Citrus Sinensis ID: 000127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2127 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGH2 | 2176 | Methyl-CpG-binding domain | yes | no | 0.910 | 0.890 | 0.388 | 0.0 | |
| Q6IQX0 | 1503 | Lysine-specific demethyla | yes | no | 0.025 | 0.035 | 0.592 | 1e-13 | |
| Q5F3R2 | 1522 | Lysine-specific demethyla | yes | no | 0.034 | 0.048 | 0.459 | 2e-13 | |
| Q80Y84 | 1544 | Lysine-specific demethyla | no | no | 0.031 | 0.042 | 0.493 | 5e-13 | |
| Q96T23 | 1441 | Remodeling and spacing fa | yes | no | 0.023 | 0.034 | 0.571 | 7e-13 | |
| Q9UGL1 | 1544 | Lysine-specific demethyla | no | no | 0.031 | 0.043 | 0.472 | 9e-13 | |
| P29375 | 1690 | Lysine-specific demethyla | no | no | 0.025 | 0.031 | 0.518 | 6e-12 | |
| Q3UXZ9 | 1690 | Lysine-specific demethyla | no | no | 0.025 | 0.031 | 0.518 | 7e-12 | |
| Q30DN6 | 1545 | Lysine-specific demethyla | no | no | 0.025 | 0.035 | 0.490 | 8e-12 | |
| Q22516 | 1787 | Chromodomain-helicase-DNA | yes | no | 0.032 | 0.038 | 0.423 | 1e-11 |
| >sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1280 bits (3311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/2181 (38%), Positives = 1212/2181 (55%), Gaps = 244/2181 (11%)
Query: 52 RNSGEGSRIGGGGVG---LLDINALPPCEEE---SNELVSSGVHSPCDTSFICNSNNAPA 105
R GE S++ GV +LD+NA PP + E + E S H +S I NS +
Sbjct: 131 RTGGERSKLWPLGVKSKLILDMNASPPSDAEGYGAEETSDSRKHMLASSSCIGNSFDYAM 190
Query: 106 THSNLLYVGSQLDHLKASGSIAGFVRSGFEDIVQPRLIFGRNFRESDQSPVHR------- 158
HS+ +G L+ASG ++ + + + L FG ++ S R
Sbjct: 191 MHSSFSSLGRGHASLEASGLMSRNTKMSMDALGSHNLGFGFPLNLNNSSLPMRFPSLDPS 250
Query: 159 ------------------ERVWASGNSIPRTSYQ---NYYAVNGNRFDSMFDVPCHLGLV 197
E W P YQ Y A NG F S+ +V C+LGL
Sbjct: 251 ELFLQNLRHFISERHGVLEDGWRVEFRQPLNGYQLCAVYCAPNGKTFSSIQEVACYLGLA 310
Query: 198 --SNYRSVESQDRSDGFALVQKGLHLNQRRKESL-------------ISSQVKNFRECQE 242
NY ++++ R++ +L+Q+ LH +RRK S +S+Q++ F
Sbjct: 311 INGNYSCMDAEIRNEN-SLLQERLHTPKRRKTSRWPNNGFPEQKGSSVSAQLRRF----- 364
Query: 243 NSKGNFGGEFFSGIQTAEIQIPACNLRSNFGVTQVNLEENVGCDSLKVTVGLPVEFEDFC 302
F G+ S A ++F N GC + G P++FEDF
Sbjct: 365 ----PFNGQTMSPF--------AVKSGTHFQAGGSLSSGNNGCGCEEAKNGCPMQFEDFF 412
Query: 303 LLAVGEVDPRPSYHNSSQIWPVGYKSSWHDKVTGSLFVCDVSDGGDFGPLFKVKRYPCSA 362
+L++G +D R SYHN + I+P+GYKS WHDK+TGSLF C+VSDG + GP+FKV R PCS
Sbjct: 413 VLSLGRIDIRQSYHNVNVIYPIGYKSCWHDKITGSLFTCEVSDG-NSGPIFKVTRSPCSK 471
Query: 363 KRIPTGSTVFLRPSLEP---HDGKSLEGIEGTVGLHDDENTNIQMILSDDSPPHLGNDNL 419
IP GSTVF P ++ + L + DD + +++++LS+ PP LG+D L
Sbjct: 472 SFIPAGSTVFSCPKIDEMVEQNSDKLSNRRDSTQERDD-DASVEILLSEHCPP-LGDDIL 529
Query: 420 SDFGIDREQACKSQTINETKSDCLSKIAGRPTSDY-IVLDDD----IGEFLVEGRSSASV 474
S RE++ S+T+N +S+ S R D + D D IG+ +VE S +
Sbjct: 530 SCL---REKSF-SKTVNSLRSEVDS---SRVDFDKNLSYDQDHGVEIGDIVVEEDSLSDA 582
Query: 475 WRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSG 534
W+ VSQ LV AC + +Q G F C+H V + S E SLSKFCC
Sbjct: 583 WKKVSQKLVDACSIVLKQKGTLNFLCKH-VDRETSEINWDTMNEKDNVILSLSKFCCSLA 641
Query: 535 PVNIPHLIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFLDKRR 594
P ++ + E AL +WLDQ+RFGLD +FVQE++E +P C Y L R
Sbjct: 642 PCSVTCGEKDKSEFAAVVDALSRWLDQNRFGLDADFVQEMIEHMPGAESCTNYRTLKSRS 701
Query: 595 DWSTSQTVRSGFLRVRRKSNTYEKAADRHVFEGCQRPRGQVLE--NPVMKSYFPPGKPLS 652
S TV G L V+ K E D E ++ + L + V + PPG+P+
Sbjct: 702 SSSVPITVAEGALVVKPKGG--ENVKDEVFGEISRKAKKPKLNGGHGVRNLHPPPGRPMC 759
Query: 653 SKLPIELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEEL------------------RN 694
+LP L+GD +Q E+ WRF E+LG EE S + LE+EL R+
Sbjct: 760 LRLPPGLVGDFLQVSEVFWRFHEILGFEEAFSPENLEQELINPVFDGLFLDKPGKDDKRS 819
Query: 695 GSAFTLRSSSTS---TVAQEIGQAFIAEEMES--LRE-----AAHVRLASNTSSGHANVG 744
FT + S+ + ++ E Q F A+ + L+E ++ +++ ++
Sbjct: 820 EINFTDKDSTATKLFSLFDESRQPFPAKNTSASELKEKKAGDSSDFKISDSSRGSCVGAL 879
Query: 745 LANVLCSLLILLLGELQSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDLLPVN 804
L SLL +L+ ELQSKVA D +FD ES+SRR RKKD ++ + AK+ L +LPVN
Sbjct: 880 LTRAHISLLQVLICELQSKVAAFVDPNFDSGESRSRRGRKKD-DSTLSAKRNKLHMLPVN 938
Query: 805 VLTWPELARRYLLTVSSIEGNLDTVDFLNHESCKALNCFQGDSGTIRSSRPGVAGMEADA 864
TWPELARRY+L++ S++GNL++ + ES K C QGD G + S GVAGMEAD+
Sbjct: 939 EFTWPELARRYILSLLSMDGNLESAEIAARESGKVFRCLQGDGGLLCGSLTGVAGMEADS 998
Query: 865 LLLAEATKRIFGSLKNTSGPLSVHYNDSDAVGAHETVKVNNSGIPGWAQVLEPVRKLPTN 924
+LLAEA K+I GSL + + LSV +DSD + A ET + IP WAQVLEPV+KLPTN
Sbjct: 999 MLLAEAIKKISGSLTSENDVLSVEDDDSDGLDATET-NTCSGDIPEWAQVLEPVKKLPTN 1057
Query: 925 VGARIRKCIYDALDKDPPEWARKRLEHSISKEVYKGNASGPTKKAVLSVLADVCGEDQPQ 984
VG RIRKC+Y+AL+++PPEWA+K LEHSISKE+YKGNASGPTKKAVLS+LAD+ G D Q
Sbjct: 1058 VGTRIRKCVYEALERNPPEWAKKILEHSISKEIYKGNASGPTKKAVLSLLADIRGGDLVQ 1117
Query: 985 KPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGF 1044
+ + K R + SV DVIMK+CR VLR AAADE++V C LLGR LLN+SDNDD+GLLG
Sbjct: 1118 RSIKGTKKRTYISVSDVIMKKCRAVLRGVAAADEDKVLCTLLGRKLLNSSDNDDDGLLGS 1177
Query: 1045 PAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQN 1104
PAMVSRPLDFRTIDLRLA GAY GS EAFLEDV E+W I Y+DQ D + L L +
Sbjct: 1178 PAMVSRPLDFRTIDLRLAAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEK 1237
Query: 1105 FEVLYKKEVLTLVQKFADYPSLECLNSEAKKEMEDILESASEIPKAPWDEGVCKVCGIDK 1164
F+ LY+ EV+ LVQK DY LECL++E KKE++DI+ S +++PKAPWDEGVCKVCG+DK
Sbjct: 1238 FKSLYEAEVVPLVQKLKDYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDK 1297
Query: 1165 DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNKYMSQVPHVSSRIPKR 1224
DDD+VLLCDTCD+ YHTYCL PPL R+P+GNWYCP C+ K M+Q S ++ +R
Sbjct: 1298 DDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIA----KRMAQEALESYKLVRR 1353
Query: 1225 R----HQGEFTCRILEEVFHLAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLE 1280
R +QGE T +E HLA ME +DYW++S +ERI LLK LCDELL+S+ + +HLE
Sbjct: 1354 RKGRKYQGELTRASMELTAHLADVMEEKDYWEFSAEERILLLKLLCDELLSSSLVHQHLE 1413
Query: 1281 RCASVSVDLQQKIRSLSLEWRNLKFREEILAGKVARDKASVLSGTGKCGTEGVATLYPHY 1340
+CA +++QQK+RSLS EW+N K R+E L K+A+ + S+L G+ ++ +
Sbjct: 1414 QCAEAIIEMQQKLRSLSSEWKNAKMRQEFLTAKLAKVEPSILKEVGEPHN---SSYFADQ 1470
Query: 1341 GKLMRQPSGGGGYFSSFASDLALSEDGLQLNESRKLSFWFNSKGISMRQPSCSRNQIGEA 1400
QP G G DG+ ++ + + N + P + Q GE+
Sbjct: 1471 MGCDPQPQEGVG-------------DGVTRDDETSSTAYLNKN--QGKSPLETDTQPGES 1515
Query: 1401 --PYTESQVHQESEKDNIRVDDLQYDVPHSASQPQKQDTAGEYATWRNKGQDLENGHTSG 1458
+ ES++ S + I ++++P + + P D E T + + H +
Sbjct: 1516 HVNFGESKI---SSPETISSPG-RHELPIADTSPLVTDNLPEKDTSETLLKSVGRNHETH 1571
Query: 1459 PLQPNCEASQSHFSSDHTNGNQVAEHLCVMPINPENIVPGHHSIVQHDMNEPHAHDLKGS 1518
PN A + + H +Q ++ L Q D+ S
Sbjct: 1572 --SPNSNAVE--LPTAHDASSQASQEL---------------QACQQDL----------S 1602
Query: 1519 VLKNEIAVLQDSIAGLESQQLAVSLRKELLGRDSAGRLYWAFFRPNTSPWLLVDGTTVLE 1578
NEI LQ SI +ESQ L S+R++ LG D++GRLYW P+ +P +LVDG+ L
Sbjct: 1603 ATSNEIQNLQQSIRSIESQLLKQSIRRDFLGTDASGRLYWGCCFPDENPRILVDGSISL- 1661
Query: 1579 QERILKEHGDSLANSPFEEEYN-GISTSSSWFSYQSDTEIEELIQWLSDSDPRDKELAES 1637
Q+ + + S SPF + G S W Y+++TEI EL+QWL D D ++++L ES
Sbjct: 1662 QKPVQADLIGSKVPSPFLHTVDHGRLRLSPWTYYETETEISELVQWLHDDDLKERDLRES 1721
Query: 1638 ILRWTKIGYKDLKIAGNHIEDESVPSSSKRRKSEATVKSSGLVTKALTVLEEKHGPC--L 1695
IL W ++ Y D++ ++ S P V ++GL TKA +E+++GPC L
Sbjct: 1722 ILWWKRLRYGDVQKEKKQAQNLSAP-----------VFATGLETKAAMSMEKRYGPCIKL 1770
Query: 1696 EPEVLKMSMKLDTNSELTCKERMYRCECLEPVLPTRFHCRRCHLSFSARNELEEHNDAKC 1755
E E LK K +++ +E++ RCECLE +LP+ HC CH +F++ +E E+H ++KC
Sbjct: 1771 EMETLK---KRGKKTKVAEREKLCRCECLESILPSMIHCLICHKTFASDDEFEDHTESKC 1827
Query: 1756 ILSATSSQNSKEDDERTKGAGTIRTETLQAECMETAGKGMSQSLKHGTAMGSFEI---PK 1812
I + +++ K+ + +K +++++ L + +AGK +++ + + + + S I +
Sbjct: 1828 IPYSLATEEGKDISDSSKAKESLKSDYLNVK--SSAGKDVAE-ISNVSELDSGLIRYQEE 1884
Query: 1813 EFACPFNFEEISTKFITKNSIKELVQEIGLIGSNGVPAFVPSTSPYLCDPSLKLVEMCKN 1872
E P++FEEI +KF+TK+ ++LV+EIGLI SNG+P F+PS+S +L D L
Sbjct: 1885 ESISPYHFEEICSKFVTKDCNRDLVKEIGLISSNGIPTFLPSSSTHLNDSVLISA----- 1939
Query: 1873 EINRGNKSTNLENLFQYSIAG--DMVSGLEHDNISNNSSRRCTVSHNDDDVLKCRRLNPN 1930
+ NK ++ Q AG V GL + SN S R + + K L
Sbjct: 1940 ---KSNKPDGGDSGDQVIFAGPETNVEGLNSE--SNMSFDRSVTDSHGGPLDKPSGLGFG 1994
Query: 1931 FMNEKRDQSFNLRSLKPGIGNSSIVRDTSLMPLMGRGIEILRQLKINLLDMDAAVPEEAL 1990
F +K N +S G+ + +V +L + G+ + R LK NLLDMD A+PEEAL
Sbjct: 1995 FSEQK-----NKKSSGSGLKSCCVVPQAALKRVTGKALPGFRFLKTNLLDMDVALPEEAL 2049
Query: 1991 RSSKACWEKRSAWRAFVKSAKSIFEMVQATIVFEDMIKTDYLRNGWWYWSSLSGAANIAT 2050
R SK+ +R AWR FVKS++SI+E+VQATIV EDMIKT+YL+N WWYWSSLS AA I+T
Sbjct: 2050 RPSKSHPNRRRAWRVFVKSSQSIYELVQATIVVEDMIKTEYLKNEWWYWSSLSAAAKIST 2109
Query: 2051 VSALALRLYTLDAAIVYEK---HSDSI-EIQEHISQPDKETSPCKDSKSNPKPSKAILKT 2106
+SAL++R+++LDAAI+Y+K S+ I E + IS PD+++ P DS+
Sbjct: 2110 LSALSVRIFSLDAAIIYDKPITPSNPIDETKPIISLPDQKSQPVSDSQ------------ 2157
Query: 2107 QSSDLTEFSKTRSKSGKKRKD 2127
E S +SGKKRK+
Sbjct: 2158 ------ERSSRVRRSGKKRKE 2172
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Probable transcriptional regulator that acts as a histone acetyltranferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2127 | ||||||
| 359473443 | 2060 | PREDICTED: methyl-CpG-binding domain-con | 0.868 | 0.897 | 0.516 | 0.0 | |
| 296086550 | 1789 | unnamed protein product [Vitis vinifera] | 0.812 | 0.965 | 0.482 | 0.0 | |
| 255568758 | 1794 | DNA binding protein, putative [Ricinus c | 0.515 | 0.611 | 0.603 | 0.0 | |
| 359488845 | 2164 | PREDICTED: methyl-CpG-binding domain-con | 0.721 | 0.708 | 0.467 | 0.0 | |
| 297832794 | 2183 | methyl-CpG-binding domain 9 [Arabidopsis | 0.909 | 0.885 | 0.396 | 0.0 | |
| 15232121 | 2176 | methyl-CPG-binding domain 9 [Arabidopsis | 0.910 | 0.890 | 0.388 | 0.0 | |
| 255552612 | 2145 | DNA binding protein, putative [Ricinus c | 0.707 | 0.701 | 0.433 | 0.0 | |
| 413926302 | 1812 | hypothetical protein ZEAMMB73_046571 [Ze | 0.824 | 0.967 | 0.379 | 0.0 | |
| 296087685 | 1907 | unnamed protein product [Vitis vinifera] | 0.478 | 0.533 | 0.498 | 0.0 | |
| 449520433 | 1277 | PREDICTED: LOW QUALITY PROTEIN: methyl-C | 0.579 | 0.964 | 0.419 | 0.0 |
| >gi|359473443|ref|XP_002264500.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1812 bits (4693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 992/1919 (51%), Positives = 1303/1919 (67%), Gaps = 71/1919 (3%)
Query: 268 LRSNFGVTQVNLEENVGCDSLKVTVGLPVEFEDFCLLAVGEVDPRPSYHNSSQIWPVGYK 327
R+N VT EE GCD PV+FEDF +L++G++D RPSYHNSS IWPVGYK
Sbjct: 154 FRNNLRVTAAEPEEMGGCDFQYANNEFPVQFEDFYILSLGKIDSRPSYHNSSLIWPVGYK 213
Query: 328 SSWHDKVTGSLFVCDVSDGGDFGPLFKVKRYPCSAKRIPTGSTVFLRPSLEPHDGKSLEG 387
SSWHDK+TGS FVCDV D GD GP+FKV+R+PCS + I STV P+ +D K+ G
Sbjct: 214 SSWHDKITGSFFVCDVLDDGDSGPVFKVRRFPCSMQPIINASTVLSMPNFTQNDVKNKVG 273
Query: 388 IE--GTVGLHDDENTNIQMILSDDSPPHLGNDNLS--DFGIDREQACKSQTINETKSDC- 442
+ + G+ DD++++IQMI S++ PP+L D LS G++ + ++++ ++T+S+C
Sbjct: 274 SDNSASFGMDDDDDSSIQMIFSENDPPNLDYDVLSCSQNGLNEDCDVQTKSSSQTESNCR 333
Query: 443 LSKIAGRPTSDYIVLDDDIGEFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRH 502
L + +G+ + ++D+IGEFLVE SS+S W VSQT+VHAC + Y+QTGV +F C+H
Sbjct: 334 LLQSSGKLVLSNLRVEDNIGEFLVEASSSSSAWSKVSQTVVHACCEAYKQTGVLQFCCKH 393
Query: 503 DVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNIPHLIRSNDELETSCKALVKWLDQD 562
D+ +IW+ Y +++ +A S SL+KFC GP+NIP I+++ L+TSC AL+KWLDQD
Sbjct: 394 DLDQIWTPY-ATLNADAAASIGSLAKFCNFCGPINIPCCIQNDSVLDTSCDALIKWLDQD 452
Query: 563 RFGLDVEFVQEIVEQLPRVRVCAEYTFLDKRRDWSTSQTVRSGFLRVRRKSNTYEKAADR 622
RFGLDVEFVQEI+E LP V C+EY FL++R ST QT RSGFL +RKS
Sbjct: 453 RFGLDVEFVQEIIEHLPGVHACSEYEFLNRRTHNSTPQTFRSGFLLAKRKSEVQGGEKAG 512
Query: 623 HVFEGCQRPRGQVLENPVMKSYFPPGKPLSSKLPIELIGDVIQSWELLWRFSEVLGLEEP 682
++F+ C+RPR QV+E+PV++ PPGKPLS LP +LIGDV+Q WE LWRFSEVLGLEEP
Sbjct: 513 NLFK-CKRPRKQVVESPVIRDCCPPGKPLSLTLPADLIGDVLQIWESLWRFSEVLGLEEP 571
Query: 683 LSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEEMESLREAAHVRLASNTSSGHAN 742
+SF+ELEEEL + + +L S+S S V+ + QA E ES REA+ RLAS+
Sbjct: 572 ISFEELEEELLDCN-LSLCSASASGVSGKNAQALNTMETESKREASQARLASHNYGRFIG 630
Query: 743 VGLANVLCSLLILLLGELQSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDLLP 802
V L +LL +L+GEL SKVA D +FD ESKSRR RKKDA+NL+ KK+ +D LP
Sbjct: 631 VALTKAHSALLKVLVGELLSKVAAFADPNFDAGESKSRRGRKKDADNLIPVKKMKVDKLP 690
Query: 803 VNVLTWPELARRYLLTVSSIEGNLDTVDFLNHESCKALNCFQGDSGTIRSSRPGVAGMEA 862
+N LTWPELARRY+LT+SS+EG D + + E K C QGD GT+ S GVAGMEA
Sbjct: 691 INELTWPELARRYILTISSLEGKFDCAEINSREGWKVFRCLQGDGGTLCGSLTGVAGMEA 750
Query: 863 DALLLAEATKRIFGSLKNTSGPLSVHYNDSDAVGAHETVKVNNSGIPGWAQVLEPVRKLP 922
DALLLAEAT +IFGS+K+ + L + SDAVGA++T ++N+ IP WAQVLEPVRKLP
Sbjct: 751 DALLLAEATIKIFGSVKSKNDILRIDCIKSDAVGAYKTAELNDGEIPKWAQVLEPVRKLP 810
Query: 923 TNVGARIRKCIYDALDKDPPEWARKRLEHSISKEVYKGNASGPTKKAVLSVLADVCGEDQ 982
TNVGARIRKC+YDALD DPPEWA+K L+HSISKEVYKGNASGPTKKAV+++LADV +
Sbjct: 811 TNVGARIRKCVYDALDNDPPEWAKKILKHSISKEVYKGNASGPTKKAVIALLADVHSGNV 870
Query: 983 PQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLL 1042
++P +KRK + S D+IMKQCR VLR A+ D+E+VFCNLLGR +++ +DNDD+GLL
Sbjct: 871 QRRPDKKRKGKRVRSASDLIMKQCRTVLRRVASTDKEKVFCNLLGR-IMDPNDNDDKGLL 929
Query: 1043 GFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLC 1102
GFPAMVSRPLDFRTIDLRLA GAYGGS+EAFLEDV+EVWH+IC AY D SD + LA L
Sbjct: 930 GFPAMVSRPLDFRTIDLRLAVGAYGGSNEAFLEDVQEVWHNICIAYRD-SDDISLAEALS 988
Query: 1103 QNFEVLYKKEVLTLVQKFADYPSLECLNSEAKKEMEDILESASEIPKAPWDEGVCKVCGI 1162
++FE LY KEVLTLVQKF Y ++E LN+EAKKE+ED + A EIPKAPWDEG+CKVCG+
Sbjct: 989 KDFESLYSKEVLTLVQKFMSYANVEFLNAEAKKELEDTIACADEIPKAPWDEGLCKVCGV 1048
Query: 1163 DKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNKYMSQVPHVSSRIP 1222
DKDDDNVLLCD CDS YHTYCL PPL R+PEGNWYCP C++ ++ S+ V SR
Sbjct: 1049 DKDDDNVLLCDACDSEYHTYCLNPPLARIPEGNWYCPSCVAAQRLSQGTSRSAEVFSRCR 1108
Query: 1223 KRRHQGEFTCRILEEVFHLAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERC 1282
++R+QGEFT LE + HLA ME+++Y + S +ER+FLLKF C+E+LNS IREHLE+C
Sbjct: 1109 RKRYQGEFTRTYLETLTHLATIMEIKEYCELSIEERVFLLKFFCEEVLNSAIIREHLEQC 1168
Query: 1283 ASVSVDLQQKIRSLSLEWRNLKFREEILAGKVARDKASVLSGTG-KCGTEGVATLYPHYG 1341
AS+S DLQQK+R+LSLE RNLK REEILA KV + + L G G + GTE VA + +Y
Sbjct: 1169 ASLSADLQQKLRTLSLERRNLKLREEILAVKVEKANSVGLDGVGGEAGTEAVAMMLKNYS 1228
Query: 1342 KLMRQPSGGGGYFSSFASDLALSEDGLQLNESR---KLSFWFNSKGISMRQPSCSRNQIG 1398
KLM QP YF+SF S+L EDG Q NE K +WFN+KG + + SR+
Sbjct: 1229 KLMVQPLNKSNYFASFPSNLVSLEDGQQENEQNDFNKPPYWFNAKGFLEKHHATSRDLSM 1288
Query: 1399 EAPYTESQV-HQESEKDN-------------IRVDDLQY--DVPHSASQPQKQDTAGEYA 1442
+ P T+ Q+ +Q KDN R DD +P Q QK ++
Sbjct: 1289 KTPDTDDQMKYQHLAKDNSVPHENHFSSTPFFRKDDFSSLNKLPLFTPQSQKINSGEGND 1348
Query: 1443 TWRNKGQDLEN--GHTSGPLQPNCEASQSHFSSDHTNGNQVAEHLCVMPINPENIVPGHH 1500
+ N LE+ +G + P+ E Q D N ++EH+ M +N EN++ H+
Sbjct: 1349 SRSNFNSKLESEKDDDNGSVLPS-EILQRGILFDAIRTN-ISEHVHAMHVNSENMLLDHN 1406
Query: 1501 SIVQHDMNEPHAHDLKGSVLKNEIAVLQDSIAGLESQQLAVSLRKELLGRDSAGRLYWAF 1560
I Q E A++ + LKNEI+VLQDSIA LESQ L VS+RKE LG+DSAGRLYW F
Sbjct: 1407 GIGQPVAIESQAYNQEADSLKNEISVLQDSIASLESQLLKVSMRKEFLGKDSAGRLYWVF 1466
Query: 1561 FRPNTSPWLLVDGTTVLE-QERILKEHGDSLANSP------------------------- 1594
R TSPW+++DG+ + + KEH D+LAN+
Sbjct: 1467 SRAGTSPWVVIDGSMMAGLRGGEAKEHEDTLANNSTLRGSFPCGREKKFSSREFNISNRH 1526
Query: 1595 -FEEEYNGISTSSSWFSYQSDTEIEELIQWLSDSDPRDKELAESILRWTKIGYKDLKIAG 1653
++EY+ I S W S QS+ EIEELIQWL D++PR++EL ESIL+W + YKD A
Sbjct: 1527 MHDQEYS-IPMSFPWVSCQSNDEIEELIQWLRDNEPRERELLESILQWQRTKYKDSNKAK 1585
Query: 1654 NHIEDESVPSSSKRRKSEATVKSSGLVTKALTVLEEKHGPCLEPEVLKMSMKLDTNSELT 1713
++++DE P+SSK + SE T+ L T+A T+LE+K+GPC+E E + K NS +
Sbjct: 1586 SYVKDEQ-PTSSKTKNSERTLDY--LKTRAGTILEKKYGPCMELEATDIPKKRCPNSLVR 1642
Query: 1714 CKERMYRCECLEPVLPTRFHCRRCHLSFSARNELEEHNDAKCILSATSSQNSKEDDERTK 1773
C++RM+RCECLEP+ P+R HC CH SFS EL+ H+D C A++S+NS +DE K
Sbjct: 1643 CEQRMHRCECLEPIWPSRKHCLTCHQSFSTSEELKGHDDRICSSGASASENSMVNDESGK 1702
Query: 1774 GAGTIRTETLQAECMETAGKGMSQSLKHGTAMGSFEIPKEFACPFNFEEISTKFITKNSI 1833
G + T+ LQ + G S+S KH T G KE CPF+ EEISTKFI K+S
Sbjct: 1703 GKMMMNTDALQEHSDDLGMIGASKSEKHETVSGLINFDKELICPFDIEEISTKFIVKSSN 1762
Query: 1834 KELVQEIGLIGSNGVPAFVPSTSPY-LCDPSLKLVEMCKNEINRGNKSTNLENLFQYSIA 1892
KELV+EIGLIGSNG+P+F+P+TSPY L DP+L L+ +NE+N KS +EN Q
Sbjct: 1763 KELVREIGLIGSNGIPSFLPNTSPYYLNDPTLMLLAR-ENEVNPHKKSLIMENQLQQGPE 1821
Query: 1893 GDMVSGLEHDNISNNSSRRCTVSHNDDDVLKCRRLNPNFMNEKRDQSFNLRSLKPGIGNS 1952
+M +G+++ + SN+S+RRC++ + L+ +L N +N + S ++ + G+GN
Sbjct: 1822 RNMAAGIKYYHPSNDSTRRCSMDGIGEAFLETEKLRLNCINGRDQSSSTNQTSEGGLGNC 1881
Query: 1953 SIVRDTSLMPLMGRGIEILRQLKINLLDMDAAVPEEALRSSKACWEKRSAWRAFVKSAKS 2012
I+ ++SL PL G + LR+LKI+LLDMDAA+PEEA++ S A E+R AWRAFVKSA S
Sbjct: 1882 CIINESSLKPLEGWASQFLRKLKIDLLDMDAALPEEAVKPSNASLERRCAWRAFVKSAVS 1941
Query: 2013 IFEMVQATIVFEDMIKTDYLRNGWWYWSSLSGAANIATVSALALRLYTLDAAIVYE---K 2069
IF+MVQ+TI+ E+MIKT+YLRNGWWYWSSLS AA I+ +S+LALR+YTLDAAIVY+
Sbjct: 1942 IFQMVQSTIILENMIKTEYLRNGWWYWSSLSAAAKISNISSLALRIYTLDAAIVYDGPLP 2001
Query: 2070 HSDSIEIQEHISQPDKETSPCKDSKSNPKP-SKAILKTQSSDLTEFSKTRSKSGKKRKD 2127
S EI++ S+ DK+ + SNPK S+ I KT +SD T+ K RSKS KKRKD
Sbjct: 2002 GCSSTEIEKLGSESDKKLPIYPNPTSNPKSNSRTIQKTSNSDSTDRPKPRSKSSKKRKD 2060
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086550|emb|CBI32139.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255568758|ref|XP_002525350.1| DNA binding protein, putative [Ricinus communis] gi|223535313|gb|EEF36988.1| DNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359488845|ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297832794|ref|XP_002884279.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata] gi|297330119|gb|EFH60538.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15232121|ref|NP_186795.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana] gi|75337201|sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 gi|6692266|gb|AAF24616.1|AC010870_9 unknown protein [Arabidopsis thaliana] gi|332640148|gb|AEE73669.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|255552612|ref|XP_002517349.1| DNA binding protein, putative [Ricinus communis] gi|223543360|gb|EEF44891.1| DNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|413926302|gb|AFW66234.1| hypothetical protein ZEAMMB73_046571 [Zea mays] | Back alignment and taxonomy information |
|---|
| >gi|296087685|emb|CBI34941.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449520433|ref|XP_004167238.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2127 | ||||||
| TAIR|locus:2096672 | 2176 | MBD9 "methyl-CPG-binding domai | 0.263 | 0.257 | 0.584 | 0.0 | |
| UNIPROTKB|F1S4N3 | 1304 | KDM5B "Uncharacterized protein | 0.057 | 0.094 | 0.340 | 5.1e-12 | |
| UNIPROTKB|H0YDG9 | 276 | RSF1 "Remodeling and spacing f | 0.040 | 0.311 | 0.377 | 1.8e-11 | |
| UNIPROTKB|F1MUR2 | 1484 | KDM5B "Uncharacterized protein | 0.057 | 0.082 | 0.333 | 1.1e-10 | |
| UNIPROTKB|B3KV94 | 1275 | JARID1B "cDNA FLJ16281 fis, cl | 0.054 | 0.090 | 0.348 | 2.3e-10 | |
| UNIPROTKB|Q9UGL1 | 1544 | KDM5B "Lysine-specific demethy | 0.054 | 0.075 | 0.348 | 3.6e-10 | |
| ZFIN|ZDB-GENE-030131-5132 | 405 | dpf2l "D4, zinc and double PHD | 0.027 | 0.143 | 0.516 | 9.6e-10 | |
| UNIPROTKB|F1PJS3 | 1476 | KDM5B "Uncharacterized protein | 0.057 | 0.083 | 0.348 | 1.3e-09 | |
| UNIPROTKB|Q5F3R2 | 1522 | KDM5B "Lysine-specific demethy | 0.035 | 0.049 | 0.467 | 1.7e-09 | |
| ZFIN|ZDB-GENE-030424-1 | 1522 | kdm5bb "lysine (K)-specific de | 0.044 | 0.061 | 0.422 | 1.8e-09 |
| TAIR|locus:2096672 MBD9 "methyl-CPG-binding domain 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1721 (610.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 334/571 (58%), Positives = 423/571 (74%)
Query: 761 QSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDLLPVNVLTWPELARRYLLTVS 820
QSKVA D +FD ES+SRR RKKD ++ + AK+ L +LPVN TWPELARRY+L++
Sbjct: 896 QSKVAAFVDPNFDSGESRSRRGRKKD-DSTLSAKRNKLHMLPVNEFTWPELARRYILSLL 954
Query: 821 SIEGNLDTVDFLNHESCKALNCFQGDSGTIRSSRPGVAGMEADALLLAEATKRIFGSLKN 880
S++GNL++ + ES K C QGD G + S GVAGMEAD++LLAEA K+I GSL +
Sbjct: 955 SMDGNLESAEIAARESGKVFRCLQGDGGLLCGSLTGVAGMEADSMLLAEAIKKISGSLTS 1014
Query: 881 TSGPLSVHYNDSDAVGAHETVKVNNSGIPGWAQVLEPVRKLPTNVGARIRKCIYDALDKD 940
+ LSV +DSD + A ET + IP WAQVLEPV+KLPTNVG RIRKC+Y+AL+++
Sbjct: 1015 ENDVLSVEDDDSDGLDATET-NTCSGDIPEWAQVLEPVKKLPTNVGTRIRKCVYEALERN 1073
Query: 941 PPEWARKRLEHSISKEVYKGNASGPTKKAVLSVLADVCGEDQPQKPTRKRKNRCFTSVPD 1000
PPEWA+K LEHSISKE+YKGNASGPTKKAVLS+LAD+ G D Q+ + K R + SV D
Sbjct: 1074 PPEWAKKILEHSISKEIYKGNASGPTKKAVLSLLADIRGGDLVQRSIKGTKKRTYISVSD 1133
Query: 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLR 1060
VIMK+CR VLR AAADE++V C LLGR LLN+SDNDD+GLLG PAMVSRPLDFRTIDLR
Sbjct: 1134 VIMKKCRAVLRGVAAADEDKVLCTLLGRKLLNSSDNDDDGLLGSPAMVSRPLDFRTIDLR 1193
Query: 1061 LAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLVQKF 1120
LA GAY GS EAFLEDV E+W I Y+DQ D + L L + F+ LY+ EV+ LVQK
Sbjct: 1194 LAAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLVQKL 1253
Query: 1121 ADYPSLECLNSEAKKEMEDILESASEIPKAPWDEGVCKVCGIDKDDDNVLLCDTCDSGYH 1180
DY LECL++E KKE++DI+ S +++PKAPWDEGVCKVCG+DKDDD+VLLCDTCD+ YH
Sbjct: 1254 KDYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYH 1313
Query: 1181 TYCLTPPLTRVPEGNWYCPPCLSGNCKNKYMSQVPHVSSRIPKRR----HQGEFTCRILE 1236
TYCL PPL R+P+GNWYCP C+ K M+Q S ++ +RR +QGE T +E
Sbjct: 1314 TYCLNPPLIRIPDGNWYCPSCVIA----KRMAQEALESYKLVRRRKGRKYQGELTRASME 1369
Query: 1237 EVFHLAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERCASVSVDLQQKIRSL 1296
HLA ME +DYW++S +ERI LLK LCDELL+S+ + +HLE+CA +++QQK+RSL
Sbjct: 1370 LTAHLADVMEEKDYWEFSAEERILLLKLLCDELLSSSLVHQHLEQCAEAIIEMQQKLRSL 1429
Query: 1297 SLEWRNLKFREEILAGKVARDKASVLSGTGK 1327
S EW+N K R+E L K+A+ + S+L G+
Sbjct: 1430 SSEWKNAKMRQEFLTAKLAKVEPSILKEVGE 1460
|
|
| UNIPROTKB|F1S4N3 KDM5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H0YDG9 RSF1 "Remodeling and spacing factor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MUR2 KDM5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B3KV94 JARID1B "cDNA FLJ16281 fis, clone NT2RI3003104, highly similar to Homo sapiens Jumonji, AT rich interactive domain 1B (RBP2-like) (JARID1B), mRNA" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-5132 dpf2l "D4, zinc and double PHD fingers family 2, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PJS3 KDM5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5F3R2 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030424-1 kdm5bb "lysine (K)-specific demethylase 5Bb" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SGH2 | MBD9_ARATH | 2, ., 3, ., 1, ., 4, 8 | 0.3888 | 0.9106 | 0.8901 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2127 | |||
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-13 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 1e-11 | |
| cd04718 | 148 | cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol | 2e-05 | |
| pfam05964 | 54 | pfam05964, FYRN, F/Y-rich N-terminus | 8e-05 | |
| pfam05965 | 84 | pfam05965, FYRC, F/Y rich C-terminus | 8e-04 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 0.002 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 0.003 |
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-13
Identities = 26/48 (54%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTR--VPEGNWYCPPC 1201
C VCG DD +LLCD CD +H CL PPL +PEG WYCP C
Sbjct: 1 YCAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48
|
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51 |
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >gnl|CDD|218830 pfam05964, FYRN, F/Y-rich N-terminus | Back alignment and domain information |
|---|
| >gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus | Back alignment and domain information |
|---|
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2127 | |||
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.71 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.47 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.45 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.45 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.41 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.4 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.39 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.38 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.37 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.37 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.35 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.35 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.33 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.32 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.31 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.27 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.24 | |
| PF05964 | 54 | FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The | 99.22 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.2 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.2 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.15 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.13 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.07 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.07 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.06 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.06 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.04 | |
| smart00297 | 107 | BROMO bromo domain. | 99.03 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.01 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.0 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 98.97 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 98.92 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 98.91 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.88 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 98.84 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 98.7 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 98.69 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 98.69 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 98.57 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.5 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.37 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.36 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 98.27 | |
| smart00541 | 44 | FYRN "FY-rich" domain, N-terminal region. is somet | 98.26 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 98.13 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 98.08 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 98.06 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 98.05 | |
| PF02791 | 61 | DDT: DDT domain; InterPro: IPR004022 This domain i | 97.84 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 97.8 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 97.71 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.7 | |
| smart00571 | 63 | DDT domain in different transcription and chromoso | 97.61 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.58 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 97.41 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 97.39 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 97.38 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.36 | |
| PF15614 | 46 | WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | 97.36 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 96.87 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 96.8 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 96.72 | |
| PF01429 | 77 | MBD: Methyl-CpG binding domain; InterPro: IPR00173 | 96.61 | |
| PF05965 | 86 | FYRC: F/Y rich C-terminus; InterPro: IPR003889 The | 96.6 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 96.56 | |
| smart00542 | 86 | FYRC "FY-rich" domain, C-terminal region. is somet | 96.53 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 96.47 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.34 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 95.99 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 95.76 | |
| PF15613 | 38 | WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | 95.6 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 95.41 | |
| cd00122 | 62 | MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and | 95.34 | |
| cd01396 | 77 | MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me | 95.31 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 93.69 | |
| smart00391 | 77 | MBD Methyl-CpG binding domain. Methyl-CpG binding | 93.65 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 93.12 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 91.52 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 91.44 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 86.54 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 85.27 | |
| cd01397 | 73 | HAT_MBD Methyl-CpG binding domains (MBD) present i | 85.17 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 82.88 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 82.77 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 80.65 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 80.51 |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-18 Score=210.75 Aligned_cols=109 Identities=27% Similarity=0.389 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
-.+|++|..||+.|+.+.++|+|+.|||...|+ |++|+.||++|||||||+.||..|.|. +++.|++|||+
T Consensus 221 ~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~Lg--------LpDY~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL 291 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKHKHAWPFNEPVDVVKLG--------LPDYHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRL 291 (640)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcC--------CcchhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHH
Confidence 346999999999999999999999999996665 777999999999999999999999999 67779999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhHHhhhhhh
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 1117 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYkKqVLr~v 1117 (2127)
||.||++||+.+++|+.||..|...|+.+|..+.+.+.
T Consensus 292 ~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 292 TFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999998776554
|
|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00541 FYRN "FY-rich" domain, N-terminal region | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain | Back alignment and domain information |
|---|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >smart00571 DDT domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer | Back alignment and domain information |
|---|
| >PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant | Back alignment and domain information |
|---|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >smart00542 FYRC "FY-rich" domain, C-terminal region | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) | Back alignment and domain information |
|---|
| >cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD) | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >smart00391 MBD Methyl-CpG binding domain | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2127 | ||||
| 2e6r_A | 92 | Solution Structure Of The Phd Domain In Smcy Protei | 1e-10 | ||
| 3zvz_B | 57 | Phd Finger Of Human Uhrf1 Length = 57 | 1e-09 | ||
| 1f62_A | 51 | Wstf-Phd Length = 51 | 3e-09 | ||
| 1mm2_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 4e-09 | ||
| 3ask_A | 226 | Structure Of Uhrf1 In Complex With Histone Tail Len | 5e-09 | ||
| 4gy5_A | 241 | Crystal Structure Of The Tandem Tudor Domain And Pl | 6e-09 | ||
| 2kwj_A | 114 | Solution Structures Of The Double Phd Fingers Of Hu | 8e-09 | ||
| 2ysm_A | 111 | Solution Structure Of The First And Second Phd Doma | 2e-08 | ||
| 1mm3_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 2e-08 | ||
| 3zvy_A | 72 | Phd Finger Of Human Uhrf1 In Complex With Unmodifie | 2e-07 | ||
| 3t6r_A | 72 | Structure Of Uhrf1 In Complex With Unmodified H3 N- | 2e-07 | ||
| 3shb_A | 77 | Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 | 2e-07 | ||
| 3sou_A | 70 | Structure Of Uhrf1 Phd Finger In Complex With Histo | 2e-07 | ||
| 2lgg_A | 69 | Structure Of Phd Domain Of Uhrf1 In Complex With H3 | 2e-07 | ||
| 3v43_A | 112 | Crystal Structure Of Moz Length = 112 | 4e-07 | ||
| 2ln0_A | 110 | Structure Of Moz Length = 110 | 4e-07 | ||
| 2puy_A | 60 | Crystal Structure Of The Bhc80 Phd Finger Length = | 5e-07 | ||
| 2e6s_A | 77 | Solution Structure Of The Phd Domain In Ring Finger | 6e-07 | ||
| 2l5u_A | 61 | Structure Of The First Phd Finger (Phd1) From Chd4 | 2e-06 | ||
| 1xwh_A | 66 | Nmr Structure Of The First Phd Finger Of Autoimmune | 4e-05 | ||
| 2yql_A | 56 | Solution Structure Of The Phd Domain In Phd Finger | 4e-05 | ||
| 2kft_A | 56 | Nmr Solution Structure Of The First Phd Finger Doma | 9e-05 |
| >pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 | Back alignment and structure |
|
| >pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 | Back alignment and structure |
| >pdb|1F62|A Chain A, Wstf-Phd Length = 51 | Back alignment and structure |
| >pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 | Back alignment and structure |
| >pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 | Back alignment and structure |
| >pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 | Back alignment and structure |
| >pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 | Back alignment and structure |
| >pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 | Back alignment and structure |
| >pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 | Back alignment and structure |
| >pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 | Back alignment and structure |
| >pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 | Back alignment and structure |
| >pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide Length = 69 | Back alignment and structure |
| >pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112 | Back alignment and structure |
| >pdb|2LN0|A Chain A, Structure Of Moz Length = 110 | Back alignment and structure |
| >pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 | Back alignment and structure |
| >pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein 107 Length = 77 | Back alignment and structure |
| >pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 | Back alignment and structure |
| >pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 | Back alignment and structure |
| >pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56 | Back alignment and structure |
| >pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 7e-26
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 1142 ESASEIPKAPWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
S+ D +C+VC +DD +L CD CD YH +CL PPL +P G W CP C
Sbjct: 4 GSSGHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
Query: 1202 LSGNCKNK 1209
+ CK
Sbjct: 64 ILAECKQP 71
|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2127 | |||
| 2wzo_A | 146 | Transforming growth factor beta regulator 1; nucle | 99.76 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.65 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.55 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.54 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.54 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.54 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.53 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.52 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.52 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.51 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.49 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.48 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.47 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.47 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.46 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.46 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.45 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.42 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.42 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.42 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.37 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.37 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.37 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.37 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.36 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.36 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.34 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.31 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.28 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.27 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 99.24 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.23 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.23 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 99.22 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 99.2 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.19 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.19 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 99.18 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 99.17 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.17 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 99.15 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 99.13 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 99.12 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 99.11 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 99.09 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 99.08 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 99.07 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 99.06 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 99.04 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.03 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 98.99 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 98.99 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 98.98 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 98.98 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 98.97 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 98.96 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 98.95 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 98.95 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 98.95 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.93 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 98.92 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 98.9 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 98.79 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 98.76 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 98.72 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 98.67 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.53 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 98.52 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 98.46 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 98.3 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 98.3 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 98.28 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 98.28 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 98.12 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 98.1 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 97.98 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 97.98 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 97.94 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 97.91 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 97.86 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 97.74 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 97.71 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 97.52 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 97.51 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 97.31 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 97.31 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 97.29 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 97.28 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 97.25 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 97.17 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 97.13 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 96.93 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 96.74 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 96.66 | |
| 3vxv_A | 69 | Methyl-CPG-binding domain protein 4; methyl CPG bi | 96.59 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 96.34 | |
| 1d9n_A | 75 | Methyl-CPG-binding protein MBD1; PCM1, methylation | 96.28 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 96.17 | |
| 2ky8_A | 72 | Methyl-CPG-binding domain protein 2; DNA binding d | 96.16 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 95.96 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 95.82 | |
| 3c2i_A | 97 | Methyl-CPG-binding protein 2; water mediated recog | 95.76 | |
| 1ub1_A | 133 | MECP2, attachment region binding protein; chicken | 95.44 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 94.7 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 94.07 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 93.75 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 88.83 |
| >2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=185.38 Aligned_cols=64 Identities=33% Similarity=0.695 Sum_probs=58.8
Q ss_pred CcceeecCeEEEEecccc-CCCCCCCCcceeeccccc-----ccccCCCccEEEEEeccCCCCCceeEEEE
Q 000127 293 GLPVEFEDFCLLAVGEVD-PRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSDGGDFGPLFKVKR 357 (2127)
Q Consensus 293 ~~p~~~~~~~v~slg~i~-~r~~yh~~~~i~pvgyks-----~~~~~~~~~l~~c~v~dgg~~gp~f~~~r 357 (2127)
=||+.+|+++|+|||+|. +||.||++++||||||++ |..|+..++.|+|+|+|||+ ||+|+|+.
T Consensus 4 ~lP~~~g~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~~-~P~F~V~~ 73 (146)
T 2wzo_A 4 VFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGV-QPQFEIVP 73 (146)
T ss_dssp CCCEEETTEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECSS-SEEEEEEE
T ss_pred eecEEECCEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECCC-cceeEEEe
Confidence 389999999999999997 799999999999999999 44589999999999999996 89999874
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A* | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A | Back alignment and structure |
|---|
| >1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2127 | ||||
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 2e-17 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 2e-17 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 4e-16 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 1e-13 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 4e-13 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 1e-11 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 6e-10 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 2e-08 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 7e-07 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 3e-06 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 5e-06 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 6e-04 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 0.002 |
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Nuclear corepressor KAP-1 (TIF-1beta) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.2 bits (187), Expect = 2e-17
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201
+ +C + + ++++C+ C+ +H C P L VP W C C
Sbjct: 4 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 51
|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2127 | |||
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.42 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.39 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.39 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.37 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.21 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 99.03 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.94 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.87 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.5 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 98.25 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 98.1 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.96 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.96 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 97.54 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 97.51 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 97.27 | |
| d1ig4a_ | 75 | Methylation-dependent transcriptional repressor MB | 96.41 | |
| d1qk9a_ | 92 | Methyl-CpG-binding protein 2, MECP2 {Human (Homo s | 95.56 |
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-13 Score=133.45 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCchhhHHhhhcccccCCChhhhHhhHHH
Q 000127 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2127)
Q Consensus 1000 dlImKrCr~VLkeLl~sd~s~~F~kpVd~dlLnlEDnd~qGLLGYpdIIkRPMDLGTIDlRLa~G~Y~GSpE~FAEDVRL 1079 (2127)
|.+...|+.||..|..+..+++|..||++ ...++|..+|++||||+||..|+..+.|. +.+.|.+|+++
T Consensus 1 d~L~~~l~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~l 69 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKK----------SEAPDYYEVIRFPIDLKTMTERLRSRYYV-TRKLFVADLQR 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCccCCCCCh----------hhCcCHHHHcCCccCHHHHHHHhccCccC-CHHHHHHHHHH
Confidence 45688999999999999999999999976 23688999999999999999999999998 77889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhchhhhhhH
Q 000127 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2127)
Q Consensus 1080 VWsN~~tyNgdgSEVveLAekLSQiFESrYk 1110 (2127)
||.||..||+.++.+..+|..|.+.|+...+
T Consensus 70 i~~Na~~yN~~~s~~~~~A~~l~~~f~~~~k 100 (102)
T d3d7ca1 70 VIANCREYNPPDSEYCRCASALEKFFYFKLK 100 (102)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988876544
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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