Citrus Sinensis ID: 000102
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2239 | 2.2.26 [Sep-21-2011] | |||||||
| H3K2Y6 | 2235 | Mediator of RNA polymeras | yes | no | 0.967 | 0.969 | 0.602 | 0.0 | |
| Q54U49 | 2731 | Putative mediator of RNA | yes | no | 0.113 | 0.093 | 0.260 | 1e-16 | |
| A1CJ92 | 1591 | Mediator of RNA polymeras | N/A | no | 0.078 | 0.109 | 0.256 | 1e-08 | |
| Q0CBX9 | 1583 | Mediator of RNA polymeras | N/A | no | 0.088 | 0.125 | 0.227 | 9e-08 | |
| Q4WWL0 | 1617 | Mediator of RNA polymeras | yes | no | 0.078 | 0.108 | 0.241 | 1e-07 | |
| A1D887 | 1612 | Mediator of RNA polymeras | N/A | no | 0.078 | 0.108 | 0.241 | 1e-07 | |
| Q2U513 | 1594 | Mediator of RNA polymeras | no | no | 0.078 | 0.109 | 0.236 | 2e-07 | |
| P25648 | 1427 | Mediator of RNA polymeras | yes | no | 0.087 | 0.137 | 0.242 | 3e-07 | |
| Q6CKZ5 | 1322 | Mediator of RNA polymeras | yes | no | 0.081 | 0.138 | 0.247 | 7e-07 | |
| Q1EAK2 | 1554 | Mediator of RNA polymeras | N/A | no | 0.094 | 0.136 | 0.238 | 7e-07 |
| >sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana GN=MED12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2580 bits (6686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1363/2263 (60%), Positives = 1682/2263 (74%), Gaps = 97/2263 (4%)
Query: 5 QRSTQLTPYKLKCDKESLNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVRE 64
+R LTPYKLKC+K+ LNSRLGPPDFHP T N PEE LT+EYVQ GYKETV+GL+E E
Sbjct: 42 RRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTSNSPEENLTKEYVQFGYKETVDGLKESEE 101
Query: 65 ISLTQAQTFNKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQ 124
I L+Q TF+KPVV KC+EA+RKCLRAINESRA KRKAGQVYGVPLS SLL KPG FPEQ
Sbjct: 102 IILSQVHTFSKPVVHKCKEAVRKCLRAINESRALKRKAGQVYGVPLSGSLLCKPG-FPEQ 160
Query: 125 RPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTY 184
R CGEE +K+WIE LSQQHKRLRSLAD++P GYR+++LFEVLIRNNVPLLRATWFIKVTY
Sbjct: 161 RSCGEETKKRWIESLSQQHKRLRSLADNIP-GYRRKTLFEVLIRNNVPLLRATWFIKVTY 219
Query: 185 LNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQ 244
LNQVR A SG DK Q SR E WTKDVI+YLQ+LLDE SRN+S Q +RDRSPQ
Sbjct: 220 LNQVRPSPAAISSGTPDKTQASRCEQWTKDVIEYLQYLLDELLSRNSSFPAQQTRDRSPQ 279
Query: 245 TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDK 304
LYTGS Q+ S + + EE SLHFKWWYMVRL+QWH AEGLL P+ I++WVL L++K
Sbjct: 280 MLYTGSMQKNSPASTSLYGEETSLHFKWWYMVRLLQWHHAEGLLFPNLIVDWVLKLLQEK 339
Query: 305 ELLEILQLVLPIIYGVLETVVSSQTYVRSLVGIATHFIREPSPGGSDLVDNSRRAYTISA 364
E+ EILQL+LPI+YGVLE++V SQTYV+SLV IA FI+EP+PGGSDLVDNSRRAYT+SA
Sbjct: 340 EIFEILQLLLPIVYGVLESIVLSQTYVQSLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSA 399
Query: 365 LAEMLRYLILAVPDTFVALDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVF 424
L EM+RYL+LA PDTFVA D FPLP V + ND ++ SKA E++ K+++ S + F
Sbjct: 400 LIEMVRYLVLAAPDTFVASDFFPLPPSVAACGPNDVSYTSKAYENLEKLRSNSAEISAQF 459
Query: 425 RGKAVDAQYQSLSFDNVISAIQRRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREA 484
+G+ V ++++ LSFD IS IQR AD+LAK AS GYP H+VAKAVQALDKAL GDIR A
Sbjct: 460 QGRGVLSRFEFLSFDYTISTIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDIRAA 519
Query: 485 YKHLFEDLCDAALDESWIAEVSPCLRSSLKWIGTVSLSSVCSVFFICEWATCDFRDFRTV 544
Y +LFEDLC+ A+DE+WI +VSPCLRSSL+WIG +S S VCSVFF+ EWATCDFRDFR
Sbjct: 520 YSYLFEDLCNGAVDEAWITDVSPCLRSSLRWIGAISTSFVCSVFFLIEWATCDFRDFRAG 579
Query: 545 PPHGMKFTGRKDFSQIYVAIRLLKQKIRDLHTPPRRKSESTLGIIDNLAKGSRQRNNYAN 604
P +KF+GRKD SQ+Y+ I+LLKQKI LG KG RNN+
Sbjct: 580 VPKDIKFSGRKDCSQVYLVIQLLKQKI--------------LGGEFTARKGKNCRNNFL- 624
Query: 605 RNFQGNGYEIKNNANRLDGLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFI 664
++ G S D FE+PGPLHDIIVCWIDQHE+HK G KR+Q +
Sbjct: 625 ------------GVSKPSG----SMDAFESPGPLHDIIVCWIDQHEVHK-GGAKRLQLLV 667
Query: 665 MELVRAGIFYPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEARI 722
EL+R+GIF P AYVRQL+VSG++D+ +D RR RHHRILK LPG F+ LEEA++
Sbjct: 668 FELIRSGIFNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAQL 727
Query: 723 AEGSQLSEAIHVYSNERRLVLHELLFDQSIYVNVAAQNQKRHMAGGRDGASPSLADQWKT 782
G +LSEA+ YSNERRL+L ELL ++ Y N + ++ +S
Sbjct: 728 FGGDKLSEAVRTYSNERRLLLRELLVEKGKYWNNLVLSDQKSKKISTSLSSVIFPRACNA 787
Query: 783 IQPTTGISSGRSGKSDADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSS 842
+ G + KS DI ELK I+ +LQ P S DE Q SVKRS G+V S
Sbjct: 788 KSNSKG--PRKHTKSSVDIRELKERISALLQFPGMSCGVETPVRDEFQNSVKRSSGSVYS 845
Query: 843 KMDLSEGTPGCEDCKRVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLE-SYKAD 901
KMD E TPGCEDC+R KR K+ +++SS Q +SPI SD+ED WW++KG K +E S K D
Sbjct: 846 KMDQPEATPGCEDCRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTVESSLKVD 905
Query: 902 PPLKSTKQVSRGRQKTVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGET 961
P ++ TKQV RGRQK R+TQSLAQL AARIEGSQGASTSHVCDNK SCPHH GVEGE
Sbjct: 906 PQIEITKQVPRGRQKMARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGEN 965
Query: 962 LKSMDGVRTACYGDIVSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNR 1021
K +D RT+ D+VS+G +LK+L++V+KR++ VWL + RQ +EE +K++ +VGQFNR
Sbjct: 966 QKVVDVFRTSTPVDMVSVGNSLKQLQFVDKRSIAVWLTTAVRQLVEEPQKSSVRVGQFNR 1025
Query: 1022 SFVPVDGRISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRN 1081
PV+ + + RW+L DEL +IL+ +D+ DLVSA KFLLWLLPK ++PS + GRN
Sbjct: 1026 G-APVEEKNTIRWKLGADELYSILFLLDISLDLVSAVKFLLWLLPKANSTPSFAVQGGRN 1084
Query: 1082 ILMLSRNAENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSG 1141
++ + RN EN+ C +GEA L+SSLRRYENI+++ DL+PEA++A M+RAA +M+SNG++SG
Sbjct: 1085 LVTVPRNVENNMCEIGEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISG 1144
Query: 1142 SAAYGYARYLLKKYGNMASVIEWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIE 1201
SAA Y RY+LK+YG++ SV+EW NFKAT +K+LLSEL+ RS +GE G PLGVPAG++
Sbjct: 1145 SAALVYTRYILKRYGSLPSVVEWHNNFKATSEKKLLSELDHTRSGNGEYGNPLGVPAGVD 1204
Query: 1202 DPDDYLRQKIS--GGQLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKS 1259
+PDDYLR+KIS G + SRVGLSMRDV+ RH+EEA HY +KL G+ + +K+
Sbjct: 1205 NPDDYLRKKISIGGARPSRVGLSMRDVLQRHVEEATHYL----KKLIGTGTMKASLAEKN 1260
Query: 1260 DDESQIAQQIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNY 1319
DD Q+AQQI++GLMDC RQTGGAAQEGDPSL+SSAVSAI+ +V ++ +I DF+ G+ Y
Sbjct: 1261 DDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSVARITDFSLGNIY 1320
Query: 1320 QNYASTTGSLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKA 1379
QN+ S S + AR ILRI+ITCLCLLKEALGERQSRVFEIALATE+S AL VF P K
Sbjct: 1321 QNHPSGVDSSNIARYILRIHITCLCLLKEALGERQSRVFEIALATESSTALTGVFAPVKG 1380
Query: 1380 ARSQFQSSPEAHDPNANMSN-DILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERM 1438
+R Q Q SPE++D NAN S D+ N + K+A R +K+TAA+SALV+G++ HGV +LER+
Sbjct: 1381 SRGQHQLSPESYDSNANNSTIDMSNGTGKMALSRATKITAAVSALVIGSITHGVITLERI 1440
Query: 1439 VTVFRLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGL 1498
V + RLK+ LD +QFVR TKS+SNGSARS+G K+++ IEV+VHWFRLLVGNC+TVS+GL
Sbjct: 1441 VGLLRLKDYLDFVQFVRRTKSSSNGSARSMGASKVESPIEVYVHWFRLLVGNCKTVSEGL 1500
Query: 1499 VVEFLGEPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFI--LNNSLAVREDIHQMYQ 1556
V+E +GE S+VA+SRMQRMLPL LVFPPAY I AFVLWRPF+ N++ +V ED H++YQ
Sbjct: 1501 VLELVGESSVVAISRMQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQ 1560
Query: 1557 SLTMAINDAIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPL 1616
SLTMA +D I+HLPFRDVC RD QG Y L+ ADSTDAEFA++ E +GLD+ LKS+AF PL
Sbjct: 1561 SLTMAFHDVIKHLPFRDVCFRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPL 1620
Query: 1617 RARLFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKF 1676
RARLFLN++IDCK+PSS + E G +E+K+ N KL+DKLV VLD LQPAKF
Sbjct: 1621 RARLFLNSLIDCKVPSSGYSHE------GVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKF 1674
Query: 1677 HWQWVELRLLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLV 1736
HWQWVELRLLLNEQAL ++LENH+M L +AIRS P+ EK ASENE NFI+I+LTRLLV
Sbjct: 1675 HWQWVELRLLLNEQALAEKLENHDMPLTDAIRSSCPTSEKPDASENEKNFIQILLTRLLV 1734
Query: 1737 RPDAAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKA 1796
RPDA PLFSE+VHLFGRS+EDSML QA+WFL G DVLFGRKTIRQ+L+ + ESKGL TK
Sbjct: 1735 RPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKP 1794
Query: 1797 QFWKPWGWVNSGFGPGLN---RGDKKKLEATSLEEGEVVEEGIDSKRHGKGSNP-LFDAE 1852
QFWKPWGW NS + G K+K E TS+EEGEV+EEG S+ K P + D
Sbjct: 1795 QFWKPWGWCNSSSSDHITANKAGKKRKFEITSIEEGEVIEEGSGSR---KVLLPRVLDEN 1851
Query: 1853 GTSIGQQHVTERAFIELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTR---GANK 1909
S+G TERAF++LVLPCIDQSSD+SR+TF N+L++Q +NIEQQ+S+VT +NK
Sbjct: 1852 SPSVGYGITTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTSNK 1911
Query: 1910 LTGSVPSGIEVPSNKGSNRKSIRGGSPGLARRLAA-TADPA-PPSPAALRASMSLRLQFL 1967
G+ SG E+ SNKGS RK +RGGSP LARR +A T D + PPSPAALRASMSLRLQFL
Sbjct: 1912 QMGTASSGSEISSNKGSTRKGLRGGSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFL 1971
Query: 1968 LRLLPLIYTDGEPSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQ---SKREVES 2024
LRLLP+I GEPS +N R+ LAS I+RLLGSRVV+ED Y + SP+ SK E ES
Sbjct: 1972 LRLLPVIC--GEPSFKNTRHALASTIVRLLGSRVVYED-----YAVCSPRSELSKAETES 2024
Query: 2025 LPEASSVPSADFSGESLFDRLLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREI 2084
+ SS+ AD S E LFDRLL VL+GLLS+ QP WL+P+P SSN +SKD + FDR+
Sbjct: 2025 TIDPSSM--ADLSSEVLFDRLLFVLHGLLSNHQPKWLKPRP---SSNESSKDFTLFDRDA 2079
Query: 2085 AESLQNDLDHMQLPDTVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGA 2144
AESLQN+L MQLPDT+RWRIQAA+PILLPS+RCSL+CQP SVP AL +QPS S + A
Sbjct: 2080 AESLQNELSRMQLPDTIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSTAAA 2139
Query: 2145 SPGNLNLPQRNPVPLARSATNT--GKSKPIPL----QQDSDME--IDPWTLLEDGAGSGP 2196
QRN +++S T GK KP L QQ++D +DPWTLLED G+
Sbjct: 2140 GTN-----QRNSPAISKSGTAAAQGKLKPTMLAPHQQQEADNTDVVDPWTLLED--GTSS 2192
Query: 2197 SSSNTAAIGSGDQANLQAASWLKGAIRVRRTDLTYIGAVDDDS 2239
S++ A S D ANL+A WLKGA+RVRRTDLTY+G+VDDDS
Sbjct: 2193 GLSSSNASNSSDMANLRATCWLKGAVRVRRTDLTYVGSVDDDS 2235
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Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Flowering regulator which suppresses FLC expression, promotes FT and TSF expression and up-regulates SOC1 and FUL mainly in an FT-dependent manner under long-day conditions. Involved in diverse developmental aspects through gene regulation and modulation of the auxin response. Acts closely together with MAB13. Involved in the regulation of embryo patterning and cotyledon organogenesis by transiently repressing a transcriptional program that interferes with this process. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54U49|MED12_DICDI Putative mediator of RNA polymerase II transcription subunit 12 OS=Dictyostelium discoideum GN=med12 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|A1CJ92|SRB8_ASPCL Mediator of RNA polymerase II transcription subunit 12 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=srb8 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q0CBX9|SRB8_ASPTN Mediator of RNA polymerase II transcription subunit 12 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=srb8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription subunit 12 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=srb8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription subunit 12 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=srb8 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q2U513|SRB8_ASPOR Mediator of RNA polymerase II transcription subunit 12 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=srb8 PE=3 SV=2 | Back alignment and function description |
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| >sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRB8 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6CKZ5|SRB8_KLULA Mediator of RNA polymerase II transcription subunit 12 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SRB8 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q1EAK2|SRB8_COCIM Mediator of RNA polymerase II transcription subunit 12 OS=Coccidioides immitis (strain RS) GN=SRB8 PE=3 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2239 | ||||||
| 359489621 | 2272 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.979 | 0.727 | 0.0 | |
| 255541598 | 2264 | CRP, putative [Ricinus communis] gi|2235 | 0.989 | 0.978 | 0.712 | 0.0 | |
| 224067896 | 2219 | predicted protein [Populus trichocarpa] | 0.965 | 0.973 | 0.701 | 0.0 | |
| 356568392 | 2279 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.971 | 0.655 | 0.0 | |
| 356506220 | 2240 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.969 | 0.644 | 0.0 | |
| 356522612 | 2235 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.972 | 0.643 | 0.0 | |
| 449432154 | 2254 | PREDICTED: mediator of RNA polymerase II | 0.985 | 0.978 | 0.644 | 0.0 | |
| 449480191 | 2254 | PREDICTED: mediator of RNA polymerase II | 0.985 | 0.978 | 0.643 | 0.0 | |
| 357507349 | 2270 | Mediator of RNA polymerase II transcript | 0.982 | 0.969 | 0.638 | 0.0 | |
| 395406780 | 2235 | RecName: Full=Mediator of RNA polymerase | 0.967 | 0.969 | 0.602 | 0.0 |
| >gi|359489621|ref|XP_002274479.2| PREDICTED: uncharacterized protein LOC100263628 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3239 bits (8398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1629/2240 (72%), Positives = 1890/2240 (84%), Gaps = 15/2240 (0%)
Query: 5 QRSTQLTPYKLKCDKESLNSRLGPPDFHPQTPNCPEETLTREYVQNGYKETVEGLEEVRE 64
+R +QLTPYKLKCDKESLNSRLGPPDFHPQT CPEETLT+EYVQ+GY+ETV GLE+ RE
Sbjct: 43 RRQSQLTPYKLKCDKESLNSRLGPPDFHPQTSTCPEETLTQEYVQHGYRETVVGLEDARE 102
Query: 65 ISLTQAQTFNKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQ 124
I+LTQ Q F+KP VLKC+EAIRK LRAINESRAQKRKAGQVYGVPLS SLLTKP VFPEQ
Sbjct: 103 IALTQIQAFSKPTVLKCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLTKPCVFPEQ 162
Query: 125 RPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTY 184
RPCGE+FRKKWIEGLSQ HKRLRSLADHVPHG+RK++LFEVLIRNNVPLLRATWFIKVTY
Sbjct: 163 RPCGEDFRKKWIEGLSQHHKRLRSLADHVPHGFRKKNLFEVLIRNNVPLLRATWFIKVTY 222
Query: 185 LNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQ 244
LNQVR SA+ SG+ DKIQLSRTE+WTKDVIDYLQ LL+EFFSRNNSHSTQ+SRD+S Q
Sbjct: 223 LNQVRPASASISSGSPDKIQLSRTELWTKDVIDYLQGLLEEFFSRNNSHSTQHSRDKSQQ 282
Query: 245 TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDK 304
LY GS Q +SDP + ++SEEPSLHFKWWY+VR++QWH AEGL+LPS II+W L QL+DK
Sbjct: 283 ILYAGSIQHKSDPVSGLDSEEPSLHFKWWYVVRILQWHHAEGLILPSLIIDWALRQLQDK 342
Query: 305 ELLEILQLVLPIIYGVLETVVSSQTYVRSLVGIATHFIREPSPGGSDLVDNSRRAYTISA 364
ELLEILQL+LPIIYGV+ETVV SQTYVR+LVG+A FI+EPSPGGSDLVDNSRRAYT SA
Sbjct: 343 ELLEILQLLLPIIYGVIETVVLSQTYVRTLVGVAVRFIKEPSPGGSDLVDNSRRAYTSSA 402
Query: 365 LAEMLRYLILAVPDTFVALDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVF 424
L EMLR+LILAVPDTFVALDCFPLP CVVS+ ANDG+F++K SED K+KN + V
Sbjct: 403 LVEMLRFLILAVPDTFVALDCFPLPPCVVSHVANDGSFLTKVSEDTIKIKNRPAEVPTVL 462
Query: 425 RGKAVDAQYQSLSFDNVISAIQRRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREA 484
R K +D QY SLSFD+++S+IQ+RADNLAK ASPGYP HS AKAVQALDKAL+ GD+R A
Sbjct: 463 RDKVLDGQYPSLSFDHIVSSIQKRADNLAKAASPGYPCHSEAKAVQALDKALVDGDVRGA 522
Query: 485 YKHLFEDLCDAALDESWIAEVSPCLRSSLKWIGTVSLSSVCSVFFICEWATCDFRDFRTV 544
YK LF+D CD A++E WIAEVSPCLRSSLKWIGTVS S VCSVFF+CEWATCDFRDFRT
Sbjct: 523 YKFLFDDHCDGAVNEGWIAEVSPCLRSSLKWIGTVSSSLVCSVFFLCEWATCDFRDFRTA 582
Query: 545 PPHGMKFTGRKDFSQIYVAIRLLKQKIRDLHTPPRRKSESTLGIIDNLAKGSRQRNNYAN 604
PPH MKFTGRKDFSQ+Y+AIRLLK K+RD+ P K+ ST G I+ LAKGS Q NN +
Sbjct: 583 PPHDMKFTGRKDFSQVYIAIRLLKLKLRDVQNPGCCKNNSTAG-INTLAKGSSQPNNNSG 641
Query: 605 RNFQGNGYEIKNNANRLDGLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFI 664
R N YE KNN +D I+S DIF++PGPLHDIIVCWIDQHE HK EG KR+Q I
Sbjct: 642 RISVVNAYENKNNLKNMDRASIDSLDIFQSPGPLHDIIVCWIDQHEAHKGEGFKRLQLLI 701
Query: 665 MELVRAGIFYPQAYVRQLMVSGILDMNG--LDLNRRRRHHRILKVLPGLFLRVALEEARI 722
MEL R+GIFYPQ YVRQL+VSGI+D G +DL+RR+RH+RILK LPG ++R ALE A++
Sbjct: 702 MELARSGIFYPQVYVRQLIVSGIMDRYGPIVDLDRRKRHYRILKQLPGSYMRDALEGAQV 761
Query: 723 AEGSQLSEAIHVYSNERRLVLHELLFDQSIYVNVAAQNQKR--HM-AGGRDGASPSLADQ 779
E LS+AI +YSNERRLVL LL+DQ N+A+ + +R H+ RDGASP+ DQ
Sbjct: 762 TEVGLLSDAILIYSNERRLVLQGLLWDQYKSKNIASISSRRPKHLPVSARDGASPASVDQ 821
Query: 780 WKTIQPTTGISSGRSGKSDADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGA 839
W+T+Q + + SG++ KS+ADIEELKA+I+ +LQLP+SS TSAD+GLDESQGSVK+S+G+
Sbjct: 822 WRTLQSASNMLSGKTAKSNADIEELKAAISGLLQLPNSSTTSADTGLDESQGSVKKSVGS 881
Query: 840 VSSKMDLSEGTPGCEDCKRVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLESYK 899
+KMDL EGTPGCE+C+R KRQKL EDRSS Q SP SDDED WWVRKGPK ES+K
Sbjct: 882 NCNKMDLVEGTPGCEECRRAKRQKLSEDRSS-YQGHSPNPSDDEDTWWVRKGPKSSESFK 940
Query: 900 ADPPLKSTKQVSRGRQKTVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEG 959
DPPLK+ KQ SRGRQK VR+TQSLAQLAAARIEGSQGASTSHVCDN+ SCPHH+TG+EG
Sbjct: 941 IDPPLKAAKQTSRGRQKIVRKTQSLAQLAAARIEGSQGASTSHVCDNRISCPHHRTGMEG 1000
Query: 960 ETLKSMDGVRTACYGDIVSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQF 1019
E KS+D V+ DIVSIGKALK+LR++EKRT+T+WL ++ RQ +EE EKT AK GQF
Sbjct: 1001 EAPKSIDEVKATHCSDIVSIGKALKQLRFMEKRTITMWLATVVRQFVEENEKTVAKGGQF 1060
Query: 1020 NRSFVPVDGRISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSG 1079
+R F VD R S RW+ E+ELS+ LY MDVC+DLVSAAKFLLWLLPKVL++PSSTI+ G
Sbjct: 1061 SRPF-SVDDRSSLRWKFGEEELSSTLYLMDVCNDLVSAAKFLLWLLPKVLSNPSSTIHGG 1119
Query: 1080 RNILMLSRNAENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRV 1139
R+I+ML RN E+HAC VGEA+LLSS+RRYENI++ATDLIPE LSAT+ RAA VMASNGRV
Sbjct: 1120 RSIMMLPRNVESHACEVGEAYLLSSIRRYENILVATDLIPETLSATVLRAAAVMASNGRV 1179
Query: 1140 SGSAAYGYARYLLKKYGNMASVIEWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAG 1199
SGS A YARYLLKKYGN++SVIEWE++FK+T DKRL+SELESGRSL+GE G PLGVPAG
Sbjct: 1180 SGSLALVYARYLLKKYGNVSSVIEWERHFKSTGDKRLISELESGRSLEGEFGFPLGVPAG 1239
Query: 1200 IEDPDDYLRQKISGGQLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKS 1259
+ED D++ QKIS ++SRVGLSM+D+V R++++A HY + KERKLFA +P+ PAI+K
Sbjct: 1240 VEDLDEFFHQKISHTRVSRVGLSMKDIVQRNVDDALHYLFGKERKLFAPATPKAPAIEKW 1299
Query: 1260 DDESQIAQQIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNY 1319
DD QIAQQI+I LM+C RQTGGAAQEGDPSL+SSAVSAIV NV P+M K+ DF+AG+NY
Sbjct: 1300 DDGYQIAQQIVIQLMECIRQTGGAAQEGDPSLVSSAVSAIVCNVGPSMAKLPDFSAGNNY 1359
Query: 1320 QNYASTTGSLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKA 1379
N+ STT SL+FARRILRI+ITCLCLLKEALGERQSRVFEIALA EAS ALA F P KA
Sbjct: 1360 LNFPSTTSSLNFARRILRIHITCLCLLKEALGERQSRVFEIALAAEASSALATAFAPVKA 1419
Query: 1380 ARSQFQSSPEAHDPNANMSNDILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMV 1439
RSQFQ SPEAHD NA+MSN+ILN+S+K+ GR +K+ AA+SALV+GAV+HGV SLERMV
Sbjct: 1420 PRSQFQLSPEAHDSNASMSNEILNNSAKL--GRATKILAAVSALVIGAVIHGVISLERMV 1477
Query: 1440 TVFRLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLV 1499
TVFRLKEGLDVIQF+RST+SNSNG+ RS+G FK+DNS+EV VHWFRLL+GNC+TV DGLV
Sbjct: 1478 TVFRLKEGLDVIQFIRSTRSNSNGNPRSLGAFKVDNSVEVCVHWFRLLIGNCKTVCDGLV 1537
Query: 1500 VEFLGEPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILNNSLAVREDIHQMYQSLT 1559
V+ +GEPSIVALSRMQR LPL+LVFPPAY IF+FV+WRPFILN ++ REDIHQ+YQSLT
Sbjct: 1538 VDLMGEPSIVALSRMQRTLPLNLVFPPAYSIFSFVVWRPFILNANITNREDIHQLYQSLT 1597
Query: 1560 MAINDAIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRAR 1619
+AI+DAI+HLPFRDVC+RD GFY+LV AD++D+EFAAMLELNG DL L++MAFVPLRAR
Sbjct: 1598 LAISDAIKHLPFRDVCMRDTHGFYDLVAADASDSEFAAMLELNGPDLHLRAMAFVPLRAR 1657
Query: 1620 LFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQ 1679
LFLNAIIDCKMP++ +D + VSGH ESK AENE KLLDKLVH+LD+LQPAKFHWQ
Sbjct: 1658 LFLNAIIDCKMPNTSLTQDDVSWVSGHAESKVPYAENETKLLDKLVHILDTLQPAKFHWQ 1717
Query: 1680 WVELRLLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLVRPD 1739
WVELRLLLNEQAL+++++NH++SLAEAI S+SP+PEKA ASENENNFI IILTRLL RP
Sbjct: 1718 WVELRLLLNEQALVEKVDNHDVSLAEAIHSMSPNPEKAVASENENNFILIILTRLLARPY 1777
Query: 1740 AAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFW 1799
AA LFSE+VHLFGRSLEDS LLQAKWFL G DVLFGRK+IRQRL+NIAESKGLSTK QFW
Sbjct: 1778 AAALFSEVVHLFGRSLEDSTLLQAKWFLVGQDVLFGRKSIRQRLINIAESKGLSTKVQFW 1837
Query: 1800 KPWGWVNSGFGPGLNRGDKKKLEATSLEEGEVVEEGIDSKRHGKGSNPLFDAEGTSIGQQ 1859
KPWGW S P +GDKKK E TSLEEGEVVEEG DSKR+ KGS + D +G ++ QQ
Sbjct: 1838 KPWGWSYSSLDPVATKGDKKKFEVTSLEEGEVVEEGTDSKRYAKGSTQMSDFDGFNVSQQ 1897
Query: 1860 HVTERAFIELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTRGANKLTGSVPSGIE 1919
H TERA +ELVLPCIDQSSDDSRN FA+DLIKQ++ IEQQI+ VTRG K G+V SG+E
Sbjct: 1898 HATERALVELVLPCIDQSSDDSRNAFASDLIKQMHIIEQQINTVTRGTTKQAGTVLSGVE 1957
Query: 1920 VPSNKGSNRKSIRGGSPGLARRLAATADPAPPSPAALRASMSLRLQFLLRLLPLIYTDGE 1979
P+NKG+NRK +RGGSPGLARR AD APPSPAALRASM+LRLQFLLRLLP+I +GE
Sbjct: 1958 GPANKGNNRKGMRGGSPGLARRPTGVADSAPPSPAALRASMALRLQFLLRLLPIICAEGE 2017
Query: 1980 PSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQSKREVESLPEASSVPSADFSGE 2039
S RNMR LASVILRLLGSRVVHEDADLS Y QSP SKRE ESL EAS+ S D SGE
Sbjct: 2018 QS-RNMRQSLASVILRLLGSRVVHEDADLSLYSTQSPPSKREAESLMEASTAASLDLSGE 2076
Query: 2040 SLFDRLLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPD 2099
SLFDRLLLVL+GLLSSCQPSWL+ K A KS+ + K+ SGFDRE AE+LQNDLD MQLPD
Sbjct: 2077 SLFDRLLLVLHGLLSSCQPSWLKSKSASKSTTESIKEFSGFDREAAENLQNDLDCMQLPD 2136
Query: 2100 TVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPL 2159
T+RWRIQAA+PIL+PS RCS++CQPPSV AA+ASLQPS+S PGN N QRN L
Sbjct: 2137 TIRWRIQAAMPILVPSGRCSISCQPPSVSSAAVASLQPSLSFPAFHPGNTNQSQRNSSSL 2196
Query: 2160 ARSATNTGKSKPIPLQQDSDMEIDPWTLLEDGAGSGPSSSNTAAIGSGDQANLQAASWLK 2219
R GK K +PLQQD D+EIDPWTLLEDGAG+GPSS NTA IGSGD ANL+A+SWL+
Sbjct: 2197 VR----PGKLKNMPLQQDHDIEIDPWTLLEDGAGAGPSSGNTAVIGSGDHANLRASSWLR 2252
Query: 2220 GAIRVRRTDLTYIGAVDDDS 2239
G +RVRRTDLTYIGAVDDDS
Sbjct: 2253 GTVRVRRTDLTYIGAVDDDS 2272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541598|ref|XP_002511863.1| CRP, putative [Ricinus communis] gi|223549043|gb|EEF50532.1| CRP, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224067896|ref|XP_002302587.1| predicted protein [Populus trichocarpa] gi|222844313|gb|EEE81860.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356568392|ref|XP_003552395.1| PREDICTED: uncharacterized protein LOC100806985 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356506220|ref|XP_003521885.1| PREDICTED: uncharacterized protein LOC100781696 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356522612|ref|XP_003529940.1| PREDICTED: uncharacterized protein LOC100782672 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449432154|ref|XP_004133865.1| PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449480191|ref|XP_004155825.1| PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357507349|ref|XP_003623963.1| Mediator of RNA polymerase II transcription subunit [Medicago truncatula] gi|87240976|gb|ABD32834.1| 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula] gi|355498978|gb|AES80181.1| Mediator of RNA polymerase II transcription subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|395406780|sp|H3K2Y6.1|MED12_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 12; AltName: Full=Protein CENTER CITY; AltName: Full=Protein CRYPTIC PRECOCIOUS gi|374428817|dbj|BAL49816.1| cryptic precocious [Arabidopsis thaliana] gi|374428819|dbj|BAL49817.1| cryptic precocious splicing variant [Arabidopsis thaliana] gi|374428821|dbj|BAL49818.1| cryptic precocious [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2239 | ||||||
| TAIR|locus:2126056 | 2235 | CCT "CENTER CITY" [Arabidopsis | 0.711 | 0.712 | 0.562 | 0.0 | |
| DICTYBASE|DDB_G0281277 | 2731 | med12 "putative mediator compl | 0.095 | 0.077 | 0.282 | 1.5e-17 | |
| SGD|S000000677 | 1427 | SRB8 "Subunit of the RNA polym | 0.092 | 0.145 | 0.241 | 1.2e-05 | |
| UNIPROTKB|G4NLU5 | 1569 | MGG_02846 "Uncharacterized pro | 0.075 | 0.107 | 0.259 | 0.00014 | |
| UNIPROTKB|Q2KFT1 | 1690 | MGCH7_ch7g604 "Putative unchar | 0.093 | 0.123 | 0.256 | 0.00031 |
| TAIR|locus:2126056 CCT "CENTER CITY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4480 (1582.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 929/1651 (56%), Positives = 1164/1651 (70%)
Query: 615 KNNANRLDGLR--INSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGI 672
KN N G+ S D FE+PGPLHDIIVCWIDQHE+HK G KR+Q + EL+R+GI
Sbjct: 617 KNCRNNFLGVSKPSGSMDAFESPGPLHDIIVCWIDQHEVHKG-GAKRLQLLVFELIRSGI 675
Query: 673 FYPQAYVRQLMVSGILDM--NGLDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSE 730
F P AYVRQL+VSG++D+ +D RR RHHRILK LPG F+ LEEA++ G +LSE
Sbjct: 676 FNPIAYVRQLIVSGMIDVIQPAVDPERRMRHHRILKQLPGCFVHETLEEAQLFGGDKLSE 735
Query: 731 AIHVYSNERRLVLHELLFDQSIYVNVAAQNQKRHMAGGRDGASPSLADQWKTIQPTTGIS 790
A+ YSNERRL+L ELL ++ Y N + ++ +S + G
Sbjct: 736 AVRTYSNERRLLLRELLVEKGKYWNNLVLSDQKSKKISTSLSSVIFPRACNAKSNSKG-- 793
Query: 791 SGRSGKSDADIEELKASIAVILQLPSSSATSADSGLDESQGSVKRSLGAVSSKMDLSEGT 850
+ KS DI ELK I+ +LQ P S DE Q SVKRS G+V SKMD E T
Sbjct: 794 PRKHTKSSVDIRELKERISALLQFPGMSCGVETPVRDEFQNSVKRSSGSVYSKMDQPEAT 853
Query: 851 PGCEDCKRVKRQKLCEDRSSVLQISSPIHSDDEDLWWVRKGPKPLES-YKADPPLKSTKQ 909
PGCEDC+R KR K+ +++SS Q +SPI SD+ED WW++KG K +ES K DP ++ TKQ
Sbjct: 854 PGCEDCRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIKKGSKTVESSLKVDPQIEITKQ 913
Query: 910 VSRGRQKTVRRTQSLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVR 969
V RGRQK R+TQSLAQL AARIEGSQGASTSHVCDNK SCPHH GVEGE K +D R
Sbjct: 914 VPRGRQKMARKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENQKVVDVFR 973
Query: 970 TACYGDIVSIGKALKKLRYVEKRTVTVWLISIARQHIEEAEKTAAKVGQFNRSFVPVDGR 1029
T+ D+VS+G +LK+L++V+KR++ VWL + RQ +EE +K++ +VGQFNR PV+ +
Sbjct: 974 TSTPVDMVSVGNSLKQLQFVDKRSIAVWLTTAVRQLVEEPQKSSVRVGQFNRG-APVEEK 1032
Query: 1030 ISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNILMLSRNA 1089
+ RW+L DEL +IL+ +D+ DLVSA KFLLWLLPK ++PS + GRN++ + RN
Sbjct: 1033 NTIRWKLGADELYSILFLLDISLDLVSAVKFLLWLLPKANSTPSFAVQGGRNLVTVPRNV 1092
Query: 1090 ENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYAR 1149
EN+ C +GEA L+SSLRRYENI+++ DL+PEA++A M+RAA +M+SNG++SGSAA Y R
Sbjct: 1093 ENNMCEIGEAILVSSLRRYENILLSADLVPEAMTALMNRAASLMSSNGKISGSAALVYTR 1152
Query: 1150 YLLKKYGNMASVIEWEKNFKATCDKXXXXXXXXXXXXXXXXXXPLGVPAGIEDPDDYLRQ 1209
Y+LK+YG++ SV+EW NFKAT +K PLGVPAG+++PDDYLR+
Sbjct: 1153 YILKRYGSLPSVVEWHNNFKATSEKKLLSELDHTRSGNGEYGNPLGVPAGVDNPDDYLRK 1212
Query: 1210 KIS--GGQLSRVGLSMRDVVHRHMEEAFHYFYDKERKLFAAGSPRNPAIDKSDDESQIAQ 1267
KIS G + SRVGLSMRDV+ RH+EEA HY +KL G+ + +K+DD Q+AQ
Sbjct: 1213 KISIGGARPSRVGLSMRDVLQRHVEEATHYL----KKLIGTGTMKASLAEKNDDGYQVAQ 1268
Query: 1268 QIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNYASTTG 1327
QI++GLMDC RQTGGAAQEGDPSL+SSAVSAI+ +V ++ +I DF+ G+ YQN+ S
Sbjct: 1269 QIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVGLSVARITDFSLGNIYQNHPSGVD 1328
Query: 1328 SLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSS 1387
S + AR ILRI+ITCLCLLKEALGERQSRVFEIALATE+S AL VF P K +R Q Q S
Sbjct: 1329 SSNIARYILRIHITCLCLLKEALGERQSRVFEIALATESSTALTGVFAPVKGSRGQHQLS 1388
Query: 1388 PEAHDPNANMSN-DILNSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKE 1446
PE++D NAN S D+ N + K+A R +K+TAA+SALV+G++ HGV +LER+V + RLK+
Sbjct: 1389 PESYDSNANNSTIDMSNGTGKMALSRATKITAAVSALVIGSITHGVITLERIVGLLRLKD 1448
Query: 1447 GLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEFLGEP 1506
LD +QFVR TKS+SNGSARS+G K+++ IEV+VHWFRLLVGNC+TVS+GLV+E +GE
Sbjct: 1449 YLDFVQFVRRTKSSSNGSARSMGASKVESPIEVYVHWFRLLVGNCKTVSEGLVLELVGES 1508
Query: 1507 SIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILN-NS-LAVREDIHQMYQSLTMAIND 1564
S+VA+SRMQRMLPL LVFPPAY I AFVLWRPF+ N NS +V ED H++YQSLTMA +D
Sbjct: 1509 SVVAISRMQRMLPLKLVFPPAYSIIAFVLWRPFVSNSNSNSSVHEDTHRLYQSLTMAFHD 1568
Query: 1565 AIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNA 1624
I+HLPFRDVC RD QG Y L+ ADSTDAEFA++ E +GLD+ LKS+AF PLRARLFLN+
Sbjct: 1569 VIKHLPFRDVCFRDTQGLYELIVADSTDAEFASVFESHGLDMHLKSVAFAPLRARLFLNS 1628
Query: 1625 IIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELR 1684
+IDCK+PSS + E G +E+K+ N KL+DKLV VLD LQPAKFHWQWVELR
Sbjct: 1629 LIDCKVPSSGYSHE------GVSEAKNRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELR 1682
Query: 1685 LLLNEQALIDRLENHEMSLAEAIRSLSPSPEKAAASENENNFIEIILTRLLVRPDAAPLF 1744
LLLNEQAL ++LENH+M L +AIRS P+ EK ASENE NFI+I+LTRLLVRPDA PLF
Sbjct: 1683 LLLNEQALAEKLENHDMPLTDAIRSSCPTSEKPDASENEKNFIQILLTRLLVRPDAVPLF 1742
Query: 1745 SELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFWKPWGW 1804
SE+VHLFGRS+EDSML QA+WFL G DVLFGRKTIRQ+L+ + ESKGL TK QFWKPWGW
Sbjct: 1743 SEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGW 1802
Query: 1805 VNSGFGPGL--NR-GDKKKLEATSLEEGEVVEEGIDSKRHGKGSNP-LFDAEGTSIGQQH 1860
NS + N+ G K+K E TS+EEGEV+EEG S+ K P + D S+G
Sbjct: 1803 CNSSSSDHITANKAGKKRKFEITSIEEGEVIEEGSGSR---KVLLPRVLDENSPSVGYGI 1859
Query: 1861 VTERAFIELVLPCIDQSSDDSRNTFANDLIKQLNNIEQQISAVTRGA---NKLTGSVPSG 1917
TERAF++LVLPCIDQSSD+SR+TF N+L++Q +NIEQQ+S+VT + NK G+ SG
Sbjct: 1860 TTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTNRSTTSNKQMGTASSG 1919
Query: 1918 IEVPSNKGSNRKSIRGGSPGLARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYTD 1977
E+ SNKGS RK +RGGSP LARR
Sbjct: 1920 SEISSNKGSTRKGLRGGSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFLLRLLPVIC 1979
Query: 1978 GEPSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQS---KREVESLPEASSVPSA 2034
GEPS +N R+ LAS I+RLLGSRVV+ED Y + SP+S K E ES + SS+ A
Sbjct: 1980 GEPSFKNTRHALASTIVRLLGSRVVYED-----YAVCSPRSELSKAETESTIDPSSM--A 2032
Query: 2035 DFSGESXXXXXXXXXXXXXSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDH 2094
D S E S+ QP WL+P+P SSN +SKD + FDR+ AESLQN+L
Sbjct: 2033 DLSSEVLFDRLLFVLHGLLSNHQPKWLKPRP---SSNESSKDFTLFDRDAAESLQNELSR 2089
Query: 2095 MQLPDTVRWRIQAAIPILLPSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQR 2154
MQLPDT+RWRIQAA+PILLPS+RCSL+CQP SVP AL +QPS S + A N P
Sbjct: 2090 MQLPDTIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSTAAAGTNQRNSPA- 2148
Query: 2155 NPVPLARSATNTGKSKPIPL----QQDSDME--IDPWTLLEDGAGSGPSSSNTAAIGSGD 2208
+ + +A GK KP L QQ++D +DPWTLLEDG SG SSSN A S D
Sbjct: 2149 --ISKSGTAAAQGKLKPTMLAPHQQQEADNTDVVDPWTLLEDGTSSGLSSSN--ASNSSD 2204
Query: 2209 QANLQAASWLKGAIRVRRTDLTYIGAVDDDS 2239
ANL+A WLKGA+RVRRTDLTY+G+VDDDS
Sbjct: 2205 MANLRATCWLKGAVRVRRTDLTYVGSVDDDS 2235
|
|
| DICTYBASE|DDB_G0281277 med12 "putative mediator complex subunit 12" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| SGD|S000000677 SRB8 "Subunit of the RNA polymerase II mediator complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4NLU5 MGG_02846 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2KFT1 MGCH7_ch7g604 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| H3K2Y6 | MED12_ARATH | No assigned EC number | 0.6022 | 0.9673 | 0.9691 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2239 | |||
| pfam09497 | 64 | pfam09497, Med12, Transcription mediator complex s | 3e-20 |
| >gnl|CDD|192306 pfam09497, Med12, Transcription mediator complex subunit Med12 | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-20
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 122 PEQRPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIK 181
P + + R+ W++ L+ + L LA +PHG+RK+ LFE L NVPL RA W IK
Sbjct: 5 PPRVTLTDSKREAWLKDLANPNVPLSKLAKKIPHGFRKKELFEQLCNKNVPLDRAIWLIK 64
|
Med12 is a negative regulator of the Gli3-dependent sonic hedgehog signalling pathway via its interaction with Gli3 within the RNA polymerase II transcriptional Mediator. A complex is formed between Med12, Med13, CDK8 and CycC which is responsible for suppression of transcription. This subunit forms part of the Kinase section of Mediator. Length = 64 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2239 | |||
| KOG4522 | 1427 | consensus RNA polymerase II transcription mediator | 100.0 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 100.0 | |
| PF12145 | 480 | Med12-LCEWAV: Eukaryotic Mediator 12 subunit domai | 100.0 | |
| KOG4522 | 1427 | consensus RNA polymerase II transcription mediator | 99.9 | |
| PF09497 | 64 | Med12: Transcription mediator complex subunit Med1 | 99.85 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 99.0 |
| >KOG4522 consensus RNA polymerase II transcription mediator [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-217 Score=1926.88 Aligned_cols=1412 Identities=50% Similarity=0.757 Sum_probs=1259.6
Q ss_pred HHHHHHHhhCCCceecCCCCCCCcccccccccCccccccchhhhhccccCCcchhhhhcccchhhhcccccchhhHHHHH
Q 000102 367 EMLRYLILAVPDTFVALDCFPLPSCVVSYAANDGNFVSKASEDVGKMKNYSTDAICVFRGKAVDAQYQSLSFDNVISAIQ 446 (2239)
Q Consensus 367 ~LLQ~L~LacPDAFVpPD~WPlppsvLP~p~n~~~fl~kasee~~~lk~~~~E~~~~~Rskave~ry~~LSf~~si~sIQ 446 (2239)
.|.+++.++-|+ .-|.+|++|+. ++.....+. .++.+++.+++|+..-+++++|.. +..++|++....|+
T Consensus 3 n~~~r~~l~pP~---~~D~~Pl~pc~-----~d~s~~s~d-~~l~~l~s~~~~i~anF~~~gv~~-~pfl~fd~is~~~r 72 (1427)
T KOG4522|consen 3 NMVRRLVLAPPD---ASDFFPLPPCP-----NDVSYTSKD-YELEKLRSNSAEISANFQGRGVLS-FPFLSFDYISSTIR 72 (1427)
T ss_pred ccccccccCCCC---ccccCcCCCCC-----CchhhcCcc-ccHHHhhcchhhhhhhhhcccccc-ccccchhhhhhhhh
Confidence 466788888886 35677777752 233333332 347788989999999999999999 89999999999999
Q ss_pred HHhHhhhhccCCCCCCCcHhHHHHHhhhhhccCCHHHHHHHHhhhhhhccccccchhccCccccccccccccccccccce
Q 000102 447 RRADNLAKDASPGYPGHSVAKAVQALDKALLQGDIREAYKHLFEDLCDAALDESWIAEVSPCLRSSLKWIGTVSLSSVCS 526 (2239)
Q Consensus 447 kRn~~Lak~anp~~~~~~~akvVQaLDkalss~DI~~aY~~lF~dl~d~~vsedwi~eVSPcl~~sl~w~gtv~lsli~s 526 (2239)
+...++++.++-++|+|+..+.||+||++++++|++.+|..+|+++| +.+++.||.-++ +|+ +.|+|..++|++ +
T Consensus 73 ~Sv~~~~~~as~~l~Qh~~k~~v~~l~~~~s~~~~r~~~s~l~ep~~-gf~~p~rITl~~--~R~-~rWl~~lSts~v-s 147 (1427)
T KOG4522|consen 73 RSVDDLAKIASAGLPQHNVKKAVQALDKALSDGDIRAAYSYLFEPLC-GFVDPARITLVS--LRS-LRWLGALSTSFV-S 147 (1427)
T ss_pred hhhhhHHHHHhccchhhhHHHHHHHHHHHhhcccccccceeecCCcc-cCCCCceeeehh--hhH-HHHHHhhcccch-h
Confidence 99999999999899999999999999999999999999999999999 688999998888 675 999999999998 9
Q ss_pred eeeeeecccccCCCCCCCCCCCccccccCcchhHHHHHHHHHHhhhc-cCCCCCCCCCcccccccccccccccccccccc
Q 000102 527 VFFICEWATCDFRDFRTVPPHGMKFTGRKDFSQIYVAIRLLKQKIRD-LHTPPRRKSESTLGIIDNLAKGSRQRNNYANR 605 (2239)
Q Consensus 527 Vf~LCEWAtt~fR~~r~~~~~~~kftgRk~lsqVYiAvrLLk~K~~e-i~~~~r~k~~s~~~i~~~~~Kgs~~~~~~~~~ 605 (2239)
+++|.+|+.+++|++|...|+++||. +++|.|+-|+|.++-. +.. ||...++|.
T Consensus 148 l~~lik~iphgl~~~~~i~~~~iKF~-----~p~~raIwlikc~~~~E~~s-----------------~~kk~r~n~--- 202 (1427)
T KOG4522|consen 148 LFFLIKWIPHGLRDFRAIVPKDIKFS-----SPVYRAIWLIKCKILGEFTS-----------------KGKKCRNNF--- 202 (1427)
T ss_pred HHHHHhhCCcccchhhhhhhhheeec-----chHHHHHHHHHHhHHHHHHh-----------------hhhhhcccc---
Confidence 99999999999999999999999995 7899999999955433 221 233344432
Q ss_pred cccCCcccccccccccccccccCCCccCCCCCccceeeecccccccccccccchhhhhhHHhhhcCCCChHHHHHHHHHh
Q 000102 606 NFQGNGYEIKNNANRLDGLRINSSDIFETPGPLHDIIVCWIDQHEIHKREGVKRVQHFIMELVRAGIFYPQAYVRQLMVS 685 (2239)
Q Consensus 606 ~~~~~~~~~~~~s~~ld~~~~~ss~ifespgpLqDIIv~fLDq~~~~k~~~~k~L~~Lf~ELIRsGiFS~~aYVr~LIar 685 (2239)
+++|| +|| |++|.||.|| ..+|-|++++|+|.|-+|+ |||.+
T Consensus 203 ------------~gs~D--------a~~-----~~~ik~WtD~------------~~~vle~~is~~~N~~ad~-q~i~s 244 (1427)
T KOG4522|consen 203 ------------LGSMD--------AFE-----HDIIKCWTDQ------------QLLVLELIISGIFNPIADV-QLIVS 244 (1427)
T ss_pred ------------cccch--------hhH-----HHHHHHhHHH------------HHHHHHHHHHHhcCcchhH-HHHHH
Confidence 13333 454 9999999888 6789999999999999999 78888
Q ss_pred CccCCCCCCcccccchhhHhhhCCCCchHHHHHHhhhccchhhHHHHHHHHhhhHhhhhccccccchhhhhhcccccccc
Q 000102 686 GILDMNGLDLNRRRRHHRILKVLPGLFLRVALEEARIAEGSQLSEAIHVYSNERRLVLHELLFDQSIYVNVAAQNQKRHM 765 (2239)
Q Consensus 686 Gil~~~~~d~er~~rh~rlLkqLPg~~l~~~L~~a~i~e~~~l~e~~~~y~~eRrl~L~~~~~~~~~~~~~~~~~~~~~~ 765 (2239)
|..+.. ++||+||+++.+. |+||||++|+++..+... .+. ..
T Consensus 245 ~~~dv~-----------y~LKllg~c~~~e-------------------l~n~~~fllr~v~f~~g~----~d~----~~ 286 (1427)
T KOG4522|consen 245 GMIDVI-----------YILKLLGGCFVHE-------------------LSNERRFLLREVLFEKGK----SDQ----KS 286 (1427)
T ss_pred HHHHHH-----------HHHHHhhhhHHHH-------------------hcchhHhhhhheeeecCc----ccc----cc
Confidence 876543 8999999998765 999999999998877643 111 22
Q ss_pred CCCCCCCCCcccccccccccCCCCCCCCCCCCcccHHHHHHHHHHHhcCCCCCCCCCC-CCccccccccccccccccccc
Q 000102 766 AGGRDGASPSLADQWKTIQPTTGISSGRSGKSDADIEELKASIAVILQLPSSSATSAD-SGLDESQGSVKRSLGAVSSKM 844 (2239)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~k~~is~ll~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~ 844 (2239)
.+.+-..+++.+++.+++.+++ + .||.+. ||+++||+.+ ++-++ .-++|.+.|++++.++.|.+|
T Consensus 287 k~~Slh~~~v~~~~~c~~~sn~--p-~~~t~s----------~s~~~qFf~~-s~i~~t~v~~~~~~S~~~~s~~~yi~~ 352 (1427)
T KOG4522|consen 287 KKISLHLSSVIFPRACNAKSNS--P-RKHTKS----------ISALLQFFGM-SCIVETPVRDEFQNSVKRSSGSVYIKM 352 (1427)
T ss_pred cceeeeehhhccchhhccccCC--c-hhhccc----------hhhhccccch-hheehhhhhHHHhhhheeccCceeEec
Confidence 3445567888999999999887 3 567654 9999999998 77777 678999999999999999999
Q ss_pred ccCCCCCCchhhhhhhhhcccccCCCcee-ccCCCCCCCcccceeecCCCCCCc-cccCCCCCccccccccccchhhhhh
Q 000102 845 DLSEGTPGCEDCKRVKRQKLCEDRSSVLQ-ISSPIHSDDEDLWWVRKGPKPLES-YKADPPLKSTKQVSRGRQKTVRRTQ 922 (2239)
Q Consensus 845 d~~~~~~gce~c~r~krqkl~~~~~~~~q-~~~~~~sd~ed~wwv~k~~k~~e~-~k~~~~~k~~kq~~~~r~k~vrktq 922 (2239)
|..+.| +|+|+|+.|++++..++|| |.++|-++++|+||++|++|..++ +|++ ..+||+.||||++-||||
T Consensus 353 Dqp~n~----~~k~~~l~k~~s~~l~~~qe~n~eif~fpt~nW~i~Kp~~~~~~s~~~~---~~~~d~p~~~~l~s~~~e 425 (1427)
T KOG4522|consen 353 DQPENT----DCKRAKLPKMNSEKLSCYQEGNSEIFSFPTDNWWIKKPSKTVESSLKVD---EITKDVPRGRQLMSRKTE 425 (1427)
T ss_pred CCccch----hhHHHhhHHHHHHHHHHHHhcCcceeecccccccccCCeeEEEeecccc---chhhcccchHHHHHHHHH
Confidence 999998 9999999999999999999 999999999999999999999886 4666 679999999999999999
Q ss_pred hHHHHHHhcccCCCCCccccccCCCCCCCCCCCCCCCCccccccccccccccchHHHHHhhhcccccccchhHHHHHHHH
Q 000102 923 SLAQLAAARIEGSQGASTSHVCDNKGSCPHHKTGVEGETLKSMDGVRTACYGDIVSIGKALKKLRYVEKRTVTVWLISIA 1002 (2239)
Q Consensus 923 slaqlaa~riegsqgastsh~c~~k~scphh~~~~~~~~~k~~d~~~~~~~~d~~~ig~~lk~lr~~e~r~~~~wl~~~v 1002 (2239)
||||..+|||||+|||||+|+|+|+||||||.++.+|+|++++|-+++.++.|++++|..+|+|.|..+|+|.+|+++.+
T Consensus 426 sl~~ns~ar~~~~~~ast~~f~l~iVsC~~fp~~~~g~n~~~~d~fkll~p~~~~pvy~~~~pL~~h~~~~~~~W~i~~~ 505 (1427)
T KOG4522|consen 426 SLAQNSAARIEGSQGASTSHFCLNIVSCPHFPPGVEGENQKVVDVFKLLTPVDMVPVYNSLKPLQFHDKRSIAVWLITAV 505 (1427)
T ss_pred HHhhhhhHHHhhcccccccceeeeEEecCCCCccccchhhhHHHHHHhcCcccccccccCccceeeeeehheeeeeechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccccccccCCCcccceecCccchhhhhhhhhhchhHHHHHHHHHHhcccccCCCCCCccCCccc
Q 000102 1003 RQHIEEAEKTAAKVGQFNRSFVPVDGRISGRWRLSEDELSAILYFMDVCDDLVSAAKFLLWLLPKVLNSPSSTINSGRNI 1082 (2239)
Q Consensus 1003 rql~e~~e~~~~k~~~~~~~~~~~~~~~~~rw~lg~del~~~ly~~d~~~dl~s~~~~llwll~k~~~~~~~~~~~gr~~ 1082 (2239)
||++|+..+..+.++||+|. ++ .||+.++++|+|+.-|||++. |
T Consensus 506 rqf~~~~~n~~V~~~~~nr~-------Nt------~De~l~~~~i~D~~lslV~~l--------------------~--- 549 (1427)
T KOG4522|consen 506 RQFVEEPQNSSVRVGQFNRK-------NT------ADELLSILFILDISLSLVSAL--------------------G--- 549 (1427)
T ss_pred HhhCcCccchhHHHHHhhcc-------cc------hhhhhHHHHHHHHHHHHHHHh--------------------c---
Confidence 99999999999999999993 22 799999999999999999986 3
Q ss_pred cccccccCCCccchhhHHHHHHHhhhhhHHHhcccchHHHHHHHHhhHHHHhcCCcccccchHHHHHHHHHHhCCchhHH
Q 000102 1083 LMLSRNAENHACGVGEAFLLSSLRRYENIIIATDLIPEALSATMHRAAQVMASNGRVSGSAAYGYARYLLKKYGNMASVI 1162 (2239)
Q Consensus 1083 ~~~~~n~e~~~c~vgea~l~ssl~ryenil~a~dl~pe~ls~~~~r~~~~~~s~~r~~~s~~~~y~ry~lkky~~~~sv~ 1162 (2239)
||+|||.|.+|||.+. ||||+|||++.|++ ++++.|+|+|+ +| |.||.++
T Consensus 550 ----~n~e~n~cvi~~a~~~--l~rllniL~s~g~v--~~~~yi~rlaS--------sG-----ylr~~~~--------- 599 (1427)
T KOG4522|consen 550 ----RNVENNMCVIGEAILV--LRRLLNILLSAGLV--AMTAYINRLAS--------SG-----YLRYILK--------- 599 (1427)
T ss_pred ----cccccchhhHHHHHHH--HHHHHHHHHhcchH--hHHHHHHHHHh--------cc-----hhHHHhc---------
Confidence 7899999999999886 99999999999999 89999999665 22 9999998
Q ss_pred HHHhhhhhhhhhhhHhhhccCccccCCcCcCCCCcCCCCCCchhhhhhccCCcccccccchHHHHHHhHHHHHHhhhhhh
Q 000102 1163 EWEKNFKATCDKRLLSELESGRSLDGELGLPLGVPAGIEDPDDYLRQKISGGQLSRVGLSMRDVVHRHMEEAFHYFYDKE 1242 (2239)
Q Consensus 1163 ~wek~fk~t~d~rl~~el~~~rs~dg~~~~~~gv~ag~ed~d~~~rqki~~~r~srv~~~m~d~vqr~~~e~~~~~~~k~ 1242 (2239)
++|+.+..+.+++||+..|+..||+ |+.++|||.|.|++..- ++|+|||| ||+
T Consensus 600 ---N~~f~~~q~kil~~l~~lr~sq~~~--------~l~N~~~Y~~kk~~if~-----------~d~~Ve~~-eyl---- 652 (1427)
T KOG4522|consen 600 ---NNFFATSQKKILSELDHLRSSQGEY--------GLDNPDDYLRKKISIFG-----------LDRHVEEA-EYL---- 652 (1427)
T ss_pred ---cchhHHHHHHHHhcCcHhhhccccc--------ccCCHHHHHHHhhhccc-----------hhhhhhHH-HHH----
Confidence 8999999999999999999999999 67999999999998632 89999999 999
Q ss_pred hhhhccCCCCCCCCCCCchhhHHHHHHHHHHHHHHHhcCCCCCCCChhhHhHhHHhhhccccchhhccccccCCCCCCCC
Q 000102 1243 RKLFAAGSPRNPAIDKSDDESQIAQQIIIGLMDCFRQTGGAAQEGDPSLLSSAVSAIVGNVIPTMVKIHDFTAGSNYQNY 1322 (2239)
Q Consensus 1243 ~~~~~~~~~k~~~~ek~~~~yq~a~~iv~gl~dcirq~gga~~~gd~slv~savsaiv~~~g~~~ak~~d~~~g~n~~~~ 1322 (2239)
++++++|+.|+..+||.+++||+|+|++.|+|+|+|| ||++||+||+..+|-.+|.+.||..|+.|+++
T Consensus 653 K~~i~t~~~~~~~~~k~~~s~~v~~~e~y~~~~cs~~-----------Lvs~a~T~i~k~~~~~~~~l~~Fh~~~~fqv~ 721 (1427)
T KOG4522|consen 653 KKLIGTGTMKASLAEKNDDSYQVAQQEVYGLMDCSRQ-----------LVSSAVTAIIKSVGLSVARLTDFHLGNIFQVH 721 (1427)
T ss_pred HHHhcccchhhhhhccCCchhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 4568999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHhhhhHHHHhhHHHhhcchhhhhhhhhhhchhhhhhccccCCcccccccCCCCCCCCCCCCcchhhc
Q 000102 1323 ASTTGSLSFARRILRIYITCLCLLKEALGERQSRVFEIALATEASCALARVFTPGKAARSQFQSSPEAHDPNANMSNDIL 1402 (2239)
Q Consensus 1323 ~~~~~sl~~~r~il~~hi~~l~llkealger~srvfeiala~eas~~~~~~f~p~k~~r~qfq~spe~~d~~~~~~n~~~ 1402 (2239)
++.. |-|.+|.|||+| |||+ ++|+|| ++||||||||+ |+|.+.+|.|.|.+|+ .|.+-|+.
T Consensus 722 ~~lv-sdn~~~~~l~~~--clC~--q~Lf~~--fI~~~~l~Tes-------f~~v~~~~gk~~~vpa-----~N~T~dmp 782 (1427)
T KOG4522|consen 722 PSLV-SDNIARYILRIH--CLCL--QALFER--FIFEIALATES-------FAPVKGSRGKHQLVPA-----NNSTIDMP 782 (1427)
T ss_pred hhhh-hhHHHHHHHHHH--HHHH--HHHHHH--HHHHHhhhhhh-------HHHHHhhhhhhhcccc-----ccccccCc
Confidence 9888 899999999988 9998 999999 89999999998 9999999999999995 34455554
Q ss_pred cCccccccccchhHHHHHHHHHHHHhhhchhhhhhhhhhheeccccceeeecccccCCCCCCcccccceeccCceEEeee
Q 000102 1403 NSSSKVASGRTSKVTAAISALVVGAVLHGVTSLERMVTVFRLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVH 1482 (2239)
Q Consensus 1403 ~~~~~~~~~~~~k~~aa~salvvgai~~gv~slermv~vlrlkegld~~~~~r~~~~~sng~~rs~~~~k~~~s~ev~vh 1482 (2239)
| . +...-|.+||+||+||||+ -|||+++|+.| ++|+|+.+|.++|+|.+++.|| .+|++|+- |+++|
T Consensus 783 ~-~-k~~l~~f~~It~~~s~l~i---~~~~V~y~d~~-l~~~K~~~Dfvefl~~~~~~sn-s~~avg~T------~~~~~ 849 (1427)
T KOG4522|consen 783 N-G-KMALSRFTKITAAVSALVI---THGVVTYEDIV-LLRLKDYLDFVEFLRRTKSSSN-SARAVGAT------EVYVH 849 (1427)
T ss_pred c-H-HHHHHhhHHHHHHhhhhee---ecceEEecHHH-HhhhhhhhhHHHHHHhhhcccc-cchhhhhh------HHHHH
Confidence 4 3 3444699999999999997 89999999999 9999999999999999999998 89999986 99999
Q ss_pred eehhhhcccccccccchhhhcCchhHHHHHhhhhcccccccCCchhHHHHHhhhhhhhcccc--chhhhhHHHHHHHHHH
Q 000102 1483 WFRLLVGNCRTVSDGLVVEFLGEPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILNNS--LAVREDIHQMYQSLTM 1560 (2239)
Q Consensus 1483 wfr~l~gncrtv~~glv~~~lge~~i~alsr~qr~lpl~~vfppaysifa~v~wr~~~~~~~--~~~red~~qlyqsl~~ 1560 (2239)
|||++||||+++.+|+..++. +++|.+|||||||+.+||||||+|.||++||+|+.|.| -.+.||+|..||+.+|
T Consensus 850 vf~~~v~~~~h~se~~d~~~~---~~f~~~r~~~ml~i~~~fk~~~~~~~~fl~rk~~sn~n~~~~Vs~~~~~e~q~n~~ 926 (1427)
T KOG4522|consen 850 VFRLLVGNCKHVSEGLDLELV---SVFAISRMQRMLPIKLVFKPAYSIIAFFLWRKFVSNSNSNSSVSEDTHREYQSNTM 926 (1427)
T ss_pred HHHHHhcccccCCchhhhHHH---HHHHHHhhhhhhhHHhhhhHHHHHHHHHHccccccccchhhhhhhHhHHHHHhcch
Confidence 999999999999999999887 99999999999999999999999999999999998733 2459999999999999
Q ss_pred HHHHHHhcCCccccccccccccceeeccCCChHHHHHHHhhcCcccccccccccchhhHHhHHHHhccCCCCCcccCCCc
Q 000102 1561 AINDAIRHLPFRDVCLRDCQGFYNLVTADSTDAEFAAMLELNGLDLQLKSMAFVPLRARLFLNAIIDCKMPSSLFKPEDF 1640 (2239)
Q Consensus 1561 ai~d~~~h~pfrdvc~r~~~~~y~l~~ad~~d~efa~~le~~~~d~~~k~~af~plrarlflna~idc~~p~~~~~~~~~ 1640 (2239)
|+.|+|||+|| .+|.+|.||+.++|.|| +|+.+|- |||+|||.+++||.
T Consensus 927 ~l~~vi~~Lp~---------------~ld~~d~~~g~~~e~H~----~ksI~~~--~ar~~l~~l~l~K~---------- 975 (1427)
T KOG4522|consen 927 ALHDVIKHLPF---------------VLDSTDAEFGSVFESHG----LKSIAFA--RARLFLNSLILCKV---------- 975 (1427)
T ss_pred HHHHHHHhccc---------------cccCCCccchhHHHhhc----hHHHHhH--HHHHHHhHHHHHHH----------
Confidence 99999999999 78999999999999999 8898888 99999999999997
Q ss_pred ccccCCccccccccchhhhHHHHHHHHHhhcCCccchhHHHHHHHhhchHHHHHHhhcccchHHHHHH-hcCCCcccccc
Q 000102 1641 NRVSGHTESKSHRAENEAKLLDKLVHVLDSLQPAKFHWQWVELRLLLNEQALIDRLENHEMSLAEAIR-SLSPSPEKAAA 1719 (2239)
Q Consensus 1641 ~~~~~~~~~k~~~~~~~~kl~d~lv~~ld~lqpakfhwqwvelrlll~eqal~ek~~~~~~~l~~a~~-~~sp~~e~~~~ 1719 (2239)
..|..|.|... ||..|+.+++++++|+|||+ +++|||+|.|||++|+|.|.||++ +.+|. |+.+
T Consensus 976 --~~g~~c~~N~~-e~~~K~v~~~~sv~dcl~~s----------~~i~~q~l~~~lenh~mil~d~l~ysTCpt--k~d~ 1040 (1427)
T KOG4522|consen 976 --HEGVSCAKNRH-ENGTKLVDKLVSVLDCLQPS----------LLINEQALAEKLENHDMILTDALRYSTCPT--KPDA 1040 (1427)
T ss_pred --hcCchhhhhhH-HhHHHHHHHHhchhhhcchH----------HHhHHHHHHHHhhhccchhhhhHHhccCCC--cccc
Confidence 36778898833 99999999999999999999 899999999999999999999999 89988 8999
Q ss_pred chhchhhHHHHHHHhhcCCCCcchHHHHHHHhcchhhhhhHhhcceecccccccccchhhhHHHHhhhhccCcccccccc
Q 000102 1720 SENENNFIEIILTRLLVRPDAAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLFGRKTIRQRLVNIAESKGLSTKAQFW 1799 (2239)
Q Consensus 1720 se~e~~f~~iiltrll~rpdaa~l~se~vhl~g~~l~~s~~~~~kw~l~g~d~l~grk~~rq~l~~i~~~k~~~~k~q~~ 1799 (2239)
+|+|+||+ +|||++|||+||||.+|+|++|+. ||+ ||++||.|+|..++|||++|
T Consensus 1041 s~~e~~~~-------------~Pl~~tvvt~~d~s~dD~~~~~~~------Dvv--~k~V~~~l~n~~~~~g~~~~---- 1095 (1427)
T KOG4522|consen 1041 SENEKNFI-------------VPLFSTVVTLFDRSVDDSMLKQAE------DVV--RKTVRQKLINVGESKGLPTK---- 1095 (1427)
T ss_pred ccCccccC-------------CCchhhheeccCCccchhhhHhHH------HHH--HHHHHHHHHHhccccCccch----
Confidence 99999999 899999999999999999999998 998 99999999999999999999
Q ss_pred cccccC-CCCCCCcccc--cCcccccccccccccccccccccccCCCCCCCcccccccccccchhhHHHHHHhhcccccc
Q 000102 1800 KPWGWV-NSGFGPGLNR--GDKKKLEATSLEEGEVVEEGIDSKRHGKGSNPLFDAEGTSIGQQHVTERAFIELVLPCIDQ 1876 (2239)
Q Consensus 1800 kpwgw~-~~~~~~~~~~--~~k~k~~~~s~eegev~~~~~d~kr~~~~~~~~~~~~~~~~~~~~~te~a~~elvlpcid~ 1876 (2239)
|+|+ ++..||++.. +.|+||+.+++||||+.+|- .++|+.|......+.|.. ||||.+++||||||
T Consensus 1096 --~iwk~~~s~~p~~a~~~~k~~~F~i~ei~~~~dl~~~--------~f~q~ld~~s~~v~~qI~-e~~F~~~~l~~~~Q 1164 (1427)
T KOG4522|consen 1096 --WIWKNSSSSDPITANKAGKKRKFEITEIEEGEDLEEV--------LFPQVLDENSPSVGYQIT-ERAFVQLVLPCIDQ 1164 (1427)
T ss_pred --hheecccCCCchhhhhhhhhceEEEEEeccccchhHH--------hhhHHhhccChHHHhcCc-HHHHHHhcCCcccc
Confidence 9999 6777898765 88999999999999999773 799999999999998876 99999999999999
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHhhcCccc--ccccCCCCCcCCCCCCCccccccCCCCCCCCCCCCCCCCCCCHH
Q 000102 1877 SSDDSRNTFANDLIKQLNNIEQQISAVTRGANKL--TGSVPSGIEVPSNKGSNRKSIRGGSPGLARRLAATADPAPPSPA 1954 (2239)
Q Consensus 1877 ss~~~r~~fa~dlikq~~~i~~~i~~~~~~~~k~--~~~~~~g~e~~~nk~~~rk~~~ggsp~~~rr~~~~~~~~~~s~a 1954 (2239)
|+||+|.+|..++|.|+.++||+.+.++..-+-- .|++.+|.+-+++| ||+|+||..... |
T Consensus 1165 s~d~~~s~~vneiv~~~S~r~qrlTs~~~~it~~n~hg~~~~~~qls~l~----------s~sl~kr~~~n~-------a 1227 (1427)
T KOG4522|consen 1165 SSDESRSTFVNEIVRQFSNREQRLTSVTNRITTSNKHGTASSGSQLSSLK----------SPSLAKRSSANT-------A 1227 (1427)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHHhhcc----------CcchhhHHHhHH-------H
Confidence 9999999999999999999999999997655432 89999999999988 899999987765 9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCchhhHHHHHHHHHHHhccceeecccccCCCCCCCccchhhhcccccCCCCCcc
Q 000102 1955 ALRASMSLRLQFLLRLLPLIYTDGEPSGRNMRYLLASVILRLLGSRVVHEDADLSFYPMQSPQSKREVESLPEASSVPSA 2034 (2239)
Q Consensus 1955 alras~~lrlq~l~rllp~i~~d~~~~~r~mr~~las~i~~llg~rvv~eda~~~~~~~~~~~~~~e~~s~~e~~~~~~~ 2034 (2239)
|||++|.+|+||++|+|||||. +|+..+.+|.+|+.|.|+||+|||+||++++.+ -++-.|.||+++|| +
T Consensus 1228 ~L~~~~f~~~~~~~r~~~v~~~--kPs~~~~d~~c~~~~~~~~n~r~~l~~yev~ss----r~~~a~y~sTID~p----a 1297 (1427)
T KOG4522|consen 1228 ALRASMFLRLQFLLRLLPVICG--KPSFKNTDHACASTIVRLLNSRVVLEDYEVCSS----RSELAEYESTIDPP----A 1297 (1427)
T ss_pred HHHHHHHhHHHHHHhhhceeec--CCCCCchHHHHHHhHHhhccchhhhhHHhhhcc----chhhhhhhcccCCh----H
Confidence 9999999999999999998885 588999999999999999999999999997654 22337899999997 6
Q ss_pred cCCchhhHHH-HHHHHHHhhcCCCCCccccCCCCCCCCCCCCCCCcccHHHHHHhhcccccccCchhHHhHhhhcccccc
Q 000102 2035 DFSGESLFDR-LLLVLYGLLSSCQPSWLRPKPAFKSSNNTSKDSSGFDREIAESLQNDLDHMQLPDTVRWRIQAAIPILL 2113 (2239)
Q Consensus 2035 d~~~e~lfdr-ll~vlh~ll~~~~p~wlk~~~~sk~~~~~~r~~~~fd~e~~e~lq~~ld~m~lp~~ir~riqaamp~l~ 2113 (2239)
|.++|.+||+ -|+= |.-||||++||||||+||
T Consensus 1298 ~lss~~~~~pr~ll~-------------------------------------------L~~~q~~sfi~w~~qh~~---- 1330 (1427)
T KOG4522|consen 1298 DLSSEVLFDPRELLG-------------------------------------------LSTMQLPSFIRWRIQHAM---- 1330 (1427)
T ss_pred HhccccccChHHHhC-------------------------------------------CCcccchHHHHHHHHccc----
Confidence 8999999975 3322 234999999999999999
Q ss_pred CCCccccccCCCCcchhhhcccCcccccCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcccCccccccCCCC
Q 000102 2114 PSVRCSLTCQPPSVPVAALASLQPSISVSGASPGNLNLPQRNPVPLARSATNTGKSKPIPLQQDSDMEIDPWTLLEDGAG 2193 (2239)
Q Consensus 2114 ps~~~~~~cqpp~v~~~a~~~lq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~d~~~e~dpwtlledg~~ 2193 (2239)
..+|||.++|..||+..||...++.+ ..++|+.|+.....|..+-|.-...+.+..|-|--..+.
T Consensus 1331 -----dy~~qe~s~~~~~ltl~~~igit~~a------~~neq~~~~I~d~~~~~~~~~fs~~P~q~~~~~nt~~~d---- 1395 (1427)
T KOG4522|consen 1331 -----DYSCQEHSVPPTALTLVQPIGITAAA------GTNEQNSPAISDSGTAAKLKPFSLAPHQQQEADNTDVVD---- 1395 (1427)
T ss_pred -----ccccCcCCCCccchhhhccchhhhhh------hhccccceeeeeccchhhhccccCCchhhhhhccceeec----
Confidence 78999999999999999998887764 255777888888877776666655555555543322322
Q ss_pred CCCCCCCCcccCCCccchhhhhhccccceeeeecccccc
Q 000102 2194 SGPSSSNTAAIGSGDQANLQAASWLKGAIRVRRTDLTYI 2232 (2239)
Q Consensus 2194 ~~~~~s~~~~~~~gd~~nl~a~swlkgavrvrrtdltyi 2232 (2239)
.+.+++.|.+|++|++||||+||||||||||+
T Consensus 1396 -------~~as~s~d~~~f~~Sc~l~~~v~vr~~dl~~~ 1427 (1427)
T KOG4522|consen 1396 -------SNASNSSDMANFRASCWLKGAVRVRRTDLTYV 1427 (1427)
T ss_pred -------ccccccHHHHHhhHhHHHhhhhheeeeccccC
Confidence 44556689999999999999999999999995
|
|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
| >PF12145 Med12-LCEWAV: Eukaryotic Mediator 12 subunit domain; InterPro: IPR021990 This domain is found in eukaryotes, and is typically between 325 and 354 amino acids in length | Back alignment and domain information |
|---|
| >KOG4522 consensus RNA polymerase II transcription mediator [Transcription] | Back alignment and domain information |
|---|
| >PF09497 Med12: Transcription mediator complex subunit Med12; InterPro: IPR019035 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 1e-12
Identities = 89/619 (14%), Positives = 173/619 (27%), Gaps = 171/619 (27%)
Query: 1334 RILRIYITCLCLLKEALGERQSRVF-EIALATEASCALARVFTPGKAARSQFQSSPEAHD 1392
+ LL + E + F E L ++ + T + + E D
Sbjct: 60 AVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 1393 PNANMSNDILNSSSKVASGRTSKVTAAISAL-----VVGAVLHGV-----TSLERMVTVF 1442
N N + +K R AL ++ GV T +
Sbjct: 118 RLYN-DNQVF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------- 166
Query: 1443 RLKEGLDVIQFVRSTKSNSNGSARSIGTFKLDNSIEVHVHWFRLLVGNCRTVSDGLVVEF 1502
+ S +K+ ++ + W L + NC S V+E
Sbjct: 167 -------ALDVCLS--------------YKVQCKMDFKIFW--LNLKNCN--SPETVLEM 201
Query: 1503 LG------EPSIVALSRMQRMLPLSLVFPPAYLIFAFVLWRPFILNNSLAVREDIHQMYQ 1556
L +P+ + S + L + A L + +P+ N L V ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPY--ENCLLVLLNV----- 253
Query: 1557 SLTMAINDAIRHL-PFRDVCLRDCQGFYNLV-TADSTDAEFAAMLELNGLDLQLKSMAFV 1614
+A + F ++ C+ L+ T +F + + L SM
Sbjct: 254 ------QNA-KAWNAF-NL---SCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 1615 PLRARLFLNAIIDCKMPSSLFKPEDFNRVSGHTESKSHRAENEAKLLDKLVHVL--DSLQ 1672
P + L +DC+ P L P E + + +S++
Sbjct: 300 PDEVKSLLLKYLDCR-PQDL--PR------------------EVLTTNPRRLSIIAESIR 338
Query: 1673 PAKFHWQ-WVELRLLLNEQALIDRLENH-EMSLAEAIRSLSPSPEKAAASE----NENNF 1726
W W + D+L E SL L P+ + +
Sbjct: 339 DGLATWDNW--------KHVNCDKLTTIIESSLN----VLEPAEYRKMFDRLSVFPPSAH 386
Query: 1727 I-EIILTRLLVRPDAAPLFSELVHLFGRSLEDSMLLQAKWFLGGHDVLF-------GRKT 1778
I I+L+ + + + + L SL + ++ + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYA 444
Query: 1779 IRQRLVNIAESKGLSTKAQFWKPWGWVNSGFGPGLNRGDK----------KKLEATSLEE 1828
+ + +V+ + P + + P D+ K +E E
Sbjct: 445 LHRSIVD-----------HYNIPKTFDSDDLIP--PYLDQYFYSHIGHHLKNIEHP--ER 489
Query: 1829 GEVVEEG------IDSK-RHGKGSNPLFDAEGTSIGQQHVTERAFIELVLPCIDQSSDDS 1881
+ ++ K RH + + QQ + +I D
Sbjct: 490 MTLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLKFYKPYI------CDNDPKYE 542
Query: 1882 RNTFANDLIKQLNNIEQQI 1900
R N ++ L IE+ +
Sbjct: 543 R--LVNAILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00