Citrus Sinensis ID: 000110
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2163 | 2.2.26 [Sep-21-2011] | |||||||
| P18296 | 1828 | Separin OS=Schizosaccharo | yes | no | 0.204 | 0.241 | 0.272 | 1e-47 | |
| P33144 | 2067 | Separin OS=Emericella nid | yes | no | 0.169 | 0.177 | 0.306 | 9e-46 | |
| Q14674 | 2120 | Separin OS=Homo sapiens G | yes | no | 0.154 | 0.158 | 0.297 | 3e-40 | |
| P60330 | 2118 | Separin OS=Mus musculus G | yes | no | 0.172 | 0.176 | 0.275 | 1e-39 | |
| Q03018 | 1630 | Separin OS=Saccharomyces | yes | no | 0.167 | 0.222 | 0.269 | 1e-31 |
| >sp|P18296|CUT1_SCHPO Separin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 161/591 (27%), Positives = 233/591 (39%), Gaps = 149/591 (25%)
Query: 1597 SIKDLEQFVKDFLLSLPCT-TVICVTLLGGAYTRLLQELLPLPSCVHAWMMLSRFNSINQ 1655
SI D+ F +F+ SLP V+ +T+ + +S+ +
Sbjct: 1355 SIPDVRTFQDNFIDSLPSIWNVVSITINNSGED----------------LFISKIRKGHS 1398
Query: 1656 PIVVLLPVNAVLQEDADYDDDDAITSFRELREIKDCGKNWHCPWGSTIADDVAPAFKLIM 1715
P++ LP LQ D D+ I F + + F++I
Sbjct: 1399 PLIFRLP----LQRHNSRDADEEILVFTKAQ---------------------TELFRIIS 1433
Query: 1716 EDNYLSSRSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWLGPWKYMLLGEWSNCKN 1775
+ N ++ + + WW R LDQ L + L +E SWLG +K + N
Sbjct: 1434 KSNQMAQNGKHYTRREDKETWWKERRHLDQCLQQLLENIEISWLGGFKGIF-----NPHK 1488
Query: 1776 LDT-VHKKLVRDLKCKCKANINESLLRIVLGGLKGAFKGEECIAQLCFKKGCYVGTVGYS 1834
+DT + K + N N V ++ + +G GY
Sbjct: 1489 IDTSLFAKFSSQFQNIIAKNFNMDKKTPV-----------PTLSPEILELFITLGKPGYE 1537
Query: 1835 DNSSCGTSSEASNGVERLSELALQLI---------HKAVDELEDDS-------------- 1871
G E+L E + I H A DE++ D
Sbjct: 1538 -------------GYEQLLEDLIYFILDIFQFRGLHFAYDEIDTDQLSMDLQDALNAYFN 1584
Query: 1872 -----GHREPTILVLDCEVQMLPWENIPILRNHEVYRMPSVGSIAATLERIHRHEQLVKG 1926
+R T+LVLD V PWE++P L V R+PS+ + L I +V G
Sbjct: 1585 NYVSEENRSHTVLVLDKSVHQFPWESLPCLNRQSVSRVPSL----SILRDILSQSFVVNG 1640
Query: 1927 LLATFPLIDPLDAFYLLNPSGDLSETQLLFEDWFRDQNLVGKAGSAPTAEELTLALKSHD 1986
+ + Y+LNPS DL TQ +FE + G S P+ + L +D
Sbjct: 1641 ---EYVEVRKEAGSYILNPSLDLKHTQEMFEHKLVEGGWKGLIASQPSNRDFIKMLSGND 1697
Query: 1987 LFIYLGHGSGSQYISRHDLLKLEKCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLAGSPV 2046
F+Y GHG G QY + +DL L++CA T LMGCSSG+L G + P GTPL YL AG P
Sbjct: 1698 FFLYFGHGGGEQYTTSYDLATLKRCAVTILMGCSSGALYECGSFEPWGTPLDYLSAGCPT 1757
Query: 2047 IVANLWDVTDKDIDRFGKTMLDAWLRERSSVPVGCDQCSSVQDEAKNGRGKVNKKRMSRK 2106
+VANLWDVTDKDIDRF ML++W +
Sbjct: 1758 LVANLWDVTDKDIDRFSLKMLESW-------------------------------GLFEN 1786
Query: 2107 KLPETSDISLCNNGCDHRPKLGSFMGQAREACKLPFLIGAAPVCYGVPTGI 2157
K P + S+C + + ++R C L +L GAAPV YG+P I
Sbjct: 1787 KAPFVNSTSIC-----------TAVSESRSCCHLRYLNGAAPVIYGIPAYI 1826
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Caspase-like protease, which plays a central role in the chromosome segregation by cleaving the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, it is inactivated by securin/cut2 protein. It is also required for pointed nuclear formation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 4EC: 9 |
| >sp|P33144|BIMB_EMENI Separin OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bimB PE=3 SV=2 | Back alignment and function description |
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| >sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 | Back alignment and function description |
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| >sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q03018|ESP1_YEAST Separin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ESP1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2163 | ||||||
| 255576219 | 2153 | separase, putative [Ricinus communis] gi | 0.975 | 0.980 | 0.541 | 0.0 | |
| 359486090 | 2197 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.954 | 0.537 | 0.0 | |
| 298204605 | 2158 | unnamed protein product [Vitis vinifera] | 0.945 | 0.947 | 0.538 | 0.0 | |
| 356557511 | 2185 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.958 | 0.484 | 0.0 | |
| 356528783 | 2142 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.978 | 0.486 | 0.0 | |
| 449511406 | 2165 | PREDICTED: uncharacterized LOC101203087 | 0.958 | 0.957 | 0.461 | 0.0 | |
| 449453045 | 2142 | PREDICTED: uncharacterized protein LOC10 | 0.947 | 0.957 | 0.458 | 0.0 | |
| 357445639 | 2216 | Separin [Medicago truncatula] gi|3554821 | 0.967 | 0.944 | 0.449 | 0.0 | |
| 79482708 | 2180 | separase [Arabidopsis thaliana] gi|57019 | 0.964 | 0.956 | 0.450 | 0.0 | |
| 334186825 | 2177 | separase [Arabidopsis thaliana] gi|33265 | 0.963 | 0.956 | 0.449 | 0.0 |
| >gi|255576219|ref|XP_002529003.1| separase, putative [Ricinus communis] gi|223531543|gb|EEF33373.1| separase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2241 bits (5808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1193/2205 (54%), Positives = 1542/2205 (69%), Gaps = 94/2205 (4%)
Query: 1 MASASTESSLLAKLEASDSTPIYSLFADYLRPFSDLQNESTKPNPKSKPKAKPNQNLIRP 60
MAS + +S L++KLE+S ST IYS F++YL PF D +N + +Q L R
Sbjct: 1 MASLTEDSDLISKLESSTSTHIYSDFSNYLIPFDDFKN------------SDKSQTLTRS 48
Query: 61 LAKKFLTFLNNSITILPKRLSNL-QCKDDHQTLVDELYDTYRLCLNCLELISSQLACKPY 119
LAK+FL FLN S++I+PKRLS+L + KD + +V L DTYRLCL+CLEL++SQL+CK Y
Sbjct: 49 LAKQFLPFLNRSLSIIPKRLSDLSKSKDIPKEIVSGLLDTYRLCLDCLELVASQLSCKSY 108
Query: 120 TIQLQRVRFVCCLVASGKGEDAVREGLRVLETLRRMDF----------------EGKCGD 163
T+ +QR+R V CL ++A EG RVL+ ++ +D + D
Sbjct: 109 TVSIQRLRLVYCLEQLRLYKEAENEGFRVLQKIKGLDVIKKKKKEKDKFLPVLAVKENVD 168
Query: 164 SEFGKVFVEAVAAIVQCAAVGRSKDCEVYRRVLGLFQEAKCWFRVLDANAHAKLHRVLVS 223
SE K+ +E V IV+C A+ +SKDCE YRRV+GL E + WFR LDAN H KLHRVLV+
Sbjct: 169 SELAKLVIEVVVCIVKCVALEQSKDCEDYRRVIGLVDEVRPWFRELDANTHEKLHRVLVT 228
Query: 224 YLGKCTQHLVEEIMCFNRDLVREFCEATLTEYAKSSMKDQFYKFCRRLCFTLFSLQESKP 283
YLGKCT LV E+ F+ +V FC + EY KSS+KDQ YKF RR+C +LF Q P
Sbjct: 229 YLGKCTLFLVGELSNFDGGIVHSFCVTAVDEYIKSSLKDQIYKFARRICSSLFLHQYDIP 288
Query: 284 SLIIEIILCVLDSIACQCKQVESDNTGIELVELVSYCANKCRTAGTIFCSTVAGHLNHIG 343
+I+I+ +LDS+A +CK VE N IE V+LVSYCA+KCRTA T FCSTV HLN+I
Sbjct: 289 QFVIDILKSILDSLASRCK-VEDQNLEIEFVQLVSYCADKCRTASTNFCSTVEAHLNNIA 347
Query: 344 GHFPQVITPVDLILRLYATGLYLTNYEVKFRGGDLTSTRAAKDEFVLSCLPDDGDQLHNL 403
F Q P+D ILRLYA GL +T+ V R D TS++++KDE + L G +L +
Sbjct: 348 DVFCQAREPMDKILRLYAIGLTITDSVVNSRVDDATSSKSSKDEPAFNSLLTHGARLSDF 407
Query: 404 ASLLSALGSYFSFCCAKNFVS-----------SKLVSDIEAAYISPQLCSIQDAFYQFFD 452
A LL +L S+F C +N VS ++V++ A IS L SIQ+AF +FFD
Sbjct: 408 APLLGSLQSFFYVGCEENCVSCGVEYKDSDKKKQIVTENGVASISTILFSIQEAFDKFFD 467
Query: 453 VFF-SQSLASERKRDGLDDNKRILSVTVAAFILSITMDRKLKKTVLLIKHIIANEWIQPE 511
+F QS ASE + D D+N ILSV VAAF +SI KL+K+V ++KHI+ ++WIQP+
Sbjct: 468 IFLLFQSTASEGEGDEFDENI-ILSVAVAAFTISIRTKLKLQKSVHVMKHILDSKWIQPQ 526
Query: 512 GLKYLYASLYNIGVLLYRNKQVKEASKALKLCCRAAWACVARLSQMFACNCNSDGFHGGM 571
GLKYL++SLYN+G+ LYRNKQV EASKALKL CRA+W C QM+ N G +
Sbjct: 527 GLKYLFSSLYNLGIHLYRNKQVNEASKALKLSCRASWTCAVLFCQMYMNKSN-----GDL 581
Query: 572 TEGAIVDFVNEACTRSAFLLDVLHHRGSQKMEKVIVDSLENWSIAAILFKTLPGPLPLVK 631
+E I DF+ EACTR+AFLLD+++ GS K++K+IV+ LENWS+A LF++LPGP+PLVK
Sbjct: 582 SEDVISDFITEACTRTAFLLDIVYQCGSLKLKKIIVNGLENWSVAEDLFRSLPGPMPLVK 641
Query: 632 QWVKIECKRRKNLDVEDDAPTLYYLLSSSGKASERTIGIILEQELHSYEELYPLSPELCH 691
QWVKIECKR KNLDV+D+A TLY+LLSSS K S+RTIG IL+QEL++YEE+ + PELC
Sbjct: 642 QWVKIECKRIKNLDVDDEASTLYHLLSSSKKLSKRTIGKILQQELNAYEEMDIMYPELCQ 701
Query: 692 RMQMKISTILLQSVYNSRNSYFQRSGILLRKGRALRARGTEGLKDCIQCLSEAICVMNDI 751
RMQ++I ILLQ VY ++S +RS +LLRKGRALRA G GL+DCIQCL++AI V+N
Sbjct: 702 RMQLEIIDILLQDVYVMQDSCLERSRLLLRKGRALRAFGFNGLRDCIQCLTDAISVINAG 761
Query: 752 SGDMSQHETLHCHQLAVAYCLRALCTQEAEPNSKQVIEDIGAALNLWLSVSICFESERCN 811
+L QLA+A+CLR LC QEAEPNSKQV++D+ AA+++WLS+ I S+ N
Sbjct: 762 KHGGGIPTSL---QLAMAHCLRGLCIQEAEPNSKQVLQDVQAAISIWLSIPI---SDDGN 815
Query: 812 MVSENTMLLLYNVVDLLSLKGFIEFHNNIYKLMLRLFKCKNVPLEKYLSILWESRRLSHA 871
++S + ++LLYN+VDLL+ KG +EFH N+YKLM+R+ + KNVPLEK+LSILWESRRLSHA
Sbjct: 816 LLSGSGLILLYNIVDLLAAKGSMEFHYNVYKLMIRILELKNVPLEKFLSILWESRRLSHA 875
Query: 872 LCISPVNDAFLVNLAEQCGELSKSIEFWMGCLQGSQPLLVGFQQSLLFLFANSSHGCYIS 931
LCISPV D L+NL+ GE KS FW+ CL+ S PLLVGFQQ+ +LF +
Sbjct: 876 LCISPVYDELLMNLSRDYGEQFKSTGFWIHCLKASPPLLVGFQQNFSYLFTSVPCSSGDH 935
Query: 932 KSSVQPCITIHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIE 991
++ Q IT+ DVK+AA EL+S PVT S+F G LYYDLCE+LIA+G + EALSYA E
Sbjct: 936 ETPFQSDITVDDVKQAALELVSRAPVTSCSIFFAGCLYYDLCEKLIASGHIFEALSYAKE 995
Query: 992 AHRLRTQLFQEKFSYSVENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWN 1051
AHRLRT+LFQEKF+YSVE +++ + GD SQKL + + + + S+A ++W D S +
Sbjct: 996 AHRLRTKLFQEKFTYSVEQQTEKHIEVGDHSQKLTYAIRNLRVNKSIACKLWYSDGKSSD 1055
Query: 1052 VDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSS 1111
+ YLSPW +LQCYLES LQVG +HE+VGNG EAE FLLWGK ISC QSLP F+VAFSS
Sbjct: 1056 EEVYYLSPWKILQCYLESTLQVGTVHEIVGNGGEAETFLLWGKDISCQQSLPLFVVAFSS 1115
Query: 1112 ILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSYSGC 1171
+LGK+YRKK+ WD ++KEL++AKQ L +S SCLKCRLILEVTVDQQL DLSR+ C
Sbjct: 1116 VLGKVYRKKRSWDLSQKELQSAKQNLESRSSAFSCLKCRLILEVTVDQQLADLSRN---C 1172
Query: 1172 --DDRGNTLIERLSNAEKLYKSALDKLNLSEWKNSISLPEEARSESILPKKPSIQNVEHG 1229
D N +ERLS+AE LYKS+LDKLNLSEWKNS S PE+ V+ G
Sbjct: 1173 IFDAARNVSLERLSHAESLYKSSLDKLNLSEWKNSTSFPEK---------------VDDG 1217
Query: 1230 AGNTFVHSTLHQPDTVE-LTARNQLSAKVGGTKCRKTKNALKSLVNDQNLDLDPNSRITR 1288
N S +PD ++ ++ R+ +AK+ G K R+TK + KS + +Q+ + N+R+TR
Sbjct: 1218 TTNKCACSDTSRPDMMDFVSTRSGPNAKMKGRKNRQTKPSAKSSLKEQSSMTECNTRLTR 1277
Query: 1289 SKYRSSQNQSVNNCVEERSGVSKHAKNNNLSDLPDILSQGKSVLEAK-SFVDTGYQAACI 1347
S+YRSSQNQ+VN+ EE+ G+ KH + + DL D SQ K +LE + S VD G + CI
Sbjct: 1278 SRYRSSQNQNVNSSEEEQHGLFKHPNDYSACDLNDANSQRKLLLETRSSTVDFGCEVVCI 1337
Query: 1348 CNKMKCWQCLPGEVIESGLLDNLLHVKWEFTRRRLSLRVLAGIGKCFGNRDQTHEAHKIV 1407
CNK+KCW CL EV ESGLL N +++KWE RRRLSLR+L+ GKC + HEAH+I+
Sbjct: 1338 CNKLKCWFCLAMEVKESGLLMNFINMKWELVRRRLSLRILSSRGKCLQIHGEIHEAHEII 1397
Query: 1408 FQSVSVLLCRNSFSHTDSSLPVTVLLDLIGKEYSEDVFAVERAGVLYNLCWFSLKAYLII 1467
QS SVL+ RN F+ + S++ T LLDL+G EYS DVFAVERA +L+++CWFSLK+Y
Sbjct: 1398 LQSASVLVSRNPFTQSYSAVSHTFLLDLVGTEYSGDVFAVERAALLFDICWFSLKSYHSK 1457
Query: 1468 DVMKIG---FLPNFSGFLSLLILSFSPFSFAYYPAPRMMNLLAVSKLLAVIYVLSSTSKL 1524
D I S L+L+F P++ VS+LL+ I+ LSS+S+
Sbjct: 1458 DNRTICCDLSHVKLQKVASWLMLAF----VLCREVPKLFQ--KVSRLLSGIFTLSSSSEH 1511
Query: 1525 FSLSSSSKVLSESHWASFFHQASLGTHLNYKFLSNMSWRFKAQDIVDTEASHVTGSSCIK 1584
FSL S KVLSE HWAS+FHQASLGTH +F S+++ + KA+ + D + S VTG++C
Sbjct: 1512 FSLPSYCKVLSEGHWASYFHQASLGTHHTCQFFSSITQKHKAEHLEDDQGSQVTGATCKG 1571
Query: 1585 TETGKLIRISPESIKDLEQFVKDFLLSLPCTTVICVTLLGGAYTRLLQELLPLPSCVHAW 1644
ET L ++P+S++D+E FV DF SLP T V+C++L+G Y LLQELL PS V AW
Sbjct: 1572 AETCNLPSLAPKSLQDMEHFVTDFFSSLPSTMVVCISLIGDPYATLLQELLMYPSRVCAW 1631
Query: 1645 MMLSRFNSINQPIVVLLPVNAVLQEDADYDDDDAITSFRELREIKDCGKNWHCPWGSTIA 1704
M+LSR NS + PI++LLPV+ + +E + DDD E E D K+WHCPWG T+
Sbjct: 1632 MLLSRLNSKSHPIMMLLPVDLISEETS--DDDAPNPGSEEFPESNDLDKHWHCPWGFTVI 1689
Query: 1705 DDVAPAFKLIMEDNYLSSR-SSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWLGPWK 1763
D+V+PAFKLI+E+NYLSS D+ R+LWW RR KLD +L + LRK+ED WLGPW+
Sbjct: 1690 DEVSPAFKLILEENYLSSSIFPLEDTKENRTLWWMRRKKLDFQLGKLLRKMEDLWLGPWR 1749
Query: 1764 YMLLGEWSNCKNLDTVHKKLVRDLKCKCKANINESLLRIVLGGLKGAFKGEECIAQLCF- 1822
+LLGE S+ K+LD+V KKL+R+LK KCK ++NES L+++LGG K E CI + F
Sbjct: 1750 CVLLGELSDSKHLDSVQKKLMRNLKSKCKVDVNESFLKVILGGGKSVLDAEACIYDILFL 1809
Query: 1823 KKGCYVGTVGYSDNSSCGTSSEASNGVERLSELALQLIHKAVDELEDDSGHREPTILVLD 1882
KKGC++G V YSD +C ++ GV++L LA+QLIH+AV+ELE D REP ILVLD
Sbjct: 1810 KKGCFIGKVIYSDEETCKILTK-EFGVQKLPNLAIQLIHEAVNELEVDIVTREPLILVLD 1868
Query: 1883 CEVQMLPWENIPILRNHEVYRMPSVGSIAATLERIHRHEQLVKGLLATFPLIDPLDAFYL 1942
EVQMLPWEN+P+LRN EVYRMPSV SI +TL+R +++ V + + FP IDPLDAFYL
Sbjct: 1869 FEVQMLPWENLPVLRNQEVYRMPSVASICSTLDRSCNNQEQVGRIFSAFPFIDPLDAFYL 1928
Query: 1943 LNPSGDLSETQLLFEDWFRDQNLVGKAGSAPTAEELTLALKSHDLFIYLGHGSGSQYISR 2002
LNPSGDLS TQ+ FE+WFRDQNL GKAG APTAEELT ALK+HDLF+Y GHGSG+QYIS+
Sbjct: 1929 LNPSGDLSSTQVEFENWFRDQNLEGKAGCAPTAEELTSALKNHDLFLYFGHGSGAQYISQ 1988
Query: 2003 HDLLKLEKCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLAGSPVIVANLWDVTDKDIDRF 2062
++ KLE CAAT LMGCSSG+LSLNG YIP GTPLSYLLAGSPVIVANLW+VTDKDIDRF
Sbjct: 1989 QEIQKLENCAATLLMGCSSGALSLNGSYIPHGTPLSYLLAGSPVIVANLWEVTDKDIDRF 2048
Query: 2063 GKTMLDAWLRERSSVPVGCDQCSSVQDEAK----NGRGKVNKKRMSRKKLPETSDISLCN 2118
GK MLDAWL+ERS C QC+ + +E + R KKR+ +KK PET D
Sbjct: 2049 GKVMLDAWLKERSIASSDCIQCNLLAEEFEAMNLKDRKVATKKRVQKKKEPETCDGDALK 2108
Query: 2119 NGCDHRPKLGSFMGQAREACKLPFLIGAAPVCYGVPTGIRRKPSL 2163
N C+HRPK+GSFM QAREAC+LP+LIGA+PVCYGVPTGIRRK L
Sbjct: 2109 NSCNHRPKIGSFMSQAREACRLPYLIGASPVCYGVPTGIRRKKDL 2153
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486090|ref|XP_002273874.2| PREDICTED: uncharacterized protein LOC100259948 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|298204605|emb|CBI23880.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356557511|ref|XP_003547059.1| PREDICTED: uncharacterized protein LOC100805306 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356528783|ref|XP_003532977.1| PREDICTED: uncharacterized protein LOC100791010 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449511406|ref|XP_004163947.1| PREDICTED: uncharacterized LOC101203087 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449453045|ref|XP_004144269.1| PREDICTED: uncharacterized protein LOC101203087 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357445639|ref|XP_003593097.1| Separin [Medicago truncatula] gi|355482145|gb|AES63348.1| Separin [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|79482708|ref|NP_194028.2| separase [Arabidopsis thaliana] gi|57019012|gb|AAW32909.1| separase [Arabidopsis thaliana] gi|332659286|gb|AEE84686.1| separase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334186825|ref|NP_001190804.1| separase [Arabidopsis thaliana] gi|332659287|gb|AEE84687.1| separase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2163 | ||||||
| TAIR|locus:2127238 | 2180 | ESP "homolog of separase" [Ara | 0.413 | 0.410 | 0.476 | 0.0 | |
| ZFIN|ZDB-GENE-030131-5188 | 2182 | espl1 "extra spindle poles lik | 0.095 | 0.094 | 0.374 | 3.9e-33 | |
| POMBASE|SPCC5E4.04 | 1828 | cut1 "separase/separin" [Schiz | 0.166 | 0.197 | 0.318 | 8.3e-33 | |
| ASPGD|ASPL0000075845 | 2067 | bimB [Emericella nidulans (tax | 0.148 | 0.155 | 0.316 | 3.8e-32 | |
| DICTYBASE|DDB_G0290325 | 2444 | espl1 "separase" [Dictyosteliu | 0.094 | 0.083 | 0.350 | 1.3e-31 | |
| UNIPROTKB|F1MW01 | 2109 | ESPL1 "Uncharacterized protein | 0.100 | 0.103 | 0.352 | 7.1e-31 | |
| TAIR|locus:2179073 | 286 | AT5G28550 "AT5G28550" [Arabido | 0.077 | 0.587 | 0.437 | 2.9e-30 | |
| RGD|1306266 | 2105 | Espl1 "extra spindle pole bodi | 0.101 | 0.104 | 0.336 | 1.2e-29 | |
| MGI|MGI:2146156 | 2118 | Espl1 "extra spindle poles-lik | 0.098 | 0.100 | 0.330 | 2.5e-28 | |
| UNIPROTKB|E2RBD6 | 2108 | ESPL1 "Uncharacterized protein | 0.101 | 0.104 | 0.344 | 4e-28 |
| TAIR|locus:2127238 ESP "homolog of separase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2060 (730.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 445/934 (47%), Positives = 586/934 (62%)
Query: 1248 TARNQLSAKV--GGTKCRKTKNALKS-LVNDQNLDLDPNSRITRSKYRSSQNQSVNNCVE 1304
+++ +LS K G R+ A K+ L DQ+L +P SR+TRS S + Q C +
Sbjct: 1259 SSKTKLSIKEPPGNRGSRRGGRANKTCLSKDQDLISEPTSRLTRSMRHSLREQ----C-Q 1313
Query: 1305 ERSGVSKH-AKNNNLSDLPDILSQGKSVLEAKSFVDTGYQAACICNKMKCWQCLPGEVIE 1363
RS V + +K NL D + S+G+ VL S G+ CIC K K QCL EV E
Sbjct: 1314 NRSNVPEVVSKKPNLCDR-SVGSRGERVLLDTSNALPGF---CICYKEKRQQCLSEEVTE 1369
Query: 1364 SGLLDNLLHVKWEFTRRRLSLRVLAGIGKCFGNRDQTHEAHKIVFQSVSVLLCRNSFSHT 1423
SG L+NL+ +KWE R+L+ +L +GKC G+ + H AH+ + S+SVL SH
Sbjct: 1370 SGSLNNLVSLKWELCHRKLASSILVSLGKCLGDSGRIHLAHEALLHSISVLFKSTWSSHN 1429
Query: 1424 DSSLPVTVLLDLIGKEYSEDVFAVERAGVLYNLCWFSLKAYLIIDVMKIGFLPNXXXXXX 1483
S V+ LL+ IGKE + DVFAV+RA +LYNLCW +L+ Y I
Sbjct: 1430 QPS--VSQLLEFIGKEVTRDVFAVDRAIILYNLCWLNLRNYHCRKSRSICC----DLFHI 1483
Query: 1484 XXXXXXXXXXXAYYPAPRMMNLLA-VSKLLAVIYVXXXXXXXXXXXXXXXXXXXXHWASF 1542
A+ + + L VS+LLA +Y+ HW SF
Sbjct: 1484 PFTKLVSWLMLAFVLSGEVPILFQKVSRLLASLYLLSSSNSEFTFESDGNELSASHWVSF 1543
Query: 1543 FHQASLGTHLNYKFLSNMSWRFKAQDIVDTEASHVTGSSCIKTETGKLIRISPESIKDLE 1602
FHQASLGTHL+Y F+SN+S + K+Q + D E + T SSC+ E L R++P+ +DL
Sbjct: 1544 FHQASLGTHLSYHFISNLSQKHKSQCLSDKECTEATCSSCMVPEDLDLPRLAPDRTQDLV 1603
Query: 1603 QFVKDFLLSLPCTTVICVTLLGGAYTRLLQELLPLPSCVHAWMMLSRFNSINQPIVVLLP 1662
QF K+F ++LP +T+IC++LLGGA +LLQEL+ + S V AW+++SR N +QP+ LLP
Sbjct: 1604 QFAKEFFINLPSSTIICISLLGGALNQLLQELMHIRSPVCAWVLISRLNPESQPVATLLP 1663
Query: 1663 VNAVLQEXXXXXXXXXITSFRELREIKDCGKNWHCPWGSTIADDVAPAFKLIMEDNYLSS 1722
V++++++ T +++ +K G W CPWG+T+ D+VAPAFK I+E+++ SS
Sbjct: 1664 VDSIVEDMSDDSANLSSTEATQVKSLK--GP-WLCPWGTTVVDEVAPAFKSILEESHSSS 1720
Query: 1723 RSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWLGPWKYMLLGEWSNCKNLDTVHKK 1782
++ D++ R LWW +R KL+ RL FLR LE SWLGPW+ +LLGEWSN K D+ KK
Sbjct: 1721 STTEEDTIESRGLWWKKRKKLNHRLGIFLRNLEASWLGPWRCLLLGEWSNYKLPDSAQKK 1780
Query: 1783 LVRDLKCKCKANINESLLRIVLGGLKGAFKGEECIAQLCFKKGCYVGTVGYS-DNSSCGT 1841
LV DLK KCK +NE LL+++LGG FKGE C+AQL + GCYVG GY + SC T
Sbjct: 1781 LVNDLKSKCKMEVNEMLLKVILGGGTDNFKGEACVAQLSLRNGCYVGRGGYLYEEDSCKT 1840
Query: 1842 SSEASNGVERLSELALQLIHKAVDELEDDSGH--REPTILVLDCEVQMLPWENIPILRNH 1899
+ ASN E ELAL+LIH A +L GH REP ILVLD EVQMLPWENIPILR
Sbjct: 1841 PTAASNISESRHELALKLIHDAASKLGQQDGHENREPIILVLDPEVQMLPWENIPILRKQ 1900
Query: 1900 EVYRMPSVGSIAATLERIHRHEQLVKGLLATFPLIDPLDAFYLLNPSGDLSETQLLFEDW 1959
EVYRMPSVG I+A L++ + K +A+FPLIDPLD+FYLLNP GDL++TQ+ FE W
Sbjct: 1901 EVYRMPSVGCISAVLKKRSLQGEPAKSHVASFPLIDPLDSFYLLNPGGDLTDTQVTFESW 1960
Query: 1960 FRDQNLVGKAGSAPTAEELTLALKSHDLFIYLGHGSGSQYISRHDLLKLEKCAATFLMXX 2019
FRDQN GKAGS P+A ELT AL++HDLF+Y GHGSG+QYI R ++ KL+ C+ATFLM
Sbjct: 1961 FRDQNFEGKAGSEPSAIELTEALETHDLFLYFGHGSGAQYIPRREIEKLDNCSATFLMGC 2020
Query: 2020 XXXXXXXXXXYIPQGTPLSYLLAGSPVIVANLWDVTDKDIDRFGKTMLDAWLRERS--SV 2077
YIPQG PLSYLL GSP IVA LWDVTD+DIDRFGK +L+AWL+ERS S
Sbjct: 2021 SSGSLWLKGCYIPQGVPLSYLLGGSPAIVATLWDVTDRDIDRFGKALLEAWLQERSDSSS 2080
Query: 2078 PVGCDQCSSVQDE--AKNGRG-KVNKKRMSRKKLPETSDIS-----LCNNGCDHRPKLGS 2129
GC QC S+ ++ A +G K ++K SR K P SD+ CN+ HR K+GS
Sbjct: 2081 EGGCSQCESLANDLAAMTLKGTKRSRKPSSRNK-PAQSDVDGSGKIECNH--KHRRKIGS 2137
Query: 2130 FMGQAREACKLPFLIGAAPVCYGVPTGIRRKPSL 2163
F+ AR+AC L +LIGAAPVCYGVPTGI RK +
Sbjct: 2138 FIAAARDACNLQYLIGAAPVCYGVPTGITRKKGI 2171
|
|
| ZFIN|ZDB-GENE-030131-5188 espl1 "extra spindle poles like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPCC5E4.04 cut1 "separase/separin" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000075845 bimB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290325 espl1 "separase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MW01 ESPL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2179073 AT5G28550 "AT5G28550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1306266 Espl1 "extra spindle pole bodies homolog 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2146156 Espl1 "extra spindle poles-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RBD6 ESPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.22 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.4.22.49 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2163 | |||
| pfam03568 | 382 | pfam03568, Peptidase_C50, Peptidase family C50 | 5e-90 | |
| COG5155 | 1622 | COG5155, ESP1, Separase, a protease involved in si | 2e-43 |
| >gnl|CDD|217618 pfam03568, Peptidase_C50, Peptidase family C50 | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 5e-90
Identities = 133/427 (31%), Positives = 195/427 (45%), Gaps = 62/427 (14%)
Query: 1643 AWMMLSRFNSINQPIVVLLPVNAVLQEDADYDDDDAITSFRELREIKDCGKNWHCPWGST 1702
++LSR + PI++ LP++ D D
Sbjct: 8 KTLLLSRLSPDRSPIILRLPLDRHNSRDLDE----------------------------- 38
Query: 1703 IADDVAPAFKLIMEDNYLSSRSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWLGPW 1762
+ F+ I+E++ S + + WW R LD+RL + L +E+SWLGP+
Sbjct: 39 --STLLDEFRRIIEEDNESVTTKN-KDKEDKRKWWKERYALDRRLKKLLANIEESWLGPF 95
Query: 1763 KYMLLG----EWSNCKNLDTVHKKLVRDLKCKCKANINESLLRIVLG-GLKGAFKGEECI 1817
K +LL + S K + L L + ++ LL + LG +G E +
Sbjct: 96 KGLLLPKRYDKKSFEKFASAFYNILDNGLPSRKWLTVDRVLLELFLGLDYEGYLSRLEDL 155
Query: 1818 AQLCFKKGCYVGTVGYSDNSSCGTSSEASNGVERLSELALQLIHKAVDELEDDSGH---- 1873
Y D E + E +L L+ +AV++ +D
Sbjct: 156 --------------KYFDLDILRFEGEENAYDEIDLQLLHVLLKEAVNKYNEDDSIKPSK 201
Query: 1874 REPTILVLDCEVQMLPWENIPILRNHEVYRMPSVGSIAATLERIHRHEQLVKGLLATFPL 1933
R TILVLD +Q PWE++PIL+ V R+PS+ S+ + L+R +
Sbjct: 202 RFHTILVLDKSLQQFPWESLPILQEQSVSRVPSLHSLFSLLKRRKSQIKPGI------VT 255
Query: 1934 IDPLDAFYLLNPSGDLSETQLLFEDWFRDQNLV-GKAGSAPTAEELTLALKSHDLFIYLG 1992
++ FY+LNP GDL TQ F +F + N G GS P+ EE+ AL DLF+Y G
Sbjct: 256 VNDKRGFYVLNPDGDLPRTQERFRSFFENWNGWKGVVGSVPSEEEIVKALTKSDLFLYFG 315
Query: 1993 HGSGSQYISRHDLLKLEKCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLAGSPVIVANLW 2052
HGSG QY+S + +L+ CA +FL GCSS +L G + P G L YL AG P++V NLW
Sbjct: 316 HGSGEQYVSGSTIKRLDCCAVSFLFGCSSAALLEKGLFEPYGAILKYLSAGCPMVVGNLW 375
Query: 2053 DVTDKDI 2059
DVTDKDI
Sbjct: 376 DVTDKDI 382
|
Length = 382 |
| >gnl|CDD|227484 COG5155, ESP1, Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2163 | |||
| COG5155 | 1622 | ESP1 Separase, a protease involved in sister chrom | 100.0 | |
| PF03568 | 383 | Peptidase_C50: Peptidase family C50; InterPro: IPR | 100.0 | |
| KOG1849 | 1319 | consensus Regulator of spindle pole body duplicati | 100.0 | |
| PF12770 | 287 | CHAT: CHAT domain | 99.34 | |
| KOG1849 | 1319 | consensus Regulator of spindle pole body duplicati | 99.1 | |
| PF01364 | 378 | Peptidase_C25: Peptidase family C25 This family be | 84.42 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 81.84 |
| >COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-89 Score=828.71 Aligned_cols=450 Identities=26% Similarity=0.421 Sum_probs=370.9
Q ss_pred HHHHHHHccCCCc-cEEEEEeeccchhhhhhhccCCCccccceEEEEeecCCCCCEEEEecCCCccccCCCCCCcccchh
Q 000110 1603 QFVKDFLLSLPCT-TVICVTLLGGAYTRLLQELLPLPSCVHAWMMLSRFNSINQPIVVLLPVNAVLQEDADYDDDDAITS 1681 (2163)
Q Consensus 1603 ~F~kdyid~LP~~-tVIsISL~~~~~~~ll~el~~~P~~~~awLlISRl~~g~~P~vlRLPL~R~~srd~Dee~~sf~~g 1681 (2163)
+|+..+.|.+|+. ++|+|++.-+. ++ ++|||+++++.|.++||||-|+++||.||+.+.|
T Consensus 1155 r~~~~~~ds~~s~ln~v~iti~nc~-----~~-----------L~vsKi~~~h~p~~~RlPliR~NSrDldE~il~f--- 1215 (1622)
T COG5155 1155 RLNRGVEDSCKSRLNFVAITILNCT-----GK-----------LVVSKIGGVHGPTHLRLPLIRSNSRDLDEMILPF--- 1215 (1622)
T ss_pred EeccchhhhcccccceEEEEEeccc-----cc-----------eeeeeccCcCCCccccCccccccccchhhhhccH---
Confidence 3888999999986 89999997762 23 5999999999999999999999999998754442
Q ss_pred hhhhhhhhcCCCCCCCCCCcchHhhHHHHHHHHHHhhhhc-c-cCCCCCChhhHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000110 1682 FRELREIKDCGKNWHCPWGSTIADDVAPAFKLIMEDNYLS-S-RSSYGDSLGQRSLWWNRRTKLDQRLCEFLRKLEDSWL 1759 (2163)
Q Consensus 1682 ~~e~~ei~~~~k~w~cpwGytvvDdVa~eF~~IIeEN~~S-t-ss~~~~TkedRk~WWk~R~aLD~RLk~LL~nIE~~WL 1759 (2163)
.+...++..||.++++. . .....+++|+|+.||.+|++||++|+.|++|||..|+
T Consensus 1216 -----------------------~~A~~el~~Iin~snq~~a~~~~~~~~RE~rkTWW~eR~~Ld~~~qqll~nieisw~ 1272 (1622)
T COG5155 1216 -----------------------HVAVNELKVIINRSNQNLALKDEMSNLREIRKTWWLERFALDRPSQQLLDNIEISWR 1272 (1622)
T ss_pred -----------------------HHHHHHHHHHHhhhhhhHHhhcchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22345778899887663 2 2367789999999999999999999999999999999
Q ss_pred hcccccccCccCCcchHHHHHHHHHHhhhhc-------cCcccChhHHHHHHCCCCCCCchHHHHHHHhhc-cC--ccc-
Q 000110 1760 GPWKYMLLGEWSNCKNLDTVHKKLVRDLKCK-------CKANINESLLRIVLGGLKGAFKGEECIAQLCFK-KG--CYV- 1828 (2163)
Q Consensus 1760 GgfKGLLlg~~sd~~~le~~~k~Lv~~L~Sk-------~k~~ld~~LLkliLg~~~~~~d~ee~L~dLl~~-~~--~y~- 1828 (2163)
||++|+|+|+..|..+++++.+.+.+.++.. ....+-+.++++++...+...+.++.+.||+++ .| .|.
T Consensus 1273 ~G~~gvfsp~~ID~SLf~kf~~~F~~I~~~Nf~~~K~~~np~l~~~viELFl~L~P~~~~~~~~leDliyf~LDi~~f~g 1352 (1622)
T COG5155 1273 LGRYGVFSPYCIDGSLFIKFFKGFIRIDKDNFRGAKTRMNPILARWVIELFLKLNPQEIDSRDILEDLIYFGLDIARFWG 1352 (1622)
T ss_pred cccceecchhhcchHHHHHHHHHHHHHHHhhCccccccCCchhhHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988776432 123344557788887666667777777777632 11 111
Q ss_pred cccccccCcccCCcccccccccchHHHHHHHHHHHHhhhccCCCCCCcEEEEeCcccccccccccCCCCCccccccCChH
Q 000110 1829 GTVGYSDNSSCGTSSEASNGVERLSELALQLIHKAVDELEDDSGHREPTILVLDCEVQMLPWENIPILRNHEVYRMPSVG 1908 (2163)
Q Consensus 1829 ~r~~YdeiD~l~~~se~~d~i~v~~~~al~lih~A~~el~~~~~~r~hvILVLDk~L~~fPWESLP~Lr~~sVSRmPSL~ 1908 (2163)
.+++|||+|+. +. .-+.++.|.++.+.+. ...+.|||||||+.+|.||||+||||++++||||||+.
T Consensus 1353 ~~~AYDEID~d---------~l--~~~l~~~i~~yfn~~~--~~s~~htiLVld~S~h~FPwEsLp~l~~~SV~RVPSl~ 1419 (1622)
T COG5155 1353 QRNAYDEIDLD---------AL--LGKLLSDIGSYFNGLS--VGSIKHTILVLDESTHEFPWESLPVLRNKSVYRVPSLE 1419 (1622)
T ss_pred hhhccchhhhH---------HH--HHHHHHHHHHHhcccc--ccceeeEEEEEcCccccCchhhhhhhcccceeecChHH
Confidence 35788888752 11 1255566777777662 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccCCcccccCCCcEEEECCCCChHHHHHHHHH-HHhcCCccc--ccCCCCCHHHHHHHHhcC
Q 000110 1909 SIAATLERIHRHEQLVKGLLATFPLIDPLDAFYLLNPSGDLSETQLLFED-WFRDQNLVG--KAGSAPTAEELTLALKSH 1985 (2163)
Q Consensus 1909 ~L~~~L~r~~~~~~~~~~~~~~~~~VD~~~~~YILNPsGDL~~TQ~rF~~-~f~~~~W~G--ivGr~PseeE~~~aL~~~ 1985 (2163)
+|.+++.+.+-+ .++..+..++++|||||+|||++||++|+. -|-..+|.| ++|+ |+++.+.++|.++
T Consensus 1420 ~L~~~ls~F~~~--------~~~~~~~~~~~syILnP~~dL~~Tqe~f~g~K~~e~~~~~~lV~~~-P~~~~~~Kml~g~ 1490 (1622)
T COG5155 1420 YLENALSSFHYQ--------LPLQGASGRSFSYILNPENDLPKTQERFAGQKFLESSGITNLVTGR-PPSDLECKMLDGC 1490 (1622)
T ss_pred HHHHHHhhheec--------ccceeeeccceeEEeCCCCCCchhHHHhcccceeecCCccccccCC-CCcHHHHHhhcCC
Confidence 999988875411 223345567899999999999999999994 454567764 7888 7777789999999
Q ss_pred CeEEEeeccccccccchhhhccccccccEEEecCCccccccCCCCCCCchHHHHHhcCCceeeeecccCChhhHHHHHHH
Q 000110 1986 DLFIYLGHGSGSQYISRHDLLKLEKCAATFLMGCSSGSLSLNGCYIPQGTPLSYLLAGSPVIVANLWDVTDKDIDRFGKT 2065 (2163)
Q Consensus 1986 DLFLYfGHGsGeQYI~~~~I~rL~~CAasLLmGCSSg~L~~~G~fEP~Gt~l~YLlAGcP~VVGNLWDVTDkDIDRFt~~ 2065 (2163)
|+|+|||||||+||+++.+|+++.+||+++|||||||+|.+.|.|||+||++.||.+|||+||||||||||||||+|+.+
T Consensus 1491 d~flYfGHGgGeQY~~s~ei~~~~~~a~~~L~GCSS~al~~~g~~ep~Gtil~yL~~GcpmvvgnLWDVTDKDID~FS~~ 1570 (1622)
T COG5155 1491 DVFLYFGHGGGEQYLKSSEIKKCGEGATMLLFGCSSVALLCMGNYEPNGTILKYLRRGCPMVVGNLWDVTDKDIDSFSAR 1570 (1622)
T ss_pred CEEEEEecCCcceeeeHhhhhhhcccceeEEecCcHHHHHHhccCCCCCcHHHHHhcCCCeeeeeccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCcchhhhhcCCCcccccccccCCCCCcccccccCCCCCCCCCHHHHHHHHhhcCCccCccc
Q 000110 2066 MLDAWLRERSSVPVGCDQCSSVQDEAKNGRGKVNKKRMSRKKLPETSDISLCNNGCDHRPKLGSFMGQAREACKLPFLIG 2145 (2163)
Q Consensus 2066 LLe~W~~~~s~~~~~~~~c~~l~~e~~~gkG~~~k~~~~~k~~~~~~d~s~~~~~c~~~~sL~eAVa~AR~aCkLkYLnG 2145 (2163)
++|.||.. |+.+ +.. ...++..||+++|+.|+||||||
T Consensus 1571 i~es~g~~----------cns~---------------------~~~-----------NS~Sv~~AVS~sR~~chLRYLNG 1608 (1622)
T COG5155 1571 IIESLGSG----------CNSL---------------------GEL-----------NSLSVSYAVSRSRDGCHLRYLNG 1608 (1622)
T ss_pred HHHHhccc----------cccc---------------------ccc-----------cchhhhhhhhhccCceEEeecCC
Confidence 99999742 3211 110 13468899999999999999999
Q ss_pred cccEEeccceeee
Q 000110 2146 AAPVCYGVPTGIR 2158 (2163)
Q Consensus 2146 AApVVYGIPv~i~ 2158 (2163)
||||+||+|.++-
T Consensus 1609 AApVIYGlp~~~v 1621 (1622)
T COG5155 1609 AAPVIYGLPIKFV 1621 (1622)
T ss_pred CCceEecceeeec
Confidence 9999999999873
|
|
| >PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1849 consensus Regulator of spindle pole body duplication [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12770 CHAT: CHAT domain | Back alignment and domain information |
|---|
| >KOG1849 consensus Regulator of spindle pole body duplication [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-11
Identities = 92/590 (15%), Positives = 168/590 (28%), Gaps = 166/590 (28%)
Query: 1551 HLNYK-----FLSNMSWRFKAQDIVDTEASHVTGSSCIKTETGKLIRISPESIKDLEQFV 1605
YK F F +D+ D S + E I +S +++ +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILSKEEIDHIIMSKDAVSGT-LRL 67
Query: 1606 KDFLLSLPCTTVICVTLLGGAYTRLLQELLPLPSCVHAWMMLSRFNSINQPIVVLLPVNA 1665
LLS V + ++E+L + + ++M QP ++
Sbjct: 68 FWTLLSKQEEMV----------QKFVEEVLRIN---YKFLMSPIKTEQRQP--SMMTRMY 112
Query: 1666 VLQEDADYDDDDAITSF---RE---------LREIKD-----------CGKNWHCPWGST 1702
+ Q D Y+D+ + R L E++ GK +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TW 165
Query: 1703 IADDVAPAFKLI--MEDN--YLSSRSSYGDSLGQRSLWWNRRTKLDQRLCEFLR-----K 1753
+A DV ++K+ M+ +L+ ++ L ++D K
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIK 224
Query: 1754 LEDSWLGPWKYMLLGEWSNCKNL---DTV-HKKLVR--DLKCKC-----KANINESLL-- 1800
L + LL L V + K +L CK + + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 1801 ---RIVLGGLKGAFKGEECIAQLCFKKGCYVGTVGYSD--NSSCGTS--------SEASN 1847
I L +E + L K Y+ D T+ +
Sbjct: 285 TTTHISLDHHSMTLTPDE-VKSLLLK---YLD-CRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 1848 GVER--------LSELALQLIHKAVDELEDDSGHREP----TILVLDCEV-----QMLPW 1890
G+ +L +I +++ LE +R+ ++ + ++ W
Sbjct: 340 GLATWDNWKHVNCDKLT-TIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLI-W 396
Query: 1891 ENIP------IL------------RNHEVYRMPSVG-SIAATLE---RIHR----HEQLV 1924
++ ++ +PS+ + LE +HR H +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 1925 KGLLATFPLIDPLDA-FY------LLNPSGDLSETQLLFEDWFRD----QNLVGKAGSAP 1973
K + + LD FY L N + E LF F D + + +A
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 1974 TAEELTLALKSHDLFIYLGHGSGSQYISRHDLL--KLEKCAATFLMGCSS 2021
A L L Y YI +D +L FL
Sbjct: 515 NASGSILNT-LQQLKFY------KPYICDNDPKYERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2163 | |||
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 96.83 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 96.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 95.6 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 95.29 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 95.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 94.82 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 94.79 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 94.53 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 94.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 94.11 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 94.01 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 93.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 93.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 93.12 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 92.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 92.21 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 91.79 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 91.3 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 91.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 91.03 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 89.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 89.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 89.39 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 88.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 88.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 87.99 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 87.37 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 87.35 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 87.18 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 86.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 86.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 86.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 86.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 86.36 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 85.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 84.94 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 84.33 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 84.0 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 83.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 83.17 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 82.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 81.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 81.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 80.37 |
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.08 Score=59.30 Aligned_cols=329 Identities=16% Similarity=0.022 Sum_probs=189.7
Q ss_pred hhhhHhhhccchhhhcCcCCchhhHhhhHHHHHHhhcccCCCCCCcccchhhhHHHHHHhhhhccccCCchHHHHHHHHH
Q 000110 714 QRSGILLRKGRALRARGTEGLKDCIQCLSEAICVMNDISGDMSQHETLHCHQLAVAYCLRALCTQEAEPNSKQVIEDIGA 793 (2163)
Q Consensus 714 ersriL~~Kgr~~R~~G~~~l~~ci~~lseai~~l~~~~~~~~~~~~~~~~~lavayclra~C~qEae~~s~~~~~d~~~ 793 (2163)
..+..|..+|..+...| +....+++|.+|+.+- + +. ...++.+|...|.+-... -.-++-.+....
T Consensus 7 ~~~~~l~~~g~~~~~~g--~~~~A~~~~~~al~~~------~--~~---~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 72 (406)
T 3sf4_A 7 ASCLELALEGERLCKSG--DCRAGVSFFEAAVQVG------T--ED---LKTLSAIYSQLGNAYFYL-HDYAKALEYHHH 72 (406)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC------C--SC---HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhcC------c--cc---HHHHHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 34567778888877766 5667888888888762 0 11 122344455555444332 233444555555
Q ss_pred HHHhhHhccccCcccccccccchHHHHHHHHHHHhhccchhhHHhHHHHHHHHhhcccCCChhhHHHHHhhccccccccc
Q 000110 794 ALNLWLSVSICFESERCNMVSENTMLLLYNVVDLLSLKGFIEFHNNIYKLMLRLFKCKNVPLEKYLSILWESRRLSHALC 873 (2163)
Q Consensus 794 al~lw~~i~~~~~g~~~~~~~~~~~~ll~n~vDLl~lKg~~e~~~~~~kl~i~l~~~k~~~~ek~ls~lWe~rrlsH~lC 873 (2163)
|+.+...+. + .......++++..+....|-.+-=...|+-.+.+....+-+ ......|
T Consensus 73 al~~~~~~~-----~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~---------- 130 (406)
T 3sf4_A 73 DLTLARTIG-----D-----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARAL---------- 130 (406)
T ss_dssp HHHHHHHTT-----C-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHH----------
T ss_pred HHHHHHhcc-----c-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--cchHHHH----------
Confidence 665555441 1 13344567778888777776665555555555555433221 1111122
Q ss_pred ccccchHHHHHhHHHhcc--------------------ccchhhhhhhhccC-----CcccchhhhhhhhhhhccCCCCc
Q 000110 874 ISPVNDAFLVNLAEQCGE--------------------LSKSIEFWMGCLQG-----SQPLLVGFQQSLLFLFANSSHGC 928 (2163)
Q Consensus 874 ~sP~~~~fi~~~~~~~g~--------------------~~~~~~fw~~~~~~-----~~~~~v~~q~~~~~l~~~~~~~~ 928 (2163)
..+..+-...|+ ..+++.++...+.- .++.......+...++..
T Consensus 131 ------~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----- 199 (406)
T 3sf4_A 131 ------YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----- 199 (406)
T ss_dssp ------HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred ------HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-----
Confidence 112222333444 44555554443321 122222222222222211
Q ss_pred cccCCCCcccccHHhHHHHHHHhhccCCCCCCceeeehhHHHHhHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhhceee
Q 000110 929 YISKSSVQPCITIHDVKEAASELISSVPVTPRSVFLVGYLYYDLCERLIANGRLLEALSYAIEAHRLRTQLFQEKFSYSV 1008 (2163)
Q Consensus 929 ~~~~~~f~~~~~~~~v~~aA~~lis~~p~~~~s~f~a~~LyydL~erl~~~G~l~~A~syakEa~~Lr~klfq~kf~~~~ 1008 (2163)
.+-|..- +.- -+.|+++....+ .....+..|+.|+.-+...|+..+|+.+..+++++..+.
T Consensus 200 ---~g~~~~A--~~~-~~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 260 (406)
T 3sf4_A 200 ---LGNFRDA--VIA-HEQRLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------- 260 (406)
T ss_dssp ---HTBHHHH--HHH-HHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred ---ccCHHHH--HHH-HHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC---------
Confidence 1101110 111 122333333322 123446678888888888999999998888888664432
Q ss_pred ccccccccccccccccccCCCCccccccccceeeccCCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHhcChhhHHH
Q 000110 1009 ENSVKEYNDAGDISQKLHSSPKGFKPSSSVASEVWSFDASSWNVDGCYLSPWNVLQCYLESVLQVGIIHELVGNGVEAEA 1088 (2163)
Q Consensus 1009 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~a~~~w~~~~~~~~~~~~~lspW~vL~cYlES~lQvg~ihE~iGng~EAe~ 1088 (2163)
-.++. ..+.....|.++...|+-++|+.
T Consensus 261 ------------------------------------------------~~~~~----~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 261 ------------------------------------------------KDRAV----EAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp ------------------------------------------------TCHHH----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------cCchH----HHHHHHHHHHHHHHhCcHHHHHH
Confidence 00111 23344578999999999999999
Q ss_pred HhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhhhccccc
Q 000110 1089 FLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLKCRLILEVTVDQQLGDLSRSY 1168 (2163)
Q Consensus 1089 ~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~C~l~l~~t~~~~lgDL~~~~ 1168 (2163)
++.....+....+-+......-..||.+|.+.+.++.|..-++.|-++..+..... ..+.+...+|++....
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS--------GELTARLNLSDLQMVL 360 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCc--------chhHHHHHHHHHHHHh
Confidence 99998888777776777777777899999999999999999999999987765332 3455556666665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2163 | |||
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 84.39 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 82.63 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 81.4 |
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=84.39 E-value=3.4 Score=41.93 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhhccccccccCCcchhhHHHhhhhHHHHhhhchHHHHHHHHHHHHHHHhccccccccc
Q 000110 1069 SVLQVGIIHELVGNGVEAEAFLLWGKSISCTQSLPQFIVAFSSILGKLYRKKQLWDQAEKELKNAKQILVEKSINLSCLK 1148 (2163)
Q Consensus 1069 S~lQvg~ihE~iGng~EAe~~l~~Gk~iS~~q~Lp~f~v~FsS~LG~ly~kk~~Wd~Ae~EL~~Ak~~l~~~~~~~~C~~ 1148 (2163)
-....|.++...|+-++|+..+...-.+....+-+...+..-..+|.+|...+.++.|...+..|-++.........
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~--- 129 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL--- 129 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh---
Confidence 45567999999999999999999998888877777777788889999999999999999999999888765543221
Q ss_pred cchhhhhhhhhhhhhcccccCCCCCCCCcchhhhhhHHHHHHHHHhccC
Q 000110 1149 CRLILEVTVDQQLGDLSRSYSGCDDRGNTLIERLSNAEKLYKSALDKLN 1197 (2163)
Q Consensus 1149 C~l~l~~t~~~~lgDL~~~~~~~~~~~~~~~~~l~~A~~~Y~sAldKln 1197 (2163)
...+.....+|.+.... +++..|+..|+.+++...
T Consensus 130 ---~~~~~~~~~la~~~~~~-----------~~~~~a~~~~~~~~~~~~ 164 (366)
T d1hz4a_ 130 ---PMHEFLVRIRAQLLWAW-----------ARLDEAEASARSGIEVLS 164 (366)
T ss_dssp ---THHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHTT
T ss_pred ---hHHHHHHHHHHHHHHHh-----------cchhhhHHHHHHHHHHhh
Confidence 12233444556554443 456678888888876544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|