230)
T ss_dssp CCEEEECTTSCHHHHH---HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSS
T ss_pred ceEEEEeCCCCHHHHH---HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCC
Confidence 7788888875543322 12247899999999997653 2333457889999999999543 344445555565 4
Q ss_pred ceEEEecCCC
Q 000101 1150 QRRLLLTGTP 1159 (2239)
Q Consensus 1150 ~rRLLLTGTP 1159 (2239)
.++++||||+
T Consensus 199 ~~~l~lSAT~ 208 (230)
T 2oxc_A 199 KQMLAVSATY 208 (230)
T ss_dssp CEEEEEESCC
T ss_pred CeEEEEEecc
Confidence 4678999995
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=160.94 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=113.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---s 1075 (2239)
+|+|||.+++..++. +.++|+..+||+|||++++..+...+.......++|||||+. |+.||..++.+++. .
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 678999999999999988776665543333445799999975 78999999998874 5
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccc-cc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk-a~ 1150 (2239)
+.+..+.|......... ......+|+|+|++.+..... .+...++++|||||||++... ...+...+..++ ..
T Consensus 101 ~~~~~~~g~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 178 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIM--RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 178 (206)
T ss_dssp CCEEEECSSSCHHHHHH--HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTC
T ss_pred ceEEEEeCCccHHHHHH--hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccc
Confidence 67777777765443322 223578999999999876532 233447899999999998653 333444444554 45
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
.+++||||+
T Consensus 179 ~~l~~SAT~ 187 (206)
T 1vec_A 179 QILLYSATF 187 (206)
T ss_dssp EEEEEESCC
T ss_pred eEEEEEeeC
Confidence 689999997
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-15 Score=164.63 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC----
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---- 1074 (2239)
+++|||.+++.+++. +.++|++.+||+|||++++..+...+........+|||||+. |+.||.+++.+++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 699999999999886 678999999999999998777665543333456799999975 88999999999875
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk 1148 (2239)
.+.+..+.|+....... ......++|+|+|++.+..... .+....+++|||||||++.+ ....+...+..++
T Consensus 102 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 179 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL--EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 179 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT--CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccceEEEEEeCCCCHHHHH--HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC
Confidence 45666677765432211 0112367899999999876432 23345789999999999864 3344555556664
Q ss_pred -cceEEEecCCCCCCCHHHH
Q 000101 1149 -CQRRLLLTGTPLQNDLKEL 1167 (2239)
Q Consensus 1149 -a~rRLLLTGTPIQNnL~EL 1167 (2239)
...+++||||+ .+.+.++
T Consensus 180 ~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 180 KDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TTCEEEEEESCC-CGGGHHH
T ss_pred cccEEEEEecCC-CHHHHHH
Confidence 34588999997 4444443
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=164.99 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
++++||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||+. |+.||.++|.+++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999998875 678899999999999998887776665455556799999986 78999999999975 56
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccC--hhhHHHHHhhccc-cc
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1150 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~ 1150 (2239)
.+.++.|+........ .....++|+|+|++.+..... .+....+++|||||||++.+ ....+...+..++ ..
T Consensus 141 ~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~ 218 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSL--ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR 218 (249)
T ss_dssp CEEEECTTSCHHHHHH--HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSS
T ss_pred eEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCC
Confidence 7777777655433322 223578999999999976543 23344689999999999865 3334555555564 45
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
.+++||||+
T Consensus 219 ~~l~~SAT~ 227 (249)
T 3ber_A 219 KTFLFSATM 227 (249)
T ss_dssp EEEEEESSC
T ss_pred eEEEEeccC
Confidence 688999997
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=160.98 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
+|+|||.+++..++. +.++|++.+||+|||++++..+...+........+|||||+. |+.||..++.+++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 799999999998875 678999999999999987665554443334456899999975 78999999999976 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccc-cce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lk-a~r 1151 (2239)
.+..+.|........ ......+|+|+|++.+..... .+...++++|||||||++.+ ....+...+..+. ..+
T Consensus 112 ~~~~~~g~~~~~~~~---~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~ 188 (224)
T 1qde_A 112 KVHACIGGTSFVEDA---EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 188 (224)
T ss_dssp CEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred eEEEEeCCcchHHHH---hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCe
Confidence 667777765432221 112248999999999876532 23345789999999999854 3334445555554 345
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
+++||||+
T Consensus 189 ~i~lSAT~ 196 (224)
T 1qde_A 189 VVLLSATM 196 (224)
T ss_dssp EEEEESSC
T ss_pred EEEEEeec
Confidence 78999997
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-15 Score=178.62 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
..++..|..||++|.. +..+..|+.++++..+||||++ |++||||.+|..||+.+.|.++.+|..||.|||+|
T Consensus 46 ~~l~~~~~~il~~l~~------~~~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~N 118 (292)
T 3aad_A 46 VTLSSILESIINDMRD------LPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 118 (292)
T ss_dssp HHHHHHHHHHHHHHSS------STTCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------CCcchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHH
Confidence 3457789999999954 4678999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|+.||+++|.+|.+|..|+++|..+++..
T Consensus 119 a~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 119 SATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999888764
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=171.13 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+.+|.+++.... +.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 3569999999987654 88999999999999999999999999999999999999999999999975544 799999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++++|||++.+++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 9999999999999999999999999999999999999886655443
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=160.96 Aligned_cols=154 Identities=22% Similarity=0.260 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH-HHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA-VLVNWKSEL 1069 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~---------~~GP~LIVVP~S-LLsQW~~Ef 1069 (2239)
+|+|||.+++..++. +.++|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 799999999998876 678899999999999998887766553221 235799999975 889999999
Q ss_pred HHHCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHH
Q 000101 1070 HKWLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARD 1143 (2239)
Q Consensus 1070 ~KwaPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlska 1143 (2239)
.+|... +.+..+.|+........ ......+|+|+|++.+..... .+....+++|||||||++.+. ...+...
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 198 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIR--EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKI 198 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHH--HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHH--HhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHH
Confidence 999754 56666666654433321 223478999999999976532 233446789999999998543 3445555
Q ss_pred hhcc--c---cceEEEecCCC
Q 000101 1144 LDRY--R---CQRRLLLTGTP 1159 (2239)
Q Consensus 1144 Lk~L--k---a~rRLLLTGTP 1159 (2239)
+..+ . ...+++|||||
T Consensus 199 ~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 199 IEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHSSCCCCGGGCEEEEEESSC
T ss_pred HhhccCCCCCCcEEEEEEEeC
Confidence 5533 2 34589999997
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=162.01 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.|++||.+++..++. +.++|++.+||+|||++++..+...+........+|||||+. |+.||..++.+++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 678999999999999987777665543233456899999975 88999999999986 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhcccc-ce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-QR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka-~r 1151 (2239)
.+..+.|....... ...+....++|+|+|++.+..... .+....+++|||||||++.+ ....+...+..+.. ..
T Consensus 128 ~~~~~~g~~~~~~~-~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 206 (237)
T 3bor_A 128 TCHACIGGTNVRNE-MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206 (237)
T ss_dssp CEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred eEEEEECCCchHHH-HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCe
Confidence 56666665443322 222334458999999999876532 23445689999999999843 34455666666643 45
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
.++||||+
T Consensus 207 ~i~~SAT~ 214 (237)
T 3bor_A 207 VVLLSATM 214 (237)
T ss_dssp EEEECSSC
T ss_pred EEEEEEec
Confidence 78899997
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=153.08 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~------k~~~GP~LIVVP~S-LLsQW~~Ef~Kw 1072 (2239)
+++|||.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||||+. |+.||..++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 799999999988875 6788999999999999987766554421 12445789999977 889999999998
Q ss_pred C-CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhcc
Q 000101 1073 L-PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1147 (2239)
Q Consensus 1073 a-Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~L 1147 (2239)
. .++.+..+.|......... .....++|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 195 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIE--DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 195 (228)
T ss_dssp CCTTCCEEEECC------CHH--HHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCceEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhC
Confidence 6 4667777776644332221 123468999999999976432 233446899999999998643 33455555555
Q ss_pred c-cceEEEecCCC
Q 000101 1148 R-CQRRLLLTGTP 1159 (2239)
Q Consensus 1148 k-a~rRLLLTGTP 1159 (2239)
. ....++||||.
T Consensus 196 ~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 196 RPDRQTVMTSATW 208 (228)
T ss_dssp CSSCEEEEEESCC
T ss_pred CcCCeEEEEEeeC
Confidence 4 34578899995
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-13 Score=149.85 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=112.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-----~~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
+++|||.+++..++. +.+.|+...||+|||+.++..+...+... .....+|||||+. |+.||..++.+++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 699999999988876 67899999999999999887776655422 2345689999976 7889999998886
Q ss_pred C--CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhcc
Q 000101 1074 P--SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRY 1147 (2239)
Q Consensus 1074 P--slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L 1147 (2239)
. ++.+..+.|......... .....++|+|+|++.+..... .+...++++|||||||++.+ ....+...+..+
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~ 204 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIR--DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 204 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHH--HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS
T ss_pred hhcCceEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC
Confidence 3 567777777654433322 122368999999999976532 23344789999999999854 334455555566
Q ss_pred cc-ceEEEecCCC
Q 000101 1148 RC-QRRLLLTGTP 1159 (2239)
Q Consensus 1148 ka-~rRLLLTGTP 1159 (2239)
+. ...+++|||.
T Consensus 205 ~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 205 RPDRQTLMWSATW 217 (242)
T ss_dssp CSSCEEEEEESCC
T ss_pred CccceEEEEEeec
Confidence 43 4578899995
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=153.87 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~----~~GP~LIVVP~S-LLsQW~~Ef~KwaP 1074 (2239)
+|+|+|.+++..++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 699999999988876 567899999999999998887776654321 345689999976 88999999999986
Q ss_pred C--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh---cccCCceEEEecccccccC--hhhHHHHHhhcc
Q 000101 1075 S--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY 1147 (2239)
Q Consensus 1075 s--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrIKN--~~SKlskaLk~L 1147 (2239)
. +.+..+.|......... .+ ..+++|+|+|++.+...... +...++.+|||||||++.+ ....+...+..+
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~-~~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~ 229 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQ-KL-GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 229 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHH-HH-HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCceEEEEECCCCHHHHHH-Hh-cCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC
Confidence 4 45556666544332221 12 23589999999999765322 3334689999999999854 334445555555
Q ss_pred cc-ceEEEecCCC
Q 000101 1148 RC-QRRLLLTGTP 1159 (2239)
Q Consensus 1148 ka-~rRLLLTGTP 1159 (2239)
.. ...++||||+
T Consensus 230 ~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 230 PTRRQTMLFSATQ 242 (262)
T ss_dssp CSSSEEEEECSSC
T ss_pred CCCCeEEEEEecC
Confidence 43 4578899997
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=150.66 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs-- 1075 (2239)
.++|||.+++..++. +.+.|+..+||+|||++++..+...+... .....+|||||+. |+.||..++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 699999999988775 67789999999999999877766554322 2334699999976 889999999999864
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh----hcccCCceEEEecccccccC-----hhhHHHHHhhc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKD-----RESVLARDLDR 1146 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrIKN-----~~SKlskaLk~ 1146 (2239)
+.+..+.|....... ........++|+|+|++.+..... .+...++.+|||||||++.. ....+...+..
T Consensus 127 ~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~ 205 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKK-FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA 205 (245)
T ss_dssp CCEECCCHHHHHHTT-TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHH
T ss_pred ceEEEEecCccHHHH-hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHh
Confidence 444444443322111 111224567999999999976532 23344789999999999954 22333444443
Q ss_pred c--ccceEEEecCCC
Q 000101 1147 Y--RCQRRLLLTGTP 1159 (2239)
Q Consensus 1147 L--ka~rRLLLTGTP 1159 (2239)
+ ...++++||||+
T Consensus 206 ~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 206 CTSHKVRRAMFSATF 220 (245)
T ss_dssp CCCTTCEEEEEESSC
T ss_pred cCCCCcEEEEEeccC
Confidence 3 234679999997
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-12 Score=148.78 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=108.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P 1074 (2239)
..++++|..++..++. ..+.+.|++..||+|||++++..+...+........+|||||+. |+.|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3799999999987764 12367899999999999998766655543333444699999987 7888888888775 4
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh---hcccCCceEEEecccccccC---hhhHHHHHhhccc
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD---RESVLARDLDRYR 1148 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~Lk 1148 (2239)
.+.+.++.|...... ......+|+|+|++.+..... .+...++.+|||||||++.+ ....+...+..++
T Consensus 191 ~~~~~~~~~~~~~~~-----~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (300)
T ss_dssp TCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC
T ss_pred CcEEEEEeCCccHhh-----hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC
Confidence 677777776544221 113467899999999976642 33344789999999999864 2233334444444
Q ss_pred c-ceEEEecCCC
Q 000101 1149 C-QRRLLLTGTP 1159 (2239)
Q Consensus 1149 a-~rRLLLTGTP 1159 (2239)
. ...+++|||+
T Consensus 266 ~~~q~i~~SAT~ 277 (300)
T 3fmo_B 266 RNCQMLLFSATF 277 (300)
T ss_dssp TTCEEEEEESCC
T ss_pred CCCEEEEEeccC
Confidence 3 4578889997
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-11 Score=151.01 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccc
Q 000101 1331 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1409 (2239)
Q Consensus 1331 lLdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeG 1409 (2239)
.+...|..+ ...+.++|||+.....++.+.+.|.. +. +.+.|.. .+|.++++.|..+ .. ..|.+++....+|
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~EG 443 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceecc
Confidence 344444444 34567999999999999999888754 33 3445554 4688999999862 22 2233478999999
Q ss_pred cCCCc----CceEEEcCCCCCcc------------------------------hHHHhhhhhcccCCcceEEEE
Q 000101 1410 LNLQS----ADTVIIYDPDPNPK------------------------------NEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1410 LNLqa----ADtVIifDppWNP~------------------------------~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
||+++ +..||+++.|+-+. ...|++||+.|--...-|.++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99997 89999999996433 245999999997655555443
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-10 Score=149.62 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=94.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHH---HHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVN---WKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQ---W~~Ef~Kwa 1073 (2239)
+...+|-|+.|+--|+. +. |....||+|||++++..+.... . ....++||||+.. ..| |...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~a-L--~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNA-L--TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHH-T--TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHH-H--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999877664 33 8889999999998766553221 1 2246899999984 444 666666665
Q ss_pred CCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHH----Hhh-----hhcccC---CceEEEecccccccChhhHHH
Q 000101 1074 PSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM----YDR-----SKLSKV---DWKYIIIDEAQRMKDRESVLA 1141 (2239)
Q Consensus 1074 Pslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~----kD~-----s~L~ki---kWd~VIIDEAHrIKN~~SKls 1141 (2239)
++.+.+..|+.....+. .....+|++.|++.|. ++. ..+... ...++||||+|+|.-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~----~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe---- 218 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERR----KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE---- 218 (997)
T ss_dssp -TCCEEECCTTCCHHHHH----HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS----
T ss_pred -CCeEEEEeCCCCHHHHH----HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC----
Confidence 56676666654322111 1225799999999983 221 112333 67899999999874211
Q ss_pred HHhhccccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1142 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1142 kaLk~Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
+..-|++|| |+... ..+|..++
T Consensus 219 -------artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 219 -------ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp -------TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred -------CCCCeeeeC-CCccc-hHHHHHHH
Confidence 112388999 87766 45554443
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=135.12 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHH
Q 000101 1934 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2013 (2239)
Q Consensus 1934 l~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~ 2013 (2239)
|+..+++.++.||+.|... .....|+. | . ++.||||.+|++||+.++|.++.+|++||.|||
T Consensus 72 ~~~el~~~l~~vl~~L~~~------~~s~~~~~---------y-~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNS------RTTSHLLR---------Y-R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTC------HHHHHHHT---------C-C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc------cccHhhhh---------h-h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 5677888889999988644 33445544 3 3 489999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Q 000101 2014 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 2054 (2239)
Q Consensus 2014 ~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~fP~~df~~a~ 2054 (2239)
.||..||++.++|.+....|+.+|...|+.+||..++.+-|
T Consensus 134 ~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~~~ 174 (183)
T 3lqh_A 134 QAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174 (183)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGGCT
T ss_pred HHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999988877655
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-08 Score=127.50 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
++||+|.+.+.-+...+.++.++|+...||+|||+.++..+...+... ..++||++|+. +..|+.+++.++.. .+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999988877777788999999999999999988766655433 35789999976 78899999887642 45
Q ss_pred ceEEEec
Q 000101 1077 SCIYYVG 1083 (2239)
Q Consensus 1077 kvvvy~G 1083 (2239)
++++..|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5544433
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.3e-09 Score=116.71 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=93.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~--~GP~LIVVP~S-LLsQW~~Ef~KwaPs- 1075 (2239)
.+++||.+++..+.. +...++..++|+|||.++..++.......+. ...+|+++|.. +..+....+...+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 578999999998876 6778999999999998776665554433332 23678888987 455666677665532
Q ss_pred Cc-eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccc-cChhhH--HHHHh-hccccc
Q 000101 1076 VS-CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESV--LARDL-DRYRCQ 1150 (2239)
Q Consensus 1076 lk-vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrI-KN~~SK--lskaL-k~Lka~ 1150 (2239)
+. .+-|.-....+ ......+|+|+|++.+.+.... .-.++++|||||||++ .+.... ..+.+ ..+...
T Consensus 137 ~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 137 PGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV 209 (235)
T ss_dssp TTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS
T ss_pred cCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC
Confidence 11 11121111000 1124578999999998776432 2346899999999984 222221 22222 233445
Q ss_pred eEEEecCCC
Q 000101 1151 RRLLLTGTP 1159 (2239)
Q Consensus 1151 rRLLLTGTP 1159 (2239)
..+++|||+
T Consensus 210 ~~il~SAT~ 218 (235)
T 3llm_A 210 RIVLMSATI 218 (235)
T ss_dssp EEEEEECSS
T ss_pred eEEEEecCC
Confidence 678899996
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-08 Score=126.56 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--s 1075 (2239)
.++||||.+.+.-+...+.++.++|+...||+|||+.++..+.. ...++||++|+. +..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37899999999887777777888999999999999988776654 245899999977 78899999988743 4
Q ss_pred CceEEEecchhh--------------------------------HHHHHH-----------------HHhhcCccEEEEe
Q 000101 1076 VSCIYYVGAKDQ--------------------------------RSRLFS-----------------QVAALKFNVLVTT 1106 (2239)
Q Consensus 1076 lkvvvy~Gskd~--------------------------------Rk~l~~-----------------~i~~~kfdVVITT 1106 (2239)
+++++..|.... ...+.. .......+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 666666653221 011111 1123467999999
Q ss_pred hhHHHHhh--hhcc-cCCceEEEecccccccC
Q 000101 1107 YEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 1135 (2239)
Q Consensus 1107 YE~L~kD~--s~L~-kikWd~VIIDEAHrIKN 1135 (2239)
|.++..+. ..+. .....+|||||||+|-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998763 2221 13667899999999976
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.4e-10 Score=118.14 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=78.3
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
+.+.+ +++.|+.++ +.+||+++++| .|||++ |+||. ++||+|.. |..+|+.|.|.++.++..|+.+
T Consensus 10 ~~l~~-l~~~v~~~~-----De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 10 ELIHN-LFVSVMSHQ-----DDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp HHHHH-HHHHHHTCB-----CTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhc-----CCCCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 45566 888999999 78999999999 999998 89998 99999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQPKIKRKRS 1807 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~~~~~rkr~ 1807 (2239)
+||||| +|+.+||-.+.++|.
T Consensus 79 ~NAr~yN~e~S~Iy-----eDAv~Lq~~f~~~r~ 107 (147)
T 3iu6_A 79 ERARRMNRTDSEIY-----EDAVELQQFFIKIRD 107 (147)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHH-----HHHHHHHHHHHHHHH
Confidence 999999 999999955555543
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-10 Score=114.83 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=79.8
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..++. +.+.++... +.+||+++.+| .+|++..||+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~~-ll~~l~~~~-----d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 11 EILEQ-LLEAIVVAT-----NPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc-----CcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHH
Confidence 44555 677777777 66899999999 99999999999999999999999 9999999999999999999988
Q ss_pred --------CCCccccCCccccccccc-cccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIR 1809 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~ 1809 (2239)
+||+++ .++..|+ .+.++-.++.
T Consensus 84 ~Na~~yN~~~s~~~-----~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 84 KNAKTYNEPGSQVF-----KDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHhh
Confidence 999999 8888777 5555444443
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.4e-09 Score=109.62 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=71.5
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
+.+.+.... +++|+.++.+| .+|++..+||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 17 i~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 90 (126)
T 3mqm_A 17 ICDGIISYK-----DSSRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLKVFRNAEKY 90 (126)
T ss_dssp HHHHHHHCB-----CTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677766 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 91 N~~~s~~~-----~~A~~L~ 105 (126)
T 3mqm_A 91 YGRKSPVG-----RDVCRLR 105 (126)
T ss_dssp HCTTSHHH-----HHHHHHH
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 999999 8887776
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-09 Score=110.35 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=73.5
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..+.. +.+.+.... +.+|+.++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 18 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 18 QKLNE-VYEAVKNYT-----DKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhHh-----cccCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444 566677766 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 91 ~Na~~yN~~~s~i~-----~~A~~L~ 111 (124)
T 3mb4_A 91 NNACTYNEPESLIY-----KDALVLH 111 (124)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887776
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-09 Score=108.71 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=74.9
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..++. +.+.++... +.+||.++.+| .+|++..|||||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 16 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 16 KQMNA-IIDTVINYK-----DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp HHHHH-HHHHHHHCB-----CSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhh-----cccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 44555 667777776 56899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCcccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQP 1800 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~~ 1800 (2239)
++|+++ .++..|+-
T Consensus 89 ~Na~~yN~~~s~i~-----~~A~~L~~ 110 (123)
T 2dat_A 89 HNAQTFNLEGSQIY-----EDSIVLQS 110 (123)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHH
Confidence 999999 88877773
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.1e-09 Score=109.51 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=73.6
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.+.. +.+.+.+.. +..|+.++.+| .+|++..||+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 21 ~~~~-l~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 21 QSMQ-LYDTVRSCR-----NNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHH-HHHHHHTCB-----CSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-----cccCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3445 666777777 67899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ +++..|+
T Consensus 94 Na~~yN~~~s~i~-----~~A~~L~ 113 (130)
T 3k2j_A 94 NAKRYNVPNSAIY-----KRVLKLQ 113 (130)
T ss_dssp HHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8877776
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-09 Score=106.64 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=72.1
Q ss_pred cccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000101 1707 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1781 (2239)
Q Consensus 1707 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1781 (2239)
+.. +.+.+.... +.+||.++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 10 c~~-il~~l~~~~-----d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 10 CHE-LYNTIRDYK-----DEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp HHH-HHHHHHHCB-----CTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhh-----ccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 344 556677766 56899999999 99999999999999999999999 9999999999999999999988
Q ss_pred ------CCCccccCCccccccccc
Q 000101 1782 ------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 ------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ .++..|+
T Consensus 83 a~~yN~~~s~~~-----~~A~~L~ 101 (116)
T 3iu5_A 83 AKSYYKPDSPEY-----KAACKLW 101 (116)
T ss_dssp HHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7777666
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-09 Score=110.87 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=79.5
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.++. +++.+++.. ++.+||.++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 28 ~~k~-ll~~l~~~~----~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 28 RMKI-LFNVVLEAR----EPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH----hcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3444 667777766 245799999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc-cccccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVR 1811 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~~r 1811 (2239)
++|+++ .++..|+ -+.++-.++...
T Consensus 102 Na~~yN~~~s~i~-----~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 102 NARHYNEEGSQVY-----NDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHccCC
Confidence 999999 9998888 444444444444
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-08 Score=104.13 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=74.0
Q ss_pred cccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000101 1705 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1781 (2239)
Q Consensus 1705 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1781 (2239)
..+.. ++++++... ++.+||.++.+| .+|++..+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 14 ~~~~~-il~~l~~~~----d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 14 KKMKK-IVDAVIKYK----DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc----cccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33445 566677665 234899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCccccccccccc
Q 000101 1782 --------SGSWTHDRDEGEDEQVLQPK 1801 (2239)
Q Consensus 1782 --------~~Sw~~~~~~~~d~~~~~~~ 1801 (2239)
+||+++ .++..|+-.
T Consensus 88 ~Na~~yN~~~s~i~-----~~A~~L~~~ 110 (129)
T 2grc_A 88 QNAQTFNLEGSLIY-----EDSIVLQSV 110 (129)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888777733
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=98.03 E-value=3.7e-07 Score=93.91 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=59.5
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ +||+++ ..+..
T Consensus 22 ~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~A~~ 95 (112)
T 3d7c_A 22 HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-----RCASA 95 (112)
T ss_dssp SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhcCCCCcccccCHHHHccCCcCHHH-HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3468899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 96 L~ 97 (112)
T 3d7c_A 96 LE 97 (112)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-07 Score=93.03 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=57.9
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ +||+++ +.+..|
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~-----~~A~~L 97 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFST-MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYY-----KAAKKL 97 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHH-HHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHH-----HHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346788 77888899999999999999999 9999999999999999999999 999998 777666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 98 ~ 98 (117)
T 2i7k_A 98 L 98 (117)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.6e-07 Score=93.92 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 28 ~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~ 101 (121)
T 1e6i_A 28 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANR 101 (121)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhCCCCChhhCcCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 4578899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 102 L~ 103 (121)
T 1e6i_A 102 LE 103 (121)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.3e-07 Score=94.16 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=58.3
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ .++..|+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 97 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDHIKKPMDFFT-MKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY-----RAAVRLR 97 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHHcCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56889 99999999999999999999999 9999999999999999999999 899999 7776665
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-07 Score=92.56 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+..|
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L 102 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFST-IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG-----RAGHNM 102 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH-----HHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 467899 99999999999999999999999 9999999999999999999988 899988 776665
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 103 ~ 103 (117)
T 3g0l_A 103 R 103 (117)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=97.92 E-value=8.1e-07 Score=91.89 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=57.5
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +.+..|+
T Consensus 33 ~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 106 (116)
T 3nxb_A 33 DSWPFLEPVDESYAPNYYQIIKAPMDISS-MEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT-----KMSDNLE 106 (116)
T ss_dssp TCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHHH
T ss_pred CcHhhcCcCChhhccChHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 36789 99999999999999999999999 9999999999999999999998 899988 6666555
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9.9e-07 Score=96.13 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=67.3
Q ss_pred ccccccchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000101 1706 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1781 (2239)
Q Consensus 1706 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1781 (2239)
.+.. .+..++... -..+..+.+| .+|+...||+||.+|++||||+. |..+|+.|.|.++.++..|+.+
T Consensus 29 ~l~~-iL~~i~~~k------l~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 29 AFSF-ILDNIVTQK------MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp HHHH-HHHHHHHHT------TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH------HHcCCCchhhcCcCChhhcccHHHHcCCccCHHH-HHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3344 444466553 2456678899 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000101 1782 -------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 -------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+++ +++..|.
T Consensus 101 Na~~yN~~~s~i~-----~~A~~L~ 120 (158)
T 3uv4_A 101 NSVKYNGPESQYT-----KTAQEIV 120 (158)
T ss_dssp HHHHHHCTTCHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7776555
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=9.8e-07 Score=93.60 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=58.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+| .+|+...|||||.+|++||||+. |..+|+.|+|.++.++..|+.+ + ||+|+ +++..|
T Consensus 38 ~s~~F~~pv~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 111 (135)
T 3mb3_A 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFAT-VRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIY-----SMSLRL 111 (135)
T ss_dssp GGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHH-----HHHHHH
T ss_pred CChhhcCCCChhhCCCHHHHhCCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 37899 99999999999999999999999 9999999999999999999998 6 89999 777666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 112 ~ 112 (135)
T 3mb3_A 112 S 112 (135)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-06 Score=92.05 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1799 (2239)
.+.+| .+|+...+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +++..|.
T Consensus 30 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 103 (123)
T 3hme_A 30 PHGFFAFPVTDAIAPGYSMIIKHPMDFGT-MKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYY-----KLAKKIL 103 (123)
T ss_dssp TTCSSSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhcCCCChhhccCHHHHCCCCCCHHH-HHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45689 88899999999999999999999 9999999999999999999988 999998 7776555
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-06 Score=91.50 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000101 1731 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+| .+|+...|||||.+|++||||+. |..+|+.|.|.++.++..|+.+ + +|+++ .++..|
T Consensus 27 ~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 100 (123)
T 3q2e_A 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGT-VRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIY-----SMTLRL 100 (123)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHH-----HHHHHH
T ss_pred CcHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 47899 99999999999999999999999 9999999999999999999998 5 89998 777666
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 101 ~ 101 (123)
T 3q2e_A 101 S 101 (123)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-06 Score=91.84 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=58.1
Q ss_pred ccccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
+..+.+| ..++. ..+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ +||+++ ..+
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~A 109 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT-IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV-----LMA 109 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4578899 77774 589999999999999999 9999999999999999999999 899999 777
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 110 ~~L~ 113 (127)
T 2oss_A 110 EALE 113 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-06 Score=92.25 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...|||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +++..
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 101 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFAT-MRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFY-----RAAVR 101 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3457889 99999999999999999999999 9999999999999999999998 999999 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 102 L~ 103 (135)
T 3rcw_A 102 LR 103 (135)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.2e-06 Score=91.16 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCccccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000101 1727 NSRRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1793 (2239)
Q Consensus 1727 ~~r~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1793 (2239)
+.+.++.+| .+|+... |||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ .
T Consensus 25 ~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~ 98 (120)
T 3jvl_A 25 KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----A 98 (120)
T ss_dssp GGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----H
T ss_pred cCccccchhcCCCCchhcCCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 344567889 8889888 9999999999999999 9999999999999999999988 899999 7
Q ss_pred cccccc
Q 000101 1794 DEQVLQ 1799 (2239)
Q Consensus 1794 d~~~~~ 1799 (2239)
.+..|+
T Consensus 99 ~A~~L~ 104 (120)
T 3jvl_A 99 MARKLQ 104 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=97.77 E-value=2.9e-06 Score=89.58 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1781 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1781 (2239)
+..+.+| .+|+...|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 25 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 77 (130)
T 3dai_A 25 DKRFRVFTKPVDPDEVPDYVTVIKQPMDLSS-VISKIDLHKYLTVKDYLRDIDL 77 (130)
T ss_dssp SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 4457899 99999999999999999999999 9999999999999999999998
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.7e-06 Score=91.42 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=56.8
Q ss_pred cccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000101 1730 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
.++.+| .+|+... +||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+.
T Consensus 41 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~-----~~A~ 114 (130)
T 2ouo_A 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----AMAR 114 (130)
T ss_dssp HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred hhHHHhcCCCChhhccCCcHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHHH
Confidence 467889 7777654 9999999999999999 9999999999999999999999 899999 7776
Q ss_pred ccc
Q 000101 1797 VLQ 1799 (2239)
Q Consensus 1797 ~~~ 1799 (2239)
.|+
T Consensus 115 ~L~ 117 (130)
T 2ouo_A 115 KLQ 117 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-06 Score=95.19 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
+..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 87 ~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 160 (174)
T 2ri7_A 87 HKMAWPFLEPVDPNDAPDYYGVIKEPMDLAT-MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY-----QCAEV 160 (174)
T ss_dssp SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred hhhhhhhhcCCCcccCCchHHHhCCcCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 5578899 88999999999999999999999 9999999999999999999999 899998 77777
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 161 L~ 162 (174)
T 2ri7_A 161 LE 162 (174)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2e-06 Score=89.41 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.7
Q ss_pred ccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
+..+.+| .+++.. .+||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +.+
T Consensus 27 ~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 100 (119)
T 3p1f_A 27 DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY-----KFC 100 (119)
T ss_dssp TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCCchhcCCCCchhccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4567889 777877 69999999999999999 9999999999999999999998 999998 776
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 101 ~~L~ 104 (119)
T 3p1f_A 101 SKLA 104 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=97.73 E-value=2.6e-06 Score=92.49 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ------ 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~------ 1781 (2239)
+...+++.- .....+.+| .+|+.. .|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 36 ~~~~il~~l-------~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 36 LHKVVMKAL-------WKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGT-IKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp HHHTHHHHH-------HTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 444455554 234678899 888877 59999999999999999 9999999999999999999998
Q ss_pred ----CCCccccCCccccccccc
Q 000101 1782 ----SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 ----~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|+|+ .++..|+
T Consensus 108 ~YN~~~s~i~-----~~A~~L~ 124 (154)
T 4alg_A 108 IYNKPTDDIV-----LMAQTLE 124 (154)
T ss_dssp HHSCTTSHHH-----HHHHHHH
T ss_pred HHCCCCCHHH-----HHHHHHH
Confidence 999999 8887777
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.52 E-value=6.5e-06 Score=90.38 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=54.9
Q ss_pred ccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
...+.+| .+++ +..||+||.+|++||||+. |..+|+.|.|.++.++..|+.+ ++|+|+ ..+
T Consensus 36 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 109 (166)
T 3fkm_X 36 YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSC-IKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVA-----ITG 109 (166)
T ss_dssp STTGGGGSSCCC-----CCCGGGCCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHH-----HHH
T ss_pred CCCChhhcCCCChhhccCCCHHHhcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3456788 7755 4569999999999999999 9999999999999999999998 999999 777
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
..|+
T Consensus 110 ~~L~ 113 (166)
T 3fkm_X 110 KNIE 113 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=8.8e-06 Score=86.52 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=57.6
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccc
Q 000101 1729 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1796 (2239)
Q Consensus 1729 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1796 (2239)
+..+.+|.-|....+||||.+|++||||.. |..+|+. |+|.++.++..|+.+ ++|+++ .++.
T Consensus 35 ~~~s~~F~~Pv~~~~pdY~~iIk~PmDL~t-I~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A~ 108 (135)
T 2yyn_A 35 HEMSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGI 108 (135)
T ss_dssp SGGGGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred CccchhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 467889933545589999999999999999 9999998 699999999999999 999999 8887
Q ss_pred cccc
Q 000101 1797 VLQP 1800 (2239)
Q Consensus 1797 ~~~~ 1800 (2239)
.|+-
T Consensus 109 ~L~~ 112 (135)
T 2yyn_A 109 KLEN 112 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7773
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=2.2e-05 Score=83.26 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred ccccccCCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000101 1730 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1787 (2239)
Q Consensus 1730 ~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1787 (2239)
..+.+|.-| +||||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++
T Consensus 28 ~~~~~F~~P----~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 28 KRFNIFSKP----VSDYLEVIKEPMDLST-VITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp GGGCTTSSC----CSSCTTSCSSCCCHHH-HHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred ccchhhcCc----CccHHhHcCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 356788446 9999999999999999 9999999999999999999999 888763
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0018 Score=84.26 Aligned_cols=151 Identities=21% Similarity=0.159 Sum_probs=94.9
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
...|-+.|.++|..++. ...-.|+.-..|+|||.+.+.+|.+++.. ..++||++|+. .+.+....+......
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~~~- 259 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCKQR- 259 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTTCC-
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcCCc-
Confidence 34799999999998875 22235888899999999999999888752 35899999987 566666666554321
Q ss_pred ceEEEecchhh--------------------------------------------------------HHHHH------HH
Q 000101 1077 SCIYYVGAKDQ--------------------------------------------------------RSRLF------SQ 1094 (2239)
Q Consensus 1077 kvvvy~Gskd~--------------------------------------------------------Rk~l~------~~ 1094 (2239)
++-.|.... ++.+. ..
T Consensus 260 --ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 337 (646)
T 4b3f_X 260 --ILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAML 337 (646)
T ss_dssp --EEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --eEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111221100 00000 00
Q ss_pred HhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1095 VAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1095 i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
......+|+++|....... ...+....|++||||||-.+..+ ..+..+....+++|-|-|.|-
T Consensus 338 ~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~-----~~lipL~~~~~~ILVGD~~QL 402 (646)
T 4b3f_X 338 ESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEA-----SCWIPLLKARKCILAGDHKQL 402 (646)
T ss_dssp HHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHH-----HHTTTGGGSSEEEEEECTTSC
T ss_pred HHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchH-----HHHhhccccceEEEcCCcccc
Confidence 1123457888776554332 23456678999999998665332 233334445678889988663
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=2.9e-05 Score=87.83 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000101 1729 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1795 (2239)
Q Consensus 1729 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1795 (2239)
+..+.+|.-|....||+||.+|++||||++ |..+|+. |+|.++.++..|+.+ ++|+|+ .++
T Consensus 96 ~~~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~-----~~A 169 (207)
T 3u5n_A 96 HELSIEFQEPVPASIPNYYKIIKKPMDLST-VKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQ-----VYA 169 (207)
T ss_dssp STTCGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccchhhhhccCChhhccHhHHhCCccCHHH-HHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHH-----HHH
Confidence 346788833444589999999999999999 9999997 899999999999999 788888 666
Q ss_pred cccc
Q 000101 1796 QVLQ 1799 (2239)
Q Consensus 1796 ~~~~ 1799 (2239)
.++.
T Consensus 170 ~~l~ 173 (207)
T 3u5n_A 170 DTQE 173 (207)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=97.19 E-value=2.2e-05 Score=87.16 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.8
Q ss_pred cccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1731 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1731 l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
.+.+|.-|....+|+||.+|++||||+. |..+|+. |.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 98 ~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~-----~~a~~L 171 (184)
T 3o36_A 98 MSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGIKL 171 (184)
T ss_dssp TCHHHHSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHHHHH
T ss_pred hhhhhccccccCCCchhhhcCCCCCHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 4678833444679999999999999999 9999998 899999999999998 889888 766665
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 172 ~ 172 (184)
T 3o36_A 172 E 172 (184)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.005 Score=79.95 Aligned_cols=148 Identities=20% Similarity=0.308 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkv 1078 (2239)
.|-+.|.+++..++. +...++....|+|||.++..++..+.. ....++||++|+.. +.+....+.+.. +.+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~~--~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQTG--LKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTTT--CCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhcC--CeE
Confidence 689999999988764 344688889999999998888877763 24568999999874 455555555431 111
Q ss_pred EEEecchh------------------------------------------hHHHHH------HHHhhcCccEEEEehhHH
Q 000101 1079 IYYVGAKD------------------------------------------QRSRLF------SQVAALKFNVLVTTYEFI 1110 (2239)
Q Consensus 1079 vvy~Gskd------------------------------------------~Rk~l~------~~i~~~kfdVVITTYE~L 1110 (2239)
+ -.|... ..+.+. ........+||++|...+
T Consensus 252 ~-R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 252 V-RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp E-ECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred E-eeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 1 111100 000000 011134678999987665
Q ss_pred HHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1111 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1111 ~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
.. ..+....|++||||||..+..+.+ + +.-+....+++|-|-|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH-H---HHHHhcCCeEEEecChhcc
Confidence 32 345567899999999976654432 1 1112234588888988663
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0049 Score=76.98 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs 1063 (2239)
..|-+-|.+++..++.....+. ..+|....|+|||..+..++.++... + ...+++++|+....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~-~~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-G-ETGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-T-CCCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C-CceEEEecCcHHHH
Confidence 3699999999998876554444 66888999999999888888888753 2 24789999987654
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0078 Score=80.41 Aligned_cols=146 Identities=19% Similarity=0.270 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslkv 1078 (2239)
.|-+.|.+++..++. +...++....|+|||.++..++.++... ...++||++|+.. +.+....+.+.. +.+
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 689999999988764 3346888899999999998888887753 2358999999874 555656566542 121
Q ss_pred EEEecchh-----------------------------------------hHHHHH------HHHhhcCccEEEEehhHHH
Q 000101 1079 IYYVGAKD-----------------------------------------QRSRLF------SQVAALKFNVLVTTYEFIM 1111 (2239)
Q Consensus 1079 vvy~Gskd-----------------------------------------~Rk~l~------~~i~~~kfdVVITTYE~L~ 1111 (2239)
+ -.|... ..+.+. ........+||++|...+.
T Consensus 432 l-R~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 432 V-RLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp E-ECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred E-eecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 1 111100 000000 0111246689999987664
Q ss_pred HhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1112 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1112 kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
. ..+.. .|++||||||..+..... + +..+....+++|-|-|.|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~~-l---i~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPEC-L---IPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHHH-H---HHHHhCCCEEEEEeCccc
Confidence 2 23444 899999999988754321 2 222233468888898866
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0053 Score=79.12 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=82.6
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCc
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslk 1077 (2239)
+..|-+.|..++..++. +...+|.-..|+|||.++.+++..+.. ...++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45788999999998874 556788999999999888777766654 23588999998876655444211 00
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHH------hhhhcccCCceEEEecccccccChhhHHHHHhhccccce
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMY------DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~k------D~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r 1151 (2239)
..|...+.. ....-....+++|||||++.+-. ..+...+..+....
T Consensus 256 --------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 256 --------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGA 307 (574)
T ss_dssp --------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTC
T ss_pred --------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCC
Confidence 011111110 00111234789999999998842 23444455667778
Q ss_pred EEEecCCCCCC
Q 000101 1152 RLLLTGTPLQN 1162 (2239)
Q Consensus 1152 RLLLTGTPIQN 1162 (2239)
+++|.|-|-|.
T Consensus 308 ~lilvGD~~QL 318 (574)
T 3e1s_A 308 RVLLVGDTDQL 318 (574)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEeccccc
Confidence 99999999774
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0078 Score=80.38 Aligned_cols=149 Identities=20% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL-LsQW~~Ef~KwaPslk 1077 (2239)
..|-+.|.+++..++. +...++....|+|||.++..++..+... ...++||++|+.. +.+....+.+.. +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 3689999999988764 3346888999999999988888777632 3468999999874 444545454421 12
Q ss_pred eEEEecchhh------------------------HHHH-----------------H-------HHHhhcCccEEEEehhH
Q 000101 1078 CIYYVGAKDQ------------------------RSRL-----------------F-------SQVAALKFNVLVTTYEF 1109 (2239)
Q Consensus 1078 vvvy~Gskd~------------------------Rk~l-----------------~-------~~i~~~kfdVVITTYE~ 1109 (2239)
+ +-.|.... .+.+ + ........+||++|...
T Consensus 427 v-vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 V-VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp E-EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred e-EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 1 11111100 0000 0 00112356899998766
Q ss_pred HHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1110 IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1110 L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
+.. ..+....|++||||||..+..+.. + +..+....+++|-|-|.|-
T Consensus 506 ~~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 506 AGD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGC--TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred hCC--hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 542 235567899999999976644331 1 2222334688898988663
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0088 Score=77.52 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHH-HHHHHHHHHHCCCCce-
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC- 1078 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k-~~~GP~LIVVP~SLL-sQW~~Ef~KwaPslkv- 1078 (2239)
-+.|..++..++. +...++.-..|+|||.++..++..+.... ....+++|++|+... .+....+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 4789999987764 55678999999999987777776665421 233478999998754 4444444433211100
Q ss_pred -EEEecchhhHHHHHHHHhhcCcc-EEEEehhH--HHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEE
Q 000101 1079 -IYYVGAKDQRSRLFSQVAALKFN-VLVTTYEF--IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1154 (2239)
Q Consensus 1079 -vvy~Gskd~Rk~l~~~i~~~kfd-VVITTYE~--L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLL 1154 (2239)
....+... .....+ ++-++... +... ......+++||||||+.+- ...+...+..+....+++
T Consensus 227 ~~~~~~~~~---------~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQKKRIPE---------DASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCCCSCSC---------CCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEE
T ss_pred HHHHhccch---------hhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEE
Confidence 00000000 000011 11111111 1111 1122378999999999553 233455566777778999
Q ss_pred ecCCCCCCC
Q 000101 1155 LTGTPLQND 1163 (2239)
Q Consensus 1155 LTGTPIQNn 1163 (2239)
|.|-|-|-.
T Consensus 294 LvGD~~QL~ 302 (608)
T 1w36_D 294 FLGDRDQLA 302 (608)
T ss_dssp EEECTTSGG
T ss_pred EEcchhhcC
Confidence 999987654
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.22 Score=64.13 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~S-LLsQW~~Ef~Kwa 1073 (2239)
.|-+.|.++|.. . ....++-...|+|||.+.+.-+.+++...+ ....+|+|+++. ...+....+.+.+
T Consensus 9 ~Ln~~Q~~av~~-----~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA-----P-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC-----C-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC-----C-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 689999999961 1 334566677999999999999999986433 334689999866 4555666666654
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.08 Score=65.27 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---P 1074 (2239)
..|.|||...+..+.. ....++.-.-+.|||..+.+++++.... .....+++++|+. ....+...+..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4899999998876632 2336777789999999888877765532 2334688888876 3444446666553 4
Q ss_pred C-CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-ccc--cc
Q 000101 1075 S-VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR--CQ 1150 (2239)
Q Consensus 1075 s-lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lk--a~ 1150 (2239)
. +...+...+.. +.. +. .+..+.+.+- +...+.....+++||||+|.+.+. ..++.++. .+. ..
T Consensus 237 ~ll~~~~~~~~~~-~I~----f~-nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~ 304 (385)
T 2o0j_A 237 DFLQPGIVEWNKG-SIE----LD-NGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRR 304 (385)
T ss_dssp TTTSCCEEEECSS-EEE----ET-TSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTC
T ss_pred HhhhhhhccCCcc-EEE----eC-CCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCC
Confidence 3 21111111100 000 11 1122222221 223455667899999999999863 23344443 222 34
Q ss_pred eEEEecCCCCCCCHHHHHHHHhh
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNL 1173 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnF 1173 (2239)
.+++++.||-..+ .+|.+...
T Consensus 305 ~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 305 SKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CEEEEEECCCSSS--HHHHHHHH
T ss_pred CcEEEEeCCCCch--hHHHHHHH
Confidence 6788888886553 55555543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.034 Score=61.49 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.++.-.||+|||..++.++..+.. ...+++|+.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 467889999999888777765543 22467888776
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0021 Score=71.95 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=50.9
Q ss_pred cccccc-CCCCcccccchhhhhc--CCCCcccccchhhccC---ccccccccccccCC---------CCCccccCCcccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEA--RPGSLSKRMPDELEEG---EIAVSGDSHMDHQQ---------SGSWTHDRDEGED 1794 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~--~P~dl~~~i~~~leeg---~ya~~~d~~~D~~~---------~~Sw~~~~~~~~d 1794 (2239)
..+.+| .+|+ |+||.+|+ +||||++ |..+|+.| +|.+..++..|+.+ +++.++ ..
T Consensus 92 ~~s~pF~~pV~----~~Yy~iIk~~~PMDL~t-Ik~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~~s~~~-----~~ 161 (189)
T 2ro1_A 92 EPCRPLHQLAT----DSTFSLDQPGGTLDLTL-IRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADV-----QS 161 (189)
T ss_dssp TTHHHHHSCSC----CTTCSSSCSSCCCCHHH-HHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCCSSCSS-----HH
T ss_pred ccchhhcCCCC----hhhhccccCCCcccHHH-HHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCCCCHHH-----HH
Confidence 357788 6666 89999998 7999999 99999999 99999999999999 666666 66
Q ss_pred ccccc
Q 000101 1795 EQVLQ 1799 (2239)
Q Consensus 1795 ~~~~~ 1799 (2239)
+..|+
T Consensus 162 a~~L~ 166 (189)
T 2ro1_A 162 IIGLQ 166 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.064 Score=61.53 Aligned_cols=112 Identities=21% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhc
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAAL 1098 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~ 1098 (2239)
+.-.++.-+||+|||..++.++..+.. ....++|+.|.---. .+ ...+..+ |- .
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r---~~-~~i~srl------G~-------------~ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTR---SI-RNIQSRT------GT-------------S 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGG---GC-SSCCCCC------CC-------------S
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCch---HH-HHHHHhc------CC-------------C
Confidence 333477899999999888888766653 234678776643100 00 0001000 10 0
Q ss_pred CccEEEEehhHHHHhh-hhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCC
Q 000101 1099 KFNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1099 kfdVVITTYE~L~kD~-s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
...+.+.+...+.... ..+....+++|||||+|.+....-.....|.. ....++|+|-
T Consensus 66 ~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 66 LPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGL 124 (223)
T ss_dssp SCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECC
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEec
Confidence 0112233333333222 22333468999999999875432222222222 2567888886
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.27 Score=63.55 Aligned_cols=147 Identities=15% Similarity=0.072 Sum_probs=84.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC-
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV- 1076 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl- 1076 (2239)
..|.|||...+..+. . ....++.-.=|.|||..+.+++++.+... ....++++.|+. ....+...+..++-..
T Consensus 162 ~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 479999999887662 1 33467777899999998877777665432 234688888865 4445556666664221
Q ss_pred ---ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc-cc--cc
Q 000101 1077 ---SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR--CQ 1150 (2239)
Q Consensus 1077 ---kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lk--a~ 1150 (2239)
.......+... .. + ..+..|.+.+ .+...+.....+++||||+|.+.+.. .++.++.. +. ..
T Consensus 237 ~~~~~~~~~~~~~~-i~----~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~ 304 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS-IE----L-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRR 304 (592)
T ss_dssp TTTSCCEEEECSSE-EE----E-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSC
T ss_pred HhhccccccCCccE-EE----e-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCC
Confidence 11111001000 00 0 0122222222 11233445578999999999997742 44444443 22 34
Q ss_pred eEEEecCCCCCC
Q 000101 1151 RRLLLTGTPLQN 1162 (2239)
Q Consensus 1151 rRLLLTGTPIQN 1162 (2239)
.++++++||-..
T Consensus 305 ~~ii~isTP~~~ 316 (592)
T 3cpe_A 305 SKIIITTTPNGL 316 (592)
T ss_dssp CEEEEEECCCTT
T ss_pred ceEEEEeCCCCc
Confidence 688888999554
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.27 Score=56.24 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=26.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-.||+|||..++.++..+.. ....+||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 46899999999888887765543 345788888754
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.097 Score=65.64 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=68.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcCc
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKF 1100 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~kf 1100 (2239)
.++...-|+|||-....++. ..+.|||+|+. +...|.+.+.+.. .. ..-
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~------------~~~ 213 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------II------------VAT 213 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------CC------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc------------ccc
Confidence 36778899999976655441 25789999977 6777888774320 00 011
Q ss_pred cEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEEecCCCCCC
Q 000101 1101 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1162 (2239)
Q Consensus 1101 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLLLTGTPIQN 1162 (2239)
++-|.|++.+...........+++|||||+..+- ...+...+..+.+ .+++|.|-|-|-
T Consensus 214 ~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 2347788877654443333458999999998652 2333333333444 789999988653
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.28 Score=54.91 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=26.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
.++.-.||+|||..++.++..+.. ....++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 367889999999888877766543 33578888876
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.55 Score=55.41 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=56.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcC
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALK 1099 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~k 1099 (2239)
.+.+|.-+.|+|||..+-++...+... ..+++.|....+...+...+... .
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~-----------~--------------- 88 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG-----------T--------------- 88 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT-----------C---------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC-----------c---------------
Confidence 456899999999998887777666532 34556555444544444443220 0
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEecccccccC---hhhHHHHHhhcc-ccceEEEecCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD---RESVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN---~~SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
.+.+.. .+ ...++|||||+|.+.. ....+...+..+ ....++++|+|
T Consensus 89 -------~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 89 -------INEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------HHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------HHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 000110 11 1367999999999864 223344444433 34457888776
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.21 Score=59.74 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHH
Q 000101 1001 LRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Li 1044 (2239)
++|+|.+.+..+...+.++. + -+|.-+.|+|||..+.++...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 57889999888887765543 2 48899999999999988887765
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.12 Score=60.07 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAV 1061 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~-~GP~LIVVP~SL 1061 (2239)
.+.+|.-+.|+|||..+-++...+...... .++++.|.+..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 346899999999999988777766542211 235555544433
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.31 E-value=0.51 Score=54.69 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=25.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-.||+|||..+|..+.... .....+||+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 6788999999988777665443 3445788887753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.64 Score=50.12 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=26.1
Q ss_pred CCceEEEecccccccCh-hhHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
....+|||||+|.+... ...+...+.......++++|+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 46789999999998532 23344455555556677776654
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.44 Score=56.11 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=28.8
Q ss_pred CceEEEeccccccc--ChhhHHHHHhhccccceEEEecCCCCC
Q 000101 1121 DWKYIIIDEAQRMK--DRESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1121 kWd~VIIDEAHrIK--N~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
...+|||||+|.+. .....+.+.+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 233445555666666778888777643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=90.19 E-value=1.1 Score=47.19 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
.+.+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999888777766543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=1.6 Score=47.34 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
++..+..+...+..-......+|.-+.|+|||..+-.+...+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555554444321111245899999999998776665544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=2.9 Score=44.98 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
.+.|..++..+..... .+.+.+|.-+.|+|||..+-+++..+....+ ..++++.-..++..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFDTKDLIFRLKHLM 86 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHh
Confidence 3568888887776553 3455688899999999888777766653332 2444444444554444333
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.54 E-value=0.63 Score=55.48 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=25.6
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
+|.+|||||+|+|.. ....+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 689999999999953 22235555666555666666543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.52 E-value=0.54 Score=55.78 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
.+.||.-+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTTG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhccc
Confidence 356899999999998887776543 23555555555544443
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.43 E-value=1.1 Score=47.32 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
..+.+|.-+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34568899999999988877766654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.38 E-value=0.57 Score=55.25 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=26.8
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+.+|||||+|++.. ....+.+.+.......+++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 578999999999853 234456666666666677776554
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.69 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2239)
...+.+|.-+.|+|||..+-++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345568999999999988766654
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=0.54 Score=56.90 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL 1062 (2239)
.+.||.-+.|+|||..+-++...+ ..+++.|....++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh
Confidence 456899999999999887776654 2355555444444
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=88.51 E-value=0.98 Score=49.78 Aligned_cols=37 Identities=16% Similarity=-0.074 Sum_probs=24.8
Q ss_pred HHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1008 GLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1008 GLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Li 1044 (2239)
.+.++..... .+.+.+|.-+.|+|||..+-++...+.
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444443333 345568999999999988877766554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=1.6 Score=54.49 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=56.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHhhcC
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALK 1099 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~~~k 1099 (2239)
.+.+|.-+.|+|||..+-++..++... ....+++.|....+...+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 356899999999998887777666543 2233555554444444333333210
Q ss_pred ccEEEEehhHHHHhhhhcccCCceEEEecccccccCh---hhHHHHHhhcc-ccceEEEecCC
Q 000101 1100 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1158 (2239)
Q Consensus 1100 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~L-ka~rRLLLTGT 1158 (2239)
....+. ..+ ....++|||||+|.+... ...+...+..+ .....+++|.+
T Consensus 183 ------~~~~~~---~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 ------KLNEFR---EKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp ------CHHHHH---HHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred ------cHHHHH---HHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 000111 111 125789999999999652 33445555543 33456666654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.27 E-value=1.2 Score=52.99 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHH-HhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWML-SLYNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLl-sL~~n--~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
++.+++.+..++ ..... ..+.+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333 32222 234688999999999988777766654
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=0.84 Score=52.21 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000101 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2239)
..+........+.+|.-+.|+|||..+-++.
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 3344444456778999999999997765554
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.89 E-value=0.33 Score=50.97 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000101 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2239)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2239)
.++........+.+|.-|.|+|||..+-++.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3443444567788999999999998775553
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.13 E-value=1.3 Score=52.52 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
++.++..+...+... ....+.+|.-+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555443333222 23455689999999999888777766543
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.83 E-value=1.8 Score=50.14 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=27.1
Q ss_pred CCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCC
Q 000101 1120 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1120 ikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
.+..+|||||+|++.. ....+.+.+.......++++|++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4678999999999843 233455555555566677777654
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=86.71 E-value=3.4 Score=52.80 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=55.4
Q ss_pred HHHHHHHH-HhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecC-CCCHHHHHHHHHHHhcCCCCccEEEEec--cccc
Q 000101 1332 LDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--RAAG 1407 (2239)
Q Consensus 1332 LdrIL~kL-katGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDG-sts~eeRqeiL~~FNs~ds~~~VfLLST--rAGG 1407 (2239)
+.+.|..+ ...+.++|||+..-..++.+.+. .++.+. +.| +++ +..+++.|...+ . .+|+++ ....
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~~~ 450 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDSS---VEDLYSAISANN-K--VLIGSVGKGKLA 450 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSCC---HHHHHHHTTSSS-S--CEEEEESSCCSC
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCCC---HHHHHHHHHhcC-C--eEEEEEecceec
Confidence 33333333 44567899999888888877763 344433 333 333 456888886322 2 367776 6999
Q ss_pred cccCCC-----cCceEEEcCCCC
Q 000101 1408 RGLNLQ-----SADTVIIYDPDP 1425 (2239)
Q Consensus 1408 eGLNLq-----aADtVIifDppW 1425 (2239)
+|||++ .+..||+.-.|+
T Consensus 451 EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 451 EGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CSSCCEETTEESEEEEEEESCCC
T ss_pred ccccccccCCcceeEEEEEcCCC
Confidence 999999 378999987765
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=85.76 E-value=0.32 Score=51.06 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHH
Q 000101 1016 YNNKLNGILADEMGLGKTVQVMAL 1039 (2239)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIAL 1039 (2239)
.....+.+|.-+.|+|||..+-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345677899999999999776544
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.89 E-value=1.1 Score=51.99 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=25.9
Q ss_pred CceEEEecccccccCh-hhHHHHHhhccccceEEEecCCC
Q 000101 1121 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~-~SKlskaLk~Lka~rRLLLTGTP 1159 (2239)
+..+|||||+|.+... ...+.+.+.......+++++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 4789999999998532 22344555555566677777654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=84.55 E-value=1.8 Score=51.65 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhcCCC----CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000101 1002 RDYQIVGLQWMLSLYNNKL----NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2239)
Q Consensus 1002 RPYQleGLqwLlsL~~n~l----nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP 1058 (2239)
.+..+..+.++......+. +.+|.-+.|+|||..+-++...+ +...+++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL----GPDTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH----CSSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh----cccCCcccccc
Confidence 4566677777776665433 46899999999998887776654 22346655553
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.06 E-value=2.7 Score=48.26 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
++.-+||+|||...+-.+..+.. ....+||+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 67888999999777666544432 235678888854
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.88 E-value=2.7 Score=47.44 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S 1060 (2239)
.+.+|.-+.|+|||..+-++...+ ..+++.|....
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAE 74 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHH
Confidence 446899999999998887665533 23555554443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=83.83 E-value=2.6 Score=50.02 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=25.3
Q ss_pred CceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1121 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
++.+|||||+|.+.. ....+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 578999999999843 22334455555555667777665
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.74 E-value=1.5 Score=53.46 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQ 1064 (2239)
..+.||.-+.|+|||..+-++... ...+++.|....+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSK 187 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhcc
Confidence 356689999999999888666432 1245555555545443
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=1.8 Score=48.84 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=23.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000101 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2239)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~ 1059 (2239)
++.-.||+|||...+-.+..+.. . ...+|++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~-~--~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI-A--QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEccc
Confidence 67889999999666665554443 2 2567888775
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.26 E-value=10 Score=45.68 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=28.8
Q ss_pred hHHHHHHHH-HHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000101 1002 RDYQIVGLQ-WMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2239)
Q Consensus 1002 RPYQleGLq-wLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lie 1045 (2239)
|+-|..-+. ++..... ...+.+|.-..|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555554 3333332 2334578999999999999888877764
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=82.11 E-value=1.5 Score=54.72 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
.+.||.-+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999998887776543 23355555555555444
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=81.95 E-value=2.9 Score=48.24 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
..+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999998887665544
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.29 E-value=2.3 Score=52.81 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
..|.||.-..|+|||+.|-++...+ ..+++.|....++..|.-|-.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchHH
Confidence 4567999999999999988877543 236777777777766654433
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.02 E-value=2.3 Score=51.40 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SL 1061 (2239)
..+.+|.-+.|+|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4456899999999998887665432 235555544444
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=80.53 E-value=0.49 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 000101 1022 GILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~L 1043 (2239)
.++.-..|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4678899999999887765543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.48 E-value=2.5 Score=49.71 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW 1065 (2239)
..+.+|.-+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 4556899999999998887665432 2355555545555444
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.06 E-value=1.3 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (2239)
.+.||.-+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999998887776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2239 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 4e-47 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 5e-44 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-31 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-17 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-14 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 5e-14 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-12 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 3e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 8e-06 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 4e-05 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 7e-04 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 8e-04 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 8e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.002 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 0.004 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 167 bits (422), Expect = 4e-47
Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
+P ++ LR YQI G WM + LAD+MGLGKT+Q +A+ + +
Sbjct: 5 EPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELT 62
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM 1111
P L+I P +VL NW+ EL K+ P + + + + +++++TTY ++
Sbjct: 63 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKL-------EDYDIILTTYAVLL 115
Query: 1112 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL 1171
D +L +V+WKYI+IDEAQ +K+ ++ + + + + + R+ LTGTP++N + +LWS++
Sbjct: 116 RDT-RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIM 174
Query: 1172 NLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1231
L P + + F F+ P +K L I+ PF+LRR
Sbjct: 175 TFLNPGLLGSYSEFKSKFATPIKKGDNMA---------------KEELKAIISPFILRRT 219
Query: 1232 VED--VEGSLP 1240
D + LP
Sbjct: 220 KYDKAIINDLP 230
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 160 bits (405), Expect = 5e-44
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 19/249 (7%)
Query: 998 AGTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
+ LR +Q G++++ N I+ADEMGLGKT+Q + LI L++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1053 H----LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQRSRLFSQVAA-----LKFN 1101
+++ P++++ NW +E+ KWL G+KD+ + +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1102 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1161
+L+ +YE L K +I DE R+K+ ++ L+ QRR+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 1162 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1221
NDL E +SL++ + + + F F P K +AD + + L
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR---DADASDKDRAAGEQKLQELIS 289
Query: 1222 ILEPFMLRR 1230
I+ ++RR
Sbjct: 290 IVNRCLIRR 298
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 125 bits (314), Expect = 2e-31
Identities = 85/350 (24%), Positives = 142/350 (40%), Gaps = 68/350 (19%)
Query: 1238 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297
LP K+ V+ C ++ +Q +Y K+ + K+ + +
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFL------------KQAKPVESLQTGKISVSSLSSI 55
Query: 1298 MELRKTCNHPLLNYPYFSDLSK----------------DFLVKSCGKLWILDRILIKLQR 1341
L+K CNHP L Y + + GK+ +LD IL +
Sbjct: 56 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRT 115
Query: 1342 -TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1400
T +V+L S T+ LD+ E+ + R+ +Y R+DGT S++ R + FN+ S FIF+
Sbjct: 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 175
Query: 1401 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1460
LS +A G GLNL A+ ++++DPD NP N+EQA+AR R GQK+ + + +
Sbjct: 176 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST------ 229
Query: 1461 HQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 1520
G+IE I Q +K ++ V++ + +R
Sbjct: 230 --------------------------GTIEEKIL-QRQAHKKALSSCVVDEEQDVERHFS 262
Query: 1521 EERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 1570
L +L +E+ +T HD R + + D
Sbjct: 263 LGELRELFSL--NEKTLSDT-HD---RFRCRRCVNGRQVRPPPDDSDCTC 306
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 81.3 bits (199), Expect = 3e-17
Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 53/289 (18%)
Query: 1242 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1301
K+ + C ++ Q+A+Y +D +R + + ++L+
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR-----------KGMILSTLLKLK 49
Query: 1302 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1361
+ +HP L V+ GK+ I+ + G ++ +F+ + I+
Sbjct: 50 QIVDHPALLKGGE------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 103
Query: 1362 YLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420
++ + G S ++R+ I F ++ S FI L S++A G G+NL SA+ VI
Sbjct: 104 IIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSANRVIH 162
Query: 1421 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1480
+D NP E+QA R +RIGQ R V V + +V
Sbjct: 163 FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV-------------------------- 196
Query: 1481 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAG-RFDQRTTHEERRMTLE 1528
G++E I + +K + ++I++G + + EE R +E
Sbjct: 197 ------GTLEEKID-QLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 238
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 73.8 bits (180), Expect = 2e-14
Identities = 32/266 (12%), Positives = 79/266 (29%), Gaps = 29/266 (10%)
Query: 1209 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS--------IVLRCRMSAIQSAIYD 1260
E + L ++L + + S P + ++ M+ +
Sbjct: 12 PEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRG 71
Query: 1261 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK- 1319
+ + + K L + + +
Sbjct: 72 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISL 131
Query: 1320 ----DFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1373
+ K+ L I+ + ++ ++++F+ + + L + +R
Sbjct: 132 LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 191
Query: 1374 DGTTSLEDR--------ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 1425
G S E+ + + +F + + L++ GL++ D V+ Y+P P
Sbjct: 192 VGQASKENDRGLSQREQKLILDEFARGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVP 248
Query: 1426 NPKNEEQAVARAHRIGQKREVKVIYM 1451
+ Q R R G+ +VI +
Sbjct: 249 SAIRSIQ---RRGRTGRHMPGRVIIL 271
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 71.1 bits (173), Expect = 5e-14
Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 24/168 (14%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
P +LRDYQ L+ L G + G GKT A + +
Sbjct: 62 TPYFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHV-----AMAAINELSTP 112
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIM 1111
+++ A+ WK L + + K+ + +TY+
Sbjct: 113 TLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTV------------STYDSAY 160
Query: 1112 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1159
+ KL + +I DE + + RL LT T
Sbjct: 161 VNAEKLGN-RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATF 205
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.5 bits (161), Expect = 2e-12
Identities = 27/213 (12%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 1238 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1297
L + ++ + Y+ + + R + + +A+ + +
Sbjct: 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYK-------QFLRARGITLRRAEDFNKIVMAS 54
Query: 1298 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1357
+ + ++ S K+ L IL + + ++++F+ +L+
Sbjct: 55 GYDERAYEALRAW-----EEARRIAFNSKNKIRKLREILERHR--KDKIIIFTRHNELVY 107
Query: 1358 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1417
+ + I TS E+RE + + F ++S + G+++ A+
Sbjct: 108 RISKVFL-----IPAITHRTSREEREEIL---EGFRTGRFRAIVSSQVLDEGIDVPDANV 159
Query: 1418 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450
+I + + Q + R R + ++ V+Y
Sbjct: 160 GVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 192
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
R YQ V + N ++ GLGKT+ +A++ G L++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTL--IAMMIAEYRLTKYGGKVLMLAPT 61
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFI--MYDRSKL 1117
LV +E + L ++ V ++S A + V+V T + I ++
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 1118 SKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRR-LLLTGTPLQNDLKELWSLLNLL 1174
S D I+ DEA R +AR+ R + LT +P + +++ ++N L
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP-GSTPEKIMEVINNL 180
Query: 1175 LPEVFDNRK 1183
E + R
Sbjct: 181 GIEHIEYRS 189
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 45.4 bits (106), Expect = 8e-06
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 16/149 (10%)
Query: 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP 1074
+ + +L G GKT + + I + L + ++ +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1134
+ + + + + V+W+ II+DEA +
Sbjct: 63 FHTQAFSAHGSGR-----------EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL- 110
Query: 1135 DRESVLARDLDRYRCQRR----LLLTGTP 1159
D S+ AR +R + +L+T TP
Sbjct: 111 DPASIAARGWAAHRARANESATILMTATP 139
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 45.7 bits (107), Expect = 4e-05
Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 15/180 (8%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
YQ + L LN G+++ L Y +E LIIVP
Sbjct: 112 IEPHWYQKDAVFEGLVNRRRILN----LPTSAGRSLIQALLARYYLENYEGKI--LIIVP 165
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKL 1117
L + + + + A V+V T++ + + K
Sbjct: 166 TTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDA---PVVVGTWQ-TVVKQPKE 221
Query: 1118 SKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQRRLLLTGTPLQNDLKELWSLLNLLLP 1176
+ ++ DE + ++ + C + L+G+ + +
Sbjct: 222 WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRDGKANI-MQYVGMFGE 278
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.3 bits (96), Expect = 7e-04
Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 18/245 (7%)
Query: 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1387
+ L IL ++ G ++++ + + + E L+ + ++
Sbjct: 13 SISTLSSIL---EKLGTGGIIYARTGEEAEEIYESLK------NKFRIGIVTATKKGDYE 63
Query: 1388 DFNSHDSDCFIFLLSIRA-AGRGLNLQSA-DTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1445
F + D I RGL+L + + + + +
Sbjct: 64 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMV 119
Query: 1446 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1505
+ Y+ VD+I E ++ + GK+R + ++ + D+
Sbjct: 120 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER--PQAKDVVVREGEVIFPDLR 177
Query: 1506 DEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFD 1565
+ +GR R LL D+ + L ++ D +L
Sbjct: 178 TYIQGSGRTS-RLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSR 236
Query: 1566 QMDEE 1570
++DE
Sbjct: 237 ELDES 241
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 8e-04
Identities = 10/57 (17%), Positives = 27/57 (47%)
Query: 1986 DLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2042
DL I + + + +Y + DV +L ++++ G + A+++ ++ + L
Sbjct: 52 DLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLT 108
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 40.2 bits (93), Expect = 8e-04
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1390
++ I +++R R L+ + K+ + L +YL+ + + +R I D
Sbjct: 20 LIGEIRERVER-NERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR 78
Query: 1391 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-----PNPKNEEQAVARAHRIGQKRE 1445
D + I GL++ V I D D + ++ Q + RA R
Sbjct: 79 LGKYDVLV---GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
Query: 1446 VKVIYMEAVVDKISSHQKE 1464
+ +I+ + +
Sbjct: 136 IMYADTITKSMEIAIQETK 154
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 38.3 bits (88), Expect = 0.002
Identities = 23/143 (16%), Positives = 35/143 (24%), Gaps = 22/143 (15%)
Query: 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVSCIY 1080
L G GK+ +V A L++ P+ + + + K I
Sbjct: 11 AHLHAPTGSGKSTKV---PAAYAAQGYKV---LVLNPSVAATLGFGAYMSKAHGVDPNIR 64
Query: 1081 YVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK---DRE 1137
T +F+ D II DE
Sbjct: 65 TGVRTITTGS---------PITYSTYGKFLADGGCSGGAYD--IIICDECHSTDATSILG 113
Query: 1138 SVLARDLDRYRCQRRLLL-TGTP 1159
D R ++L T TP
Sbjct: 114 IGTVLDQAETAGARLVVLATATP 136
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.0 bits (87), Expect = 0.004
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%)
Query: 1321 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1380
V + L R+L + L+F + L L+ I G S
Sbjct: 9 VEVNENERFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQS 65
Query: 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1440
RE I F I + RG+++ + VI Y NP++ + R R
Sbjct: 66 QREKVIRLFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRA 122
Query: 1441 GQKREVKVIYMEAVVDKISSHQK 1463
G+K + I K+ ++
Sbjct: 123 GKKGKAISIINRREYKKLRYIER 145
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2239 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.81 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.79 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.77 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.75 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.74 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.74 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.73 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.73 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.73 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.73 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.72 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.71 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.7 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.7 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.7 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.68 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.63 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.62 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.55 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.55 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.49 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.47 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.41 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.33 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.3 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.28 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.24 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.24 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.23 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.21 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.17 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.16 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.13 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.12 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.07 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.02 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.01 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.98 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.96 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.83 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.79 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.67 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.15 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.97 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 97.92 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 97.88 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.87 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 97.65 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 97.47 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.0 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.4 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.89 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.71 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 95.62 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 93.73 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.73 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.49 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.48 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.8 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 88.8 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.43 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 87.37 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.15 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 85.83 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.64 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.41 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 84.94 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.09 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 82.65 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.76 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.2e-39 Score=358.83 Aligned_cols=225 Identities=33% Similarity=0.674 Sum_probs=197.5
Q ss_pred cCCccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000101 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2239)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~ 1070 (2239)
-+|..+.. +|+|||++||.||..+...+.|||||||||||||+++|+++.+++. .....++|||||.+++.||..|+.
T Consensus 4 ~~P~~~~~-~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~-~~~~~~~LIv~p~~l~~~W~~e~~ 81 (230)
T d1z63a1 4 LEPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELS 81 (230)
T ss_dssp CCCCSCSS-CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHH
T ss_pred cCchhhhc-chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhh-cccccccceecchhhhhHHHHHHH
Confidence 37877765 8999999999999999999999999999999999999999988875 566679999999999999999999
Q ss_pred HHCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccc
Q 000101 1071 KWLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1071 KwaPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~ 1150 (2239)
+|++...+..+.+.... .....++|+|+||+.+.+. ..+...+|++||+||||+++|..+..++++..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~-------~~~~~~~vvi~~~~~~~~~-~~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~ 153 (230)
T d1z63a1 82 KFAPHLRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSK 153 (230)
T ss_dssp HHCTTSCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTC-HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEE
T ss_pred hhcccccceeeccccch-------hhccCcCEEEeeHHHHHhH-HHHhcccceEEEEEhhhcccccchhhhhhhhhhccc
Confidence 99998887777655433 2345789999999999765 446788999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhH
Q 000101 1151 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1230 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRR 1230 (2239)
+||+|||||++|++.|||++++||+|+.|++...|.+.|..++.... .....+|+.+|+||++||
T Consensus 154 ~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~---------------~~~~~~L~~~l~~~~lRr 218 (230)
T d1z63a1 154 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRR 218 (230)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECC
T ss_pred eEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhccC---------------HHHHHHHHHHhhccEEEE
Confidence 99999999999999999999999999999999999999887765431 123567999999999999
Q ss_pred hHhh--hhcCCC
Q 000101 1231 RVED--VEGSLP 1240 (2239)
Q Consensus 1231 lKkD--VekdLP 1240 (2239)
+|.| |.++||
T Consensus 219 ~K~d~~v~~dLP 230 (230)
T d1z63a1 219 TKYDKAIINDLP 230 (230)
T ss_dssp CTTCHHHHTTSC
T ss_pred ecCCccHhhcCC
Confidence 9999 677887
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=8.4e-39 Score=372.66 Aligned_cols=229 Identities=27% Similarity=0.465 Sum_probs=189.4
Q ss_pred CCChHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechHHHHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNAVLVNWKSEL 1069 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~----~GP~LIVVP~SLLsQW~~Ef 1069 (2239)
..|||||++||+||+.++ .++.|||||||||||||+|+|+++.+++..... .+++|||||.+++.||..||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHHHHH
Confidence 489999999999998765 456789999999999999999999998875433 34699999999999999999
Q ss_pred HHHCCC-CceEEEecchhh-HHHHHHH-H----hhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHH
Q 000101 1070 HKWLPS-VSCIYYVGAKDQ-RSRLFSQ-V----AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1142 (2239)
Q Consensus 1070 ~KwaPs-lkvvvy~Gskd~-Rk~l~~~-i----~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlsk 1142 (2239)
.+|++. +.+++++|.... ....... . ....++|+|+||+.+..+...+..++|++|||||||+++|..++.++
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~ikn~~s~~~~ 213 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeecccccccccccchhhh
Confidence 999975 455555554332 2222211 1 12356799999999999999999999999999999999999999999
Q ss_pred HhhccccceEEEecCCCCCCCHHHHHHHHhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000101 1143 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1222 (2239)
Q Consensus 1143 aLk~Lka~rRLLLTGTPIQNnL~ELwsLLnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhkl 1222 (2239)
++..+++.+||+|||||++|++.|||++++||.|+.|++...|.++|..|+.........+. ........+.+|+.+
T Consensus 214 a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~---~~~~~~~~l~~L~~~ 290 (298)
T d1z3ix2 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK---DRAAGEQKLQELISI 290 (298)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH---HHHHHHHHHHHHHHH
T ss_pred hhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcHH---HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876544333332 222233457789999
Q ss_pred hhhHHhhH
Q 000101 1223 LEPFMLRR 1230 (2239)
Q Consensus 1223 LrPFmLRR 1230 (2239)
|+||+|||
T Consensus 291 l~~~~lRR 298 (298)
T d1z3ix2 291 VNRCLIRR 298 (298)
T ss_dssp HHHHEECC
T ss_pred hhhheeCC
Confidence 99999997
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=6e-37 Score=365.80 Aligned_cols=235 Identities=33% Similarity=0.507 Sum_probs=195.2
Q ss_pred hhh-cCCCCceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000101 1234 DVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1312 (2239)
Q Consensus 1234 DVe-kdLP~K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p 1312 (2239)
+|+ +.||+|++++++|+||+.|+.+|+.+........... .. .....+++.++.||++||||+|+..
T Consensus 3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~-------~~-----~~~~~~L~~l~~LRkiCnHP~L~~~ 70 (346)
T d1z3ix1 3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ-------TG-----KISVSSLSSITSLKKLCNHPALIYE 70 (346)
T ss_dssp GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC-------TT-----CCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhh-------cC-----CchHHHHHHHHHHHHHhCCHHHhhh
Confidence 444 6899999999999999999999998866432111100 00 0113456788999999999987432
Q ss_pred Cc-------c---------ccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecC
Q 000101 1313 YF-------S---------DLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1375 (2239)
Q Consensus 1313 ~~-------~---------~~s~d~Li~~SGKLelLdrIL~kLk-atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDG 1375 (2239)
.. . ..........|+|+.+|.+||..+. ..|+||||||+|+.++++|+.+|..+|+.|++|+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G 150 (346)
T d1z3ix1 71 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 150 (346)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred hhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhcccccccc
Confidence 10 0 0111223567999999999999885 66899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhh
Q 000101 1376 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV 1455 (2239)
Q Consensus 1376 sts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVE 1455 (2239)
+|+.++|..+++.||.++...+|||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++
T Consensus 151 ~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~-- 228 (346)
T d1z3ix1 151 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS-- 228 (346)
T ss_dssp SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE--
T ss_pred chhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEe--
Confidence 999999999999999877778899999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhhhhccCCccccchhhcccchhhhhHHHHHHHHHHHhhHHHHHHHHhccc
Q 000101 1456 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 1513 (2239)
Q Consensus 1456 EkI~s~q~eKe~ls~gtvdle~dl~gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAGk 1513 (2239)
.++||++|+++ +..|..+.+.|++.+.
T Consensus 229 ------------------------------~~TiEe~i~~~-~~~K~~l~~~v~~~~~ 255 (346)
T d1z3ix1 229 ------------------------------TGTIEEKILQR-QAHKKALSSCVVDEEQ 255 (346)
T ss_dssp ------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCSS
T ss_pred ------------------------------CCCHHHHHHHH-HHHHHHHHHHHhCCch
Confidence 37999999984 5778888888886543
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-33 Score=320.80 Aligned_cols=220 Identities=25% Similarity=0.351 Sum_probs=172.4
Q ss_pred ceEEEEEeccCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhh
Q 000101 1242 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF 1321 (2239)
Q Consensus 1242 K~e~VV~c~MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~ 1321 (2239)
|++.+++|+||+.|+++|+.+.......+... ........+++.+++||++|+||+++.... .
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~-----------~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~------~ 63 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----------TGIKRKGMILSTLLKLKQIVDHPALLKGGE------Q 63 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHHHHHHHHTTCTHHHHCSC------C
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----------ccchhHHHHHHHHHHHHhhhcCCccccccc------c
Confidence 67899999999999999998876532211110 011123456788899999999998864322 2
Q ss_pred HhhcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000101 1322 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1400 (2239)
Q Consensus 1322 Li~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r-Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfL 1400 (2239)
.+..|+|+..|.++|.++...|+||||||+|+.++++|+.+|... |+.+.++||+++.++|.+++++|++ +..+.+||
T Consensus 64 ~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vll 142 (244)
T d1z5za1 64 SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSVKFIV 142 (244)
T ss_dssp CSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH-CTTCCEEE
T ss_pred chhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhc-cccchhcc
Confidence 345689999999999999999999999999999999999999765 8999999999999999999999987 44568999
Q ss_pred EeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEehhhhhhhhhhhhhhhccCCccccchhhc
Q 000101 1401 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1480 (2239)
Q Consensus 1401 LSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLvaVEEkI~s~q~eKe~ls~gtvdle~dl~ 1480 (2239)
+++.+||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 143 ~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~--------------------------- 195 (244)
T d1z5za1 143 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------------------- 195 (244)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE---------------------------
T ss_pred ccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999966
Q ss_pred ccchhhhhHHHHHHHHHHHhhHHHHHHHHhcc
Q 000101 1481 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1512 (2239)
Q Consensus 1481 gkd~~~~SIEE~Ile~lqq~Kldi~dkVIqAG 1512 (2239)
.+|||+.|++. ...|..+.+.+++.+
T Consensus 196 -----~~Tiee~i~~~-~~~K~~~~~~~~~~~ 221 (244)
T d1z5za1 196 -----VGTLEEKIDQL-LAFKRSLFKDIISSG 221 (244)
T ss_dssp -----TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred -----CCCHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 37899999985 467888888888664
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.4e-20 Score=189.90 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=99.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHH
Q 000101 1932 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2011 (2239)
Q Consensus 1932 ~kl~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qL 2011 (2239)
.+.++.+...|++||+.|..+ ..+..|+.+|++.++||||++ |++||||.+|.+||++++|.++++|..||.|
T Consensus 8 ~~~~~~l~~~l~~il~~l~~~------~~a~~F~~pv~~~~~pdY~~i-I~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~l 80 (118)
T d1wuma1 8 PRDPDQLYSTLKSILQQVKSH------QSAWPFMEPVKRTEAPGYYEV-IRFPMDLKTMSERLKNRYYVSKKLFMADLQR 80 (118)
T ss_dssp CCSHHHHHHHHHHHHHHHHHS------SSCHHHHSCCCSSSSSSCTTT-CSSCCCHHHHHHHHTTTCCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhC------CCcCcccCCCChhhCcCHHHH-cCChhhHHHHHHHhcccccCchHHHHHHHHH
Confidence 367788999999999999664 468999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2012 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2012 M~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
||.||+.||+++|++|.+|..|+++|.++|+.+
T Consensus 81 i~~Na~~yn~~~s~~~~~A~~l~~~f~~~~~e~ 113 (118)
T d1wuma1 81 VFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113 (118)
T ss_dssp HHHHHHHHSCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999864
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.4e-20 Score=206.59 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=105.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
..+.|+..|.++|.+. .++|+||||++..+++.|.+.|. +..+||.++.++|..++++|++++ +. +|++|
T Consensus 76 ~~~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~--~~-vLv~~ 145 (200)
T d2fwra1 76 NSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR--FR-AIVSS 145 (200)
T ss_dssp SCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS--CS-BCBCS
T ss_pred CcHHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCC--ee-eeeec
Confidence 3467999999999863 57899999999999999988773 445899999999999999999754 44 47899
Q ss_pred cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc-eEEEEEEeh
Q 000101 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1453 (2239)
Q Consensus 1404 rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK-eV~VyrLva 1453 (2239)
+++++||||+.|++||+||++|||..++||+||++|+||.+ .|.||+|++
T Consensus 146 ~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 146 QVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp SCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred chhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 99999999999999999999999999999999999999965 689998865
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1e-19 Score=181.88 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHh
Q 000101 1936 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2015 (2239)
Q Consensus 1936 ~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~N 2015 (2239)
+.+...|++|+++|..+ ..+..|+.+|++.++||||++ |++||||.+|.+||++++|.++++|..||.|||.|
T Consensus 1 d~L~~~l~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 73 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKSH------PSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIAN 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHS------GGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhC------CCCCccCCCCChhhCcCHHHH-cCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHH
Confidence 35677899999999764 457899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2016 AMQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2016 a~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
|+.||+++|.+|.+|..|+++|.++||.
T Consensus 74 a~~yN~~~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 74 CREYNPPDSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=4.4e-19 Score=195.95 Aligned_cols=142 Identities=28% Similarity=0.303 Sum_probs=110.3
Q ss_pred CccccCCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHH
Q 000101 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHK 1071 (2239)
Q Consensus 993 Ps~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~K 1071 (2239)
|..-...+|||||.+++++++. +.+|||+++||+|||++++.++..+ .+++|||||. .|+.||.++|.+
T Consensus 63 ~~~~~~~~Lr~yQ~eav~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~~~ 132 (206)
T d2fz4a1 63 PYFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGI 132 (206)
T ss_dssp CCCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCCCCCCCcCHHHHHHHHHHHh----CCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHHHh
Confidence 4333345899999999988764 5678999999999999988776543 3589999995 588999999999
Q ss_pred HCCCCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccce
Q 000101 1072 WLPSVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1151 (2239)
Q Consensus 1072 waPslkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~r 1151 (2239)
|.+. .+..+.|... ....|+|+||+.+......+. .+|++|||||||++++. ...+.+..+.+.+
T Consensus 133 ~~~~-~~~~~~~~~~-----------~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDEaH~~~a~--~~~~i~~~~~~~~ 197 (206)
T d2fz4a1 133 FGEE-YVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAE--SYVQIAQMSIAPF 197 (206)
T ss_dssp GCGG-GEEEESSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTT--THHHHHHTCCCSE
T ss_pred hccc-chhhcccccc-----------cccccccceehhhhhhhHhhC-CcCCEEEEECCeeCCcH--HHHHHHhccCCCc
Confidence 8754 3445555432 245799999999987755443 37999999999999753 3556677788999
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
+|+||||+
T Consensus 198 ~lgLTATl 205 (206)
T d2fz4a1 198 RLGLTATF 205 (206)
T ss_dssp EEEEEESC
T ss_pred EEEEecCC
Confidence 99999996
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=7.3e-19 Score=178.07 Aligned_cols=101 Identities=14% Similarity=0.267 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000101 1940 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2019 (2239)
Q Consensus 1940 ~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~~y 2019 (2239)
+.|++||++|..+ ..+..|+.+|++.++|+||++ |++||||.+|..||++++|.++++|..||.|||.||+.|
T Consensus 6 ~~l~~il~~l~~~------~~a~pF~~pvd~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 78 (111)
T d1e6ia_ 6 AAIQNILTELQNH------AAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 78 (111)
T ss_dssp HHHHHHHHHHHHS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------CCChhhcCCCCchhCcCHHHH-cCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH
Confidence 4799999999665 348899999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000101 2020 YGFSHEVRSEARKVHDLFFDLLKIAFPDT 2048 (2239)
Q Consensus 2020 n~~~sev~~dA~~L~~~f~~~~k~~fP~~ 2048 (2239)
|+++|.+|.+|..|+++|.++|+. +|+.
T Consensus 79 N~~~s~i~~~A~~l~~~f~~~~~~-ipe~ 106 (111)
T d1e6ia_ 79 NGENTSYYKYANRLEKFFNNKVKE-IPEY 106 (111)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHT-SGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-hhcc
Confidence 999999999999999999999975 6754
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=3e-18 Score=184.55 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=109.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|.++|... .+.|+||||++..+++.|..+|...|+.+..+||+++.++|..++..|+.+... +|++|+
T Consensus 16 ~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~Td 90 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSD 90 (171)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESS
T ss_pred HHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccc---cccchh
Confidence 345999999999864 578999999999999999999999999999999999999999999999976555 799999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
++++|||++.+++||+||+|||+..|+||+||++|.|+...|..
T Consensus 91 ~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~ 134 (171)
T d1s2ma2 91 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAIN 134 (171)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEE
T ss_pred HhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEE
Confidence 99999999999999999999999999999999999998875533
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.74 E-value=4.3e-18 Score=194.49 Aligned_cols=267 Identities=17% Similarity=0.143 Sum_probs=165.8
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHH
Q 000101 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2239)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~ 1094 (2239)
+..+.++||...||+|||++++..+....... ...+|||+|+. |+.||.++|...........+.+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~----------- 72 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--GLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRA----------- 72 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHTTTSCCBCCC----------------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--CCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEee-----------
Confidence 44577889999999999987654443322222 35799999977 77889888876543322221111
Q ss_pred HhhcCccEEEEehhHHHHhhh-hcccCCceEEEecccccccChhhHHHHHhhcc---ccceEEEecCCCCCCCHHHHHHH
Q 000101 1095 VAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTPLQNDLKELWSL 1170 (2239)
Q Consensus 1095 i~~~kfdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L---ka~rRLLLTGTPIQNnL~ELwsL 1170 (2239)
.......++++|++.+..... .....++++|||||+|++-.........+..+ .....+++||||.....
T Consensus 73 ~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~------ 146 (305)
T d2bmfa2 73 EHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRD------ 146 (305)
T ss_dssp ---CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC------
T ss_pred cccCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCccee------
Confidence 223456799999998865432 12224689999999999854433333233322 33457889999721110
Q ss_pred HhhhcCcccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHhhhhHHhhHhHhhhhcCCCCceEEEEEec
Q 000101 1171 LNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCR 1250 (2239)
Q Consensus 1171 LnFLlP~iF~s~k~F~e~F~kPf~~~g~~~~~e~d~l~~ee~~lii~RLhklLrPFmLRRlKkDVekdLP~K~e~VV~c~ 1250 (2239)
++... . .+ .......++....
T Consensus 147 ---------------------~~~~~------~--------------------~~------~~~~~~~~~~~~~------ 167 (305)
T d2bmfa2 147 ---------------------PFPQS------N--------------------AP------IMDEEREIPERSW------ 167 (305)
T ss_dssp ---------------------SSCCC------S--------------------SC------EEEEECCCCCSCC------
T ss_pred ---------------------eeccc------C--------------------Cc------ceEEEEeccHHHH------
Confidence 00000 0 00 0000000110000
Q ss_pred cCHHHHHHHHHHHHhcCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHH
Q 000101 1251 MSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW 1330 (2239)
Q Consensus 1251 MS~~Qr~LY~~I~~~~~l~l~~~~ek~~l~k~~~~~~k~~ksL~niImqLRKiCnHP~L~~p~~~~~s~d~Li~~SGKLe 1330 (2239)
. .
T Consensus 168 -------------------------------~---------------------------------~-------------- 169 (305)
T d2bmfa2 168 -------------------------------N---------------------------------S-------------- 169 (305)
T ss_dssp -------------------------------S---------------------------------S--------------
T ss_pred -------------------------------H---------------------------------H--------------
Confidence 0 0
Q ss_pred HHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccc
Q 000101 1331 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1410 (2239)
Q Consensus 1331 lLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGL 1410 (2239)
.+..+...+.++||||.....++.+...|...|+.+..+||++....| ..|..+.. .+|++|++.+.|+
T Consensus 170 ----~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~---~~lvaT~~~~~G~ 238 (305)
T d2bmfa2 170 ----GHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDW---DFVVTTDISEMGA 238 (305)
T ss_dssp ----CCHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCC---SEEEECGGGGTTC
T ss_pred ----HHHHHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccch---hhhhhhHHHHhcC
Confidence 001123357789999999999999999999999999999999865544 35654332 3799999999999
Q ss_pred CCCcCceEE----------EcCCC----------CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1411 NLQSADTVI----------IYDPD----------PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1411 NLqaADtVI----------ifDpp----------WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
|+ .+++|| +||++ -++..+.|++||++|.|+.....+++
T Consensus 239 ~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~ 297 (305)
T d2bmfa2 239 NF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297 (305)
T ss_dssp CC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEE
T ss_pred CC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEE
Confidence 99 566665 34443 46778999999999999887554443
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=6.5e-18 Score=180.93 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+.+|..++..+ ...|+||||++...++.|..+|...|+.+..++|.++.++|..+++.|+.++.. +|+||++
T Consensus 12 e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Tdv 86 (162)
T d1fuka_ 12 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDL 86 (162)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGG
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc---eeecccc
Confidence 45999999998865 468999999999999999999999999999999999999999999999976555 7999999
Q ss_pred cccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1406 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
+++|||++.+++||+||+|||+..|+||+||++|.|++..+..+.
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~ 131 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 131 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEc
Confidence 999999999999999999999999999999999999887655543
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.3e-18 Score=178.75 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhhh
Q 000101 1938 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2017 (2239)
Q Consensus 1938 mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na~ 2017 (2239)
++..|.+|++.|+... .+..|..+++..++||||++ |++||||.+|..||+.++|.++++|..||.|||+||+
T Consensus 27 l~~~l~~il~~l~~~~------~s~pF~~Pvd~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 99 (139)
T d1eqfa1 27 LSSILESIINDMRDLP------NTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSA 99 (139)
T ss_dssp HHHHHHHHHHHHHTST------TCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------CchhhhCCCChhhccCHHHH-cCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHH
Confidence 6778999998886543 37889999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2018 QFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2018 ~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
.||+++|.+|.+|..|+++|.++|+..
T Consensus 100 ~yN~~~s~i~~~A~~L~~~~~~~~~~~ 126 (139)
T d1eqfa1 100 TYNGPKHSLTQISQSMLDLCDEKLKEK 126 (139)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=8.1e-18 Score=181.09 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=109.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1403 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST 1403 (2239)
..+.|+..|.++|..+ .+.|+||||++...++.|.++|...|+.+..+||+++.++|..+++.|++++.. +|++|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce---eeecc
Confidence 3467999999999875 467999999999999999999999999999999999999999999999975544 68999
Q ss_pred cccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEE
Q 000101 1404 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1448 (2239)
Q Consensus 1404 rAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~V 1448 (2239)
+++++|||++.+++||+||+|||+..|+||+||++|.|++..|..
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~ 129 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 129 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEE
Confidence 999999999999999999999999999999999999998776633
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.6e-18 Score=173.69 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHH
Q 000101 1935 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2012 (2239)
Q Consensus 1935 ~~~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~l--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM 2012 (2239)
++.+++.|..++++|... ...+..|... |++.++||||++ |++||||.+|+.||++++|.++++|..||.||
T Consensus 4 p~el~~~l~~~l~~l~~~-----~p~a~pF~~pvd~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li 77 (114)
T d3dwya1 4 PEELRQALMPTLEALYRQ-----DPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHTC-----TTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-----CcCCCccCCCCChhhccCCCHHHH-cCCCCCHHHHHHHHHcCccccHHHHHHHHHHH
Confidence 577899999999999643 2356789988 678899999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000101 2013 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2044 (2239)
Q Consensus 2013 ~~Na~~yn~~~sev~~dA~~L~~~f~~~~k~~ 2044 (2239)
|.||+.||+++|.+|.+|..|+++|.++++..
T Consensus 78 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 109 (114)
T d3dwya1 78 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 109 (114)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=6.9e-18 Score=178.85 Aligned_cols=118 Identities=23% Similarity=0.290 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+..|.++|. ..+.++||||++..+++.|..+|...|+.+..++|.++..+|..++++|+.++.. +|++|++
T Consensus 14 ~~K~~~L~~ll~---~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~~ 87 (155)
T d1hv8a2 14 NERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDV 87 (155)
T ss_dssp GGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTT
T ss_pred HHHHHHHHHHHc---cCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce---eeeehhH
Confidence 458888888775 3567999999999999999999999999999999999999999999999976554 7999999
Q ss_pred cccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1406 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+++|||++.+++||+||+|||+..|+||+||++|.|++..+.++
T Consensus 88 ~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~ 131 (155)
T d1hv8a2 88 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 131 (155)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred HhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEE
Confidence 99999999999999999999999999999999999987665443
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=7.2e-18 Score=193.96 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHHHHH--hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCC--------CCHHHHHHHHHHHhcCCCC
Q 000101 1326 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT--------TSLEDRESAIVDFNSHDSD 1395 (2239)
Q Consensus 1326 SGKLelLdrIL~kLk--atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGs--------ts~eeRqeiL~~FNs~ds~ 1395 (2239)
++|+..|.++|.++. ..++|+||||+++.+++.+.+.|...|+++..++|. ++..+|..+++.|+++...
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 459999999998774 457799999999999999999999999999999885 4445799999999975443
Q ss_pred ccEEEEeccccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEEEeh
Q 000101 1396 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1453 (2239)
Q Consensus 1396 ~~VfLLSTrAGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~VyrLva 1453 (2239)
|||+|+++++||||+.|++||+||+||||..++||+||++|.+ ++.+|.|++
T Consensus 222 ---vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~---~~~~~~l~~ 273 (286)
T d1wp9a2 222 ---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM---PGRVIILMA 273 (286)
T ss_dssp ---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEE
T ss_pred ---EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC---CCEEEEEEe
Confidence 6999999999999999999999999999999999999999955 445555544
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.4e-17 Score=172.63 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHHhhccCCCCCHHHHHHHHHHHHHhh
Q 000101 1937 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2016 (2239)
Q Consensus 1937 ~mq~kck~vl~kl~~~~d~~Gr~l~~~F~~lp~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D~qLM~~Na 2016 (2239)
.-|..+..+|+.|-.. .-..++.+..|+.++++.++||||++ |++||||.+|.+||++++|.++++|..||.|||.||
T Consensus 5 ~~~~~~~~il~~l~~~-~~~~~p~a~pF~~pVd~~~~PdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 82 (128)
T d1eqfa2 5 DDQVAFSFILDNIVTQ-KMMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANS 82 (128)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HHHcCCCCChhcCCCCcccCcCHHHH-cCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 4455677777776422 34556778999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000101 2017 MQFYGFSHEVRSEARKVHDLFFDLLKI 2043 (2239)
Q Consensus 2017 ~~yn~~~sev~~dA~~L~~~f~~~~k~ 2043 (2239)
+.||+++|.+|.+|..|.++|.++++.
T Consensus 83 ~~yN~~~s~i~~~A~~L~~~~~~~l~~ 109 (128)
T d1eqfa2 83 VKYNGPESQYTKTAQEIVNVCYQTLTE 109 (128)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.70 E-value=1.8e-17 Score=191.80 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=117.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaPslk 1077 (2239)
.+||+||.+++.+++. +.+|||+.+||+|||+++++++.++... ...++|||||. +|+.||..+|.+|.....
T Consensus 112 ~~~rdyQ~~av~~~l~----~~~~il~~pTGsGKT~i~~~i~~~~~~~--~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cccchHHHHHHHHHHh----cCCceeEEEcccCccHHHHHHHHHhhhc--ccceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 5899999999999987 5678999999999999998888776653 23589999995 599999999999874432
Q ss_pred --eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhcc-ccceEEE
Q 000101 1078 --CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1154 (2239)
Q Consensus 1078 --vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~L-ka~rRLL 1154 (2239)
+....+...... .......|+|+|++.+.+....+. ..|++||+||||+++. ......+..+ ++.+||+
T Consensus 186 ~~~~~~~~g~~~~~-----~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~~a--~~~~~il~~~~~~~~rlG 257 (282)
T d1rifa_ 186 AMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATG--KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCH--HHHHHHTTTCTTCCEEEE
T ss_pred ccceeecceecccc-----cccccceEEEEeeehhhhhccccc-CCCCEEEEECCCCCCc--hhHHHHHHhccCCCeEEE
Confidence 222222211100 112356799999999876543332 3699999999999974 2345566666 6889999
Q ss_pred ecCCCCCCCHHHHHHHHhhhcC
Q 000101 1155 LTGTPLQNDLKELWSLLNLLLP 1176 (2239)
Q Consensus 1155 LTGTPIQNnL~ELwsLLnFLlP 1176 (2239)
|||||-..... .|.|..++.|
T Consensus 258 lTaT~~~~~~~-~~~l~g~~Gp 278 (282)
T d1rifa_ 258 LSGSLRDGKAN-IMQYVGMFGE 278 (282)
T ss_dssp ECSSCCTTSTT-HHHHHHHHCE
T ss_pred EEeecCCCCcc-eEEEeeecCC
Confidence 99999655543 4556655543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.3e-17 Score=176.52 Aligned_cols=118 Identities=24% Similarity=0.301 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1406 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAG 1406 (2239)
.|+..|..+|... .+.++||||+....++.+..+|...|+.+..+||+++.++|..+++.|+.+... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~~ 94 (168)
T d2j0sa2 20 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDVW 94 (168)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGGG
T ss_pred HHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc---EEeccchh
Confidence 4999999998775 467999999999999999999999999999999999999999999999986666 79999999
Q ss_pred ccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1407 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1407 GeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
++|||++.+++||+||+|||+..|+||+||++|.|++..|..+
T Consensus 95 ~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~ 137 (168)
T d2j0sa2 95 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 137 (168)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred cccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEE
Confidence 9999999999999999999999999999999999987665443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=1.5e-16 Score=172.29 Aligned_cols=167 Identities=22% Similarity=0.248 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~-SLLsQW~~Ef~KwaP--sl 1076 (2239)
++|+||.++++++. +.|+|++.+||+|||++++.++...... ..+++|||||. .|+.||.++|.+++. ..
T Consensus 9 ~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~--~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~ 81 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (200)
T ss_dssp CCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHh--cCCcEEEEcCchHHHHHHHHHHHHhhccccc
Confidence 68999999999875 3478999999999999888777666543 34689999996 588999999999975 45
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccChhhHHHH--Hh-hccccce
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLAR--DL-DRYRCQR 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~~SKlsk--aL-k~Lka~r 1151 (2239)
.+..+.+......+. .....++++++|++.+.... ..+...+|++||+||||++.+....... .+ ......+
T Consensus 82 ~v~~~~~~~~~~~~~---~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 158 (200)
T d1wp9a1 82 KIVALTGEKSPEERS---KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (200)
T ss_dssp GEEEECSCSCHHHHH---HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred ceeeeecccchhHHH---HhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCc
Confidence 666666654432221 11235689999999998653 3344457899999999999765433222 11 1233446
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhcCc
Q 000101 1152 RLLLTGTPLQNDLKELWSLLNLLLPE 1177 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~ELwsLLnFLlP~ 1177 (2239)
.|+|||||- +...++..+++.+...
T Consensus 159 ~l~~SATp~-~~~~~~~~~~~~l~~~ 183 (200)
T d1wp9a1 159 VIGLTASPG-STPEKIMEVINNLGIE 183 (200)
T ss_dssp EEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred EEEEEecCC-CcHHHHHHHHhcCCce
Confidence 788999993 4455555566555443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=6.7e-16 Score=170.67 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=108.8
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..|..+|... .+.++||||+....++.|..+|...|+.+..+||+++.++|.++++.|..+... +|++|+
T Consensus 14 ~~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaTd 88 (200)
T d1oywa3 14 KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATV 88 (200)
T ss_dssp CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECT
T ss_pred CCcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccce---EEEecc
Confidence 345888888877653 477999999999999999999999999999999999999999999999976555 799999
Q ss_pred ccccccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1405 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1405 AGGeGLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
++|+|||++++++||+||+|||+..|+|++||++|.|+...+.+++
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~ 134 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEec
Confidence 9999999999999999999999999999999999999876665543
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.55 E-value=8.3e-15 Score=159.71 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=96.2
Q ss_pred HHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcC
Q 000101 1336 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1415 (2239)
Q Consensus 1336 L~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaA 1415 (2239)
+.+....++++||||+....++.|..+|...|+++..+||.++.++|.+++++|+++... +|++|+++++|||++.+
T Consensus 24 i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~rGiDip~v 100 (181)
T d1t5la2 24 IRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLREGLDIPEV 100 (181)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCSSSCCCTTE
T ss_pred HHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCC---EEEehhHHHccCCCCCC
Confidence 344445789999999999999999999999999999999999999999999999987666 89999999999999999
Q ss_pred ceEEEcCCC-----CCcchHHHhhhhhcccCCc
Q 000101 1416 DTVIIYDPD-----PNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1416 DtVIifDpp-----WNP~~dlQAiGRAhRIGQk 1443 (2239)
++||+||+| +++..|.||+||++|.|..
T Consensus 101 ~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred CEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 999999999 4788899999999999864
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=2.4e-14 Score=155.12 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=94.5
Q ss_pred HHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCc
Q 000101 1337 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1416 (2239)
Q Consensus 1337 ~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaAD 1416 (2239)
.+....|+++||||....+++.|..+|...|+....+||+++..+|.+++++|..++.+ +|++|+++++|||+++++
T Consensus 25 ~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip~V~ 101 (174)
T d1c4oa2 25 RERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPEVS 101 (174)
T ss_dssp HHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTTEE
T ss_pred HHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeE---EEEeeeeeeeeccCCCCc
Confidence 33346799999999999999999999999999999999999999999999999986655 799999999999999999
Q ss_pred eEEEcCCCC-----CcchHHHhhhhhcccCCc
Q 000101 1417 TVIIYDPDP-----NPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1417 tVIifDppW-----NP~~dlQAiGRAhRIGQk 1443 (2239)
+||+||++- +...|.|++||++|-|..
T Consensus 102 ~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 102 LVAILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp EEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred EEEEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 999999875 446799999999998754
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=8.1e-14 Score=155.58 Aligned_cols=166 Identities=20% Similarity=0.284 Sum_probs=109.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCc
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslk 1077 (2239)
++++++|..++..++. +.+.++...||+|||++++.++.++.. ..+.+|||+|+. |+.||.++|.+|+....
T Consensus 42 ~~p~~~Q~~~i~~~l~----g~~~~i~apTGsGKT~~~~~~~~~~~~---~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 42 GEPRAIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEecCCChHHHHHHHHHHHHHH---hcCeEEEEeccHHHHHHHHHHHHHHHHHcC
Confidence 4789999999988876 788999999999999887766655443 345899999965 89999999999975421
Q ss_pred ------eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc--c--
Q 000101 1078 ------CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR--Y-- 1147 (2239)
Q Consensus 1078 ------vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~--L-- 1147 (2239)
+..+.+......+.........++|+|+|++.+.+....+ .+|++|||||+|.+........+.+.. |
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~~~--~~~~~vVvDE~d~~l~~~~~~~~~~~~~g~~~ 192 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYREL--GHFDFIFVDDVDAILKASKNVDKLLHLLGFHY 192 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTS--CCCSEEEESCHHHHHTSTHHHHHHHHHTTEEE
T ss_pred CceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhhhc--CCCCEEEEEChhhhhhcccchhHHHHhcCChH
Confidence 2233333322222222233456899999999988765444 368899999999985433332222221 1
Q ss_pred ---------c-cceEEEecCCCCCCCHHHHH-HHHhh
Q 000101 1148 ---------R-CQRRLLLTGTPLQNDLKELW-SLLNL 1173 (2239)
Q Consensus 1148 ---------k-a~rRLLLTGTPIQNnL~ELw-sLLnF 1173 (2239)
. ....+++|||+-......|+ .|++|
T Consensus 193 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 193 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhCC
Confidence 1 12357789996444434443 34443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=4.4e-14 Score=154.13 Aligned_cols=147 Identities=19% Similarity=0.113 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC-c
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV-S 1077 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl-k 1077 (2239)
+|+|||.+++..+.. +.++||+.+||+|||.+++..+..... ..+.+|+|||.. |+.+|..+|.+|++.. .
T Consensus 25 ~l~~~Q~~ai~~l~~----~~~~il~apTGsGKT~~a~l~i~~~~~---~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCchhHHHHHHHHHHhh---ccCcceeecccHHHHHHHHHHHHHHhhcccc
Confidence 699999999988775 778999999999999887665554432 345899999976 8899999999998744 4
Q ss_pred eEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh--cccCCceEEEecccccccChh--hHHHHHhh---ccc-c
Q 000101 1078 CIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLD---RYR-C 1149 (2239)
Q Consensus 1078 vvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrIKN~~--SKlskaLk---~Lk-a 1149 (2239)
+..+.|....+. .....+.|+++|+..+...... .....+++||+||+|++.+.. ......+. .+. .
T Consensus 98 v~~~~~~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~ 172 (202)
T d2p6ra3 98 IGISTGDYESRD-----EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (202)
T ss_dssp EEEECSSCBCCS-----SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred ceeeccCccccc-----ccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCC
Confidence 445555443322 2334678999999888755321 122367899999999997643 22222333 232 3
Q ss_pred ceEEEecCC
Q 000101 1150 QRRLLLTGT 1158 (2239)
Q Consensus 1150 ~rRLLLTGT 1158 (2239)
.++|+||||
T Consensus 173 ~~~l~lSAT 181 (202)
T d2p6ra3 173 LRVIGLSAT 181 (202)
T ss_dssp CEEEEEECC
T ss_pred CcEEEEcCC
Confidence 467889999
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.8e-13 Score=147.81 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCce
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkv 1078 (2239)
.|||||.+++.-++. +.++|++..||+|||++++..+.. ..+.+++|+|.. ++.+|..+|..+......
T Consensus 25 ~~rp~Q~~ai~~~l~----g~~vlv~apTGsGKT~~~~~~~~~------~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~ 94 (206)
T d1oywa2 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQANGVAAAC 94 (206)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCCCcchhhhhhhh------ccCceEEeccchhhhhhHHHHHHhhcccccc
Confidence 799999999988765 678999999999999887655432 346789999975 788899999988654443
Q ss_pred EEEecchhhHHHHHHHHhhcCccEEEEehhHHHHh--hhhcccCCceEEEecccccccChhh-------HHHHHhhcccc
Q 000101 1079 IYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRYRC 1149 (2239)
Q Consensus 1079 vvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrIKN~~S-------KlskaLk~Lka 1149 (2239)
......................+|+++|+..+..+ ...+...++.+||+||||.+..... .....+..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (206)
T d1oywa2 95 LNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT 174 (206)
T ss_dssp ECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTT
T ss_pred cccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhCCC
Confidence 33344444455555556667889999999888654 2334455789999999999865322 11222223445
Q ss_pred ceEEEecCCCCCCCHHHHHHHHhhhcCc
Q 000101 1150 QRRLLLTGTPLQNDLKELWSLLNLLLPE 1177 (2239)
Q Consensus 1150 ~rRLLLTGTPIQNnL~ELwsLLnFLlP~ 1177 (2239)
..+++||||+-.....|+...|.+-+|-
T Consensus 175 ~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 175 LPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp SCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred CceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 5689999996332235677777666653
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.33 E-value=3.8e-13 Score=135.27 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=80.9
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEEecchhhHHHHHHH
Q 000101 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2239)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~ 1094 (2239)
+++++.++||..+||+|||++++..+....... ...+||++|...+.+|..+ ++....+-+.......
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--~~~vli~~p~~~l~~q~~~---~~~~~~~~~~~~~~~~------- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKE---AFHGLDVKFHTQAFSA------- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHH---HTTTSCEEEESSCCCC-------
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--CceeeeeecchhHHHHHHH---Hhhhhhhhhccccccc-------
Confidence 466788999999999999998876655444322 3578999998755444333 2233333222222111
Q ss_pred HhhcCccEEEEehhHHHHh-hhhcccCCceEEEecccccccChhhHH---HHHhhccccceEEEecCCC
Q 000101 1095 VAALKFNVLVTTYEFIMYD-RSKLSKVDWKYIIIDEAQRMKDRESVL---ARDLDRYRCQRRLLLTGTP 1159 (2239)
Q Consensus 1095 i~~~kfdVVITTYE~L~kD-~s~L~kikWd~VIIDEAHrIKN~~SKl---skaLk~Lka~rRLLLTGTP 1159 (2239)
.......+.++++..+... .......+|++|||||||++....... ...+......+.|+|||||
T Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 71 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ccccccchhhhhHHHHHHHHhccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 1112345666676666543 334455689999999999984322221 1222234566789999998
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.30 E-value=3e-12 Score=130.92 Aligned_cols=125 Identities=19% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecchhhHHHHHHHHh
Q 000101 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQVA 1096 (2239)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gskd~Rk~l~~~i~ 1096 (2239)
....+||...||+|||++++.++. .....+||+||.. ++.||...|.+++.......+.|...
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~---------- 70 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI---------- 70 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE----------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH------HcCCcEEEEcChHHHHHHHHHHHHHHhhcccccccccccc----------
Confidence 345689999999999987654432 2345799999976 77899999999987665555544432
Q ss_pred hcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhh-HHHHHhhcc---ccceEEEecCCC
Q 000101 1097 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES-VLARDLDRY---RCQRRLLLTGTP 1159 (2239)
Q Consensus 1097 ~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~S-KlskaLk~L---ka~rRLLLTGTP 1159 (2239)
.....++++|+..+....... ..+|++|||||+|++..... .+...+..+ .....|+|||||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 TTGSPITYSTYGKFLADGGCS-GGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp CCCCSEEEEEHHHHHHTTGGG-GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ccccceEEEeeeeeccccchh-hhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 224568888888876654322 23789999999999854332 233334333 233578899999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=5.1e-12 Score=144.74 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=118.7
Q ss_pred CCChHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000101 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs 1075 (2239)
.+|-+-|..+++-+..-+..+ .+.+|..+||+|||++++..+...+.. ...++|+||+. |..|+...|.+|++.
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---g~q~~~m~Pt~~La~Qh~~~~~~~f~~ 158 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSK 158 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---ccceeEEeehHhhhHHHHHHHHHhhhh
Confidence 378899999999888766433 467999999999999999888777753 24789999977 678999999999984
Q ss_pred --CceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhh-ccccc
Q 000101 1076 --VSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQ 1150 (2239)
Q Consensus 1076 --lkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk-~Lka~ 1150 (2239)
+.+.+++|. ..+|...+..+..+..+|+|.|+..+..+..+ .+..+|||||-|++.-.. ...+. .-+..
T Consensus 159 ~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f---~~LglviiDEqH~fgv~Q---r~~l~~~~~~~ 232 (264)
T d1gm5a3 159 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHF---KNLGLVIIDEQHRFGVKQ---REALMNKGKMV 232 (264)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCC---SCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred ccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCc---cccceeeeccccccchhh---HHHHHHhCcCC
Confidence 567777775 45677778888889999999999988755432 256899999999983211 11111 11335
Q ss_pred eEEEecCCCCCCCH
Q 000101 1151 RRLLLTGTPLQNDL 1164 (2239)
Q Consensus 1151 rRLLLTGTPIQNnL 1164 (2239)
+.|++||||+..++
T Consensus 233 ~~l~~SATPiprtl 246 (264)
T d1gm5a3 233 DTLVMSATPIPRSM 246 (264)
T ss_dssp CEEEEESSCCCHHH
T ss_pred CEEEEECCCCHHHH
Confidence 68999999998875
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.3e-11 Score=132.84 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=114.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP---s 1075 (2239)
.+.|.|..++..++. +.+.|+...||+|||+.++..+.............||+||+. ++.|....+..+.. .
T Consensus 23 ~pt~iQ~~aip~il~----g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 23 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc----CCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCC
Confidence 688999999999886 788999999999999999888766554334445689999987 67777777777764 4
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh---hhHHHHHhhccccc
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYRCQ 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~---~SKlskaLk~Lka~ 1150 (2239)
+.+.++.|........ ..+.....+|+|+|++.+..... .+.-.+..++||||||+|... ...+...+..++..
T Consensus 99 ~~~~~~~g~~~~~~~~-~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~ 177 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 177 (207)
T ss_dssp CCEEEESCCSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS
T ss_pred ceeEEEeccccHHHHH-HHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCCC
Confidence 5566666665544332 22445678999999999987643 333446789999999998642 22344455555444
Q ss_pred e-EEEecCCCCCCCHHHH
Q 000101 1151 R-RLLLTGTPLQNDLKEL 1167 (2239)
Q Consensus 1151 r-RLLLTGTPIQNnL~EL 1167 (2239)
+ .+++||| +...+.++
T Consensus 178 ~Q~il~SAT-~~~~v~~l 194 (207)
T d1t6na_ 178 KQVMMFSAT-LSKEIRPV 194 (207)
T ss_dssp SEEEEEESC-CCTTTHHH
T ss_pred CEEEEEeee-CCHHHHHH
Confidence 4 6777999 44555544
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.1e-11 Score=132.93 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=112.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa---Ps 1075 (2239)
.+.|.|..++..++. +.+.|++..+|+|||+.++..+...+........+||+||+. +..|-..++..+. ..
T Consensus 25 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHc----CCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccC
Confidence 688999999998886 888999999999999999888877655455566789999987 5666666666664 44
Q ss_pred CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccC--hhhHHHHHhhccccc-
Q 000101 1076 VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ- 1150 (2239)
Q Consensus 1076 lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~- 1150 (2239)
+.+..+.|........ .......+|||+|++.+..... .+...+..++||||||+|.+ ....+...+..++..
T Consensus 101 ~~~~~~~g~~~~~~~~--~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~ 178 (206)
T d1veca_ 101 AKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 178 (206)
T ss_dssp CCEEEECSSSCHHHHH--HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTC
T ss_pred cccccccCCccHHHHH--HHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCCCC
Confidence 5566666655433222 2334678999999999976532 34445678999999999965 344566666676544
Q ss_pred eEEEecCC
Q 000101 1151 RRLLLTGT 1158 (2239)
Q Consensus 1151 rRLLLTGT 1158 (2239)
..+++|||
T Consensus 179 Q~~l~SAT 186 (206)
T d1veca_ 179 QILLYSAT 186 (206)
T ss_dssp EEEEEESC
T ss_pred EEEEEEec
Confidence 47778999
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.7e-11 Score=135.36 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
.+.|.|..++.+++. +.+.|+...+|+|||+.++..+...+.........||+||+. +..|-..++.++.. .+
T Consensus 39 ~pt~IQ~~aIp~il~----g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i 114 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 114 (222)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHC----CCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccce
Confidence 688999999999886 788999999999999999888876654444445689999988 66777777888763 56
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~-r 1151 (2239)
++..+.|......... ....+.+|+|+|++++.... ..+.-....++||||||+|.+ ....+...+..++.. .
T Consensus 115 ~~~~~~g~~~~~~~~~--~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q 192 (222)
T d2j0sa1 115 QCHACIGGTNVGEDIR--KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 192 (222)
T ss_dssp CEEEECTTSCHHHHHH--HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCE
T ss_pred eEEEEeecccchhhHH--HhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCE
Confidence 6777777655443322 22346799999999997653 233334678999999999976 445566677777554 4
Q ss_pred EEEecCC
Q 000101 1152 RLLLTGT 1158 (2239)
Q Consensus 1152 RLLLTGT 1158 (2239)
.+++|||
T Consensus 193 ~ilfSAT 199 (222)
T d2j0sa1 193 VVLISAT 199 (222)
T ss_dssp EEEEESC
T ss_pred EEEEEEe
Confidence 6778999
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.21 E-value=5.7e-11 Score=130.75 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=109.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaP--sl 1076 (2239)
++.|.|..++..++. .+.+.|+...+|+|||+.++..+..... ......+||+||+. ++.++...+.++.. ..
T Consensus 26 ~pt~iQ~~~ip~~l~---g~~d~iv~a~TGsGKT~~~~l~~~~~~~-~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~ 101 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 101 (208)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHc---CCCCeeeechhcccccceeecccccccc-cccCcceEEEeeccccchhhhhhhhhhcccCCe
Confidence 578999999988775 1236677899999999998877766543 23334689999977 77888888888764 46
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~-r 1151 (2239)
.+..+.|......+.. .. .+.+|+|+|++.+.+.. ..+.-.+..++||||||++.+ ....+.+.+..++.. .
T Consensus 102 ~v~~~~g~~~~~~~~~-~l--~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q 178 (208)
T d1hv8a1 102 KIAKIYGGKAIYPQIK-AL--KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 178 (208)
T ss_dssp CEEEECTTSCHHHHHH-HH--HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCE
T ss_pred EEEEeeCCCChHHHHH-hc--CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCe
Confidence 6777777765544332 22 36799999999987543 233445678999999999854 344566666666544 4
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
.+++|||-
T Consensus 179 ~i~~SAT~ 186 (208)
T d1hv8a1 179 ILLFSATM 186 (208)
T ss_dssp EEEECSSC
T ss_pred EEEEEccC
Confidence 67789993
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.4e-10 Score=130.57 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=118.4
Q ss_pred CChHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPsl 1076 (2239)
+|.+-|..+++-+........ +-+|+-++|+|||..++..+...+. ....++|+||+. |..|+...|.++++.+
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~---~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~ 131 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFANW 131 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTTT
T ss_pred ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH---cCCceEEEccHHHhHHHHHHHHHHHHhhC
Confidence 678899999998887766544 5699999999999999888876663 445789999977 6788999999998864
Q ss_pred --ceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhc-cccce
Q 000101 1077 --SCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQR 1151 (2239)
Q Consensus 1077 --kvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~-Lka~r 1151 (2239)
.+.++++. ...+...+..+..+..+|||.|...+.... .-.++.+|||||-|++. .+.-..+.. ....+
T Consensus 132 ~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~---~f~~LgLiIiDEeH~fg---~kQ~~~l~~~~~~~~ 205 (233)
T d2eyqa3 132 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRFG---VRHKERIKAMRANVD 205 (233)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGSC---HHHHHHHHHHHTTSE
T ss_pred CCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCC---ccccccceeeechhhhh---hHHHHHHHhhCCCCC
Confidence 55667774 346667777888899999999998886432 23468899999999973 222223332 23447
Q ss_pred EEEecCCCCCCCH
Q 000101 1152 RLLLTGTPLQNDL 1164 (2239)
Q Consensus 1152 RLLLTGTPIQNnL 1164 (2239)
.|++||||+..++
T Consensus 206 ~l~~SATPiprtl 218 (233)
T d2eyqa3 206 ILTLTATPIPRTL 218 (233)
T ss_dssp EEEEESSCCCHHH
T ss_pred EEEEecchhHHHH
Confidence 8999999987653
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.16 E-value=1.3e-10 Score=130.60 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=116.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---------CCCCCeEEEechH-HHHHHHHH
Q 000101 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---------GNYGPHLIIVPNA-VLVNWKSE 1068 (2239)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k---------~~~GP~LIVVP~S-LLsQW~~E 1068 (2239)
..+.|.|..++..++. +.+.++...+|+|||+.++..+...+... .....+||+||+. ++.|+..+
T Consensus 42 ~~pt~iQ~~~ip~il~----g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~ 117 (238)
T d1wrba1 42 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 117 (238)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhhhhhC----CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchhee
Confidence 3789999999998886 88999999999999999988877655321 1223589999987 78889999
Q ss_pred HHHHCCC--CceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHH
Q 000101 1069 LHKWLPS--VSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLAR 1142 (2239)
Q Consensus 1069 f~KwaPs--lkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlsk 1142 (2239)
+..+... +++..+.|......+.. ......+|||+|++.+.... ..+.-.++.++||||||++.. ....+..
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~ 195 (238)
T d1wrba1 118 SQKFSLNTPLRSCVVYGGADTHSQIR--EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 195 (238)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHH--HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred eeecccCCCcEEEEEeccchhhHHHh--hcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHHH
Confidence 8888654 56666666654433322 33457899999999998653 234445788999999999853 3455666
Q ss_pred Hhhccc-----cceEEEecCCCCCCCHHHH
Q 000101 1143 DLDRYR-----CQRRLLLTGTPLQNDLKEL 1167 (2239)
Q Consensus 1143 aLk~Lk-----a~rRLLLTGTPIQNnL~EL 1167 (2239)
.+..++ ....+++||| +..++.+|
T Consensus 196 Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l 224 (238)
T d1wrba1 196 IIEESNMPSGINRQTLMFSAT-FPKEIQKL 224 (238)
T ss_dssp HHHSSCCCCGGGCEEEEEESS-CCHHHHHH
T ss_pred HHHHhcCCCCCCCEEEEEeee-CCHHHHHH
Confidence 666542 2246889999 44444443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.13 E-value=1.8e-11 Score=127.76 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=79.9
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEEc
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1421 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIif 1421 (2239)
.+.++||||+....++.|.+.|...|+.+..+||+++.++ |+.+. .-||++|+++++||| .+++.||+|
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~~---~~vlvaTd~~~~GiD-~~v~~Vi~~ 102 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTNG---DVVVVATDALMTGFT-GDFDSVIDC 102 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTSS---CEEEEESSSSCSSSC-CCBSEEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhhh---cceeehhHHHHhccc-cccceEEEE
Confidence 4679999999999999999999999999999999998543 55433 348999999999999 899999885
Q ss_pred C----CCCCcchHHHhhhhhcccCCcc
Q 000101 1422 D----PDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1422 D----ppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
| +|+++..|+||+||++| |++.
T Consensus 103 ~~~~~~P~~~~~y~qr~GR~gR-g~~G 128 (138)
T d1jr6a_ 103 NTSDGKPQDAVSRTQRRGRTGR-GKPG 128 (138)
T ss_dssp SEETTEECCHHHHHHHHTTBCS-SSCE
T ss_pred EecCCCCCCHHHHHhHhccccC-CCCc
Confidence 5 68999999999999999 8666
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.12 E-value=1.9e-12 Score=146.13 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec---
Q 000101 1327 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI--- 1403 (2239)
Q Consensus 1327 GKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLST--- 1403 (2239)
-|+..|..+|.. -|.++||||++..+++.|.++|... +||+++.++|.+++++|..++.+ +||+|
T Consensus 12 ~~~~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a~ 79 (248)
T d1gkub2 12 ESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAHY 79 (248)
T ss_dssp CCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC-
T ss_pred hHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCe---EEEEeccc
Confidence 366777777764 3678999999999999999999753 89999999999999999986555 67777
Q ss_pred -cccccccCCCc-CceEEEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1404 -RAAGRGLNLQS-ADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1404 -rAGGeGLNLqa-ADtVIifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
+++++|||++. +++||+||+||+ .|++||++|.|+..
T Consensus 80 ~~v~~rGlDip~~v~~VI~~d~P~~----~~r~gR~~R~g~~~ 118 (248)
T d1gkub2 80 YGTLVRGLDLPERIRFAVFVGCPSF----RVTIEDIDSLSPQM 118 (248)
T ss_dssp -----CCSCCTTTCCEEEEESCCEE----EEECSCGGGSCHHH
T ss_pred cchhhhccCccccccEEEEeCCCcc----hhhhhhhhccCcce
Confidence 77999999995 999999999984 47899999999763
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.9e-10 Score=127.84 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=110.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
.+.|.|..++..++. +.+.|++..+|+|||+.++..+...+........+||+||+. ++.|-..++.++... +
T Consensus 34 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 688999999999886 788999999999999999888777665444555689999987 777888888888653 3
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~-r 1151 (2239)
.+....+........ ........+|+|+|++.+.... ..+......++||||||++.+ ....+...+..++.. .
T Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q 188 (218)
T d2g9na1 110 SCHACIGGTNVRAEV-QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 188 (218)
T ss_dssp CEEEECC--CCCSTT-TSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred eEEeeecccchhHHH-HHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCCe
Confidence 444444432221111 1122346799999999987663 334445678999999999964 345566666677654 4
Q ss_pred EEEecCCC
Q 000101 1152 RLLLTGTP 1159 (2239)
Q Consensus 1152 RLLLTGTP 1159 (2239)
++++|||=
T Consensus 189 ~il~SAT~ 196 (218)
T d2g9na1 189 VVLLSATM 196 (218)
T ss_dssp EEEEESCC
T ss_pred EEEEEecC
Confidence 67779993
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=1.2e-09 Score=119.71 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~Kwa--Psl 1076 (2239)
.+.|.|..++..++. +.+.|+..++|+|||+.++..+...+.........++++|.. ++.+-...+..+. .++
T Consensus 23 ~pt~iQ~~aip~il~----g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 23 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCe
Confidence 688999999998887 778999999999999988777666554445556678888876 4444333344333 467
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhh--hcccCCceEEEecccccccCh--hhHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lka~-r 1151 (2239)
++....|........ .......+|+|+|++.+..... .+.-.+..++||||||+|.+. ...+...+..++.. .
T Consensus 99 ~~~~~~g~~~~~~~~--~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q 176 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDI--LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 176 (206)
T ss_dssp CEEEECSSSCHHHHH--HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred eEEeecCccchhhHH--HHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCCCE
Confidence 777777765543332 2334678999999999987643 333446789999999999763 45566666667544 4
Q ss_pred EEEecCC
Q 000101 1152 RLLLTGT 1158 (2239)
Q Consensus 1152 RLLLTGT 1158 (2239)
.+++|||
T Consensus 177 ~il~SAT 183 (206)
T d1s2ma1 177 SLLFSAT 183 (206)
T ss_dssp EEEEESC
T ss_pred EEEEEEe
Confidence 7788999
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=1.2e-09 Score=120.86 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPs--l 1076 (2239)
.+.|.|..++..++. +.+.|+...+|+|||+.++..+...+........+||+||+. ++.|-...+..+... +
T Consensus 32 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 107 (212)
T d1qdea_ 32 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 107 (212)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccccccccc
Confidence 789999999998886 788999999999999998887766655445555789999987 666666666666543 3
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccC--hhhHHHHHhhccccc-e
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-R 1151 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN--~~SKlskaLk~Lka~-r 1151 (2239)
.+....+......+. ....+.+|+|+|++.+.... ..+.-.+..++||||||++.+ ....+...+..++.. .
T Consensus 108 ~~~~~~~~~~~~~~~---~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q 184 (212)
T d1qdea_ 108 KVHACIGGTSFVEDA---EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 184 (212)
T ss_dssp CEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred ceeeEeeccchhHHH---HHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCCCe
Confidence 444444443322221 12236799999999998653 234444688999999999965 455666666777544 4
Q ss_pred EEEecCCCCCCCHHH
Q 000101 1152 RLLLTGTPLQNDLKE 1166 (2239)
Q Consensus 1152 RLLLTGTPIQNnL~E 1166 (2239)
.+++|||= .+.+.+
T Consensus 185 ~vl~SAT~-~~~v~~ 198 (212)
T d1qdea_ 185 VVLLSATM-PNDVLE 198 (212)
T ss_dssp EEEEESSC-CHHHHH
T ss_pred EEEEEeeC-CHHHHH
Confidence 67789993 333343
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.98 E-value=1.6e-09 Score=118.11 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHCC-
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWLP- 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLL----sQW~~Ef~KwaP- 1074 (2239)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+.............++++|...+ .++.....++..
T Consensus 23 ~pt~iQ~~aip~~l~----G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1q0ua_ 23 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 98 (209)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHHC----CCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhccccc
Confidence 689999999999887 88899999999999998877776655444455567888875533 334554544443
Q ss_pred --CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhh--hhcccCCceEEEecccccccCh--hhHHHHHhhccc
Q 000101 1075 --SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR 1148 (2239)
Q Consensus 1075 --slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrIKN~--~SKlskaLk~Lk 1148 (2239)
...+....+..+..... .....+.+|+|+|++.+.... ..+...+..++||||||++.+. ...+...+..++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~~ 176 (209)
T d1q0ua_ 99 DRMIVARCLIGGTDKQKAL--EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 176 (209)
T ss_dssp GGCCCEEEECCCSHHHHTT--CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccccccccchhhHHHH--HHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHHCC
Confidence 23333444443322111 122346899999999997653 2233456789999999999654 345566666665
Q ss_pred cc-eEEEecCCCCCCCHHHH
Q 000101 1149 CQ-RRLLLTGTPLQNDLKEL 1167 (2239)
Q Consensus 1149 a~-rRLLLTGTPIQNnL~EL 1167 (2239)
.. ..+++||| +.+.+.++
T Consensus 177 ~~~Q~il~SAT-l~~~v~~l 195 (209)
T d1q0ua_ 177 KDLQMLVFSAT-IPEKLKPF 195 (209)
T ss_dssp TTCEEEEEESC-CCGGGHHH
T ss_pred CCCEEEEEEcc-CCHHHHHH
Confidence 44 46778999 44454444
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.96 E-value=6.6e-10 Score=122.15 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH--------------------------------cCCeEEeecCCCCHH
Q 000101 1333 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--------------------------------RQLVYRRIDGTTSLE 1380 (2239)
Q Consensus 1333 drIL~kLkatGhKVLIFSQ~t~~LDILed~L~~--------------------------------rGiky~RLDGsts~e 1380 (2239)
..++.++...++.+||||..+..++.++..|.. +| +..+||+++.+
T Consensus 30 ~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~G--Ia~hh~~l~~~ 107 (201)
T d2p6ra4 30 EELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG--AAFHHAGLLNG 107 (201)
T ss_dssp HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT--CCEECTTSCHH
T ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhcc--HHHHHHHhhhh
Confidence 345566666789999999998766655555432 23 34579999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE-------cCCCCCcchHHHhhhhhcccCCcceEEEEEE
Q 000101 1381 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1451 (2239)
Q Consensus 1381 eRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi-------fDppWNP~~dlQAiGRAhRIGQkKeV~VyrL 1451 (2239)
+|..+.+.|+++... +|++|.+++.|||++..++||. ++.++++..+.|++|||+|.|....-.+|.+
T Consensus 108 ~r~~ie~~f~~g~i~---vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~ 182 (201)
T d2p6ra4 108 QRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 182 (201)
T ss_dssp HHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred hHHHHHHHHhCCCce---EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEE
Confidence 999999999975544 7999999999999997777775 5667899999999999999998655555544
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=3.7e-10 Score=124.98 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccHHHHHHH--------HHHHHH---cCCeEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDIL--------EEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1396 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ~t~~LDIL--------ed~L~~---rGiky~RLDGsts~eeRqeiL~~FNs~ds~~ 1396 (2239)
|+..+...+.+-...|+.|.|.|......+.+ .+.|.. .++++..+||.|+.++|++++.+|.+++.+
T Consensus 14 ~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~- 92 (206)
T d1gm5a4 14 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD- 92 (206)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE-
Confidence 55555555666666888888888765433321 222222 266788899999999999999999987666
Q ss_pred cEEEEeccccccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEE
Q 000101 1397 FIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1397 ~VfLLSTrAGGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
||+||.+.++|||+++|++||++|++ |....+.|..||++|-|.+..|..+
T Consensus 93 --iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~ 144 (206)
T d1gm5a4 93 --ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 144 (206)
T ss_dssp --BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred --EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEee
Confidence 79999999999999999999999998 6899999999999999988776443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.79 E-value=7.8e-10 Score=127.30 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=83.2
Q ss_pred cCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHH----------HHHHHHHhcCCCCccEEEEecccccc---
Q 000101 1342 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR----------ESAIVDFNSHDSDCFIFLLSIRAAGR--- 1408 (2239)
Q Consensus 1342 tGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeR----------qeiL~~FNs~ds~~~VfLLSTrAGGe--- 1408 (2239)
.+.|+||||+.+..++.|...|...|++...+||+++.+.| ..++..|..++.+ +|+.|++..+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~d---vVVaT~~~a~g~~ 111 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD---SVIDCNTCVTQTV 111 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBS---EEEECCEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCc---EEEEEeehhccCC
Confidence 47899999999999999999999999999999999998876 4577888764444 5677777666
Q ss_pred ccCCCcCceEEEcCCCCCcchHHHhhhhhcccCCcc
Q 000101 1409 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1444 (2239)
Q Consensus 1409 GLNLqaADtVIifDppWNP~~dlQAiGRAhRIGQkK 1444 (2239)
|+|+..+.+||+||.|.|...|+||+||++| |...
T Consensus 112 giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G 146 (299)
T d1a1va2 112 DFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG 146 (299)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE
T ss_pred CCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc
Confidence 7788888999999999999999999999999 7444
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=4.2e-08 Score=108.43 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1328 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1328 KLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~r--Giky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
+..+...|..+ ...|+.|.+.|..+..++.+.+.|... ++++..+||.|+.+++++++.+|.+++.+ +|+||.+
T Consensus 17 ~~~i~~~I~~E-l~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~Ttv 92 (211)
T d2eyqa5 17 SMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTI 92 (211)
T ss_dssp HHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESST
T ss_pred HHHHHHHHHHH-HHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcc---eEEEehh
Confidence 44444455555 457999999999888888888877654 78899999999999999999999987666 8999999
Q ss_pred cccccCCCcCceEEEcCCC-CCcchHHHhhhhhcccCCcceEEEEE
Q 000101 1406 AGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1450 (2239)
Q Consensus 1406 GGeGLNLqaADtVIifDpp-WNP~~dlQAiGRAhRIGQkKeV~Vyr 1450 (2239)
...|||+++|+++|+++.+ |-..+..|--||++|-+...-|..++
T Consensus 93 IEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 93 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred hhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEe
Confidence 9999999999999999998 79999999999999987665554443
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.15 E-value=2.8e-06 Score=98.36 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=73.3
Q ss_pred hcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccccCCCcCceEEE
Q 000101 1341 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1420 (2239)
Q Consensus 1341 atGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrAGGeGLNLqaADtVIi 1420 (2239)
+.+.++||||.....++.+...|...|++++.|||.+..+++.+ |.+++.+ |||+|++++.|||+ .+++||-
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~~~---~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPD---FILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCS---EEEESSSTTCCTTC-CCSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCCcC---EEEEechhhhceec-CceEEEe
Confidence 35779999999999999999999999999999999999877654 5544444 89999999999999 6998884
Q ss_pred ---------cCCC----------CCcchHHHhhhhhcccCCc
Q 000101 1421 ---------YDPD----------PNPKNEEQAVARAHRIGQK 1443 (2239)
Q Consensus 1421 ---------fDpp----------WNP~~dlQAiGRAhRIGQk 1443 (2239)
||+. .+.+...||.||++|.+.+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 4432 4556668999999998644
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.9e-07 Score=92.29 Aligned_cols=64 Identities=16% Similarity=0.027 Sum_probs=58.2
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|++..+|+||.+|++||||.. |.++|+.|+|.++.++..|+.+ ++|+++ ..+..|
T Consensus 18 ~~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~l 91 (102)
T d3d7ca1 18 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-----RCASAL 91 (102)
T ss_dssp GGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHH
T ss_pred CCCCccCCCCChhhCcCHHHHcCCccCHHH-HHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 457789 88899999999999999999999 9999999999999999999999 999988 776665
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 92 ~ 92 (102)
T d3d7ca1 92 E 92 (102)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.97 E-value=2e-05 Score=84.44 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=97.4
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000101 1326 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1405 (2239)
Q Consensus 1326 SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTrA 1405 (2239)
..|+..+..-+.++...|..|||||..+...+.|..+|...|+++..|+.... ++-.+++. . .+....+.|+|..
T Consensus 17 ~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~-~~Ea~II~-~---Ag~~g~VtIATNm 91 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH-EREAQIIE-E---AGQKGAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH-HHHHHHHT-T---TTSTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH-HHHHHHHH-h---ccCCCceeehhhH
Confidence 35888888888888999999999999999999999999999999999997654 33333443 2 2333458999999
Q ss_pred cccccCCCc--------CceEEEcCCCCCcchHHHhhhhhcccCCcceEEEE
Q 000101 1406 AGRGLNLQS--------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1449 (2239)
Q Consensus 1406 GGeGLNLqa--------ADtVIifDppWNP~~dlQAiGRAhRIGQkKeV~Vy 1449 (2239)
+|+|.|+.- -=+||.-..+-|...+.|..||++|.|......+|
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~ 143 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEE
Confidence 999998753 23889999999999999999999999988766544
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.1e-07 Score=93.02 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=59.1
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1729 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1729 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
...+.+| .+|+...||+||.+|++||||.. |.++|+.|+|.++.++..|+.+ ++|+++ +.+..
T Consensus 28 ~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~~s~~~-----~~A~~ 101 (118)
T d1wuma1 28 HQSAWPFMEPVKRTEAPGYYEVIRFPMDLKT-MSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYY-----KCANI 101 (118)
T ss_dssp SSSCHHHHSCCCSSSSSSCTTTCSSCCCHHH-HHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCTTSSHH-----HHHHH
T ss_pred CCCcCcccCCCChhhCcCHHHHcCChhhHHH-HHHHhcccccCchHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3457889 99999999999999999999999 9999999999999999999998 999998 77766
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 102 l~ 103 (118)
T d1wuma1 102 LE 103 (118)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=5.8e-07 Score=92.26 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=65.2
Q ss_pred cchhhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000101 1711 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1781 (2239)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1781 (2239)
.+++++... -...+.+.+| .+|++..||+||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 13 il~~l~~~~------~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 85 (128)
T d1eqfa2 13 ILDNIVTQK------MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILANSVKY 85 (128)
T ss_dssp HHHHHHHHT------TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHcCCCCChhcCCCCcccCcCHHHHcCCcccHHH-HHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 445555443 3556668899 89999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000101 1782 --SGSWTHDRDEGEDEQVLQ 1799 (2239)
Q Consensus 1782 --~~Sw~~~~~~~~d~~~~~ 1799 (2239)
++|.++ +.+..|.
T Consensus 86 N~~~s~i~-----~~A~~L~ 100 (128)
T d1eqfa2 86 NGPESQYT-----KTAQEIV 100 (128)
T ss_dssp HCTTCHHH-----HHHHHHH
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 888888 7766555
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=5e-07 Score=90.49 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=58.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|+++ +.+..|
T Consensus 19 ~~a~pF~~pvd~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~i~-----~~A~~l 92 (111)
T d1e6ia_ 19 AAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANRL 92 (111)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHH
T ss_pred CCChhhcCCCCchhCcCHHHHcCCchhHHH-HHHHHHccccchHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 347889 88999999999999999999999 9999999999999999999999 899998 777766
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 93 ~ 93 (111)
T d1e6ia_ 93 E 93 (111)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=1.9e-06 Score=89.48 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=57.4
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000101 1730 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1798 (2239)
Q Consensus 1730 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1798 (2239)
..+.+| .+|+...+||||.+|++||||.. |.++|+.|+|.++.++..|+.+ ++|.++ +.+..|
T Consensus 42 ~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~L 115 (139)
T d1eqfa1 42 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 115 (139)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTSHHH-----HHHHHH
T ss_pred CCchhhhCCCChhhccCHHHHcCChhhHHH-HHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346889 88999999999999999999999 9999999999999999999999 888888 666555
Q ss_pred c
Q 000101 1799 Q 1799 (2239)
Q Consensus 1799 ~ 1799 (2239)
+
T Consensus 116 ~ 116 (139)
T d1eqfa1 116 L 116 (139)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=4e-06 Score=84.18 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=54.0
Q ss_pred ccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000101 1731 LTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1797 (2239)
Q Consensus 1731 l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1797 (2239)
.+.+| ..++ ...+||||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|+++ ..+..
T Consensus 24 ~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~-----~~A~~ 97 (114)
T d3dwya1 24 ESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY-----KFCSK 97 (114)
T ss_dssp TTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCccCCCCChhhccCCCHHHHcCCCCCHHH-HHHHHHcCccccHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 45678 5554 4479999999999999999 9999999999999999999999 889988 66655
Q ss_pred cc
Q 000101 1798 LQ 1799 (2239)
Q Consensus 1798 ~~ 1799 (2239)
|+
T Consensus 98 L~ 99 (114)
T d3dwya1 98 LA 99 (114)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.00 E-value=0.0042 Score=70.07 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000101 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2239)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLs----QW~~Ef~Kwa 1073 (2239)
+...++-|+.|.--|.. |.|.=..||=|||+++. +.+++....+ +++-||+.+..|. .|...|-+|+
T Consensus 78 G~RhyDVQLiGgi~L~~------G~iaem~TGEGKTL~a~-l~a~l~al~g--~~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 78 GMFPFKVQLMGGVALHD------GNIAEMKTGEGKTLTST-LPVYLNALTG--KGVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp SCCCCHHHHHHHHHHHT------TSEEECCTTSCHHHHHH-HHHHHHHTTS--SCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEehhHHHHHHHHHh------hhheeecCCCcchhHHH-HHHHHHHhcC--CCceEEecCccccchhhhHHhHHHHHc
Confidence 33566668888765543 45888999999998874 4444443222 3556666665443 4999999988
Q ss_pred CCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHh---------hhhcccCCceEEEecccccccCh------
Q 000101 1074 PSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDR------ 1136 (2239)
Q Consensus 1074 Pslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrIKN~------ 1136 (2239)
. +.+-+.... ...|+.. ...+|+-+|-.-+.-| ...+....+.+.||||++.+.=.
T Consensus 149 G-lsvg~~~~~~~~~~r~~~------Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpl 221 (273)
T d1tf5a3 149 G-LTVGLNLNSMSKDEKREA------YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 221 (273)
T ss_dssp T-CCEEECCTTSCHHHHHHH------HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred C-CCccccccccCHHHHHHH------hhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCce
Confidence 4 444333222 3333332 2568888887665433 22334457899999999987211
Q ss_pred ---------hhHHHHHhhccccceEEEecCCCCCCCHHHHHHHHh
Q 000101 1137 ---------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1172 (2239)
Q Consensus 1137 ---------~SKlskaLk~Lka~rRLLLTGTPIQNnL~ELwsLLn 1172 (2239)
.+-.++.+.++. .+.-+||||- .....|+|.+.+
T Consensus 222 iisg~~~~~a~it~q~~f~~y-~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 222 IISGQSMTLATITFQNYFRMY-EKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEEHHHHHTTS-SEEEEEESCC-GGGHHHHHHHHC
T ss_pred EeccCccchhhhhHHHHHHHH-HHHhCCcccc-HHHHHHHHhccC
Confidence 111122222222 4667899995 455677777665
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.014 Score=63.64 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000101 1325 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1404 (2239)
Q Consensus 1325 ~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~VfLLSTr 1404 (2239)
...|+..+..-+..+...|..|||.+..+..-++|..+|...|+++..|+-.-. +.-..+|.+= +..-.|-|+|.
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAqA----G~~GaVTIATN 90 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAVA----GRRGGVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHTT----TSTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHhc----ccCCcEEeecc
Confidence 346899999999999999999999999999999999999999999999998753 3334455442 33345899999
Q ss_pred ccccccCCCc----------------------------------------------------CceEEEcCCCCCcchHHH
Q 000101 1405 AAGRGLNLQS----------------------------------------------------ADTVIIYDPDPNPKNEEQ 1432 (2239)
Q Consensus 1405 AGGeGLNLqa----------------------------------------------------ADtVIifDppWNP~~dlQ 1432 (2239)
-+|+|.|+.= -=+||-....-+-..+.|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 9999999832 237899999999999999
Q ss_pred hhhhhcccCCcceEEEEEEehhhhhh
Q 000101 1433 AVARAHRIGQKREVKVIYMEAVVDKI 1458 (2239)
Q Consensus 1433 AiGRAhRIGQkKeV~VyrLvaVEEkI 1458 (2239)
--||++|.|.....++|. ++++.+
T Consensus 171 LRGRsGRQGDPGsSrFfl--SLeDdL 194 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFYL--SLGDEL 194 (219)
T ss_dssp HHHTSSGGGCCEEEEEEE--ETTSHH
T ss_pred ccccccccCCCccceeEE--eccHHH
Confidence 999999999877665543 444443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0063 Score=71.40 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH-HHHHHHHHHC---C
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV-NWKSELHKWL---P 1074 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLLs-QW~~Ef~Kwa---P 1074 (2239)
.+-+.|+.++.-++. +.-.||.-..|+|||.++..++..+..... ...++++++|+.... +-...+.+.. +
T Consensus 148 ~~~~~Q~~A~~~al~----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~ 223 (359)
T d1w36d1 148 DEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 223 (359)
T ss_dssp TSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred ccccHHHHHHHHHHc----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcC
Confidence 466789999987774 445788999999999998887777765432 334688888987443 3322222211 1
Q ss_pred CCceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccChhhHHHHHhhccccceEEE
Q 000101 1075 SVSCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1154 (2239)
Q Consensus 1075 slkvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~~SKlskaLk~Lka~rRLL 1154 (2239)
......+...... ......--.......+.. .......+++||||||-.+- .......+..+....+|+
T Consensus 224 ~~~~~~~~~~~~~-------~t~~~ll~~~~~~~~~~~--~~~~~l~~d~lIIDEaSmv~--~~l~~~ll~~~~~~~~lI 292 (359)
T d1w36d1 224 LTDEQKKRIPEDA-------STLHRLLGAQPGSQRLRH--HAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVI 292 (359)
T ss_dssp CCSCCCCSCSCCC-------BTTTSCC-------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEE
T ss_pred chhhhhhhhhhhh-------hHHHHHHhhhhcchHHHH--hhhcccccceeeehhhhccC--HHHHHHHHHHhcCCCEEE
Confidence 0000000000000 000000000001111111 12233578999999998873 233456666777778999
Q ss_pred ecCCCCC
Q 000101 1155 LTGTPLQ 1161 (2239)
Q Consensus 1155 LTGTPIQ 1161 (2239)
|.|-|-|
T Consensus 293 LvGD~~Q 299 (359)
T d1w36d1 293 FLGDRDQ 299 (359)
T ss_dssp EEECTTS
T ss_pred EECChhh
Confidence 9998865
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0079 Score=64.99 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=78.3
Q ss_pred CChHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPsl 1076 (2239)
.++|||....+.+...+.++. + -||+.+.|+|||..+..++.++...........-.|+.. ..+.... ..
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~------~~i~~~~-~~ 74 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGC------QLMQAGT-HP 74 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHH------HHHHHTC-CT
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchh------hhhhhcc-cc
Confidence 478999999998888776543 3 478999999999999988887763222211111222221 1222221 22
Q ss_pred ceEEEecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh-cccCCceEEEecccccccC-hhhHHHHHhhccccceEEE
Q 000101 1077 SCIYYVGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1154 (2239)
Q Consensus 1077 kvvvy~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~-L~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLL 1154 (2239)
.+..+........-....+ ..+...... -..-.+.+|||||+|.|-. ....+.+.|.......+++
T Consensus 75 ~~~~~~~~~~~~~i~~~~i------------r~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fI 142 (207)
T d1a5ta2 75 DYYTLAPEKGKNTLGVDAV------------REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (207)
T ss_dssp TEEEECCCTTCSSBCHHHH------------HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred ccchhhhhhcccccccchh------------hHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceee
Confidence 2222221111000000000 001111111 1223688999999999943 3455666777777777888
Q ss_pred ecCCCCCCC
Q 000101 1155 LTGTPLQND 1163 (2239)
Q Consensus 1155 LTGTPIQNn 1163 (2239)
|+.+-..+-
T Consensus 143 l~t~~~~~l 151 (207)
T d1a5ta2 143 LATREPERL 151 (207)
T ss_dssp EEESCGGGS
T ss_pred eeecChhhh
Confidence 877654433
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=93.73 E-value=0.069 Score=63.51 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEE
Q 000101 1004 YQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1004 YQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy 1081 (2239)
-|=++++-++.....+.+ .+|.--+|+|||+.+.+++..+ .+|+|||||+. ...+|.++|..|+|...+..+
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f 88 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYF 88 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeec
Confidence 477777777776665544 5677789999998877666532 36999999976 678899999999988776655
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.12 Score=56.08 Aligned_cols=133 Identities=20% Similarity=0.111 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCceEEE
Q 000101 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy 1081 (2239)
|.+.+++|...+.++ .+ -||..+.|+|||..+.+++..+......... |..+..++. ++..- ..+.++.+
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~-----~~~~~~~~~-~i~~~-~~~~~~~~ 89 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-----PCGVCDNCR-EIEQG-RFVDLIEI 89 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSS-----CCSCSHHHH-HHHHT-CCTTEEEE
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccC-----ccccchHHH-HHHcC-CCCeEEEe
Confidence 455566666555433 23 4789999999999888777666532222111 211222221 12211 11222222
Q ss_pred ecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhh----cccCCceEEEeccccccc-ChhhHHHHHhhccccceEEEec
Q 000101 1082 VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLLT 1156 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~----L~kikWd~VIIDEAHrIK-N~~SKlskaLk~Lka~rRLLLT 1156 (2239)
....... .+.+...... -...++.+|||||+|.|- +....+.+.|..+....+++|+
T Consensus 90 ~~~~~~~------------------i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~ 151 (239)
T d1njfa_ 90 DAASRTK------------------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 151 (239)
T ss_dssp ETTCSSS------------------HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred cchhcCC------------------HHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 2221110 0111111111 112367899999999983 3344566777776677788887
Q ss_pred CCCCCC
Q 000101 1157 GTPLQN 1162 (2239)
Q Consensus 1157 GTPIQN 1162 (2239)
.+-...
T Consensus 152 tn~~~~ 157 (239)
T d1njfa_ 152 TTDPQK 157 (239)
T ss_dssp ESCGGG
T ss_pred cCCccc
Confidence 664333
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.074 Score=57.08 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH---HHHHHHHHHHHHCCCCceEEE
Q 000101 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA---VLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1005 QleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S---LLsQW~~Ef~KwaPslkvvvy 1081 (2239)
|++-+..++..- ...+-|+..+-|+|||-.++.+..++......+.-+++|.|.. -+.+. +++.+++
T Consensus 2 ~~~~l~~~i~~~-~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~I-R~i~~~~-------- 71 (198)
T d2gnoa2 2 QLETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFL-------- 71 (198)
T ss_dssp HHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHH--------
T ss_pred HHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHH-HHHHHHH--------
Confidence 555555555422 2344599999999999999988876543222222366666632 01111 1111111
Q ss_pred ecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccC-hhhHHHHHhhccccceEEEecCC
Q 000101 1082 VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1158 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGT 1158 (2239)
. ... ...+|.++||||||+|-. ....+.+.|...+...+++|+.+
T Consensus 72 --------------~----------------~~~--~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~ 117 (198)
T d2gnoa2 72 --------------N----------------YSP--ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 117 (198)
T ss_dssp --------------T----------------SCC--SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred --------------h----------------hCc--ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccC
Confidence 0 000 123689999999999943 34456677777777777777644
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.013 Score=63.35 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=29.2
Q ss_pred CceEEEecccccccChh-hHHHHHhhccccceEEEecCCCCCCC
Q 000101 1121 DWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQND 1163 (2239)
Q Consensus 1121 kWd~VIIDEAHrIKN~~-SKlskaLk~Lka~rRLLLTGTPIQNn 1163 (2239)
.+.++||||+|.+.+.. ..+.+.+..+....+++||.+-...-
T Consensus 131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccccccccchhhhcccccccccccceeeeccccch
Confidence 57899999999995433 33455555666667778877654443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.48 E-value=0.28 Score=53.86 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHC
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWL 1073 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SL-LsQW~~Ef~Kwa 1073 (2239)
+|.|-|.++|.|. ....++...-|+|||.+++.-+.+++...+ ....+||++++.. +......+.+..
T Consensus 1 ~L~~eQ~~av~~~------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhCC------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 4889999999762 234577788999999999888888886543 3457999999774 444445555543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=0.13 Score=54.86 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=30.2
Q ss_pred cccCCceEEEecccccccChh-hHHHHHhhccccceEEEecCCCCCCCH
Q 000101 1117 LSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQNDL 1164 (2239)
Q Consensus 1117 L~kikWd~VIIDEAHrIKN~~-SKlskaLk~Lka~rRLLLTGTPIQNnL 1164 (2239)
....++.+||+||+|++.... ..+...+.......+++++.+....-+
T Consensus 97 ~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 97 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence 334578899999999995432 233344455566667777666554433
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=88.80 E-value=0.69 Score=54.57 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEE
Q 000101 1003 DYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIY 1080 (2239)
Q Consensus 1003 PYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvv 1080 (2239)
.-|-++++-++...+.+.+ ..|..-+|++||+.+.+++..+ .+|+|||||.. ...+|.+++..|++...+..
T Consensus 11 ~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~ 84 (408)
T d1c4oa1 11 GDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAVEY 84 (408)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhcCccceee
Confidence 3466778777777777665 4677789999998877666432 35999999976 67889999999998766555
Q ss_pred E
Q 000101 1081 Y 1081 (2239)
Q Consensus 1081 y 1081 (2239)
+
T Consensus 85 f 85 (408)
T d1c4oa1 85 F 85 (408)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.17 Score=53.86 Aligned_cols=43 Identities=28% Similarity=0.467 Sum_probs=28.0
Q ss_pred cCCceEEEecccccccC-hhhHHHHHhhccccceEEEecCCCCC
Q 000101 1119 KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQ 1161 (2239)
Q Consensus 1119 kikWd~VIIDEAHrIKN-~~SKlskaLk~Lka~rRLLLTGTPIQ 1161 (2239)
...+.++||||+|.+-. ....+.+.|.......+++++.+...
T Consensus 97 ~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH 140 (227)
T ss_dssp SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHH
Confidence 34677999999999843 33445555666555666777655433
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.37 E-value=1.2 Score=49.74 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=72.2
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHH----HHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL----DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~L----DILed~L~~rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..|||-.+....+......|..|++.+.....+ ..+..+|...|+.+..++|+++..+|.+++...++++.+ |
T Consensus 113 vGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~--i- 189 (264)
T d1gm5a3 113 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID--V- 189 (264)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--E-
T ss_pred ccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCC--E-
Confidence 358999998888888889999999999876554 445566666689999999999999999999999975544 4
Q ss_pred EEecccc-ccccCCCcCceEEE
Q 000101 1400 LLSIRAA-GRGLNLQSADTVII 1420 (2239)
Q Consensus 1400 LLSTrAG-GeGLNLqaADtVIi 1420 (2239)
||.|+++ -..+.+.+...||+
T Consensus 190 iIGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 190 VIGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp EEECTTHHHHCCCCSCCCEEEE
T ss_pred EEeehHHhcCCCCccccceeee
Confidence 5555554 44566666666665
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.15 E-value=0.73 Score=51.58 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=60.4
Q ss_pred HHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechHHHHHHHHHHHHHCCCCceEEE
Q 000101 1009 LQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081 (2239)
Q Consensus 1009 LqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lie~k~-----~~GP~LIVVP~SLLsQW~~Ef~KwaPslkvvvy 1081 (2239)
+..|+..+. ...|.||.-+.|.|||..+-.+...+.. .. ....++.+-+.+++.. .-|
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~-~~vp~~l~~~~i~~l~~~~liag--------------~~~ 91 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ-GDVPEVMADCTIYSLDIGSLLAG--------------TKY 91 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH-TCSCGGGTTCEEEECCCC---CC--------------CCC
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHh-CCcccccccceeEEeeechHhcc--------------Ccc
Confidence 444444443 3456799999999999888777665553 21 1112233334444421 001
Q ss_pred ecchhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCceEEEecccccccCh------hhHHHHHhhcc--ccceEE
Q 000101 1082 VGAKDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR------ESVLARDLDRY--RCQRRL 1153 (2239)
Q Consensus 1082 ~Gskd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrIKN~------~SKlskaLk~L--ka~rRL 1153 (2239)
.|.-..|- ..-...+....-.+++|||.|.+.+. ...++..|+-+ +...++
T Consensus 92 ~g~~e~r~---------------------~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~v 150 (268)
T d1r6bx2 92 RGDFEKRF---------------------KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 150 (268)
T ss_dssp SSCHHHHH---------------------HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEE
T ss_pred chhHHHHH---------------------HHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeE
Confidence 11111110 01112233344557889999999542 22567777755 445678
Q ss_pred EecCCC
Q 000101 1154 LLTGTP 1159 (2239)
Q Consensus 1154 LLTGTP 1159 (2239)
+.+.||
T Consensus 151 IgatT~ 156 (268)
T d1r6bx2 151 IGSTTY 156 (268)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 888886
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=85.83 E-value=1.5 Score=48.03 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=75.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEEccHHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000101 1324 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1399 (2239)
Q Consensus 1324 ~~SGKLelLdrIL~kLkatGhKVLIFSQ~t~~LDILed~L~~----rGiky~RLDGsts~eeRqeiL~~FNs~ds~~~Vf 1399 (2239)
..|||-++....+......|..|+|.+.......-+...|.. .++.+..++|.++..+|.++...+.+++.+ +
T Consensus 85 vGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---i 161 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---I 161 (233)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---E
T ss_pred CCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCC---E
Confidence 458999999999999999999999999888777776666664 478899999999999999999999976555 5
Q ss_pred EEecccccc-ccCCCcCceEEE
Q 000101 1400 LLSIRAAGR-GLNLQSADTVII 1420 (2239)
Q Consensus 1400 LLSTrAGGe-GLNLqaADtVIi 1420 (2239)
||.|+++-. .+.+.+.-.||+
T Consensus 162 viGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 162 LIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp EEECTHHHHSCCCCSSEEEEEE
T ss_pred EEeehhhhccCCccccccceee
Confidence 667675543 566666656665
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.64 E-value=0.67 Score=49.02 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=30.1
Q ss_pred cCCceEEEecccccccChhh-HHHHHhhccccceEEEecCCCCCCCHHHHH
Q 000101 1119 KVDWKYIIIDEAQRMKDRES-VLARDLDRYRCQRRLLLTGTPLQNDLKELW 1168 (2239)
Q Consensus 1119 kikWd~VIIDEAHrIKN~~S-KlskaLk~Lka~rRLLLTGTPIQNnL~ELw 1168 (2239)
...+.++||||+|.+..... .+...+.......+++++-+-....+..|.
T Consensus 106 ~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 156 (237)
T d1sxjd2 106 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 156 (237)
T ss_dssp CCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ccCceEEEEecccccCHHHHHHHhhcccccccccccccccccccccccccc
Confidence 44678999999999954332 344444455555666666554444444443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.41 E-value=0.54 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 000101 1021 NGILADEMGLGKTVQVMALIAYLM 1044 (2239)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Li 1044 (2239)
+-||....|+|||..+-+++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 459999999999988877776553
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=84.94 E-value=0.93 Score=49.79 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000101 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2239)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lie~k~~~GP~LIVVP~SLLsQW~ 1066 (2239)
.+.||.-..|+|||..+=++...+ ..+++.|-+..++..|.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~~ 83 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMFV 83 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSCT
T ss_pred ceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhhhccc
Confidence 346899999999998887666432 24777777777776544
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.09 E-value=1.1 Score=48.10 Aligned_cols=100 Identities=24% Similarity=0.251 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEE-EechHHHH------HHHHHHHHHCCCCceEEEecchhhH
Q 000101 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLI-IVPNAVLV------NWKSELHKWLPSVSCIYYVGAKDQR 1088 (2239)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lie~k---~~~GP~LI-VVP~SLLs------QW~~Ef~KwaPslkvvvy~Gskd~R 1088 (2239)
..|.||.-+.|.|||..+-.+...+.... ...+..++ +-+.+++. +|...+...+
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il--------------- 107 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVL--------------- 107 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHH---------------
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHH---------------
Confidence 45679999999999988877766655421 01123344 44566663 4555443321
Q ss_pred HHHHHHHhhcCccEEEEehhHHHHhhhhcccC-CceEEEecccccccChhh-----HHHHHhhcc--ccceEEEecCCC
Q 000101 1089 SRLFSQVAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRES-----VLARDLDRY--RCQRRLLLTGTP 1159 (2239)
Q Consensus 1089 k~l~~~i~~~kfdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrIKN~~S-----KlskaLk~L--ka~rRLLLTGTP 1159 (2239)
..+.+. .--+++|||.|.+....+ .....|+-+ +...+++.+.||
T Consensus 108 --------------------------~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~ 160 (195)
T d1jbka_ 108 --------------------------NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 160 (195)
T ss_dssp --------------------------HHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECH
T ss_pred --------------------------HHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCH
Confidence 111111 234789999999964322 234555543 455677778786
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=82.65 E-value=1.7 Score=46.94 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=65.2
Q ss_pred HhCCCCCeEEEechH-HHHHHHHHHHHHCCCCceEEEecc--hhhHHHHHHHHhhcCccEEEEehhHHHHhhhhcccCCc
Q 000101 1046 FKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA--KDQRSRLFSQVAALKFNVLVTTYEFIMYDRSKLSKVDW 1122 (2239)
Q Consensus 1046 ~k~~~GP~LIVVP~S-LLsQW~~Ef~KwaPslkvvvy~Gs--kd~Rk~l~~~i~~~kfdVVITTYE~L~kD~s~L~kikW 1122 (2239)
.....+.+.||||.- -+......+.+++|.+++.+.||. ..++......+..++++|+|+|- ++. .-+.--+-
T Consensus 27 El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt--vIE--vGiDvpnA 102 (211)
T d2eyqa5 27 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT--IIE--TGIDIPTA 102 (211)
T ss_dssp HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS--TTG--GGSCCTTE
T ss_pred HHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh--hhh--hccCCCCC
Confidence 345667899999965 678888999999999999999996 55666777889999999999984 111 11222256
Q ss_pred eEEEeccccccc
Q 000101 1123 KYIIIDEAQRMK 1134 (2239)
Q Consensus 1123 d~VIIDEAHrIK 1134 (2239)
.+|||..|+++.
T Consensus 103 ~~iiI~~a~rfG 114 (211)
T d2eyqa5 103 NTIIIERADHFG 114 (211)
T ss_dssp EEEEETTTTSSC
T ss_pred cEEEEecchhcc
Confidence 789999999984
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.76 E-value=1.8 Score=47.79 Aligned_cols=65 Identities=22% Similarity=0.111 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH-HHHHHHHH
Q 000101 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL-VNWKSELH 1070 (2239)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lie~k~-~~GP~LIVVP~SLL-sQW~~Ef~ 1070 (2239)
.|-+-|.++|++. ....++...-|+|||.+.+.-+++++.... ....+||++++..+ ......+.
T Consensus 11 ~L~~eQ~~~v~~~------~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~ 77 (318)
T d1pjra1 11 HLNKEQQEAVRTT------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQ 77 (318)
T ss_dssp TSCHHHHHHHHCC------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC------CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHH
Confidence 4889999999742 234577778899999999988888876432 22468999987744 33333333
|