Citrus Sinensis ID: 000129
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2114 | 2.2.26 [Sep-21-2011] | |||||||
| O75643 | 2136 | U5 small nuclear ribonucl | yes | no | 0.976 | 0.966 | 0.567 | 0.0 | |
| Q9VUV9 | 2142 | Putative U5 small nuclear | yes | no | 0.979 | 0.966 | 0.559 | 0.0 | |
| Q9U2G0 | 2145 | Putative U5 small nuclear | yes | no | 0.977 | 0.963 | 0.499 | 0.0 | |
| Q55CI8 | 2237 | Activating signal cointeg | yes | no | 0.980 | 0.926 | 0.470 | 0.0 | |
| Q9UT24 | 2176 | Pre-mRNA-splicing factor | yes | no | 0.969 | 0.942 | 0.461 | 0.0 | |
| F1NTD6 | 2211 | Activating signal cointeg | yes | no | 0.851 | 0.814 | 0.426 | 0.0 | |
| E1BNG3 | 2201 | Activating signal cointeg | no | no | 0.853 | 0.819 | 0.425 | 0.0 | |
| Q8N3C0 | 2202 | Activating signal cointeg | no | no | 0.853 | 0.819 | 0.419 | 0.0 | |
| E9PZJ8 | 2198 | Activating signal cointeg | no | no | 0.849 | 0.816 | 0.416 | 0.0 | |
| F1LPQ2 | 2197 | Activating signal cointeg | no | no | 0.789 | 0.760 | 0.433 | 0.0 |
| >sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 | Back alignment and function desciption |
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Score = 2464 bits (6386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1229/2167 (56%), Positives = 1598/2167 (73%), Gaps = 103/2167 (4%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PELEEKLKKSAKKKKERDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
+++E+ + +K+ E D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 -QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEE----DEEEEEDV 230
DY GD + N +++D+ GV V+FE ++++ +E V+EE D E +E V
Sbjct: 181 DY--GGD---KEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAV 235
Query: 231 AEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
S + G + +++ L+ +DIDA+WLQR++S+ +D I QK
Sbjct: 236 VRCTLSANLVASGELM-------SSKKKDLHPRDIDAFWLQRQLSRFYDDAI---VSQKK 285
Query: 291 AEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKK 349
A+EVL+IL DDRE EN+L+ L F+ F IK L ++R+ +++CT LA AQ + E+++
Sbjct: 286 ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKER 345
Query: 350 IEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLV 409
I +M P+L+ L QLH T E IREE R + S D +
Sbjct: 346 IMGKMEA-DPELSKFLYQLHETEK---------EDLIREERSRRERVRQSRMDTDLETM- 394
Query: 410 DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKP 469
D D G L RQ+LDL+ L F QG FMAN++C LP+GS R KGYEE+HVPA+K KP
Sbjct: 395 DLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKP 454
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
E+L+ + ++P++AQ F+G LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA+
Sbjct: 455 FGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 514
Query: 530 LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
+ +L+++ + N DG+ N ++KI+Y+APM++LV E+VG+ RL Y + V EL+GD
Sbjct: 515 MCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQ 574
Query: 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
L +++I TQIIV TPEKWDIITRK G+RTYTQLV+L+I+DEIHLLHD+RGPVLE++VAR
Sbjct: 575 LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 634
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+R IE T+E +RL+GLSATLPNYEDVA FLRV+ KGLFYFDNS+RPVPL Q Y+GI
Sbjct: 635 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE 694
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
KK ++RFQ+MN++ YEK++ AGK+QVL+FVHSRKET KTARAIRD LE DTLG FL+E
Sbjct: 695 KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 754
Query: 770 DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
S S E+L++ + K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTAT
Sbjct: 755 GSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 814
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
LAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD+ GEGI+IT H
Sbjct: 815 LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 874
Query: 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P
Sbjct: 875 ELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPT 934
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
LYG++ + LK D L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI+
Sbjct: 935 LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 994
Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEE 1069
+ T+ TYN+ LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EE
Sbjct: 995 NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEE 1054
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNL 1129
PSAKINVLLQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL
Sbjct: 1055 PSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNL 1114
Query: 1130 SKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTL 1189
KM+ KRMW PLRQF +P E++ K+EKK+F +ER YDL+ E+GELIR PKMG+T+
Sbjct: 1115 CKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTI 1174
Query: 1190 HKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYIL 1249
HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG E FW++VED D E IL
Sbjct: 1175 HKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVIL 1234
Query: 1250 HHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK 1309
HHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL +T LPVSFRHLILPEK
Sbjct: 1235 HHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294
Query: 1310 YPPPTELLDLQPLPVTALRNPLYEALYQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368
YPPPTELLDLQPLPV+ALRN +E+LYQ F FNPIQTQVF +YN+DDNV V APTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354
Query: 1369 GKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428
GKTIC+EFAILR ++SE R VYI P+EALA++ Y DW KF L +VV LTGE
Sbjct: 1355 GKTICAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1411
Query: 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488
T+ DLKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI
Sbjct: 1412 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1471
Query: 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548
SRMRYI+SQ+E IRIVALS+SL+NAKD+ W+G ++ FNF P VRPVPLE+HIQG +
Sbjct: 1472 SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFN 1531
Query: 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
I++ + R+ +M KP + AI +H+ +KP +VFVPSRK RLTA+D++T + D Q+ F
Sbjct: 1532 ISHTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRF 1589
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L +++ P+++ + + LK TL +GVGYLHEGL+ ++ +V LF +G I+V V S S
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1649
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
+CWG+ + AHLV++M TQYY+G+ +A+ DYP+ D+LQM+GHA+RPL D+ G+CVI+C
Sbjct: 1650 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1709
Query: 1729 RKEYYKKFL--------------------------------------------RLTQNPN 1744
+K+++KKFL R+TQNPN
Sbjct: 1710 KKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPN 1769
Query: 1745 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1804
YYNLQG+SHRHLSDHLSELVE T+SDLE SKCI IE++MD++P N GMIA+YYYI+YTTI
Sbjct: 1770 YYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTI 1829
Query: 1805 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864
E FS SL KT+++GL+E++++A+EY +PIR E+ ++R+L NPKF DPHV
Sbjct: 1830 ELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 1889
Query: 1865 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1924
K N LLQAH SR Q+ L+ D EE+L A RL+QA VDV+SSNGWLS AL AME++QMV
Sbjct: 1890 KTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV 1949
Query: 1925 TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 1984
TQ MW +DS L QLPHF + KRC + K +E+VFD++EMED+ER LLQ++D Q+ D
Sbjct: 1950 TQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIAD 2006
Query: 1985 IARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEG 2044
+ARFCNR+PNI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEG
Sbjct: 2007 VARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEG 2063
Query: 2045 WWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAF 2104
WW+V+GD K+N L++IKR++LQ+K++VKLDF APA G YTLYFM D+YMGCDQEY F
Sbjct: 2064 WWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPA-TGAHNYTLYFMSDAYMGCDQEYKF 2122
Query: 2105 TVDVKEA 2111
+VDVKEA
Sbjct: 2123 SVDVKEA 2129
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Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 2440 bits (6323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1214/2171 (55%), Positives = 1588/2171 (73%), Gaps = 101/2171 (4%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
A+A AR QYEY+ANS+LVL D RPR E TGE SL GK+D GDR R +
Sbjct: 2 ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 65 PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
P + EE K+K+ + + + D + A SEG Y+PKT+ETR YE +LS I
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL + + F LV++GK IT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
D+ A A N E +D+ G+ V+FEE+ EEESD DM E +++ +D E
Sbjct: 181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ +++ + + + SL+ DIDAYWLQR +S+ + D Q A +V
Sbjct: 238 RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
LKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA AQ ER++I E+
Sbjct: 295 LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M G LA IL QL ++ +E EAR S G+ A
Sbjct: 355 MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+HVPA+K P D N
Sbjct: 399 AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
E+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459 EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V EL+GD LTR+
Sbjct: 519 REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
QI TQ+IV TPEKWDIITRK G+RT+ LV+L+IIDEIHLLHD RGPVLE++VART+R
Sbjct: 579 QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L QQYIG+ KK L
Sbjct: 639 IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE DTLG FLKE S S
Sbjct: 699 KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759 MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819 VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879 YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
+ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939 SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999 LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
+RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSFRHLILPEK PP
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPP 1298
Query: 1314 TELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTI 1372
TELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV V APTGSGK
Sbjct: 1299 TELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMT 1358
Query: 1373 CSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432
+EFAI+R S+ R VY+ EALA + DW KFG L ++VV+LTGET D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFG-SLDIKVVKLTGETGTD 1414
Query: 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ SRMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
YI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PLE+HIQG ++T+
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534
Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++ D Q + F
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592
Query: 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1672
E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G ++V V+S +CWG
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWG 1652
Query: 1673 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732
+ ++AHLV++M TQ+Y+G+ +++ DYP+TD+LQM+G A+RP D KCV++C + +K++
Sbjct: 1653 MSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDF 1712
Query: 1733 YKKFL--------------------------------------------RLTQNPNYYNL 1748
+KKF+ RLTQNPNYYNL
Sbjct: 1713 FKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL 1772
Query: 1749 QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFS 1808
QGV+HRHLSDHLSELVENT+SDLE SKCI +E+DMD P N GMIA+YYYI+YTTIE FS
Sbjct: 1773 QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFS 1832
Query: 1809 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH--QRFSFEN---PKFTDPH 1863
SL KT+++GLLE+++SA+EY + +R EE+V+R L + + N PKF DPH
Sbjct: 1833 LSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPH 1892
Query: 1864 VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1923
+K N LLQAH SR Q+G L+ D E++L A RL+QA VDV+SSNGWLS A+ AME++QM
Sbjct: 1893 IKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQM 1952
Query: 1924 VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 1983
VTQ MW +DS L QLPHF ++ KRC E K IETVFD++E+ED++R LLQ+SD+Q+
Sbjct: 1953 VTQAMWSKDSYLKQLPHFSPEIVKRCTE---KKIETVFDIMELEDEDRTRLLQLSDLQMA 2009
Query: 1984 DIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEE 2043
D+ARFCNR+PNI++++EV D + + +G + + V LER+ E GPV + +P+ +EE
Sbjct: 2010 DVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEV---TGPVIAPFFPQKREE 2066
Query: 2044 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2103
GWW+V+GD KTN LL+IKR++LQ+K++VKLDF AP+ GK YTLY+M DSY+GCDQEY
Sbjct: 2067 GWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPS-PGKHDYTLYYMSDSYLGCDQEYK 2125
Query: 2104 FTVDVKEAGEE 2114
F+++V + E
Sbjct: 2126 FSIEVGDFQSE 2136
|
Putative RNA helicase involved in the second step of RNA splicing. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2165 bits (5609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1084/2169 (49%), Positives = 1492/2169 (68%), Gaps = 103/2169 (4%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PP-----ELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG 119
P + +K ++ R+ D G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELM-GAYKPRTQETKQTYEVILSFILDALG 120
Query: 120 GQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA 179
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 121 DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFS-- 178
Query: 180 GDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDV-----AEPN 234
+ G D+ ++ GV V+F D DEEE D MV E + EE+ + +
Sbjct: 179 --IEEENKPEGDGDIYENEGVNVQF---DSDEEEDDGGMVNEIKGDSEEESEEEEGVDTD 233
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ ++ G + +D++ G+ L+ +DIDA+W+QR +++ F DP Q+ EV
Sbjct: 234 YTATLKGDGHLTEDEQKA---RGI-LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEV 286
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L R +++ER +IE++
Sbjct: 287 IGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCT-LLRQANEKERLQIEDD 345
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M P+L IL L T + + +EKS R+ + K +A++ + +
Sbjct: 346 MRS-RPELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAAN---------EAIS 392
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G W R++LDL+ L F QG M+N++C+LP+GS R K YEEIHVPA+K +P
Sbjct: 393 AGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEG 452
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+L
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
Q++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V E++GD ++++
Sbjct: 513 QEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
Q TQ+IV TPEK+D++TRK G+R Y Q+V+LLIIDEIHLLHD+RGPVLESIV RT+RQ
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQ 632
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL QQYIG+ KK L
Sbjct: 633 MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE DTL F++E S S
Sbjct: 692 KRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSAS 751
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+QVL STATLAWG
Sbjct: 752 TEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWG 811
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GEGI+IT HSEL+Y
Sbjct: 812 VNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQY 871
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L++RML+NP LYG+
Sbjct: 872 YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGRIAS++Y ++ ++
Sbjct: 932 THEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESM 991
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PIP+KE+L+E SAK
Sbjct: 992 QTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAK 1051
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA LA+K L L KMV
Sbjct: 1052 TNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMV 1111
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
T+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+ PKMG+ L KF+
Sbjct: 1112 TQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFI 1171
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +ED DGE ILHHE+
Sbjct: 1172 RQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEF 1231
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SFRHLILPEKYPPP
Sbjct: 1232 FLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPP 1291
Query: 1314 TELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT 1371
TELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++NV+V AP GSGKT
Sbjct: 1292 TELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKT 1351
Query: 1372 ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431
+E A+LR+ + E +AVYI P+E +A + Y DW+ + +G +V LTGE M
Sbjct: 1352 AIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM 1408
Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491
DLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ SR
Sbjct: 1409 DLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
Query: 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551
RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVPL++ I+ ++++
Sbjct: 1469 RYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSH 1528
Query: 1552 FEARMQAMTKPTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609
+R AM +P + AI +HA KPALVFVP R+ R AV L+T + DG K
Sbjct: 1529 NASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLR 1588
Query: 1610 LWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE+ I+VCV+
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRG 1648
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD+ KCV++C
Sbjct: 1649 MCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTS 1708
Query: 1729 RKEYYKKFL--------------------------------------------RLTQNPN 1744
++ YYKKFL R+TQNPN
Sbjct: 1709 KRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPN 1768
Query: 1745 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1804
YYNLQG +HRHLSD LSELVE T+ DLE SKCI ++++MD N GMIASYYYISY TI
Sbjct: 1769 YYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTI 1828
Query: 1805 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864
E FS SL KT+ + L+E+++++SE+ +P+R E+ ++R+L +N KFTDPHV
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHV 1888
Query: 1865 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1924
K N L+ AH SR ++ L D E ++L A RL+QA VDV+SSNGWLS A+ AME+SQM+
Sbjct: 1889 KVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQML 1948
Query: 1925 TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 1984
TQ M+ + L QLPH L +R + K + +VF+L+E+E+D+R ++LQM +L D
Sbjct: 1949 TQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRSDILQMEGAELAD 2005
Query: 1985 IARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYP-KAKEE 2043
+ARFCN +P+I+++ E+++ + V + +++ L V LERD + PV + +P K KEE
Sbjct: 2006 VARFCNHYPSIEVATELEN-DVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEE 2064
Query: 2044 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2103
GWWLV+GD+++N LL IKR+ + KS V+LDFAAP G + L+F+ DSY+G DQE+
Sbjct: 2065 GWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAP-RPGHHKFKLFFISDSYLGADQEFD 2123
Query: 2104 FTVDVKEAG 2112
V+E G
Sbjct: 2124 VAFKVEEPG 2132
|
Putative RNA helicase involved in the second step of RNA splicing. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2037 bits (5277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/2250 (47%), Positives = 1486/2250 (66%), Gaps = 178/2250 (7%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPEL 68
+E AR KQY Y+ NS+LV ++ + EP GEPE+LWG++ GDR +P EL
Sbjct: 2 SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60
Query: 69 EEKLKK---------------------SAKKKKERDP------------------DADAA 89
EK++ + KK K ++P D
Sbjct: 61 LEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDIL 120
Query: 90 AASE---GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
+A+E G Y+PKTKETR YE +L+ IQ+ +G QP +V GA DEIL++LK+D ++ P+
Sbjct: 121 SATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPE 180
Query: 147 KKKEIEKLLNPIPNHVFDQLVSIGKLITDYQD---AGDAAGNDAANGGEDLDDDMGVAVE 203
KK EI KLL + + F +L +GK ITD++D A + LDD+ GVAV
Sbjct: 181 KKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVI 240
Query: 204 FEENDDDEEESDLDM----------------------VQEEDEEEEEDVAEPNASGAMQM 241
+E +++E SD ++ + +D E + N Q
Sbjct: 241 IDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQK 300
Query: 242 ----------GGGIDDDDESGDANEGMSL-NVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
D + D N L + +ID++W+QRKIS+ F++ D ++L
Sbjct: 301 IKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISE-FER--DHDLSKQL 357
Query: 291 AEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
AE+ L IL + + R E +L+ DK +K ++ N+ +++CT LA+A++ +ERKKI
Sbjct: 358 AEKTLNILRQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKI 417
Query: 351 EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
E+EM P +IL++L TA +K +EK+ E+ + KD + ++ +
Sbjct: 418 EDEMSS-NPVTLSILNRLKGNEVTAATTEKTIEKT---ESNK-KDVEMKQQQQQQQDEIK 472
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
+ ++LL+L+ L+FQQG M N++ P+GS+R KG+EEIHVPA + P
Sbjct: 473 K--------PKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPF 524
Query: 471 DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
+PNE+LI I E+PEW++ F+ G+ LNRVQS+++ A + +N+LL APT +GKTNVA
Sbjct: 525 NPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVA 584
Query: 529 VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
+LTIL ++ NR+ D G +KIVY+APMK+LV E+VGN S RL+ Y + V EL+GD
Sbjct: 585 MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGD 644
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
Q+LT +QI ETQIIVTTPEKWDIITRKSGDR YTQLVKL+IIDEIHLLHD RGPVLE IV
Sbjct: 645 QSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIV 704
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+R IE+T++ +RLVGLSATLPNYEDVA FLRV + G+FYFD+SYRP+PL QQYIGI
Sbjct: 705 ARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGI 763
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ +++ Q ND+ + KV G HQ+LIFVHSR+ETAKT + +RD A+E+ ++ R++
Sbjct: 764 S-DRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822
Query: 768 KEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
+ D SREIL+ + + +++ +LKDLLPYG IHHAG++R DR LVEDLFGD +QVL+S
Sbjct: 823 R-DPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIS 881
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D GEGIIIT
Sbjct: 882 TATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
EL++YLSL+N QL IESQF+S++AD LNAEIVLG++Q ++A NW+GYTYLYI M+R
Sbjct: 941 SQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIR 1000
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LY ++ + ++D L +RR DLVH+AATIL++N+L+KYDRKSG Q T+LG++AS+Y
Sbjct: 1001 NPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHY 1060
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI++ ++S Y EHLKP+M DIEL R+FSLS EFK V VR+ EK EL KLL+RVPIP+KE+
Sbjct: 1061 YITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKEN 1120
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+EEPS+KINVLLQ YIS LKL+G +L DM +I QSA R+ RALFEIVLK+GWAQLA+K
Sbjct: 1121 IEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKI 1180
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNL+KM+ +MWS Q+PLRQF+ I ++L +LE++ E Y+ + Q+LG I+ P G
Sbjct: 1181 LNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEG 1240
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
+ L +H FPKL L AHVQPI +L+VEL+ITPDF +D++ H +W+IVED DGE
Sbjct: 1241 KQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGE 1300
Query: 1247 YILHHEYFMLKKQYIE-EDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
IL+ EYF LKK+ + ED ++FTVP+ +PLPPQY++RV+SD W+G++ LP+SF+HLI
Sbjct: 1301 RILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLI 1360
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAA 1364
LPEKYPP LLDLQPLP+ L++P E++++ F FN IQTQVF +Y ++DN ++A
Sbjct: 1361 LPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISA 1420
Query: 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG--QGLGMRV 1422
PT SGKT+C+E A++R ++ + V VY+AP++ LA R +DW KFG G+ V
Sbjct: 1421 PTNSGKTVCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477
Query: 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482
+LTG+ D K+L++ II++ EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ GP
Sbjct: 1478 SDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGP 1537
Query: 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI 1542
+E++VSRMRYI++Q N +R++ALS+S+ANA+DL WIGAT +NF P VRP+P+E
Sbjct: 1538 TMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEY 1597
Query: 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM-TYSSMD 1601
IQG + +F ARM AMTKPT + ++ KN++ ++VFVP+RK R A D++ SS +
Sbjct: 1598 QIQGFEFPHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSFE 1655
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
+L+ + P+++++ LK +L+ GV + H+GL + ++ VV LF +G I+
Sbjct: 1656 DTLTKPYLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIR 1715
Query: 1662 VCVMSSSMCWGVP-LTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP-----LL 1715
V + + S+ W + + A LVV+MGTQ Y G++ + DYP+ D+LQM+G A + +
Sbjct: 1716 VLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVIS 1775
Query: 1716 DNSGKCVILCHAPRKEYYKKFL-------------------------------------- 1737
+ K ++LCHAP+KEYYK FL
Sbjct: 1776 NKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLT 1835
Query: 1738 ------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMD-LSPSNH 1790
RL QNPNYYNL GVSH HLS+HLSELVENT+ +LE S CI I++D D +SP N
Sbjct: 1836 WTFLYRRLNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNL 1895
Query: 1791 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1850
G+IASYYY+ Y TIE F SSL TR +G+++++++A E+ LPIR E++++ +L H
Sbjct: 1896 GIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHL 1955
Query: 1851 RFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGW 1910
+ P + + K N LLQ HFSR+ + +L DQ+ +L +A+RLLQA+VDVISSN W
Sbjct: 1956 PQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQKFILENATRLLQAIVDVISSNSW 2015
Query: 1911 LSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 1970
L A+ AME+SQM+TQ MW+ DS+ QLPH K +R + IE+VFDL+ ++D+
Sbjct: 2016 LQPAIAAMELSQMITQAMWDSDSVFKQLPHMNK---RRIDAITSQGIESVFDLMSLDDNS 2072
Query: 1971 RRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVG 2030
R +LL +S + D+ + ++P+ID+S++VQD +++ A +T+++V+ERDL G E
Sbjct: 2073 RIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDL-GDDEEN 2131
Query: 2031 PVYSN---------RYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEA 2081
P+ N YPK K GWW ++GD+K N LLAIKR++ +K++VK +F PA
Sbjct: 2132 PIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPA-V 2190
Query: 2082 GKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2111
GK +LY DSY GCDQE+ +++ A
Sbjct: 2191 GKHQLSLYLFSDSYNGCDQEHELNINILPA 2220
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1918 bits (4968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/2182 (46%), Positives = 1399/2182 (64%), Gaps = 132/2182 (6%)
Query: 17 QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKK 74
QY Y A S+LV D R R EPTGEPESL ++ G RA +P L +L +
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQ 88
Query: 75 SAKKKKERDPDADAAAASEGT-----------------------YQPKTKETRAAYEAML 111
++ R P DA + G Y P T ETR Y+ +L
Sbjct: 89 EVQEV--RLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYIL 146
Query: 112 SVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQLVSIG 170
S IQQ LG Q I+ AAD I+ +LK+ ++ +KK+IE++L+ +P F QLV++G
Sbjct: 147 SFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLG 206
Query: 171 KLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQE--------- 221
+TDY + N+ ++ GV V F E D++EE + E
Sbjct: 207 NRLTDYTVEQEEELNEEGV------NESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVL 260
Query: 222 ----EDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQA 277
EEE++++ P+ ++ E +++ ++IDA+WLQR+I++
Sbjct: 261 ETSISQEEEKKNIENPDTEVTFISA-------DTKKVTEIPTVHPREIDAFWLQREIAKY 313
Query: 278 FDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT 336
F D CQ+ + + L A+ D E+EN+L+ ++ F L++ L +NR +V CT
Sbjct: 314 F---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCT 370
Query: 337 RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKN-LEKSIREEARRLKD 395
L RA EER +EE++ G + IL+ L T + N L ++ E+A
Sbjct: 371 MLKRAATDEERLGVEEQIRAAG--RSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPV 428
Query: 396 ESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNK 455
+ + + + +DL+ F +G M+N+ LPEGS R T K
Sbjct: 429 SEIP---------LSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
GYEEIHVPA L +E+L+KI E+PEW+ AF LNR+QS +Y A + +NIL
Sbjct: 480 GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENIL 539
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
LCAPTGAGKTNVA+L IL +L + +D SFN N+KIVY+AP+KALV E+V N S RL
Sbjct: 540 LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
Y+++V EL+GD LT+QQI ETQIIVTTPEKWDIITRK+ D +Y LV+L+IIDE+HLL
Sbjct: 600 PYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLL 659
Query: 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
HD RGPVLESIVAR R E T E +RLVGLSATLPNY DVA FL V+ +KGLFYFD++Y
Sbjct: 660 HDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTY 719
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
RP PL Q++IGI K P +R Q N+ CYEKV+ AGK+QVLIFVHSRKETAKTAR IRD
Sbjct: 720 RPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRD 779
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
ALE +T+G L+ D+ SREIL++ D +LKDLLPYGFAIHHAGM R DRQ EDL
Sbjct: 780 KALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDL 839
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ
Sbjct: 840 FADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQ 899
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGTV++ ++ +W+
Sbjct: 900 FDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
GYTYLY+RMLR+PALY + PE +D L ++RADL+H+AA +L++ L+ Y+R+SG
Sbjct: 960 GYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLT 1018
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
T+LG++A+ YY++H +++ YN L T IEL R+FS S+EFK++ VR++EK+ELAKL
Sbjct: 1019 ATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKL 1078
Query: 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
L+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DMV++TQSAGR++RA+FEI L
Sbjct: 1079 LERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL 1138
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQE 1175
+RGW+ +A +L+ KM+ KR+W +PLRQF P+E++ ++EKK+F W+RY+DL P E
Sbjct: 1139 RRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE 1198
Query: 1176 LGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP 1235
LGEL+ PK GR ++ V FP+L + AHVQPITR++++VEL I F WDD + G E
Sbjct: 1199 LGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEA 1258
Query: 1236 FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295
FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EPLPP YFI++VSD+WL S T
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSIT 1318
Query: 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYN 1355
+P+SF+ LI+PEK+P PT LLDLQ PV++L NP + +LY FK FN IQTQVF +Y
Sbjct: 1319 KVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYK 1378
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+D+V + AP GSGKT+C+E A+L +H + G AVYIAP++ + RY +W KF
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFS 1435
Query: 1416 Q-GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G G +V+LTGE + DLKL++ +I TP +WD+LS+RW+ + +Q+V +I DEL
Sbjct: 1436 DLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQ 1495
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG 1534
L+GG GP+ E+++SR+RY+A Q+E IR+V LS S+ANA+DLGEW+G + +FNF P
Sbjct: 1496 LLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPK 1555
Query: 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594
RP PL IH+Q IT+F + M AM+KP + ++ K +VF P RK + A DL
Sbjct: 1556 DRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDL 1615
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
+T+S D D+ L+ E E F + +++ L+ +L+HG+ Y+ E + DQ +V L
Sbjct: 1616 VTFSMADEDE----YLFSLMENEAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYL 1670
Query: 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
+ G IKV + S + + + ++ V+VMGTQYYDG+E+ + DYP+++LLQM+G +
Sbjct: 1671 YRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIG 1730
Query: 1715 LDNSGKCVILCHAPRKEYYKKFL------------------------------------- 1737
+ +++ +KEYYKKFL
Sbjct: 1731 SSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWL 1790
Query: 1738 -------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIII-EEDMDLSPSN 1789
RL NP YY LQ ++H +S+ LS+LVE T++DL ++ I + +ED N
Sbjct: 1791 TWSYMYRRLVANPAYYGLQDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALN 1850
Query: 1790 HGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH 1849
MIAS+Y I+Y T++ F+ SL+ +T+MKGLLE++ SA+EY QLPIR E+ V+ R+
Sbjct: 1851 LAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSR 1910
Query: 1850 QRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNG 1909
NP + DPH K+ LL AHFSR ++ L +DQ+ +L LL A VD +SS G
Sbjct: 1911 LPVRLSNPNYEDPHTKSFILLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEG 1970
Query: 1910 WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDD 1969
L + ME+SQMVTQ +W+RDS L Q+P+F L +RC + + + VFD+++++D+
Sbjct: 1971 HLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNK---EGVHDVFDIIDLDDE 2027
Query: 1970 ERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEV 2029
+R ELL M + L A F N++P+ID+ FE++DSE+V A L V L R+LE EV
Sbjct: 2028 KRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEV 2087
Query: 2030 -GPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTL 2088
V + +P K E WWLV+ D KT LLAIK+++L R K++F PA G Y L
Sbjct: 2088 DTTVIAPYFPAQKTEHWWLVISDDKT--LLAIKKITLGRSLTTKMEFVPPA-MGTLKYKL 2144
Query: 2089 YFMCDSYMGCDQEYAFTVDVKE 2110
DSYMG D E F +V E
Sbjct: 2145 SCFSDSYMGVDYEKEFECNVLE 2166
|
Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures (By similarity). Required for pre-spliceosome formation, which is the first step of pre-mRNA splicing. This protein is associated with snRNP U5. Has a role in branch site-3' splice site selection. Associates with the branch site-3' splice 3'-exon region. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1531 bits (3964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 830/1944 (42%), Positives = 1191/1944 (61%), Gaps = 144/1944 (7%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
E+L GD E++N+L L + F LI+ LL+NR +V R Q+ + + ++E
Sbjct: 261 EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316
Query: 353 EMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE----ARRLKDESASDGGRDRRGL 408
+ + A T E++K L K R E ARR K ++ DG GL
Sbjct: 317 QCKKFIGENAKPNYGCQVT--IQSEQEKLLMKQYRREEKRNARREK-QAGEDGEVSGEGL 373
Query: 409 VDRDA---------------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKC 443
+ D LG+++ +DL+ + + + F+ K
Sbjct: 374 LCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGGAKV 433
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPE QR NK YEE+ +P + P+ EK++ I ++ E Q AFKGM +LNR+QS V
Sbjct: 434 FLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIV 493
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G +KIVYVAPMKAL
Sbjct: 494 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYVAPMKALA 552
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 553 AEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 612
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
LVKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 613 LVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLFYFD+ +RPVPL Q +IGI+ +Q+ M+++CYE V+ + HQV++FVH
Sbjct: 673 NPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVH 732
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA A+R+ A N + FL + ++ L++L P GF+IHH
Sbjct: 733 ARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHH 792
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L
Sbjct: 793 AGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGI 852
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD LNAEI
Sbjct: 853 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIA 912
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D L + R LV LD+
Sbjct: 913 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDK 972
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++G+F TDLGR AS+YYI + TI T+NE + ++ + S +EEF+
Sbjct: 973 ARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQ 1032
Query: 1042 VTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL D +P +E KIN+LLQ YIS+ +L+ SL SD ++
Sbjct: 1033 IKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVA 1092
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P +L KLE+
Sbjct: 1093 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE 1152
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ K+G + + VHQ P + + A +QPITRTVL+V L IT
Sbjct: 1153 KNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNIT 1212
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+++K+ + +E L FT+PI+EPL
Sbjct: 1213 PDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPL 1272
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL +P YE LY+
Sbjct: 1273 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYK 1332
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNPIQTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1333 -FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1388
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +VVELTG+ D++ + + +I++TPEKWD +SR W+
Sbjct: 1389 PLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQ 1448
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQ+VS+ IIDE+HL+G + GPVLEVIVSR +I+S E +R+V LST+LANA+DL
Sbjct: 1449 NRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDL 1508
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM M KP F AI H+ KP
Sbjct: 1509 ADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSP-AKPV 1567
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLT++DL+ + + + D K +L E+ I +++ LK TL G+G
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WLKMDEREMNDIIGTVRDSNLKLTLAFGIG 1626
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF KI+V + +S++ WGV AHLV+V GT+YYDG+ + D
Sbjct: 1627 MHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVD 1686
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------- 1737
YP+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1687 YPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNA 1746
Query: 1738 ------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773
RL NP YYNL VSH ++ +LS LVE ++ DLE
Sbjct: 1747 EIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLDNVSHDTMNKYLSSLVEKSLFDLEC 1806
Query: 1774 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1832
S CI I ED + P +G IASYYY+ + TI F L P++ ++ LL +L +A EY
Sbjct: 1807 SYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTD 1866
Query: 1833 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1891
LP+R E+++ L H F H K + LLQAHFS + + D + VL
Sbjct: 1867 LPVRHNEDQMNSELAKHLPIEVNPHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVL 1926
Query: 1892 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPH--------FMK 1943
A R+ QAM+DV + +GWL AL + QMV QG W DS LL +P+ F K
Sbjct: 1927 DQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQGRWIHDSSLLTVPNIEVQHLYLFQK 1986
Query: 1944 DLAKRCQ------ENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR---FCNRFPN 1994
++ + + P + + + E ++D ++ S++Q I++ F +R P
Sbjct: 1987 WSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFASIVD-SELQTAHISQAWNFLSRLPI 2045
Query: 1995 IDMSFEVQDS---------------------ENVR-----AGEDITLQVVLERD---LEG 2025
+++S ++ +N R A ++ LQ+ L+R +G
Sbjct: 2046 LNVSLSIKGCWDDPAQPQNEVPVPCLTADTRDNKRWIKLHADQEYVLQIHLQRTQMGYQG 2105
Query: 2026 RTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKK 2084
+ + V + R+PK K+EGW+L++G+ +L+A+KR R ++ V + F P GK
Sbjct: 2106 KQDSKAV-APRFPKVKDEGWFLILGEVDKKELIALKRTGYVRNRNTVSVAFYTPETPGKC 2164
Query: 2085 TYTLYFMCDSYMGCDQEYAFTVDV 2108
YTLY M DSY+G DQ+Y +++
Sbjct: 2165 IYTLYLMSDSYLGMDQQYDIYLNI 2188
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkhb3, enabling alkhb3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1515 bits (3923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 829/1947 (42%), Positives = 1179/1947 (60%), Gaps = 143/1947 (7%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + G GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGLL 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RD D + + D A + F+A K
Sbjct: 366 CFDPKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A N + FL + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 ARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL+V L+I+
Sbjct: 1144 KNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSIS 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 PDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YV+QV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KPTF AI H+ KP
Sbjct: 1500 ADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I I++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIGTIRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF KI+V + +S++ WGV AHLV++ GT+YYDG+ + D
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVD 1677
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------- 1737
+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1678 FPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNA 1737
Query: 1738 ------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773
RL NP+YYNL VSH ++ LS LVE ++ +LE
Sbjct: 1738 EIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLSDVSHDSVNKFLSNLVEKSLVELEH 1797
Query: 1774 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1832
S CI I ED + P +G IASYYY+ + T++ F L P+ + LL +L+ A EY
Sbjct: 1798 SYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTD 1857
Query: 1833 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1891
LP+R E+ + L F PH KA+ LLQAH SR + + D + VL
Sbjct: 1858 LPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVL 1917
Query: 1892 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK-DLAKRCQ 1950
A R+ QAM+DV + GWL L + QMV QG W +DS LL +PH L +
Sbjct: 1918 DQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHLHIFRK 1977
Query: 1951 ENPGK---------SIETVFDLVEMEDDERRELLQMSDVQL-----LDIARFCNRFPNID 1996
+PG SIE + +L+ + M + +L F + P ID
Sbjct: 1978 WSPGMKGPHAGYHGSIECLPELIHACAGKDHVFSSMIEKELPAPKMKQAWNFLSHLPVID 2037
Query: 1997 MSFEVQ------------------------DSENVR--AGEDITLQVVLERDL----EGR 2026
+ V+ D+ VR A ++ LQV L+R +G+
Sbjct: 2038 VGLSVKGWWDDAAEGHDEISITTVASDKHSDNRWVRLHADQEYVLQVSLQRVSLGFHKGK 2097
Query: 2027 TEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFAAPAEAGKKT 2085
+ V + R+PK+K+EGW+L++G+ +L+A+KRV R V + F P G+
Sbjct: 2098 QDSHAV-TPRFPKSKDEGWFLILGEVDKRELIALKRVGYVRSHHMVSISFYTPEVPGRYI 2156
Query: 2086 YTLYFMCDSYMGCDQEYAFTVDVKEAG 2112
YTLYFM D Y+G DQ+Y + V A
Sbjct: 2157 YTLYFMSDCYLGLDQQYDIHLHVTPAS 2183
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1503 bits (3891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1946 (41%), Positives = 1173/1946 (60%), Gaps = 141/1946 (7%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L + LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASIKSGD--ELQDELFELLGPEGLELIEKLLQNRITIV--DRFLNSSNDHRFQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGLM 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RDAD + + D A + F+A K
Sbjct: 366 CFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + PL EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+V+LLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A + F + + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 AQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K ++ D+ E+G ++ +G + + VHQ P +++ A +QPITRTVL+V L+I
Sbjct: 1144 KKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIY 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 ADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP
Sbjct: 1500 ADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I +++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIATVRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF K++V + +S++ WGV AHLV++ GT+YYDG+ + D
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVD 1677
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------- 1737
+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1678 FPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNA 1737
Query: 1738 ------------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773
RL NP+YYNL VSH ++ LS L+E ++ +LE
Sbjct: 1738 EIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLIELEL 1797
Query: 1774 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1832
S CI I ED + P +G IASYYY+ + T++ F L P+ + LL +L+ A EY
Sbjct: 1798 SYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTD 1857
Query: 1833 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1891
LP+R E+ + L F PH KA+ LLQAH SR + + D + VL
Sbjct: 1858 LPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVL 1917
Query: 1892 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHF---------- 1941
A R+ QAM+DV ++ GWL L + QMV QG W +DS LL LP+
Sbjct: 1918 DQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKK 1977
Query: 1942 MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIA-----RFCNRFPNID 1996
K + K SIE++ +L+ + M + +L F + P I+
Sbjct: 1978 WKPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVIN 2037
Query: 1997 MSFEVQDSEN--------------------------VRAGEDITLQVVLERDLEGRTEVG 2030
+ V+ S + + A ++ LQV L+R G +
Sbjct: 2038 VGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFGFHKGK 2097
Query: 2031 P---VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRV-KLDFAAPAEAGKKTY 2086
P + R+PK+K+EGW+L++G+ +L+A+KRV R V L F P G+ Y
Sbjct: 2098 PESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIY 2157
Query: 2087 TLYFMCDSYMGCDQEYAFTVDVKEAG 2112
TLYFM D Y+G DQ+Y ++V +A
Sbjct: 2158 TLYFMSDCYLGLDQQYDIYLNVTQAS 2183
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1488 bits (3851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/1935 (41%), Positives = 1173/1935 (60%), Gaps = 140/1935 (7%)
Query: 305 EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI 364
E++++L L + LI+ LL+NR+ +V R + + + +++ + L
Sbjct: 263 ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQDSCKKI---LGEN 317
Query: 365 LDQLHATRATAK-ERQKNLEKSIREEARRL---KDESASDGGRDRRGLVDRDA------- 413
+ + T + E++K L K R E +R+ + ++ DG G++ D
Sbjct: 318 SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377
Query: 414 --------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKCDLPEGSQRFTNK 455
+ LG+++ ++ + + + ++ F+A K LPEG QR K
Sbjct: 378 EHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTK 437
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+++A ++ +N+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
+CAPTGAGKTN+A+LTIL ++ + + G + +KIVYVAPMKAL AE+ S RL+
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYVAPMKALAAEMTNYFSKRLE 556
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHL 634
+ V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+VKLLI+DE+HL
Sbjct: 557 PLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHL 616
Query: 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
LH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN GLFYFD
Sbjct: 617 LHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGR 676
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753
+RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+R T +TA ++
Sbjct: 677 FRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
+ A + + FL + ++ +++L GF+IHHAGM R DR LVE
Sbjct: 737 IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVE 796
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L LD+MQ+ GRAGR
Sbjct: 797 NLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGR 856
Query: 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
PQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI LGTV N +EA
Sbjct: 857 PQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVR 916
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ YTYLY+RM NP YG++ + + D TL + R L+ LD+ +++++ ++GY
Sbjct: 917 WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGY 976
Query: 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA 1053
F TDLGR AS++YI + TI T+NE + ++ + S +EEF + VR++E EL
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELD 1036
Query: 1054 KLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
LL+ + +E KIN+LLQ YIS+ +++ SL SD ++ Q+A R++RALFE
Sbjct: 1037 ALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFE 1096
Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
I L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K+ ++ D+
Sbjct: 1097 IALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMR 1156
Query: 1173 PQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGY 1232
E+G ++ +G + + VHQ P + + A +QPITRTVL+V L I PDF W+D+VHG
Sbjct: 1157 KDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGT 1216
Query: 1233 V-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP QY+IR VSD+
Sbjct: 1217 VGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDR 1276
Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY F HFNP+QTQ+
Sbjct: 1277 WLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NFSHFNPVQTQI 1335
Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIAPL+AL +ER D
Sbjct: 1336 FHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDD 1392
Query: 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
W+I+ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+ R YVQQV++ I
Sbjct: 1393 WKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILI 1452
Query: 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLF 1529
IDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL +W+ GLF
Sbjct: 1453 IDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512
Query: 1530 NFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589
NF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP L+FV SR+ RL
Sbjct: 1513 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRL 1571
Query: 1590 TAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649
TA++L+ + + + D K +L +E++ I +++ LK TL G+G H GL++ D++
Sbjct: 1572 TALELIAFLATEEDPKQ-WLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRK 1630
Query: 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709
V LF K++V + +S++ WGV AHLV++ GT+YYDG+ + D+P+TD+LQMMG
Sbjct: 1631 TVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGR 1690
Query: 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------------------- 1737
A RP D+ GK VIL H +K++YKKFL
Sbjct: 1691 AGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQD 1750
Query: 1738 ------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEED-MD 1784
RL NP+YY+L VS ++ LS L+ ++ +LE S CI + ED
Sbjct: 1751 AMDYITWTYFFRRLIMNPSYYSLGDVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRT 1810
Query: 1785 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVR 1844
+ P G IASYYY+ + T++ F L P+ + LL +L+ A EY LP+R E+
Sbjct: 1811 IEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNN 1870
Query: 1845 RLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVD 1903
L F PH KA+ LLQAH SR + + D + VL A R+ QAM+D
Sbjct: 1871 ELAKCLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLD 1930
Query: 1904 VISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLP-------HFMKDLAKRCQENPGK- 1955
V +S GWL L + QMV QG W +DS LL +P H + + + K
Sbjct: 1931 VAASQGWLVTVLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRKWKPPVKSSHAKC 1990
Query: 1956 --SIETVFDLVEMEDDERRELLQMSDVQLLDIA-----RFCNRFPNIDMSFEVQDS---- 2004
SIE + +L+ + + M + +L F +R P I++ V+ S
Sbjct: 1991 RTSIECLPELIHACEGKDHVFSSMVEKELQPAKTKQAWNFLSRLPVINVGISVKGSWDDL 2050
Query: 2005 ------------------EN----VRAGEDITLQVVLERDL----EGRTEVGPVYSNRYP 2038
EN + A ++ LQV L+R +G+ E V + R+P
Sbjct: 2051 VEGHNELSISTLTADKRDENKWIKLHADQEYVLQVSLQRVHFGLPKGKHENHAV-TPRFP 2109
Query: 2039 KAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFAAPAEAGKKTYTLYFMCDSYMG 2097
K K+EGW+L++G+ +L+A+KRV R + F P G+ +TLY M D Y+G
Sbjct: 2110 KLKDEGWFLILGEVDKRELMAVKRVGFVRTHHDASISFFTPETPGRYIFTLYLMSDCYLG 2169
Query: 2098 CDQEYAFTVDVKEAG 2112
DQ+Y ++V +A
Sbjct: 2170 LDQQYDIYLNVIKAN 2184
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1468 bits (3801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1783 (43%), Positives = 1098/1783 (61%), Gaps = 113/1783 (6%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
A ++ F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q A
Sbjct: 412 AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++ + + G +
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
+KIVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD
Sbjct: 531 EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590
Query: 610 IITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++TRKS GD +Q+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSA
Sbjct: 591 VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
TLPNY DVA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+
Sbjct: 651 TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710
Query: 729 A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
V HQV++FVH+R T +TA ++ + A + + FL ++
Sbjct: 711 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
+++L GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771 QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
IY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
F+ LAD LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL +
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
R L+ LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE +
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLK 1086
++ + S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +Q
Sbjct: 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
PITRTVL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E
Sbjct: 1191 PITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKE 1250
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLP 1323
L FT+PI+EPLP QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP
Sbjct: 1251 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLP 1310
Query: 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383
VTAL YEALY F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R
Sbjct: 1311 VTALGCKAYEALY-NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFN 1369
Query: 1384 KASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443
K + +AVYIAPL+AL +ER DW+I+ + LG +V+ELTG+ D+K + K +I+
Sbjct: 1370 KYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIV 1426
Query: 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503
+TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +R
Sbjct: 1427 TTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVR 1486
Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563
IV LST+LANA+DL +W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP
Sbjct: 1487 IVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546
Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623
F H ++P L+ +P R +T ++L+ + + + D K +L +E+E I +
Sbjct: 1547 FQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-WLNMDEQEMENIIATV 1603
Query: 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683
++ LK TL G+G H GL++ D++ V LF K++V + +S++ WGV AHLV++
Sbjct: 1604 RDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIK 1663
Query: 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL------ 1737
GT+YYDG+ + D+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFL
Sbjct: 1664 GTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPV 1723
Query: 1738 --------------------------------------RLTQNPNYYNLQGVSHRHLSDH 1759
RL NP+YYNL VS ++
Sbjct: 1724 ESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSQDAINKF 1783
Query: 1760 LSELVENTISDLEASKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMK 1818
LS L+ ++ +LE S CI + ED + P G IASYYY+ + T++ F L P+ +
Sbjct: 1784 LSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTE 1843
Query: 1819 GLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQ 1878
LL +L+ A EY LP+R E+ L F PH KA+ LLQAH SR
Sbjct: 1844 ELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHLLLQAHLSRAM 1903
Query: 1879 V-GGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQ 1937
+ + D + VL A R+ QAM+DV +S GWL L + QMV QG W +DS LL
Sbjct: 1904 LPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLT 1963
Query: 1938 LPHF--------------MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 1983
+P+ +K +C+ SIE + +L+ + + M + +L
Sbjct: 1964 IPNIEQHHLHLFRKWKPPVKGPHAKCR----TSIECLPELIHACEGKEHVFSSMVEKELQ 2019
Query: 1984 DIA-----RFCNRFPNIDMSFEVQDS----------------------EN----VRAGED 2012
F + P I++ V+ S EN + A +
Sbjct: 2020 PAKTKQAWNFLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDENTWIKLHADQQ 2079
Query: 2013 ITLQVVLER---DLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS 2069
LQV L+R + + R+PK K+EGW+L++G+ +L+A+KRV R
Sbjct: 2080 YVLQVSLQRVHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELVAVKRVGFVRTH 2139
Query: 2070 R-VKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2111
+ F P G+ +TLY M D Y+G DQ+Y ++V +A
Sbjct: 2140 HEASISFFTPEAPGRYIFTLYLMSDCYLGLDQQYDIFLNVTKA 2182
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2114 | ||||||
| 225433894 | 2177 | PREDICTED: U5 small nuclear ribonucleopr | 0.995 | 0.966 | 0.850 | 0.0 | |
| 449459768 | 2175 | PREDICTED: U5 small nuclear ribonucleopr | 0.995 | 0.967 | 0.836 | 0.0 | |
| 224136151 | 2157 | predicted protein [Populus trichocarpa] | 0.983 | 0.964 | 0.836 | 0.0 | |
| 449517355 | 2175 | PREDICTED: LOW QUALITY PROTEIN: U5 small | 0.995 | 0.967 | 0.835 | 0.0 | |
| 356556951 | 2183 | PREDICTED: U5 small nuclear ribonucleopr | 0.994 | 0.962 | 0.833 | 0.0 | |
| 356525813 | 2183 | PREDICTED: U5 small nuclear ribonucleopr | 0.994 | 0.962 | 0.833 | 0.0 | |
| 147802492 | 2144 | hypothetical protein VITISV_042645 [Viti | 0.979 | 0.965 | 0.828 | 0.0 | |
| 357451431 | 2223 | U5 small nuclear ribonucleoprotein 200 k | 0.994 | 0.946 | 0.808 | 0.0 | |
| 297850522 | 2171 | EMB1507 [Arabidopsis lyrata subsp. lyrat | 0.993 | 0.967 | 0.796 | 0.0 | |
| 224121998 | 2175 | predicted protein [Populus trichocarpa] | 0.990 | 0.962 | 0.808 | 0.0 |
| >gi|225433894|ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3772 bits (9781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1847/2172 (85%), Positives = 1989/2172 (91%), Gaps = 68/2172 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62
Query: 64 RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL E L + +K+++ ++ ++ ++ EG YQPKTKETR
Sbjct: 63 RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181
Query: 165 QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
QLVSIG+LITD+QD GDAAG AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182 QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241
Query: 225 EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
E+++ + + N SGAMQMGGGIDDDD +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242 EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQ
Sbjct: 300 QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAEDQ 359
Query: 345 EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
EERKKIEEEM G G DLAAIL+QLHATRATAKERQK LEKSIREEARRLKDES DG RD
Sbjct: 360 EERKKIEEEMTGSGSDLAAILEQLHATRATAKERQKILEKSIREEARRLKDESGGDGDRD 419
Query: 405 RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
RRG VDRDA+ GWL GQRQLLDLD +AF QGG MAN+KC+LP GS R +KGYEE+HVP
Sbjct: 420 RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 479
Query: 464 AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
A+K L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 480 ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 539
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 540 KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 599
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 600 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 659
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 660 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 719
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 720 YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 779
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 780 GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 839
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 840 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 899
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 900 IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 959
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
MLRNP LYGL+ + L DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 960 MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 1019
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 1020 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1079
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL
Sbjct: 1080 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1139
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1140 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1199
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1200 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1259
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRH 1303
DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLGSQ+VLPVSFRH
Sbjct: 1260 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH 1319
Query: 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363
LILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNPIQTQVFTVLYNTDDNVLVA
Sbjct: 1320 LILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVLVA 1379
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
APTGSGKTIC+EFAILRNHQK SE+ ++RAVYIAP+EALAKERYRDWE KFG+GLGMRVV
Sbjct: 1380 APTGSGKTICAEFAILRNHQKGSES-IVRAVYIAPIEALAKERYRDWERKFGRGLGMRVV 1438
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
ELTGETA DLKLLE+GQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPV
Sbjct: 1439 ELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPV 1498
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543
LEVIVSRMRYIASQ ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH
Sbjct: 1499 LEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1558
Query: 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603
IQGVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVDL TYSS DG
Sbjct: 1559 IQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGG 1618
Query: 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVC 1663
+ FLL EE+EPF+ IQEEML+ATLRHGVGYLHEGL DQEVVS LFEAG I+VC
Sbjct: 1619 ENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVC 1678
Query: 1664 VMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723
VMSSS+CWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI
Sbjct: 1679 VMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1738
Query: 1724 LCHAPRKEYYKKFL--------------------------------------------RL 1739
LCHAPRKEYYKKFL RL
Sbjct: 1739 LCHAPRKEYYKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRL 1798
Query: 1740 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799
TQNPNYYNLQGVSHRHLSDHLSE VENT+SDLEASKC+ IE+DMDLSP N GMIASYYYI
Sbjct: 1799 TQNPNYYNLQGVSHRHLSDHLSESVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYI 1858
Query: 1800 SYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKF 1859
SYTTIERFSSSLT KT+MKGLLE+LASASEYAQ+PIRPGEE+++RRLI+HQRFSFENPK
Sbjct: 1859 SYTTIERFSSSLTSKTKMKGLLEILASASEYAQIPIRPGEEDLIRRLINHQRFSFENPKC 1918
Query: 1860 TDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAME 1919
TDPH+KANALLQAHFSRQ VGGNL LDQ EVLLSA RLLQAMVDVISSNGWL+LALLAME
Sbjct: 1919 TDPHIKANALLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMVDVISSNGWLNLALLAME 1978
Query: 1920 VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 1979
VSQMVTQGMWERDSMLLQLPHF KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD
Sbjct: 1979 VSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 2038
Query: 1980 VQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPK 2039
QLLDIARFCNRFPNID+++EV DSEN+RAG+DITLQV+LERDLEGRTEVG V + RYPK
Sbjct: 2039 SQLLDIARFCNRFPNIDITYEVLDSENLRAGDDITLQVMLERDLEGRTEVGSVDAPRYPK 2098
Query: 2040 AKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCD 2099
AKEEGWWLVVGDTK+NQLLAIKRV+LQRKS+VKL+FA PAEAG+K+YTLYFMCDSY+GCD
Sbjct: 2099 AKEEGWWLVVGDTKSNQLLAIKRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCD 2158
Query: 2100 QEYAFTVDVKEA 2111
QEY+F+VDV +A
Sbjct: 2159 QEYSFSVDVMDA 2170
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459768|ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3704 bits (9605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1815/2171 (83%), Positives = 1965/2171 (90%), Gaps = 66/2171 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RPPEL+EKLKKS +KKKE DP A+ + EG Y PKTKETRAA
Sbjct: 63 RPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND+ KNPDKKKEIEKLLNPIPN+VFDQL
Sbjct: 123 YEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFDQL 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQD DA G ANG LDDD+GVAVEFEEN++ EEESDLDMVQE++E+E
Sbjct: 183 VSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVEFEENEE-EEESDLDMVQEDEEDE 241
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
++ VAEPN SGAMQM GGIDDDD + + GM+LNVQDIDAYWLQRKISQA++QQIDPQQ
Sbjct: 242 DD-VAEPNGSGAMQMDGGIDDDDLQ-ENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQ 299
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDRE+E KLL HLQF+KFSL+KFLLRNRLKVVWCTRLAR++DQEE
Sbjct: 300 CQKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEE 359
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
RKKIEEEMM LGPDLAAIL+QLHATRATAKERQKNLEKSIREEARRLKDES D R RR
Sbjct: 360 RKKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRR 419
Query: 407 GLVDRDAD-GGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
V+RD D GG GQ QLLDLD++AFQQG L MAN KC LP+GS R KGYEEIHVP +
Sbjct: 420 DPVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKL 479
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
KP +EK +KI+ MP+WAQPAFKGMTQLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 480 NAKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKT 539
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+AL+ N DGS+NH++YKIVYVAPMKALVAEVVGNLSNRLQ Y VKVRELS
Sbjct: 540 NVAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELS 599
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GDQTLTRQQI+ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 600 GDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 659
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+ +KGLF+FDNSYRPV L QQYI
Sbjct: 660 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYI 719
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI VKKPLQRFQLMNDLCYEKV++ AGKHQVLIFVHSRKET+KTARAIRD AL NDTL R
Sbjct: 720 GITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSR 779
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FLKEDS SREIL +HTD+VKSN+LKDLLPYGFAIHHAGMTR DRQLVEDLF DGH+QVLV
Sbjct: 780 FLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLV 839
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAH VIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQ+DS G GIII
Sbjct: 840 STATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIII 899
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EA NW+GYTYLY+RML
Sbjct: 900 TGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRML 959
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLA + DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASY
Sbjct: 960 RNPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASY 1019
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKP MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL+RVPIP+KE
Sbjct: 1020 YYITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE 1079
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1080 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1139
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV+KRMWSVQTPLRQF+GI N+ILMKLEKKD AWERYYDLS QELGELIR PKM
Sbjct: 1140 ALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKM 1199
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHGYVE FWV+VEDNDG
Sbjct: 1200 GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDG 1259
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
E+I HHE+F+LKKQYI+EDH+LNFTVPI EPLPPQYFIRVVSD+WLGSQT+LPVSFRHLI
Sbjct: 1260 EFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLI 1319
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAP 1365
LPEK+PPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVLVAAP
Sbjct: 1320 LPEKFPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP 1379
Query: 1366 TGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425
TGSGKTIC+EFAILRN+QK + V+RAVYIAP+E+LAKERYRDW+ KFG+GLG+RVVEL
Sbjct: 1380 TGSGKTICAEFAILRNYQKGQDN-VLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVEL 1438
Query: 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485
TGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE
Sbjct: 1439 TGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1498
Query: 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545
VIVSRMRYIASQ+ENKIRIVALSTSLANAKD+G+WIGATSHGLFNFPPGVRPVPLEIHIQ
Sbjct: 1499 VIVSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQ 1558
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
GVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVD+MTYSS D +K
Sbjct: 1559 GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEK 1618
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665
FLL E++EPF+D I +EMLKA LRHGVGYLHEGL+ DQEVV+ LFEAG I+VCV+
Sbjct: 1619 LPFLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVI 1678
Query: 1666 SSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725
SSSMCWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDL+QMMGHASRPLLDNSGKCVILC
Sbjct: 1679 SSSMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILC 1738
Query: 1726 HAPRKEYYKKFL--------------------------------------------RLTQ 1741
HAPRKEYYKKFL RLTQ
Sbjct: 1739 HAPRKEYYKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQ 1798
Query: 1742 NPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISY 1801
NPNYYNLQGVSHRHLSDHLSELVE+T+SDLEASKCI IE+DMDLSPSN GMIASYYYISY
Sbjct: 1799 NPNYYNLQGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISY 1858
Query: 1802 TTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTD 1861
TTIERFSSSLT KT+MKGLLE+LASASEYA LPIRPGEEE++RRLI+HQRFSFENPK TD
Sbjct: 1859 TTIERFSSSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTD 1918
Query: 1862 PHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1921
PHVKANALLQA+FSRQ VGGNL LDQ EV++SASRLLQAMVDVISSNGWLSLALLAMEVS
Sbjct: 1919 PHVKANALLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVS 1978
Query: 1922 QMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ 1981
QMVTQG+WERDSMLLQLPHF K+LAKRCQEN GK+IET+FDLVEMED+ER ELLQMSD Q
Sbjct: 1979 QMVTQGLWERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQ 2038
Query: 1982 LLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAK 2041
LLDIARFCNRFPNIDM++EV D ENV AGE++TLQV LERDL+GRTEVGPV + RYPKAK
Sbjct: 2039 LLDIARFCNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAK 2098
Query: 2042 EEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQE 2101
EEGWWLVVGDTK+NQLLAIKRVSLQRK++VKLDF APA+ GKK+YTLYFMCDSY+GCDQE
Sbjct: 2099 EEGWWLVVGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQE 2158
Query: 2102 YAFTVDVKEAG 2112
Y+FTVDVK+A
Sbjct: 2159 YSFTVDVKDAA 2169
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136151|ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3697 bits (9587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1819/2175 (83%), Positives = 1959/2175 (90%), Gaps = 95/2175 (4%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPE+LWG+IDPRSFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADAA-----------------AASEGTYQPKTKETRAA 106
RP EL+EK+ K+ +KKKERD ++A + EG YQPKTKETRAA
Sbjct: 63 RPAELDEKINKAKRKKKERDAVSEAGPTRQAKRRRLREESVLTSTEEGVYQPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPLNIVS AADEILAVLKN++V+ DK+KEIEKLLNPIPN++F+Q+
Sbjct: 123 YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNNMFEQV 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQDAGD AG ANG + LDD +GVAVEF+E+++DEEE + E+EEE
Sbjct: 183 VSIGRLITDYQDAGDGAGASVANGDDALDDGVGVAVEFDEDNEDEEEDSDLDMVPEEEEE 242
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
E+DV EP SGAMQMGGGIDDD E G+ANEG++LNVQDIDAYWLQRKIS A++QQIDPQQ
Sbjct: 243 EDDVVEPGGSGAMQMGGGIDDD-EMGEANEGLNLNVQDIDAYWLQRKISLAYEQQIDPQQ 301
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQEE
Sbjct: 302 CQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAKDQEE 361
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
RK+IEEEMMGLGPDLA IL+QLHATRATAKERQKNLEKSIREEARRLKDE+ DG RDRR
Sbjct: 362 RKQIEEEMMGLGPDLAGILEQLHATRATAKERQKNLEKSIREEARRLKDETGGDGDRDRR 421
Query: 407 GLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
GLVDRDA+ GW+ GQ Q+LDLD++AF+QGGL MAN+KCDLP GS + KGYEE+HVPA+
Sbjct: 422 GLVDRDAESGWVKGQPQMLDLDSIAFEQGGLLMANKKCDLPVGSFKHQKKGYEEVHVPAL 481
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
K KP+ P+E+ +KISEMP+WAQPAFKGM QLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 482 KQKPIPPDERFVKISEMPDWAQPAFKGMQQLNRVQSKVYETALFKADNVLLCAPTGAGKT 541
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+ALNRN DGSFN++NYKIVYVAPMKALVAEVVGNLSNRLQ Y V+
Sbjct: 542 NVAVLTILQQIALNRNPDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQ----- 596
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 597 ----------------------WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 634
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPN+EDVALFLRV+L+KGLF+FDNSYRPVPLSQQYI
Sbjct: 635 IVARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVDLDKGLFHFDNSYRPVPLSQQYI 694
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI +KKPLQRFQLMND+CYEKV+ VAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL R
Sbjct: 695 GINIKKPLQRFQLMNDICYEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSR 754
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FL+EDS SREILQ+HT++VKSNDLKDLLPYGFA+HHAGMTRGDRQLVEDLF DGHVQVLV
Sbjct: 755 FLREDSASREILQTHTELVKSNDLKDLLPYGFAVHHAGMTRGDRQLVEDLFADGHVQVLV 814
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGIII
Sbjct: 815 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIII 874
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRML
Sbjct: 875 TGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRML 934
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLAP+VL DITL ERRADL+H+AA ILD+NNLVKYDRKSGYFQ TDLGRIASY
Sbjct: 935 RNPTLYGLAPDVLTRDITLEERRADLIHSAAAILDKNNLVKYDRKSGYFQGTDLGRIASY 994
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+KE
Sbjct: 995 YYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE 1054
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1055 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1114
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV KRMWSVQTPLRQF+GIPNEILMKLEKKD +W+RYYDL PQE+GELIRFPKM
Sbjct: 1115 ALNLCKMVNKRMWSVQTPLRQFHGIPNEILMKLEKKDLSWDRYYDLKPQEIGELIRFPKM 1174
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTL+KF+HQFPKL LAAHVQPITRTVL+VELTIT DF W+D VHGYVEPFWVIVEDNDG
Sbjct: 1175 GRTLYKFIHQFPKLNLAAHVQPITRTVLRVELTITADFQWEDNVHGYVEPFWVIVEDNDG 1234
Query: 1246 EYILHHEYFMLKKQYIEE----DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
+YILHHEYFMLKKQY++E D +LNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF
Sbjct: 1235 DYILHHEYFMLKKQYVDEHQVVDLTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1294
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVL 1361
RHLILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVL
Sbjct: 1295 RHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVL 1354
Query: 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421
VAAPTGSGKTIC+EFAILRNHQK E+ VMRAVYIAPLEA+A+ERYRDWE KFG+GLGMR
Sbjct: 1355 VAAPTGSGKTICAEFAILRNHQKGPES-VMRAVYIAPLEAIARERYRDWERKFGRGLGMR 1413
Query: 1422 VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481
VVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG
Sbjct: 1414 VVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1473
Query: 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE 1541
PVLEVIVSRMRYIASQ+ENKIRIVALS+SLANAKDLGEWIGATSHGLFNFPPGVRPVPLE
Sbjct: 1474 PVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE 1533
Query: 1542 IHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601
IHIQGVDI NFEARMQAMTKPT+T+IVQHAKN KPA+VFVP+RK+VRL AVDLMTYSSMD
Sbjct: 1534 IHIQGVDIANFEARMQAMTKPTYTSIVQHAKNGKPAIVFVPTRKHVRLAAVDLMTYSSMD 1593
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
G +K FLL EE+EPFI IQEEML+ATL HG+GYLHEGL+ DQEVVS LFEAG I+
Sbjct: 1594 GGEKPPFLLRSIEELEPFIGKIQEEMLRATLHHGIGYLHEGLSSLDQEVVSQLFEAGWIQ 1653
Query: 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721
VCVMSSSMCWGVPL+AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC
Sbjct: 1654 VCVMSSSMCWGVPLSAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1713
Query: 1722 VILCHAPRKEYYKKFL-------------------------------------------- 1737
VI CHAPRKEYYKKFL
Sbjct: 1714 VIFCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFTYR 1773
Query: 1738 RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYY 1797
RLTQNPNYYNLQGVSHRHLSDHLSELVENT++DLE SKC+ IEEDMDLSP N GMIASYY
Sbjct: 1774 RLTQNPNYYNLQGVSHRHLSDHLSELVENTLTDLERSKCVAIEEDMDLSPLNLGMIASYY 1833
Query: 1798 YISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENP 1857
YISYTTIERFSSSLTPKT+MKGLLE+L+SASEYAQLPIRPGEEEV+RRLI+HQRFSFENP
Sbjct: 1834 YISYTTIERFSSSLTPKTKMKGLLEILSSASEYAQLPIRPGEEEVLRRLINHQRFSFENP 1893
Query: 1858 KFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLA 1917
++ DPHVKAN LLQAHFSRQ VGGNL LDQ EVLLS SRLLQAMVDVISSNGWLSLALLA
Sbjct: 1894 RYADPHVKANVLLQAHFSRQSVGGNLALDQREVLLSGSRLLQAMVDVISSNGWLSLALLA 1953
Query: 1918 MEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQM 1977
MEVSQMVTQGMWERDSMLLQLPHF KD+AKRCQENPGKSIETVFDLVEMEDDERRELLQM
Sbjct: 1954 MEVSQMVTQGMWERDSMLLQLPHFTKDMAKRCQENPGKSIETVFDLVEMEDDERRELLQM 2013
Query: 1978 SDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRY 2037
SD QLLDI RFCNRFPNIDMS+EV D +NVRAGEDITL V LERDLEGRTEVGPV S RY
Sbjct: 2014 SDSQLLDIVRFCNRFPNIDMSYEVMDGDNVRAGEDITLLVTLERDLEGRTEVGPVDSPRY 2073
Query: 2038 PKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMG 2097
PKAKEEGWWLVVGDTK+NQLLAIKRVSLQRKS+VKL+FAAPA+ G+K+YTLYFMCDSY+G
Sbjct: 2074 PKAKEEGWWLVVGDTKSNQLLAIKRVSLQRKSKVKLEFAAPADTGRKSYTLYFMCDSYLG 2133
Query: 2098 CDQEYAFTVDVKEAG 2112
CDQEY F+VDV EA
Sbjct: 2134 CDQEYNFSVDVGEAA 2148
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517355|ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3697 bits (9587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1813/2171 (83%), Positives = 1963/2171 (90%), Gaps = 66/2171 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RPPEL+EKLKKS +KKKE DP A+ + EG Y PKTKETRAA
Sbjct: 63 RPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND+ KNPDKKKEIEKLLNPIPN+VFDQL
Sbjct: 123 YEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFDQL 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQD DA G ANG LDDD+GVAVEFEEN++ EEESDLDMVQE++E+E
Sbjct: 183 VSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVEFEENEE-EEESDLDMVQEDEEDE 241
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
++ VAEPN SGAMQM GGIDDDD + + GM+LNVQDIDAYWLQRKISQA++QQIDPQQ
Sbjct: 242 DD-VAEPNGSGAMQMDGGIDDDDLQ-ENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQ 299
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDRE+E KLL HLQF+KFSL+KFLLRNRLKVVWCTRLAR++DQEE
Sbjct: 300 CQKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEE 359
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
R KIEEEMM LGPDLAAIL+QLHATRATAKERQKNLEKSIREEARRLKDES D R RR
Sbjct: 360 RXKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRR 419
Query: 407 GLVDRDAD-GGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
V+RD D GG GQ QLLDLD++AFQQG L MAN KC LP+GS R KGYEEIHVP +
Sbjct: 420 DPVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKL 479
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
KP +EK +KI+ MP+WAQPAFKGMTQLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 480 NAKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKT 539
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+AL+ N DGS+NH++YKIVYVAPMKALVAEVVGNLSNRLQ Y VKVRELS
Sbjct: 540 NVAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELS 599
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GDQTLTRQQI+ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 600 GDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 659
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+ +KGLF+FDNSYRPV L QQYI
Sbjct: 660 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYI 719
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI VKKPLQRFQLMNDLCYEKV++ AGKHQVLIFVHSRKET+KTARAIRD AL NDTL R
Sbjct: 720 GITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSR 779
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FLKEDS SREIL +HTD+VKSN+LKDLLPYGFAIHHAGMTR DRQLVEDLF DGH+QVLV
Sbjct: 780 FLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLV 839
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAH VIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQ+DS G GIII
Sbjct: 840 STATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIII 899
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EA NW+GYTYLY+RML
Sbjct: 900 TGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRML 959
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLA + DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASY
Sbjct: 960 RNPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASY 1019
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKP MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL+RVPIP+KE
Sbjct: 1020 YYITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE 1079
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1080 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1139
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV+KRMWSVQTPLRQF+GI N+ILMKLEKKD AWERYYDLS QELGELIR PKM
Sbjct: 1140 ALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKM 1199
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHGYVE FWV+VEDNDG
Sbjct: 1200 GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDG 1259
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
E+I HHE+F+LKKQYI+EDH+LNFTVPI EPLPPQYFIRVVSD+WLGSQT+LPVSFRHLI
Sbjct: 1260 EFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLI 1319
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAP 1365
LPEK+PPP ELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVLVAAP
Sbjct: 1320 LPEKFPPPMELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP 1379
Query: 1366 TGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425
TGSGKTIC+EFAILRN+QK + V+RAVYIAP+E+LAKERYRDW+ KFG+GLG+RVVEL
Sbjct: 1380 TGSGKTICAEFAILRNYQKGQDN-VLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVEL 1438
Query: 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485
TGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE
Sbjct: 1439 TGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1498
Query: 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545
VIVSRMRYIASQ+ENKIRIVALSTSLANAKD+G+WIGATSHGLFNFPPGVRPVPLEIHIQ
Sbjct: 1499 VIVSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQ 1558
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
GVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVD+MTYSS D +K
Sbjct: 1559 GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEK 1618
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665
FLL E++EPF+D I +EMLKA LRHGVGYLHEGL+ DQEVV+ LFEAG I+VCV+
Sbjct: 1619 LPFLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVI 1678
Query: 1666 SSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725
SSSMCWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDL+QMMGHASRPLLDNSGKCVILC
Sbjct: 1679 SSSMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILC 1738
Query: 1726 HAPRKEYYKKFL--------------------------------------------RLTQ 1741
HAPRKEYYKKFL RLTQ
Sbjct: 1739 HAPRKEYYKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQ 1798
Query: 1742 NPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISY 1801
NPNYYNLQGVSHRHLSDHLSELVE+T+SDLEASKCI IE+DMDLSPSN GMIASYYYISY
Sbjct: 1799 NPNYYNLQGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISY 1858
Query: 1802 TTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTD 1861
TTIERFSSSLT KT+MKGLLE+LASASEYA LPIRPGEEE++RRLI+HQRFSFENPK TD
Sbjct: 1859 TTIERFSSSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTD 1918
Query: 1862 PHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1921
PHVKANALLQA+FSRQ VGGNL LDQ EV++SASRLLQAMVDVISSNGWLSLALLAMEVS
Sbjct: 1919 PHVKANALLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVS 1978
Query: 1922 QMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ 1981
QMVTQG+WERDSMLLQLPHF K+LAKRCQEN GK+IET+FDLVEMED+ER ELLQMSD Q
Sbjct: 1979 QMVTQGLWERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQ 2038
Query: 1982 LLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAK 2041
LLDIARFCNRFPNIDM++EV D ENV AGE++TLQV LERDL+GRTEVGPV + RYPKAK
Sbjct: 2039 LLDIARFCNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAK 2098
Query: 2042 EEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQE 2101
EEGWWLVVGDTK+NQLLAIKRVSLQRK++VKLDF APA+ GKK+YTLYFMCDSY+GCDQE
Sbjct: 2099 EEGWWLVVGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQE 2158
Query: 2102 YAFTVDVKEAG 2112
Y+FTVDVK+A
Sbjct: 2159 YSFTVDVKDAA 2169
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556951|ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3692 bits (9574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1818/2180 (83%), Positives = 1975/2180 (90%), Gaps = 78/2180 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSA-------------------KKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL+EKL+K+ K++ D+ +A+ +G YQPKTKETR
Sbjct: 63 RPPELDEKLEKAKNKKKKKDRDAAADDAAAVPSKRRRVQHDSVLSASDDGVYQPKTKETR 122
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQ QLGGQPL+IVS AADEILAVLKND VKNPDKKK+IEKLLNPIP HVFD
Sbjct: 123 AAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDVVKNPDKKKDIEKLLNPIPGHVFD 182
Query: 165 QLVSIGKLITDYQDAGDAA-GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEED 223
QLVSIGKLITD+Q+A D G+ A +G E LDDD+GVAVEFEEN+DD+EESDLD+VQ+E+
Sbjct: 183 QLVSIGKLITDFQEAVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEE 242
Query: 224 EEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
EE+E+ V EPN+SGAMQMGG D+D E G NEGM LNVQDIDAYWLQRKISQAF+QQID
Sbjct: 243 EEDED-VTEPNSSGAMQMGGIDDEDMEEG--NEGMGLNVQDIDAYWLQRKISQAFEQQID 299
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQ CQKLAEEVLKILAEGDDREVENKLL+HL+FDKFSLIKFLLRNRLK+VWCTRLARAQD
Sbjct: 300 PQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD 359
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG- 402
QEER++IEEEM G +L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ DG
Sbjct: 360 QEERERIEEEMKG--TELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDK 417
Query: 403 ----RDRRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGY 457
R RR + DRD + GWL GQRQ+LDLD++AF QGG FMA +KCDLP+GS R +KGY
Sbjct: 418 ESRDRSRRVVADRDGESGWLKGQRQMLDLDSIAFAQGGFFMAKKKCDLPDGSYRHLSKGY 477
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
EEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL DN+LLC
Sbjct: 478 EEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFQPDNLLLC 537
Query: 518 APTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTGAGKTNVAVLTILQQ+A +RN DGS +HS YKIVYVAPMKALVAEVVGNLSNRLQ
Sbjct: 538 APTGAGKTNVAVLTILQQIARHRNPKDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQD 597
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
YDVKVRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
Sbjct: 598 YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 657
Query: 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
DNRGPVLESIVARTVRQIETTK++IRLVGLSATLPNYEDVALFLRV+L+KGLFYFDNSYR
Sbjct: 658 DNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYR 717
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPLSQQY+GI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDT
Sbjct: 718 PVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDT 777
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
AL NDTLGRFLKEDS SREIL +HTD+VKSNDLKDLLPYGFAIHHAGMTR DRQLVEDLF
Sbjct: 778 ALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLF 837
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQY
Sbjct: 838 ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY 897
Query: 877 DSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIG 936
DSYGEGII+TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EACNWIG
Sbjct: 898 DSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIG 957
Query: 937 YTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
YTYLY+RMLRNP+LYG+AP+VL DITL ERRADL+HTAATILDRNNLVKYDRKSGYFQV
Sbjct: 958 YTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQV 1017
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
TDLGRIASYYYI+HG+ISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
Sbjct: 1018 TDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1077
Query: 1057 DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1116
DRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
Sbjct: 1078 DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1137
Query: 1117 RGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQEL 1176
RGWAQLAEKALNL KMVTKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+
Sbjct: 1138 RGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEI 1197
Query: 1177 GELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPF 1236
GELIR PKMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF WDD++HGYVEPF
Sbjct: 1198 GELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPF 1257
Query: 1237 WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV 1296
WVIVEDNDGEYILHHEYFMLKKQYI+EDH+LNFTVPIYEPLPPQYFIRVVSD+WLGSQTV
Sbjct: 1258 WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTV 1317
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNP YE+LY+ FKHFNP+QTQVFTVLYN+
Sbjct: 1318 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYESLYKDFKHFNPVQTQVFTVLYNS 1377
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
DDNVLVAAPTGSGKTIC+EFAILRNHQK ++ VMR VY+AP+E+LAKERYRDWE KFG
Sbjct: 1378 DDNVLVAAPTGSGKTICAEFAILRNHQKWPDS-VMRVVYVAPIESLAKERYRDWEKKFGG 1436
Query: 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
GL +RVVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLI
Sbjct: 1437 GLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1496
Query: 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
GGQGGP+LEV+VSRMRYIASQVENKIR+VALSTSLANAKDLGEWIGATSHGLFNFPPGVR
Sbjct: 1497 GGQGGPILEVVVSRMRYIASQVENKIRVVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1556
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPLEIHIQG+DI NFEARMQAMTKPT+TAIVQHAKN KPALVFVP+RK+VRLTAVDL+T
Sbjct: 1557 PVPLEIHIQGIDIANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLIT 1616
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
YS D +K FLL AEE+EPF+D I +EMLK TLR GVGYLHEGLN D+++V+ LFE
Sbjct: 1617 YSGADSGEK-PFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDRDIVTQLFE 1675
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
AG I+VCV++SSMCWGV L+AHLVVVMGTQYYDG+ENA TDYPVTDLLQMMGHASRPL+D
Sbjct: 1676 AGWIQVCVLNSSMCWGVTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVD 1735
Query: 1717 NSGKCVILCHAPRKEYYKKFL--------------------------------------- 1737
NSGKCVILCHAPRKEYYKKFL
Sbjct: 1736 NSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTW 1795
Query: 1738 -----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM 1792
RLTQNPNYYNLQGVSHRHLSDHLSE+VENT+SDLEA KCI IE+DM+L+P N GM
Sbjct: 1796 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGM 1855
Query: 1793 IASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRF 1852
IASYYYISYTTIERFSSS+T KT+MKGLLE+L+SASEYAQLPIRPGEEEVVR+LI+HQRF
Sbjct: 1856 IASYYYISYTTIERFSSSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRF 1915
Query: 1853 SFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1912
SFENPK TDPHVK NALLQAHFSRQ VGGNL LDQ+EVLLSA+RLLQAMVDVISSNGWL
Sbjct: 1916 SFENPKVTDPHVKTNALLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLG 1975
Query: 1913 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 1972
LALLAMEVSQMVTQGMWERDSMLLQLPHF KDLAK+CQENPGKSIETVFDL+EMED+ER+
Sbjct: 1976 LALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDNERQ 2035
Query: 1973 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPV 2032
ELL MSD QLLDIARFCNRFPNID+S+EV DS+NVRAGE +T+ V LERDLEGRTEVGPV
Sbjct: 2036 ELLGMSDSQLLDIARFCNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDLEGRTEVGPV 2095
Query: 2033 YSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMC 2092
+ RYPKAKEEGWWL+VGDTKTN LLAIKRVSLQR+ + KL+F APA+AG+K+Y+LYFMC
Sbjct: 2096 DAPRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRRLKAKLEFDAPADAGRKSYSLYFMC 2155
Query: 2093 DSYMGCDQEYAFTVDVKEAG 2112
DSY+GCDQEY FT+DV G
Sbjct: 2156 DSYLGCDQEYGFTIDVNADG 2175
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525813|ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3689 bits (9565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1817/2180 (83%), Positives = 1972/2180 (90%), Gaps = 78/2180 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSA-------------------KKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL+EKL+K+ K++ D+ + + +G YQPKTKETR
Sbjct: 63 RPPELDEKLEKAKNKKKKKDRDAAADDATAVPSKRRRVQHDSVLSTSDDGVYQPKTKETR 122
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQ QLGGQPL+IVS AADEILAVLKND VKNPDKKK+IEKLLNPIP HVFD
Sbjct: 123 AAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDTVKNPDKKKDIEKLLNPIPGHVFD 182
Query: 165 QLVSIGKLITDYQDAGDAA-GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEED 223
QLVSIGKLITD+Q+ D G+ A +G E LDDD+GVAVEFEEN+DD+EESDLD+VQ+E+
Sbjct: 183 QLVSIGKLITDFQEVVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEE 242
Query: 224 EEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
E++E+ VAEPN SGAMQMGG D+D E G NEGM LNVQDIDAYWLQRKISQAF+QQID
Sbjct: 243 EDDED-VAEPNGSGAMQMGGIDDEDMEEG--NEGMGLNVQDIDAYWLQRKISQAFEQQID 299
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQ CQKLAEEVLKILAEGDDREVENKLL+HL+FDKFSLIKFLLRNRLK+VWCTRLARAQD
Sbjct: 300 PQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD 359
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG- 402
QEER+KIEEEM G +L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ DG
Sbjct: 360 QEEREKIEEEMKG--TELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDK 417
Query: 403 ----RDRRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGY 457
R RRG+ DRD + GWL GQRQ+LDLD++AF QGG FMA +KCDLP+GS R +KGY
Sbjct: 418 ESRDRSRRGVADRDGESGWLKGQRQMLDLDSIAFTQGGFFMAKKKCDLPDGSYRHLSKGY 477
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
EEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL DN+LLC
Sbjct: 478 EEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLC 537
Query: 518 APTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTGAGKTNVAVLTILQQ+A +RN +DGS +HS YKIVYVAPMKALVAEVVGNLSNRLQ
Sbjct: 538 APTGAGKTNVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQE 597
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
YDVKVRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
Sbjct: 598 YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 657
Query: 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
DNRGPVLESIVARTVRQIETTK++IRLVGLSATLPNYEDVALFLRV+L+KGLFYFDNSYR
Sbjct: 658 DNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYR 717
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPLSQQY+GI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRD
Sbjct: 718 PVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDA 777
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
AL NDTLGRFLKEDS SREIL +HTD+VKSNDLKDLLPYGFAIHHAGMTR DRQLVEDLF
Sbjct: 778 ALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLF 837
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQY
Sbjct: 838 ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY 897
Query: 877 DSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIG 936
DSYGEGII+TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EACNWIG
Sbjct: 898 DSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIG 957
Query: 937 YTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
YTYLY+RMLRNP+LYG+AP+VL DITL ERRADL+HTAATILDRNNLVKYDRKSGYFQV
Sbjct: 958 YTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQV 1017
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
TDLGRIASYYYI+HG+ISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
Sbjct: 1018 TDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1077
Query: 1057 DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1116
DRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
Sbjct: 1078 DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1137
Query: 1117 RGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQEL 1176
RGWAQLAEKALNL KM TKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+
Sbjct: 1138 RGWAQLAEKALNLCKMGTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEI 1197
Query: 1177 GELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPF 1236
GELIR PKMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF WDD++HGYVEPF
Sbjct: 1198 GELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPF 1257
Query: 1237 WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV 1296
WVIVEDNDGEYILHHEYFMLKKQYI+EDH+LNFTVPIYEPLPPQYFIRVVSD+WLGSQTV
Sbjct: 1258 WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTV 1317
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRN YE+LY+ FKHFNP+QTQVFTVLYN+
Sbjct: 1318 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSSYESLYKDFKHFNPVQTQVFTVLYNS 1377
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
DDNVLVAAPTGSGKTIC+EFAILRNHQK ++ VMR VY+AP+EALAKERYRDWE KFG
Sbjct: 1378 DDNVLVAAPTGSGKTICAEFAILRNHQKGPDS-VMRVVYVAPVEALAKERYRDWERKFGG 1436
Query: 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
GL +RVVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLI
Sbjct: 1437 GLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1496
Query: 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
GGQGGP+LEV+VSRMRYIASQVENK RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR
Sbjct: 1497 GGQGGPILEVVVSRMRYIASQVENKSRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1556
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPLEIHIQG+DITNFEARMQAMTKPT+TAIVQHAKN KPAL+FVP+RK+VRLTAVD++T
Sbjct: 1557 PVPLEIHIQGIDITNFEARMQAMTKPTYTAIVQHAKNGKPALIFVPTRKHVRLTAVDMIT 1616
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
YS D +K FLL AEE+EPF+D I +EMLK TLR GVGYLHEGLN D ++V+ LFE
Sbjct: 1617 YSGADSGEK-PFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFE 1675
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
AG I+VCV++SSMCWGV L AHLVVVMGTQYYDG+ENA TDYPVTDLLQMMGHASRPL+D
Sbjct: 1676 AGWIQVCVLNSSMCWGVTLLAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVD 1735
Query: 1717 NSGKCVILCHAPRKEYYKKFL--------------------------------------- 1737
NSGKCVILCHAPRKEYYKKFL
Sbjct: 1736 NSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTW 1795
Query: 1738 -----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM 1792
RLTQNPNYYNLQGVSHRHLSDHLSE+VENT+SDLEA KCI IE+DM+L+P N GM
Sbjct: 1796 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGM 1855
Query: 1793 IASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRF 1852
IASYYYISYTTIERFSSS+T KT+MKGLLE+L+SASEYAQLPIRPGEEEVVR+LI+HQRF
Sbjct: 1856 IASYYYISYTTIERFSSSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRF 1915
Query: 1853 SFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1912
SFENPK TDPHVKANALLQAHFSRQ VGGNL LDQ+EVLLSA+RLLQAMVDVISSNGWLS
Sbjct: 1916 SFENPKVTDPHVKANALLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLS 1975
Query: 1913 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 1972
LALLAMEVSQMVTQGMWERDSMLLQLPHF KDLAK+CQENPGKSIETVFDL+EMED+ER+
Sbjct: 1976 LALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDEERQ 2035
Query: 1973 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPV 2032
+LL MSD+QLLDIARFCNRFPNID+S+EV DS+NVRAGE +T+ V LERD EGRTEVGPV
Sbjct: 2036 KLLGMSDLQLLDIARFCNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDFEGRTEVGPV 2095
Query: 2033 YSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMC 2092
+ RYPKAKEEGWWL+VGDTKTN LLAIKRVSLQRK + KL+F APA+AG+K+Y+LYFMC
Sbjct: 2096 DAPRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRKLKAKLEFDAPADAGRKSYSLYFMC 2155
Query: 2093 DSYMGCDQEYAFTVDVKEAG 2112
DSY+GCDQEY FTVDV G
Sbjct: 2156 DSYLGCDQEYGFTVDVNADG 2175
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802492|emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3646 bits (9454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1799/2172 (82%), Positives = 1944/2172 (89%), Gaps = 101/2172 (4%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62
Query: 64 RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL E L + +K+++ ++ ++ ++ EG YQPKTKETR
Sbjct: 63 RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181
Query: 165 QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
QLVSIG+LITD+QD GDAAG AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182 QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241
Query: 225 EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
E+++ + + N SGAMQMGGGIDDDD +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242 EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+V C
Sbjct: 300 QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVCC--------- 350
Query: 345 EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
M G L K +++ ++ + LKDES DG RD
Sbjct: 351 ----------MPQGQLL--------------KRDKRSWRRAFEKRLDVLKDESGGDGDRD 386
Query: 405 RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
RRG VDRDA+ GWL GQRQLLDLD +AF QGG MAN+KC+LP GS R +KGYEE+HVP
Sbjct: 387 RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 446
Query: 464 AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
A+K L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 447 ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 506
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 507 KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 566
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 567 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 626
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 627 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 686
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 687 YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 746
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 747 GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 806
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 807 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 866
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 867 IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 926
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
MLRNP LYGL+ + L DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 927 MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 986
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 987 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1046
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL
Sbjct: 1047 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1106
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1107 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1166
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1167 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1226
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRH 1303
DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLGSQ+VLPVSFRH
Sbjct: 1227 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH 1286
Query: 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363
LILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNPIQTQVFTVLYNTDDNVLVA
Sbjct: 1287 LILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVLVA 1346
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
APTGSGKTIC+EFAILRNHQK SE+ ++RAVYIAP+EALAKERYRDWE KFG+GLGMRVV
Sbjct: 1347 APTGSGKTICAEFAILRNHQKGSES-IVRAVYIAPIEALAKERYRDWERKFGRGLGMRVV 1405
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
ELTGETA DLKLLE+GQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPV
Sbjct: 1406 ELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPV 1465
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543
LEVIVSRMRYIASQ ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH
Sbjct: 1466 LEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1525
Query: 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603
IQGVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVDL TYSS DG
Sbjct: 1526 IQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGG 1585
Query: 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVC 1663
+ FLL EE+EPF+ IQEEML+ATLRHGVGYLHEGL DQEVVS LFEAG I+VC
Sbjct: 1586 ENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVC 1645
Query: 1664 VMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723
VMSSS+CWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI
Sbjct: 1646 VMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1705
Query: 1724 LCHAPRKEYYKKFL--------------------------------------------RL 1739
LCHAPRKEYYKKFL RL
Sbjct: 1706 LCHAPRKEYYKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRL 1765
Query: 1740 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799
TQNPNYYNLQGVSHRHLSDHLSE VENT+SDLEASKC+ IE+DMDLSP N GMIASYYYI
Sbjct: 1766 TQNPNYYNLQGVSHRHLSDHLSESVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYI 1825
Query: 1800 SYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKF 1859
SYTTIERFSSSLT KT+MKGLLE+LASASEYAQ+PIRPGEE+++RRLI+HQRFSFENPK
Sbjct: 1826 SYTTIERFSSSLTSKTKMKGLLEILASASEYAQIPIRPGEEDLIRRLINHQRFSFENPKC 1885
Query: 1860 TDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAME 1919
TDPH+KANALLQAHFSRQ VGGNL LDQ EVLLSA RLLQAMVDVISSNGWL+LALLAME
Sbjct: 1886 TDPHIKANALLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMVDVISSNGWLNLALLAME 1945
Query: 1920 VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 1979
VSQMVTQGMWERDSMLLQLPHF KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD
Sbjct: 1946 VSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 2005
Query: 1980 VQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPK 2039
QLLDIARFCNRFPNID ++EV DSEN+RAG+DITLQV+LERDLEGRTEVG V + RYPK
Sbjct: 2006 SQLLDIARFCNRFPNIDXTYEVLDSENLRAGDDITLQVMLERDLEGRTEVGSVDAPRYPK 2065
Query: 2040 AKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCD 2099
AKEEGWWLVVGDTK+NQLLAIKRV+LQRKS+VKL+FA PAEAG+K+YTLYFMCDSY+GCD
Sbjct: 2066 AKEEGWWLVVGDTKSNQLLAIKRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCD 2125
Query: 2100 QEYAFTVDVKEA 2111
QEY+F+VDV +A
Sbjct: 2126 QEYSFSVDVMDA 2137
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451431|ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3580 bits (9283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1796/2222 (80%), Positives = 1943/2222 (87%), Gaps = 119/2222 (5%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWG+ID ++FGDR
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDAKNFGDRVSHD 62
Query: 64 RPPELEEKLKKSA---------------------KKKKERDPDADAAAASEGTYQPKTKE 102
RPPEL EKL + K++ ++ A +G YQPKTKE
Sbjct: 63 RPPELTEKLNAAKKKKKDREKDRDPLDSGSGQRRNKRRRMMEESVLTATDDGVYQPKTKE 122
Query: 103 TRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHV 162
TRAAYEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND +KN DKKK+IEKLLN IPN V
Sbjct: 123 TRAAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDTLKNVDKKKDIEKLLNTIPNQV 182
Query: 163 FDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDD--MGVAVEFEENDDDEEESDLDMVQ 220
FDQLVSIGKLITD+Q+ G+ G G D D +GVAVEFEEN+DDE+E V
Sbjct: 183 FDQLVSIGKLITDFQEVGEVGGGGGGGGEVDGGLDDDVGVAVEFEENEDDEDEESDLDVV 242
Query: 221 EEDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQ 280
+EDEE+E+DV E N SG MQMGG IDD+D DANEGM+LNVQDIDAYWLQRKIS A++Q
Sbjct: 243 QEDEEDEDDVVEGNGSGGMQMGG-IDDEDME-DANEGMNLNVQDIDAYWLQRKISHAYEQ 300
Query: 281 QIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLAR 340
IDP QCQKLA EVLKILA+ DDREVENKLL+HL++DKFSLIKFLLRNRLK++WCTRLAR
Sbjct: 301 LIDPDQCQKLAGEVLKILADPDDREVENKLLFHLEYDKFSLIKFLLRNRLKILWCTRLAR 360
Query: 341 AQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASD 400
AQDQEER+ IEEEM L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ D
Sbjct: 361 AQDQEERETIEEEMKE-SDLLQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTVGD 419
Query: 401 GGRDRR--------GLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQR 451
G ++R G DRD + GWL GQRQ+LDLD L F+QGGLFMA +KCDLP+GS R
Sbjct: 420 GDKERDRDRDRIRRGAGDRDGESGWLKGQRQMLDLDNLTFEQGGLFMAKKKCDLPDGSYR 479
Query: 452 FTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
KGYEEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL
Sbjct: 480 HLEKGYEEIHVPALKAKPLDPNEKLLKISAMPDWAQPAFKGMTQLNRVQSKVYETALFKP 539
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNL 570
DN+LLCAPTGAGKTNVAVLTILQQ+A +RN DDGS +HS YKIVYVAPMKALVAEVVGNL
Sbjct: 540 DNLLLCAPTGAGKTNVAVLTILQQIARHRNTDDGSIDHSAYKIVYVAPMKALVAEVVGNL 599
Query: 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIID 630
SNRLQ Y+V VRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL+IID
Sbjct: 600 SNRLQDYNVTVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLVIID 659
Query: 631 EIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY 690
EIHLLHDNRGPVLESIVARTVRQIET+K++IRLVGLSATLPNYEDVALFLRV+L KGLFY
Sbjct: 660 EIHLLHDNRGPVLESIVARTVRQIETSKDYIRLVGLSATLPNYEDVALFLRVDLNKGLFY 719
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750
FDNSYRPVPLSQQYIGI +KKPLQRFQLMND+CY KV+ VAGKHQVLIFVHSRKETAKTA
Sbjct: 720 FDNSYRPVPLSQQYIGITIKKPLQRFQLMNDICYRKVLDVAGKHQVLIFVHSRKETAKTA 779
Query: 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810
RAIRD AL +DTLGRFLKEDS SREIL +HTD+VKS+DLKDLLPYGFAIHHAGMTR DRQ
Sbjct: 780 RAIRDAALADDTLGRFLKEDSASREILHTHTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQ 839
Query: 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870
LVEDLF DGH QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGR
Sbjct: 840 LVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGR 899
Query: 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKE 930
AGRPQYDSYGEGII+TGHSEL+YYLSLMNQQLPIESQF+SKLADQLNAEIVLGTVQNAKE
Sbjct: 900 AGRPQYDSYGEGIILTGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAKE 959
Query: 931 ACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL---------------VHTA 975
AC+WIGYTYLY+RMLRNP+LYGLAP+VL DITL ERRADL +HTA
Sbjct: 960 ACHWIGYTYLYVRMLRNPSLYGLAPDVLSRDITLEERRADLFIELLEKGTKSLWTIIHTA 1019
Query: 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI+HGTISTYNEHLKPTMGDIELCRLFSL
Sbjct: 1020 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSL 1079
Query: 1036 SEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSD 1095
SEEFKYVTVRQDEKMELAKLLDRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLS+TSD
Sbjct: 1080 SEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSMTSD 1139
Query: 1096 MVFIT----------------------QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
MVFIT QSAGRLLRALFEIVLKRGWAQLAEKALNL KMV
Sbjct: 1140 MVFITQFIRSGVPLILLFADSCIMFLFQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMV 1199
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
TKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+GELIR PKMGRTLH+F+
Sbjct: 1200 TKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWERYYDLSSQEIGELIRAPKMGRTLHRFI 1259
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL LAAHVQPITRTVL VELTITPDF WDD++HGYVEPFWVIVEDNDGEYILHHEY
Sbjct: 1260 HQFPKLNLAAHVQPITRTVLGVELTITPDFAWDDRMHGYVEPFWVIVEDNDGEYILHHEY 1319
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LKKQYIEEDH+LNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP
Sbjct: 1320 FLLKKQYIEEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1379
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
TELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYN+DDNVLVAAPTGSGKTIC
Sbjct: 1380 TELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTIC 1439
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+EFAILRNHQK ++ VMR VYIAP+EALAKERYRDWE KFG GL ++VVELTGETA DL
Sbjct: 1440 AEFAILRNHQKLPDS-VMRVVYIAPVEALAKERYRDWEKKFGGGLKLKVVELTGETATDL 1498
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493
KLLEKGQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY
Sbjct: 1499 KLLEKGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1558
Query: 1494 IASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553
I+SQ+ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI NFE
Sbjct: 1559 ISSQLENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFE 1618
Query: 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613
ARMQAMTKPT+T+I QHAKN+KPA+VFVP+RK+VRLTAVDL+TYS D +K FLL
Sbjct: 1619 ARMQAMTKPTYTSIAQHAKNKKPAIVFVPTRKHVRLTAVDLITYSGADSGEK-PFLLRSL 1677
Query: 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673
EE+EPFI+ I +EMLK TLR GVGYLHEGLN D ++V+ LFEAG I+VCV+SSSMCWGV
Sbjct: 1678 EELEPFINKISDEMLKVTLREGVGYLHEGLNSLDHDIVAQLFEAGWIQVCVLSSSMCWGV 1737
Query: 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYY 1733
L+AHLVVVMGTQYYDG+ENA TDYPVTDLLQMMGHASRPL+DNSGKCVILCHAPRKEYY
Sbjct: 1738 TLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEYY 1797
Query: 1734 KKFL--------------------------------------------RLTQNPNYYNLQ 1749
KKFL RLTQNPNYYNLQ
Sbjct: 1798 KKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNLQ 1857
Query: 1750 GVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSS 1809
GVSHRHLSDHLSE+VENT+SDLEASKC+ IE+DMDLSP N GMIASYYYISYTTIERFSS
Sbjct: 1858 GVSHRHLSDHLSEMVENTLSDLEASKCVSIEDDMDLSPLNLGMIASYYYISYTTIERFSS 1917
Query: 1810 SLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANAL 1869
SLT KT+MKGLLEVL+SASEYA LPIRPGEEEVVRRLI+HQRFSFENPK TDPHVKANAL
Sbjct: 1918 SLTSKTKMKGLLEVLSSASEYAHLPIRPGEEEVVRRLINHQRFSFENPKVTDPHVKANAL 1977
Query: 1870 LQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW 1929
LQAHFSRQ VGGNL LDQ EVLLSA+RLLQAMVDVISSNGWLS+ALLAMEVSQMVTQGMW
Sbjct: 1978 LQAHFSRQSVGGNLSLDQREVLLSANRLLQAMVDVISSNGWLSMALLAMEVSQMVTQGMW 2037
Query: 1930 ERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFC 1989
ERDSMLLQLPHF KDLAK+CQENPG+SIETVFDL+EMEDDERRELL M+D QLLDIARFC
Sbjct: 2038 ERDSMLLQLPHFTKDLAKKCQENPGRSIETVFDLLEMEDDERRELLNMTDSQLLDIARFC 2097
Query: 1990 NRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVV 2049
NRFPNID+S+E+ D++NVRAG+DITLQV LERDLEG+TEVGPV + RYPKAKEEGWWLVV
Sbjct: 2098 NRFPNIDLSYEILDNDNVRAGDDITLQVTLERDLEGKTEVGPVDAPRYPKAKEEGWWLVV 2157
Query: 2050 GDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVK 2109
GDTKTN LLAIKRVSLQRK + KL+FAAPA+AGKK+Y LYFMCDSYMGCDQEY FT+DVK
Sbjct: 2158 GDTKTNMLLAIKRVSLQRKLKAKLEFAAPADAGKKSYVLYFMCDSYMGCDQEYGFTLDVK 2217
Query: 2110 EA 2111
EA
Sbjct: 2218 EA 2219
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850522|ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3546 bits (9194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1729/2170 (79%), Positives = 1942/2170 (89%), Gaps = 69/2170 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPELEEKLK----------------KSAKKKKERDPDADAAAASEGTYQPKTKETRAAY 107
RP ELE+KLK + +K+++ R+ ++ + YQPKTKETRAAY
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDTANVRQSKRRRLRE-ESVLTDTDDAVYQPKTKETRAAY 121
Query: 108 EAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLV 167
EAMLS+IQQQLGGQPL+IVSGAADEILAVLKND +NP+KK EIEKLLN I NH FDQLV
Sbjct: 122 EAMLSLIQQQLGGQPLSIVSGAADEILAVLKNDTFRNPEKKMEIEKLLNHIENHEFDQLV 181
Query: 168 SIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEE 227
SIGKLITD+Q+ GD+ G A+ E LDDD+GVAVEFEEN++D++ESD DMVQEED+EE+
Sbjct: 182 SIGKLITDFQEGGDSGGG-KADEEEGLDDDLGVAVEFEENEEDDDESDPDMVQEEDDEED 240
Query: 228 EDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQC 287
EP +G MQ+ GI+D D +GDANEG +LNVQDIDAYWLQRKISQA++QQIDPQQC
Sbjct: 241 ---EEPTRTGGMQVDAGINDQD-AGDANEGANLNVQDIDAYWLQRKISQAYEQQIDPQQC 296
Query: 288 QKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEER 347
Q LAEE+LK+LAEGDDR VENKLL HLQF+KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 297 QVLAEELLKVLAEGDDRVVENKLLMHLQFEKFSLVKFLLRNRLKVVWCTRLARAEDQEER 356
Query: 348 KKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRG 407
K+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+ DGGR RR
Sbjct: 357 KRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRRRRD 416
Query: 408 LVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
+ DRD++ GW+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 417 VADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVS 476
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+N+LLCAPTGAGKTN
Sbjct: 477 KK-VDSNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENLLLCAPTGAGKTN 535
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VA+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSG
Sbjct: 536 VAMLTILQQLEMNRNKDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELSG 595
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646
DQ+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+LLIIDEIHLLHDNRGPVLESI
Sbjct: 596 DQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESI 655
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIG
Sbjct: 656 VARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIG 715
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKETAKTA+AIRDTA+ NDTL RF
Sbjct: 716 ISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETAKTAKAIRDTAMANDTLSRF 775
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDSV+RE+LQSH D+VK+ +LK++LPYGFAIHHAG+TRGDR++VE+LF GHVQVLVS
Sbjct: 776 LKEDSVTREVLQSHVDIVKNGELKNILPYGFAIHHAGLTRGDREIVENLFAQGHVQVLVS 835
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIIT
Sbjct: 836 TATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDRHGEGIIIT 895
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+R
Sbjct: 896 GYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVR 955
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYY
Sbjct: 956 NPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY 1015
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI+HGTI+TYNEHLKPTMGDI+L RLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+KE+
Sbjct: 1016 YITHGTIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKET 1075
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LEEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKA
Sbjct: 1076 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKA 1135
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV +RMWSVQTPLRQF+GIPN+ILM LEKKD WERYYDLS QELGELIR PKMG
Sbjct: 1136 LNLSKMVGRRMWSVQTPLRQFHGIPNDILMNLEKKDLVWERYYDLSSQELGELIRSPKMG 1195
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHKF+HQFPKL L+AHVQPITRTVLKVELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1196 RPLHKFIHQFPKLTLSAHVQPITRTVLKVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGE 1255
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL 1306
ILHHEYF+LK+QYI+EDH+LNFTVPI+EPLPPQYF+RVVSDKWLGS+TVLPVSFRHLIL
Sbjct: 1256 KILHHEYFLLKQQYIDEDHTLNFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLIL 1315
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
PEKYPPPTELLDLQPLPVTALRNP YE LYQ FKHFNP+QTQVFTVLYNT+DNVLVAAPT
Sbjct: 1316 PEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPT 1375
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKTIC+EFAILRNHQ+ + MR VYIAPLEA+AKE++R WE KFG+GLG+RVVELT
Sbjct: 1376 GSGKTICAEFAILRNHQEGPD-ATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELT 1434
Query: 1427 GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486
GETA+DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQGGPVLEV
Sbjct: 1435 GETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQGGPVLEV 1494
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546
IVSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+SHGLFNFPPGVRPVPLEIHIQG
Sbjct: 1495 IVSRMRYISSQVNNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQG 1554
Query: 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606
VDI++FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDLM YS MD Q
Sbjct: 1555 VDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSP 1614
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666
FLL EE++PF+ I+EE LK TLRHG+GYLHEGL+ DQE+V+ LFEAG+I+ CVMS
Sbjct: 1615 DFLLGQLEELDPFVSQIREETLKETLRHGIGYLHEGLSSLDQEIVTQLFEAGRIQACVMS 1674
Query: 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
SS+CWG PLTAHLVVVMGTQYYDG+EN+H+DYPV DLLQMMG ASRPLLDN+GKCVI CH
Sbjct: 1675 SSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCH 1734
Query: 1727 APRKEYYKKFL--------------------------------------------RLTQN 1742
AP+KEYYKKFL RL QN
Sbjct: 1735 APQKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQN 1794
Query: 1743 PNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYT 1802
PNYYNLQGVSHRHLSDHLSELVENT+S+LEASKCI IE++M+LSP N GMIASYYYISYT
Sbjct: 1795 PNYYNLQGVSHRHLSDHLSELVENTLSNLEASKCIEIEDEMELSPLNLGMIASYYYISYT 1854
Query: 1803 TIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1862
TIERFSS L+ KT+MKGLLE+L SASEY +PIRPGEE+ VRRLI+HQRFSFENPK TDP
Sbjct: 1855 TIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDP 1914
Query: 1863 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1922
HVKANALLQAHFSRQ +GGNL +DQ +VLLSA+RLLQAMVDVISSNGWL+LALLAMEVSQ
Sbjct: 1915 HVKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQ 1974
Query: 1923 MVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL 1982
MVTQGMWERDSMLLQLPHF KDLAKRCQENPGK+IETVFDLVEMED+ER+ELL+MSD QL
Sbjct: 1975 MVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQL 2034
Query: 1983 LDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKE 2042
LDIARFCNRFPNID+++E+ SE V G+++TLQV+LERD+EGRTEVGPV S RYPK KE
Sbjct: 2035 LDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKE 2094
Query: 2043 EGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2102
EGWWLVVGDTKTNQLLAIKRVSLQ+K++VKLDF P+E G+K+YTLYFMCDSY+GCDQEY
Sbjct: 2095 EGWWLVVGDTKTNQLLAIKRVSLQQKAKVKLDFTVPSEPGEKSYTLYFMCDSYLGCDQEY 2154
Query: 2103 AFTVDVKEAG 2112
+F+VDVK +G
Sbjct: 2155 SFSVDVKGSG 2164
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121998|ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3545 bits (9193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1762/2179 (80%), Positives = 1929/2179 (88%), Gaps = 85/2179 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLV TTD+R RDTHEPTGEPESLWG+IDPRSFGDRA RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVHTTDTRRRDTHEPTGEPESLWGRIDPRSFGDRAHRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RP EL+EK+ K+ KKKERD ++A + EG Y PKTKETRAA
Sbjct: 63 RPSELDEKINKAKGKKKERDALSEAVRGCQAKRRRLREESVLTSTEEGVYHPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPLNIVS AADEILAVLKN++V+ DK+KEIEKLLNPIPN +FDQ
Sbjct: 123 YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNSMFDQF 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESD-LDMVQEEDEE 225
VSIGKLITDYQD GD AG ANG + L+D++GVAVEF+E+++DEE LDMV +E+EE
Sbjct: 183 VSIGKLITDYQDGGDGAGVSVANGDDVLNDNVGVAVEFDEDNEDEEGDSDLDMVPQEEEE 242
Query: 226 EEEDVAEPNA--SGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
EEED A SGAMQMGG IDDD+ G ANEGM+LNVQDIDAYWLQRKISQA++QQID
Sbjct: 243 EEEDDDVVEAGGSGAMQMGGRIDDDEMRG-ANEGMNLNVQDIDAYWLQRKISQAYEQQID 301
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQQCQKLAEEVLK+LAEGDDREVE KLL HLQFDKFS IKFLL NRLK+VWCTRL R++D
Sbjct: 302 PQQCQKLAEEVLKLLAEGDDREVETKLLLHLQFDKFSFIKFLLWNRLKIVWCTRLFRSKD 361
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGR 403
QEERK+IEEEMMG PDLA IL++LHATRATAKERQKNLEKSIREEAR LKDE+ DG R
Sbjct: 362 QEERKQIEEEMMGSDPDLAGILEELHATRATAKERQKNLEKSIREEARWLKDEAGGDGDR 421
Query: 404 DRRGLVDRDADGGWL-GQRQLLDLDTLAFQQG-GLFMANRKCDLPEGSQRFTNKGYEEIH 461
RRGLVDRDA+ GWL GQ QLLDLD++AF+QG GL MAN+KCDLP GS + KGYEE+H
Sbjct: 422 GRRGLVDRDAESGWLKGQPQLLDLDSIAFEQGTGLLMANKKCDLPVGSFKHQKKGYEEVH 481
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K + + PNE+ +KISEMP+WAQPAF+GM QLNRVQS+VY++AL ADNILL APTG
Sbjct: 482 VPALKPRAIPPNERFVKISEMPDWAQPAFEGMQQLNRVQSKVYETALFKADNILLSAPTG 541
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVAVLTILQQ+ALNRN DGSFN++NYKIVYVAPMKALVAEVVGNLSNRLQ Y V+V
Sbjct: 542 AGKTNVAVLTILQQIALNRNLDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQV 601
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641
+ELSGDQT+TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGP
Sbjct: 602 KELSGDQTMTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGP 661
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIVARTVRQIETTKE+IRLVGLSATLPN+EDVALFLRV+LEKGLF+FDNSY+ S
Sbjct: 662 VLESIVARTVRQIETTKENIRLVGLSATLPNFEDVALFLRVDLEKGLFHFDNSYQA---S 718
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
+ RFQLMND+C+EKV+ VAGKHQVLIFVHSRKETAKTARAIRDTAL ND
Sbjct: 719 SSFS--------TRFQLMNDICHEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALAND 770
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL RFL+EDS SREILQ+ +++VKSNDLKDLLPYGFAIHHAGMTRGDR LVE+ F D HV
Sbjct: 771 TLSRFLREDSASREILQTDSELVKSNDLKDLLPYGFAIHHAGMTRGDRHLVEERFRDRHV 830
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQIYNPE+GAWTELSPLD+MQMLGRAGRPQYDSYGE
Sbjct: 831 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEEGAWTELSPLDVMQMLGRAGRPQYDSYGE 890
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GIIITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLG+VQNA+EAC+W+ YTYLY
Sbjct: 891 GIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGSVQNAREACHWLEYTYLY 950
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RM+RNP LYGLAP+VL DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGR
Sbjct: 951 VRMMRNPTLYGLAPDVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGR 1010
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IASYYYI+HGT+STYNEHLKPTMGDIELC LFSLSEEFKYVTVRQDEKMELAKLLD VPI
Sbjct: 1011 IASYYYITHGTMSTYNEHLKPTMGDIELCHLFSLSEEFKYVTVRQDEKMELAKLLDCVPI 1070
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWA+
Sbjct: 1071 PIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAR 1130
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LAEKALNL KM+ KRMWSVQTPLRQF+GI NE LM LEKKD +WERYYDL PQE+GELIR
Sbjct: 1131 LAEKALNLCKMINKRMWSVQTPLRQFHGILNETLMMLEKKDLSWERYYDLKPQEIGELIR 1190
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
FPKMG+TLHKF+HQFPKL LAAHVQPITRTVL+VELTIT DFLWD+ VHGYVEPFWVI+E
Sbjct: 1191 FPKMGKTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITADFLWDENVHGYVEPFWVIME 1250
Query: 1242 DNDGEYILHHEYFMLKKQYIEE----DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297
DN+G+ ILHHEYFMLK+Q ++E D +LNFTV I+EPLPPQYFIRVVSDKWLGSQTVL
Sbjct: 1251 DNNGDSILHHEYFMLKRQSVDEEQVVDPTLNFTVLIHEPLPPQYFIRVVSDKWLGSQTVL 1310
Query: 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTD 1357
P+S RHLILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTD
Sbjct: 1311 PISLRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTD 1370
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
DNVLVAAPT SGKT C+EFAILRNHQK E VMRAVYIAPLE +AKERYRDWE KFGQG
Sbjct: 1371 DNVLVAAPTASGKTTCAEFAILRNHQKGPEC-VMRAVYIAPLEVIAKERYRDWERKFGQG 1429
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
LGMRVVELTGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFI DELHLIG
Sbjct: 1430 LGMRVVELTGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFITDELHLIG 1489
Query: 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
QGGPVLEVIVSRMRYIASQ+ENKIRIVALS+SLANAKDLGEWIGATSHGLFNFPPGVRP
Sbjct: 1490 DQGGPVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRP 1549
Query: 1538 VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597
VPLEIHIQGVDI NF+ARMQAMTKPT+T IV+HAKN KPA+VFVP+RK+V+L AVDLMTY
Sbjct: 1550 VPLEIHIQGVDIANFDARMQAMTKPTYTYIVKHAKNGKPAIVFVPTRKHVQLAAVDLMTY 1609
Query: 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657
SS+DG +K AFLL +EE+EPFI IQEEML+ATL HGVGYLHEGL+ DQEVV LFEA
Sbjct: 1610 SSVDGGEKPAFLL-RSEELEPFIGKIQEEMLRATLYHGVGYLHEGLSSLDQEVVCQLFEA 1668
Query: 1658 GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717
G I+VCVMSSS+CWG+PL+AHLVVVMGTQYYDGQE+A TDYPVTDLLQMMGHASRPL+DN
Sbjct: 1669 GWIQVCVMSSSLCWGLPLSAHLVVVMGTQYYDGQEDARTDYPVTDLLQMMGHASRPLIDN 1728
Query: 1718 SGKCVILCHAPRKEYYKKFL---------------------------------------- 1737
SGKCVILCHAPRKEYYKKFL
Sbjct: 1729 SGKCVILCHAPRKEYYKKFLHEAFPVESRLHHFLHDNFNAEVVAGVIENKQDAVDYLTWT 1788
Query: 1738 ----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMI 1793
RLTQNPNYYNLQGVSHRHLSDHLSELVENT++DLE SKC+ IE+DMDLSP N GMI
Sbjct: 1789 FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTLADLEKSKCVAIEDDMDLSPLNLGMI 1848
Query: 1794 ASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFS 1853
AS YYISYTTIERFSSSLTPKT+MKGLLE+L+SASEY QLPI+PGEEE++RRLI+HQRFS
Sbjct: 1849 ASCYYISYTTIERFSSSLTPKTKMKGLLEILSSASEYVQLPIQPGEEEMLRRLINHQRFS 1908
Query: 1854 FENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSL 1913
FENP++ D HVKAN LLQAHFSRQ VGGNL L+Q EVLLSASRLLQAM+ VISSNGWL+
Sbjct: 1909 FENPRYADAHVKANVLLQAHFSRQSVGGNLALEQREVLLSASRLLQAMIYVISSNGWLNC 1968
Query: 1914 ALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRE 1973
ALLAMEVSQMVTQGMWERDSMLLQLPHF K+LAK+CQENPGKSIETVFDLVEMEDDERRE
Sbjct: 1969 ALLAMEVSQMVTQGMWERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRE 2028
Query: 1974 LLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVY 2033
LLQ+SD Q+LDI RFCN+FPNIDMS+EV D +NVRAGEDITL V L RDLEG TEVGPV
Sbjct: 2029 LLQLSDSQVLDIVRFCNQFPNIDMSYEVMDGDNVRAGEDITLLVTLARDLEG-TEVGPVD 2087
Query: 2034 SNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCD 2093
+ RYPK KEEGWWLVVGDTK+N LLAIKRVSLQRKS+VKL+FAAP +AG+ +YTLYFMCD
Sbjct: 2088 APRYPKPKEEGWWLVVGDTKSNLLLAIKRVSLQRKSKVKLEFAAPTDAGRMSYTLYFMCD 2147
Query: 2094 SYMGCDQEYAFTVDVKEAG 2112
SY+GCDQEY F+VDV EA
Sbjct: 2148 SYLGCDQEYNFSVDVGEAA 2166
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2114 | ||||||
| TAIR|locus:2037375 | 2171 | emb1507 "embryo defective 1507 | 0.830 | 0.808 | 0.760 | 0.0 | |
| TAIR|locus:2059969 | 2172 | AT2G42270 [Arabidopsis thalian | 0.830 | 0.808 | 0.715 | 0.0 | |
| UNIPROTKB|O75643 | 2136 | SNRNP200 "U5 small nuclear rib | 0.703 | 0.696 | 0.597 | 0.0 | |
| UNIPROTKB|E1BH78 | 2136 | LOC100850262 "Uncharacterized | 0.703 | 0.696 | 0.595 | 0.0 | |
| ZFIN|ZDB-GENE-081105-64 | 2134 | si:ch211-251j10.5 "si:ch211-25 | 0.701 | 0.694 | 0.596 | 0.0 | |
| UNIPROTKB|F1LNJ2 | 2139 | Ascc3l1 "Protein Ascc3l1" [Rat | 0.703 | 0.695 | 0.596 | 0.0 | |
| FB|FBgn0263599 | 2142 | l(3)72Ab "lethal (3) 72Ab" [Dr | 0.691 | 0.682 | 0.584 | 0.0 | |
| WB|WBGene00012896 | 2145 | snrp-200 [Caenorhabditis elega | 0.705 | 0.695 | 0.528 | 0.0 | |
| UNIPROTKB|Q9U2G0 | 2145 | Y46G5A.4 "Putative U5 small nu | 0.705 | 0.695 | 0.528 | 0.0 | |
| ASPGD|ASPL0000051297 | 2208 | AN10194 [Emericella nidulans ( | 0.709 | 0.679 | 0.512 | 0.0 |
| TAIR|locus:2037375 emb1507 "embryo defective 1507" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6970 (2458.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 1354/1780 (76%), Positives = 1518/1780 (85%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPXXXXXXXXXXXXXXXRDPDADAAAAS---------------EGTYQPKTKETRAAYE 108
RP D S + YQPKTKETRAAYE
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
AML +IQ+QLGGQP +IVSGAADEILAVLKNDA +NP+KK EIEKLLN I NH FDQLVS
Sbjct: 123 AMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLLNKIENHEFDQLVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITD+Q +GVAV MV+
Sbjct: 183 IGKLITDFQEGGDSGGGRANDDEGLDDD-LGVAVEFEENEEDDEESDPDMVEEDDDEEDD 241
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
EP +G MQ+ +LNVQDIDAYWLQRKISQA++QQIDPQQCQ
Sbjct: 242 ---EPTRTGGMQVDAGINDEDAGDANEGT-NLNVQDIDAYWLQRKISQAYEQQIDPQQCQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
LAEE+LKILAEGDDR VE+KLL HLQ++KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 298 VLAEELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXXXXXXXXX 408
+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+
Sbjct: 358 RIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDV 417
Query: 409 XXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKH 467
W+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 418 ADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSK 477
Query: 468 KPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNV 527
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+NILLCAPTGAGKTNV
Sbjct: 478 K-VDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNV 536
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSGD
Sbjct: 537 AMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGD 596
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
Q+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESIV
Sbjct: 597 QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV 656
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIGI
Sbjct: 657 ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGI 716
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKET+KTARAIRDTA+ NDTL RFL
Sbjct: 717 SVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFL 776
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
KEDSV+R++L SH D+VK++DLKD+LPYGFAIHHAG++RGDR++VE LF GHVQVLVST
Sbjct: 777 KEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVST 836
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
ATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIITG
Sbjct: 837 ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITG 896
Query: 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+RN
Sbjct: 897 YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN 956
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYY 1007
P LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYYY
Sbjct: 957 PTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY 1016
Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESL 1067
I+HGTI+TYNEHLKPTMGDI+L RLFSLS+EFKYVTVRQDEKMELAKLLDRVPIP+KE+L
Sbjct: 1017 ITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL 1076
Query: 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKAL 1127
EEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKAL
Sbjct: 1077 EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL 1136
Query: 1128 NLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGR 1187
NLSKMV KRMWSVQTPLRQF+G+ N+ILM+LEKKD WERYYDLS QELGELIR PKMG+
Sbjct: 1137 NLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGK 1196
Query: 1188 TLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEY 1247
LHKF+HQFPK+ L+AHVQPITRTVL VELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1197 PLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEK 1256
Query: 1248 ILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILP 1307
ILHHEYF+LKKQYI+EDH+L+FTVPI+EPLPPQYF+RVVSDKWLGS+TVLPVSFRHLILP
Sbjct: 1257 ILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILP 1316
Query: 1308 EKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTG 1367
EKYPPPTELLDLQPLPVTALRNP YE LYQ FKHFNP+QTQVFTVLYNT+DNVLVAAPTG
Sbjct: 1317 EKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTG 1376
Query: 1368 SGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG 1427
SGKTIC+EFAILRNH + + MR VYIAPLEA+AKE++R WE KFG+GLG+RVVELTG
Sbjct: 1377 SGKTICAEFAILRNHHEGPDA-TMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTG 1435
Query: 1428 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487
ETA+DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQ GPVLEVI
Sbjct: 1436 ETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVI 1495
Query: 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV 1547
VSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+SHGLFNFPPGVRPVPLEIHIQGV
Sbjct: 1496 VSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGV 1555
Query: 1548 DITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607
DI++FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDLM YS MD Q
Sbjct: 1556 DISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPD 1615
Query: 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667
FLL EE++PF++ I+EE LK TL HG+GYLHEGL+ DQE+V+ LFEAG+I+VCVMSS
Sbjct: 1616 FLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSS 1675
Query: 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727
S+CWG PLTAHLVVVMGTQYYDG+EN+H+DYPV DLLQMMG ASRPLLDN+GKCVI CHA
Sbjct: 1676 SLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHA 1735
Query: 1728 PRKEYYKKFLRLTQNPNYYNLQGVSHRHLS-DHLSELVEN 1766
PRKEYYKKFL P LQ H + + + ++ ++EN
Sbjct: 1736 PRKEYYKKFL-YEAFPVESQLQHFLHDNFNAEVVAGVIEN 1774
|
|
| TAIR|locus:2059969 AT2G42270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6485 (2287.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 1274/1781 (71%), Positives = 1460/1781 (81%)
Query: 4 NLGGG-AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFR 62
NLGGG AE AR KQY Y+ NSSLVL +D R RDTHE +GEPESL G+IDP+SFGDR R
Sbjct: 3 NLGGGGAEEQARLKQYGYKVNSSLVLNSDERRRDTHESSGEPESLRGRIDPKSFGDRVVR 62
Query: 63 GRPPXXXXXXXXXXXXXXXRDPDADAAAAS--------------EGTYQPKTKETRAAYE 108
GRP D A + +G YQPKTKETR A+E
Sbjct: 63 GRPHELDERLNKSKKKKERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
ML +IQQQLGGQPL+IV GAADEILAVLKN++VKN +KK EIEKLLN I + VF Q VS
Sbjct: 123 IMLGLIQQQLGGQPLDIVCGAADEILAVLKNESVKNHEKKVEIEKLLNVITDQVFSQFVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITDY+ +GVA+ MVQ
Sbjct: 183 IGKLITDYEEGGDSLSGKASEDGGLDYD-IGVALECEEDDDESDLD---MVQDEKDEEDE 238
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
V E N +G +Q+ SLNV DIDAYWLQRKISQ ++Q+ID Q+CQ
Sbjct: 239 DVVELNKTGVVQVGVAINGEDARQAKEDT-SLNVLDIDAYWLQRKISQEYEQKIDAQECQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
+LAEE+LKILAEG+DR+VE KLL HLQF+KFSL+KFLL+NRLKVVWCTRLAR +DQEER
Sbjct: 298 ELAEELLKILAEGNDRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRLARGRDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDE-SASXXXXXXXX 407
+IEEEM+GLG +LAAI+ +LHA RATAKER++ EK I+EEA+ L D+ S
Sbjct: 358 QIEEEMLGLGSELAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDDDSGVDGDRGMRD 417
Query: 408 XXXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
WL GQRQ++DL++LAF QGG N KC+LP+ S R K ++E+HVP +
Sbjct: 418 VDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRGKEFDEVHVPWVS 477
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K D NEKL+KIS++PEWAQPAF+GM QLNRVQS+VY +AL ADNILLCAPTGAGKTN
Sbjct: 478 KK-FDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTN 536
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VAVLTIL QL LN N G+FNH NYKIVYVAPMKALVAEVV +LS RL+ + V V+ELSG
Sbjct: 537 VAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSG 596
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESI 646
DQ+LT Q+I+ETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESI
Sbjct: 597 DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESI 656
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIE+TKEHIRLVGLSATLPN +DVA FLRV+L+ GLF FD SYRPVPL QQYIG
Sbjct: 657 VARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIG 716
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPL+RFQLMND+CY+KVVAVAGKHQVLIFVHSRKETAKTARAIRDTA+ NDTL RF
Sbjct: 717 INVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRF 776
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDS SREIL+ ++K+NDLK+LLPYGFAIHHAG+TR DR++VE+ F G++QVL+S
Sbjct: 777 LKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLIS 836
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPE+G W ELSPLD+MQM+GRAGRPQYD GEGIIIT
Sbjct: 837 TATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIIT 896
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+S+L+YYL LMN+QLPIESQF+SKLADQLNAEIVLGT+QNA+EAC+W+GYTYLY+RM+R
Sbjct: 897 GYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVR 956
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYG++P+ L +D+ L ERRADL+H+AATILD+NNL+KYDRKSG+FQVTDLGRIASYY
Sbjct: 957 NPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYY 1016
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YISHGTI+ YNE+LKPTM DIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE+
Sbjct: 1017 YISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKET 1076
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LE+PSAKINVLLQ YIS+LKLEGLSLTSDMV+ITQSAGRLLRA+FEIVLKRGWAQL++KA
Sbjct: 1077 LEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKA 1136
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV KRMWSVQTPL QF GIP EILMKLEK D WERYYDLS QELGELI PKMG
Sbjct: 1137 LNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMG 1196
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHK++HQFPKL LAAHVQPI+R+VL+VELT+TPDF WDDK + YVEPFW+IVEDNDGE
Sbjct: 1197 RPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGE 1256
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL 1306
ILHHEYF+ KK+ I+EDH+LNFTVPI EP+PPQYFIRVVSDKWL S TVLPVSFRHLIL
Sbjct: 1257 KILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLIL 1316
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
PEKYPPPTELLDLQPLPV ALRNP YE LYQ FKHFNP+QTQVFTVLYNT DNV+VAAPT
Sbjct: 1317 PEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPT 1376
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKTIC+EFAILRNH + ++ MR VYIAPLEA+AKE++RDWE KFG+GLG+RVVELT
Sbjct: 1377 GSGKTICAEFAILRNHLEGPDSA-MRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELT 1435
Query: 1427 GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486
GET +DLKLLEKGQIIISTPEKWDALSRRWKQRKY+QQVSLFI+DELHLIGGQGG VLEV
Sbjct: 1436 GETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEV 1495
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546
IVSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+S G+FNFPP VRPVPLEIHI G
Sbjct: 1496 IVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHG 1555
Query: 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606
VDI +FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDL+ YS MD +
Sbjct: 1556 VDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSP 1615
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666
FLL EE+EPF+ I EE LK TLRHG+GYLHEGL+ DQE+V+ LFEAG+I+VCVMS
Sbjct: 1616 DFLLGNLEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMS 1675
Query: 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
SS+CWG PL AHLVVVMGT +YDG+EN+H+DYP+++LLQMMG SRPLLD++GKCVI CH
Sbjct: 1676 SSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCH 1735
Query: 1727 APRKEYYKKFLRLTQNPNYYNLQGVSHRHLS-DHLSELVEN 1766
APRKEYYKKFL P +LQ H + + + ++ ++EN
Sbjct: 1736 APRKEYYKKFL-YEALPVESHLQHFLHDNFNAEVVARVIEN 1775
|
|
| UNIPROTKB|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 4704 (1660.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 904/1513 (59%), Positives = 1160/1513 (76%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1264 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1323
Query: 1339 -FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR ++SE G R VYI
Sbjct: 1324 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-G--RCVYIT 1380
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG IIISTPEKWD LSRRWK
Sbjct: 1381 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK 1440
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
QRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1441 QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1500
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +KP
Sbjct: 1501 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-KKPV 1559
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
+VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +GVG
Sbjct: 1560 IVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1618
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
YLHEGL+ ++ +V LF +G I+V V S S+CWG+ + AHLV++M TQYY+G+ +A+ D
Sbjct: 1619 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVD 1678
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHRHLS 1757
YP+ D+LQM+GHA+RPL D+ G+CVI+C +K+++KKFL P +L H H +
Sbjct: 1679 YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL-YEPLPVESHLDHCMHDHFN 1737
Query: 1758 DHLSELVENTISD 1770
+E+V TI +
Sbjct: 1738 ---AEIVTKTIEN 1747
|
|
| UNIPROTKB|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 4700 (1659.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 901/1513 (59%), Positives = 1159/1513 (76%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
E+VLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1264 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1323
Query: 1339 -FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR + SE G R VYI
Sbjct: 1324 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSE-G--RCVYIT 1380
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG +I+STPEKWD LSRRWK
Sbjct: 1381 PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWK 1440
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
QRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1441 QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1500
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +KP
Sbjct: 1501 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-KKPV 1559
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
+VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +GVG
Sbjct: 1560 IVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1618
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
YLHEGL+ ++ +V LF +G I+V V S S+CWG+ + AHLV++M TQYY+G+ +A+ D
Sbjct: 1619 YLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHAYVD 1678
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHRHLS 1757
YP+ D+LQM+GHA+RPL D+ G+CVI+C +K+++KKFL P +L H H +
Sbjct: 1679 YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL-YEPLPVESHLDHCMHDHFN 1737
Query: 1758 DHLSELVENTISD 1770
+E+V TI +
Sbjct: 1738 ---AEIVTKTIEN 1747
|
|
| ZFIN|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 4694 (1657.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 904/1515 (59%), Positives = 1158/1515 (76%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ ++ I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 257 LHPRDIDAFWLQRQLSRFYNDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 313
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R +++CT LA AQ + E++KI +M DL+ +L QL T KE
Sbjct: 314 FDFIKVLRQHRRMILYCTMLASAQSEAEKEKIINKMEA-DQDLSKVLYQLQETE---KED 369
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + + + RQLLDL+ L F QG FM
Sbjct: 370 IIREERSRRERMRKSRVDDLESMDIDHGES---------VSSRQLLDLEDLTFTQGSHFM 420
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E L+ I ++P++AQ F+G LNR
Sbjct: 421 ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDEETLVGIEKLPKYAQAGFEGFKSLNR 480
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS+++K+ + + +N+L+CAPTGAGKTNVA++ +L+++ + N DG+ N +++KI+Y+AP
Sbjct: 481 IQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAP 540
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 541 MRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER 600
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLES++ART+R +E T+E +RL+GLSATLPNYEDVA
Sbjct: 601 TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT 660
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
LRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 661 CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 720
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 721 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 780
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 781 IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 840
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYDS GEGI+IT H EL+YYLSL+NQQLPIESQ V KLAD LNA
Sbjct: 841 LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNA 900
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GYTYLY+RMLRNP LYG++ + D L RR DLVHTAAT+
Sbjct: 901 EIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSIDPLLERRRMDLVHTAATV 960
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++NNLVKYD++SG FQVTDLGRIAS++YI+H +I TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 961 LEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE 1020
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQAYISQLKLEG +L +DMV+
Sbjct: 1021 FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY 1080
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW +PLRQF +P E++ K+
Sbjct: 1081 VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI 1140
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VHQFPKL LA H+QPITR+ LKVELT
Sbjct: 1141 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT 1200
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WDDK+HG E FW++VED D E +LHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1201 ITPDFQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP 1260
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIR+ SD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1261 PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNGAFESLYQN 1320
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR +E G R VYI P
Sbjct: 1321 FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAE-G--RCVYITP 1377
Query: 1399 LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458
+EALA++ + DW KF + L +VV LTGET+ DLKLL KG II+STP+KWD LSRRWKQ
Sbjct: 1378 MEALAEQVFLDWHQKFQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ 1437
Query: 1459 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG 1518
RK VQ VSLFIIDE+HLIGG GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1438 RKNVQNVSLFIIDEVHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 1497
Query: 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578
W+G ++ FNF P VRPVPLE+HIQG ++++ + R+ +M KP + AI++H+ + KP L
Sbjct: 1498 HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPS-KPVL 1556
Query: 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638
VFVPSR+ RLTA+D++T+ + D + FL +++ PF++N+ + LK TL +GVGY
Sbjct: 1557 VFVPSRRQTRLTAIDILTFCAADVVPQR-FLHSTEKDLVPFMENLSDVTLKETLSNGVGY 1615
Query: 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY 1698
LHEGL+ T++ +V LF +G I+V V S S+CWG ++AHLV+VM TQYY+G+ +A+ DY
Sbjct: 1616 LHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDY 1675
Query: 1699 PVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHR-H-L 1756
P+ D+LQM+G A+RPL D+ G+CVI+C +K+++KKFL Y L SH H L
Sbjct: 1676 PIYDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFL-------YEPLPVESHLDHCL 1728
Query: 1757 SDHLS-ELVENTISD 1770
DH + E+V T+ +
Sbjct: 1729 HDHFNAEIVTKTVEN 1743
|
|
| UNIPROTKB|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 4688 (1655.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 904/1516 (59%), Positives = 1159/1516 (76%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDK---VHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
ITPDF WD+K VHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++E
Sbjct: 1204 ITPDFQWDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE 1263
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEAL 1335
PLPPQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+L
Sbjct: 1264 PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL 1323
Query: 1336 YQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV 1394
YQ F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR + SE G R V
Sbjct: 1324 YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSE-G--RCV 1380
Query: 1395 YIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
YI P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG IIISTPEKWD LSR
Sbjct: 1381 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSR 1440
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514
RWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NA
Sbjct: 1441 RWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA 1500
Query: 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574
KD+ W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +
Sbjct: 1501 KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-K 1559
Query: 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634
KP +VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +
Sbjct: 1560 KPVIVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1618
Query: 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694
GVGYLHEGL+ ++ +V LF +G I+V V S S+CWG+ + AHLV++M TQYY+G+ +A
Sbjct: 1619 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHA 1678
Query: 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHR 1754
+ DYP+ D+LQM+GHA+RPL D+ G+CVI+C +K+++KKFL P +L H
Sbjct: 1679 YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL-YEPLPVESHLDHCMHD 1737
Query: 1755 HLSDHLSELVENTISD 1770
H + +E+V TI +
Sbjct: 1738 HFN---AEIVTKTIEN 1750
|
|
| FB|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 4561 (1610.6 bits), Expect = 0., Sum P(4) = 0.
Identities = 871/1491 (58%), Positives = 1131/1491 (75%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
D Q A +VLKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA A
Sbjct: 283 DAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASA 342
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
Q ER++I E+M G LA IL QL T K + E+ ++R K ++
Sbjct: 343 QTDSERQRIREKMRG-NSALAKILRQLD----TGKSEDQ--EEGEARGSKRGKGDAEDGG 395
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+H
Sbjct: 396 AAAAGQVA---------GVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVH 446
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K P D NE+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTG
Sbjct: 447 VPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTG 506
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+++++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V
Sbjct: 507 AGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTV 566
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
EL+GD LTR+QI TQ+IV TPEKWDIITRK G+RT+ LV+ RGP
Sbjct: 567 SELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGP 626
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLE++VART+R IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L
Sbjct: 627 VLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLE 686
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE D
Sbjct: 687 QQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQD 746
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TLG FLKE S S E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+
Sbjct: 747 TLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHI 806
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GE
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGE 866
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL++YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLY
Sbjct: 867 GILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLY 926
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
IRMLRNP LYG++ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGR
Sbjct: 927 IRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGR 986
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS+YY++H T+ TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPI
Sbjct: 987 IASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPI 1046
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KES+EE SAK+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQ
Sbjct: 1047 PIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQ 1106
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KM+ +RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR
Sbjct: 1107 LADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIR 1166
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PK+G+T+HKFVHQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++E
Sbjct: 1167 VPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIE 1226
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D D E ILHHE+F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSF
Sbjct: 1227 DVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSF 1286
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNV 1360
RHLILPEK PPTELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV
Sbjct: 1287 RHLILPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENV 1346
Query: 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420
V APTGSGK +EFAI+R S+ R VY+ EALA + DW KFG L +
Sbjct: 1347 FVGAPTGSGKMTIAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFGS-LDI 1402
Query: 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480
+VV+LTGET DLKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+
Sbjct: 1403 KVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEE 1462
Query: 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL 1540
GPVLE++ SRMRYI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PL
Sbjct: 1463 GPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPL 1522
Query: 1541 EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600
E+HIQG ++T+ R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++
Sbjct: 1523 ELHIQGYNVTHNATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAAS 1581
Query: 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
D Q + F E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G +
Sbjct: 1582 DL-QPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAV 1640
Query: 1661 KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720
+V V+S +CWG+ ++AHLV++M TQ+Y+G+ +++ DYP+TD+LQM+G A+RP D K
Sbjct: 1641 QVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAK 1700
Query: 1721 CVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHRHLSDHLS-ELVENTISD 1770
CV++C + +K+++KKF+ P +L HR + DH + E+V TI +
Sbjct: 1701 CVLMCQSSKKDFFKKFIN-EPLPIESHLD---HR-MHDHFNAEVVTKTIEN 1746
|
|
| WB|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 4177 (1475.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 801/1517 (52%), Positives = 1087/1517 (71%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDN 1359
RHLILPEKYPPPTELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419
V+V AP GSGKT +E A+LR+ + E +AVYI P+E +A + Y DW+ + +G
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIG 1396
Query: 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
+V LTGE MDLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG
Sbjct: 1397 HTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGAS 1456
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP 1539
G V EV+ SR RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVP
Sbjct: 1457 NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVP 1516
Query: 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNE-KPALVFVPSRKYVRLTAVDLMTY 1597
L++ I+ ++++ +R AM +P + AI +HA K E KPALVFVP R+ R AV L+T
Sbjct: 1517 LDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTM 1576
Query: 1598 SSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
+ DG K L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE
Sbjct: 1577 ALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFE 1636
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
+ I+VCV+ MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD
Sbjct: 1637 SNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILD 1696
Query: 1717 NSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHRHLSDHL-SELVENTISDLEASK 1775
+ KCV++C ++ YYKKFL P +L H H + + ++ +EN ++
Sbjct: 1697 SDAKCVVMCQTSKRAYYKKFL-CDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLT 1755
Query: 1776 CIIIEEDMDLSPSNHGM 1792
++ M +P+ + +
Sbjct: 1756 WTLLYRRMTQNPNYYNL 1772
|
|
| UNIPROTKB|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 4177 (1475.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 801/1517 (52%), Positives = 1087/1517 (71%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDN 1359
RHLILPEKYPPPTELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419
V+V AP GSGKT +E A+LR+ + E +AVYI P+E +A + Y DW+ + +G
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIG 1396
Query: 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
+V LTGE MDLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG
Sbjct: 1397 HTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGAS 1456
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP 1539
G V EV+ SR RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVP
Sbjct: 1457 NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVP 1516
Query: 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNE-KPALVFVPSRKYVRLTAVDLMTY 1597
L++ I+ ++++ +R AM +P + AI +HA K E KPALVFVP R+ R AV L+T
Sbjct: 1517 LDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTM 1576
Query: 1598 SSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
+ DG K L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE
Sbjct: 1577 ALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFE 1636
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
+ I+VCV+ MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD
Sbjct: 1637 SNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILD 1696
Query: 1717 NSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHRHLSDHL-SELVENTISDLEASK 1775
+ KCV++C ++ YYKKFL P +L H H + + ++ +EN ++
Sbjct: 1697 SDAKCVVMCQTSKRAYYKKFL-CDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLT 1755
Query: 1776 CIIIEEDMDLSPSNHGM 1792
++ M +P+ + +
Sbjct: 1756 WTLLYRRMTQNPNYYNL 1772
|
|
| ASPGD|ASPL0000051297 AN10194 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 4016 (1418.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 782/1527 (51%), Positives = 1069/1527 (70%)
Query: 260 LNVQDIDAYWLQRKISQAF-DQQIDPQQCQKLAEEVLKILAEGDDR---EVENKLLYHLQ 315
++ +DIDAYWLQR+I A+ D I ++ + E + +G R +VEN L+
Sbjct: 297 VSARDIDAYWLQRQIGAAYSDAHIQQEKATQALEIMEGKTEDGSPRSLRDVENDLMELFD 356
Query: 316 FDKFSLIKFLLRNRLKVVWCTRLAR-AQDQEERKKIEEEMMGLGPDLAAILDQLHATRAT 374
+D L+ L+ NR KVVW TR R A+D + R +E EM+ G ILD++ +
Sbjct: 357 YDFPDLVAKLVTNRDKVVWTTRWRRVAEDADARNLVESEMVEAGH--RGILDEIRGKTVS 414
Query: 375 AKERQKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQG 434
EK I+ + + A L ++L++L+ L F QG
Sbjct: 415 RDNDSGRPEKRIKMDLMDVDLPKAPAAAEEKKTADGGLVRG--LQPKRLINLENLVFHQG 472
Query: 435 GLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMT 494
M N LP+GS + T KGYEEIHVP K K +P E+ + ISE+PEWA+ F
Sbjct: 473 NHLMTNPNVKLPQGSTKRTFKGYEEIHVPQPKSKQ-EPGERKVAISELPEWARIGFGDAK 531
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD-GSFNHSNYKI 553
+LNR+Q++ Y SA N+L+CAPTG+GKTNVA+L+IL+++ NRN G ++KI
Sbjct: 532 ELNRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKI 591
Query: 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITR 613
VY++P+KALV E V N RL Y +KV EL+GD+ LT+QQI ETQ+IVTTPEK+D+ITR
Sbjct: 592 VYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITR 651
Query: 614 KSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
K+ + +YT+LV+ RGPV+ESIV+RT+RQ+E T + +R+VGLSATLPNY
Sbjct: 652 KASETSYTKLVRLIIIDEIHLLHDERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNY 711
Query: 674 EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG- 732
DVA FLRV+ KGLF+FD SYRP PL Q++IG+ KKP+++ ++MND+CY KV+ G
Sbjct: 712 RDVASFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPIKQLKIMNDICYNKVIEHVGQ 771
Query: 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
++Q+LIFVHSRKETAKTA+ +RD ALE +T+G+ LK DS SR IL + V LKD
Sbjct: 772 NRNQMLIFVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRAILAEEAESVNDAALKD 831
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
+LPYGF IHHAG++ DR V+ LF DG +QVLV TATLAWGVNLPAHTVIIKGTQ+Y+P
Sbjct: 832 ILPYGFGIHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSP 891
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSK 911
EKG+W ELSP D++QMLGRAGRPQYD+YGEGIIIT +E++YYLSLMNQQLPIESQ VSK
Sbjct: 892 EKGSWVELSPQDVLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSK 951
Query: 912 LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL 971
LAD +NAEIVLG ++ E +W+GYTYL++RMLR+P LY + + +D L ++R DL
Sbjct: 952 LADNMNAEIVLGNIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGADYENDD-ALEQKRVDL 1010
Query: 972 VHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031
VH+AA +L++ LVKYD+K+G Q T+LGRIAS+YYI H ++ TYN+HL+P++G+IEL R
Sbjct: 1011 VHSAAVLLEKAGLVKYDKKTGRLQSTELGRIASHYYIGHNSMLTYNQHLQPSIGNIELFR 1070
Query: 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
+F+LS+EFKY+ VRQDEK+ELAK+L RVP+PVKE ++EP AKINVLLQAYIS+LKLEGL+
Sbjct: 1071 IFALSDEFKYIPVRQDEKLELAKMLGRVPVPVKEGIDEPHAKINVLLQAYISRLKLEGLA 1130
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
L +D+V++TQSAGR+LRALFEI L+RGWA +A+ AL+L KM +RMW +PLRQF P
Sbjct: 1131 LMADLVYVTQSAGRILRALFEICLRRGWASVAKNALDLCKMAERRMWPTMSPLRQFPRCP 1190
Query: 1152 NEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRT 1211
+IL K E+ D W Y+DL P +GEL+ P+ G+T+ V +FP+L + A VQPITR+
Sbjct: 1191 RDILQKSERIDVPWGSYFDLDPPRMGELLGMPRAGKTVCDLVSKFPRLEVQAQVQPITRS 1250
Query: 1212 VLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEED---HSLN 1268
+L+VELTITP+F+WD+++HG + FW++VED DGE IL H+ F+L+K Y E + H +
Sbjct: 1251 MLRVELTITPNFVWDEELHGTAQDFWIMVEDCDGEEILFHDQFVLRKDYAESEMNEHLVE 1310
Query: 1269 FTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALR 1328
FTVPI EP+PP YFI +VSD+W+ S+T + VSF+ LILPE++PP T LLD+Q PV AL+
Sbjct: 1311 FTVPITEPMPPNYFISLVSDRWMHSETRIAVSFQKLILPERFPPHTPLLDMQRAPVKALK 1370
Query: 1329 NPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388
Y+ LY +++FN IQTQ F L+ +DDNV + APTGSGKT+C+E AILR H ++
Sbjct: 1371 RDEYQRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPTGSGKTVCAELAILR-HWAKEDS 1429
Query: 1389 GVMRAVYIAPLEALAKERYRDWEIKF-GQGLGMRVVELTGETAMDLKLLEKGQIIISTPE 1447
G RAVY+AP + L R DW+ + G G + +LTGE DLK+L ++++TP
Sbjct: 1430 G--RAVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAKLTGEMTADLKILAGSDLVLATPT 1487
Query: 1448 KWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507
+WD LSR+W++RK V+ V LF+ DELH++GG GG V EV+VSRM IA Q E+ +RIV L
Sbjct: 1488 QWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGYVYEVVVSRMHSIALQTESGMRIVGL 1547
Query: 1508 STSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567
S L+NA+D+GEWIGA+ H ++NF P RPVPLE+HIQ I +F + M AM +P + +I
Sbjct: 1548 SVPLSNARDIGEWIGASKHTIYNFSPHARPVPLELHIQSFSIPHFPSLMLAMARPAYLSI 1607
Query: 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEM 1627
+Q + +KPAL+FVP+RK R TA+DL+T S+D D+ FL EE++P + + E
Sbjct: 1608 LQLSA-DKPALIFVPNRKQTRATAIDLLTACSIDDDE-DRFLHADIEELQPLLGRVHERT 1665
Query: 1628 LKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687
L +L HG+GY HE L++TD+ +VS L+ G I+V + S +CW + LT HLVVVMGTQ+
Sbjct: 1666 LAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQVVIASRDVCWELNLTGHLVVVMGTQF 1725
Query: 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYYN 1747
++G+E+ + DYP++++LQM G ASRP D G+ V++ ++EYYKKFL P +
Sbjct: 1726 FEGREHRYIDYPISEILQMFGKASRPGQDKVGRGVLMVPTVKREYYKKFLNEAL-PVESH 1784
Query: 1748 LQGVSHRHLSDHLSELVENTISDLEAS 1774
LQ H ++E+ + TI+ + S
Sbjct: 1785 LQLYMH---DAFVTEISQGTIASTQDS 1808
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F1NTD6 | ASCC3_CHICK | 3, ., 6, ., 4, ., 1, 2 | 0.4269 | 0.8514 | 0.8141 | yes | no |
| Q9U2G0 | U520_CAEEL | 3, ., 6, ., 4, ., 1, 3 | 0.4997 | 0.9772 | 0.9631 | yes | no |
| P32639 | BRR2_YEAST | 3, ., 6, ., 4, ., 1, 3 | 0.3817 | 0.9607 | 0.9389 | yes | no |
| O75643 | U520_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.5671 | 0.9763 | 0.9662 | yes | no |
| Q9VUV9 | U520_DROME | 3, ., 6, ., 4, ., 1, 3 | 0.5591 | 0.9791 | 0.9663 | yes | no |
| Q9UT24 | BRR2_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.4619 | 0.9697 | 0.9420 | yes | no |
| Q55CI8 | HELCL_DICDI | 3, ., 6, ., 4, ., - | 0.4706 | 0.9801 | 0.9262 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.946 |
| 3rd Layer | 3.6.4 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2114 | |||
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 0.0 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-129 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 1e-120 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 1e-110 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 1e-108 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-107 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 1e-88 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 3e-79 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 4e-45 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 3e-44 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 1e-43 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 2e-41 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 6e-37 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-35 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 8e-35 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-34 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 1e-31 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-24 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-23 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-21 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-21 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-19 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 4e-19 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 1e-17 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 4e-17 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-16 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 2e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-14 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 3e-14 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-12 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 1e-11 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 5e-11 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 3e-10 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 3e-10 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 4e-10 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 3e-09 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-08 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-08 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-07 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-07 | |
| COG1203 | 733 | COG1203, COG1203, CRISPR-associated helicase Cas3 | 2e-07 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-06 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-06 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-06 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 8e-06 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 9e-06 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-05 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 2e-05 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 4e-05 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 7e-05 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 7e-04 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 8e-04 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 0.001 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.001 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.001 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 620 bits (1601), Expect = 0.0
Identities = 259/808 (32%), Positives = 379/808 (46%), Gaps = 56/808 (6%)
Query: 459 EIHVPA--MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILL 516
EI + + + ++++++I + + N Q V K LS N+L+
Sbjct: 1 EIFMKEEKLATSKVKLDDRVLEILKGDGIDE-------LFNPQQEAVEKGLLSDE-NVLI 52
Query: 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTG+GKT +A+L IL + K+VY+ P+KAL E S RL+
Sbjct: 53 SAPTGSGKTLIALLAILS----------TLLEGGGKVVYIVPLKALAEEKYEEFS-RLEE 101
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
++V +GD L +++ +IVTTPEK D +TRK + + V L++IDEIHLL
Sbjct: 102 LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLG 159
Query: 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
D RGPVLESIVAR R E IR+VGLSATLPN E+VA +L L + +
Sbjct: 160 DRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLR 215
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754
R VP ++G KK L+++L E V+ ++A QVL+FVHSRKE KTA+ +R
Sbjct: 216 RGVPYVGAFLGADGKKKTWP-LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
+ + D + IL T + +L +L+ G A HHAG+ R DRQLVED
Sbjct: 275 IKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
F G ++VLVST TLA GVNLPA TVIIK T+ Y+P+ G ++ LD++QM GRAGRP
Sbjct: 335 AFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRP 393
Query: 875 QYDSYGEGIII-TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
YD YGE II+ T H EL Y L Q P SKL D+LN L V + +A +
Sbjct: 394 GYDDYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVS 451
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ T Y R NP YG + +L N + D
Sbjct: 452 WLELTDFYERTFYNPQTYGEGMLREEILASLRYLEE-------------NGLILDADWEA 498
Query: 994 FQVTDLGRIASYYYISHGTISTYNE---HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
T+LG++ S YI + + + L +I L L SL+ + + +R+ E
Sbjct: 499 LHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESS 558
Query: 1051 ELAK--LLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
EL L ++ + E L+E + + N+LLQA + +L +D I + G
Sbjct: 559 ELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPG 618
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERY 1168
L I W L+ L L K + + L + +++E E
Sbjct: 619 DLLRIAETAEW--LSADLLALGKAAERLAKILGLGLHVLR-KLEILSLRIEYG-VRSEEL 674
Query: 1169 YDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDK 1228
+L +R K+ +K + + A + P+T ++ I D
Sbjct: 675 LELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVL 734
Query: 1229 VHGYVEPFWVIVEDNDGEYILHHEYFML 1256
+ G F + V + D Y+LH E +L
Sbjct: 735 LSGRAYFFSIEVRELDLLYVLHEEALIL 762
|
Length = 766 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-129
Identities = 162/310 (52%), Positives = 214/310 (69%), Gaps = 7/310 (2%)
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
T+LGRIAS+YYI + T+ T+N LKP +L + S + EF+ + VR++EK EL KLL
Sbjct: 2 TELGRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKLL 61
Query: 1057 DRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
+RVPIPVK +++P AK+N+LLQAY+S+LKL SL SD+ +I Q+AGRLLRALFEI L
Sbjct: 62 ERVPIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIAL 121
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA-WERYYDLSPQ 1174
+GW A AL LSKM+ +R+W +PLRQ IP E+L KLEKK + E DL P+
Sbjct: 122 SKGWLSPALNALELSKMIEQRLWPSDSPLRQLPHIPPEVLKKLEKKGISSLEDLMDLDPE 181
Query: 1175 ELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPITRTV-LKVELTITPDFLWDDKVHGY 1232
ELGEL+ PK G+ + +FV++FP+L + A VQPITR V L+VE+T+T DF WD++ HG
Sbjct: 182 ELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREVSLRVEVTLTRDFEWDERFHGK 241
Query: 1233 VEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPI-YEPLPPQYFIRVVSDKWL 1291
E FW++VED+D +L E F L K+ E H L FTVP+ PLPPQ IR+VSD WL
Sbjct: 242 SEGFWIVVEDSDNNELLAIERFTLNKKKDE--HELEFTVPLSGGPLPPQLTIRLVSDSWL 299
Query: 1292 GSQTVLPVSF 1301
G +PVS
Sbjct: 300 GCDQEVPVSL 309
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-120
Identities = 139/313 (44%), Positives = 203/313 (64%), Gaps = 4/313 (1%)
Query: 993 YFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052
TDLGRIASYYYIS+ TI T+NE LKP M +L R+ S+S EF + VR +E + L
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 1053 AKLLDRVPIPVK-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111
+L +++PI ++ SL++P K N+LLQA++S+LKL +L SD V++ Q+AGRLL+A+
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD-FAWERYYD 1170
+I L+RGW A ALNLS+M+ + +W +PL Q +P EIL +LEKK + E +
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKKVLSLEDLLE 180
Query: 1171 LSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKV 1229
L +E GEL+ G ++K + + PKL + ++PITRTVL VE+T+T D WDD++
Sbjct: 181 LEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEI 240
Query: 1230 HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
HG E +W+++ D+DG +LH E F L K+ + E+ L+FT P E QY +R+VSD
Sbjct: 241 HGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDS 299
Query: 1290 WLGSQTVLPVSFR 1302
+LG P+SF
Sbjct: 300 YLGCDQEYPLSFD 312
|
Length = 312 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 351 bits (904), Expect = e-110
Identities = 141/328 (42%), Positives = 196/328 (59%), Gaps = 20/328 (6%)
Query: 1784 DLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVV 1843
+ P++ G IASYYYISYTTI F+ L PK K LL +L+ +SE+ Q+P+R E+ ++
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 1844 RRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMV 1902
L ENP DPHVKAN LLQAH SR ++ L+ D VL +A RLLQAMV
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 1903 DVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFD 1962
D+ GWLS AL A+ +SQM+ Q +W DS LLQLPH +++ KR ++ K + ++ D
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEK---KKVLSLED 177
Query: 1963 LVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERD 2022
L+E+ED+ER ELL + D + + + +R P +++ ++ G ++TL V L D
Sbjct: 178 LLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWD 237
Query: 2023 LEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR---VKLDFAAPA 2079
E K+EGWWLV+GD+ N+LL I+R SL +K+ VKLDF APA
Sbjct: 238 DE-------------IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPA 284
Query: 2080 EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107
G YTL + DSY+GCDQEY + D
Sbjct: 285 TEGNYQYTLRLVSDSYLGCDQEYPLSFD 312
|
Length = 312 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-108
Identities = 134/313 (42%), Positives = 197/313 (62%), Gaps = 8/313 (2%)
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
T+LGRIASYYYIS+ TI T+N+ LKPT ++ + S + EFK + VR +EK EL +L
Sbjct: 2 TELGRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNELN 61
Query: 1057 DRVPIPVKESLEE-PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
RVPIPVKE + + P AK+N+LLQA++S+L L L SD+ +I Q+A R+LRAL +I L
Sbjct: 62 KRVPIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIAL 121
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGI-PNEILMKLEKKD--FAWERYYDL 1171
+GW + A AL+LS+MV +R+W +PL+Q ++ KLE KD ++E D+
Sbjct: 122 SKGWLRTALNALDLSQMVVQRLWEDSDSPLKQLPHFLIEDVYDKLELKDGSRSFELLLDM 181
Query: 1172 SPQELGELI-RFPKMGRTLHKFVHQFPKLILAAHVQPITRTV-LKVELTITPDFLWDDKV 1229
+ ELGE + R P GR +++ + +FPK+ + A V PITR + L+VEL ITP F WD
Sbjct: 182 NAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVELEITPVFAWDLPR 241
Query: 1230 -HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSD 1288
G E +W++V D+D +L + L+K+ + L+FTVP+ EP P Y + ++SD
Sbjct: 242 HKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKSNEVKLDFTVPLSEPGPENYTVYLISD 301
Query: 1289 KWLGSQTVLPVSF 1301
+LG + S
Sbjct: 302 SYLGCDQEVSFSL 314
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 345 bits (887), Expect = e-107
Identities = 123/321 (38%), Positives = 193/321 (60%), Gaps = 21/321 (6%)
Query: 1791 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1850
G IAS+YYI Y T+E F++SL P T +K LLE+L+SASE+ ++P+R E++ +++L+
Sbjct: 5 GRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKLLERV 64
Query: 1851 RFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVDVISSNG 1909
++P DPH K N LLQA+ SR ++ +L D +L +A RLL+A+ ++ S G
Sbjct: 65 PIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIALSKG 124
Query: 1910 WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDD 1969
WLS AL A+E+S+M+ Q +W DS L QLPH ++ K+ ++ K I ++ DL++++ +
Sbjct: 125 WLSPALNALELSKMIEQRLWPSDSPLRQLPHIPPEVLKKLEK---KGISSLEDLMDLDPE 181
Query: 1970 ERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDS-ENVRAGEDITLQVVLERDLEGRTE 2028
E ELL + Q DIA F NRFP +++ EVQ V + ++V L RD E
Sbjct: 182 ELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREV----SLRVEVTLTRDFE---- 233
Query: 2029 VGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRK-SRVKLDFAAPAEAGKKT-- 2085
+ R+ K EG+W+VV D+ N+LLAI+R +L +K +L+F P G
Sbjct: 234 ----WDERFHG-KSEGFWIVVEDSDNNELLAIERFTLNKKKDEHELEFTVPLSGGPLPPQ 288
Query: 2086 YTLYFMCDSYMGCDQEYAFTV 2106
T+ + DS++GCDQE ++
Sbjct: 289 LTIRLVSDSWLGCDQEVPVSL 309
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 1e-88
Identities = 133/327 (40%), Positives = 192/327 (58%), Gaps = 28/327 (8%)
Query: 1791 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1850
G IASYYYISY TIE F+ SL P T +K +LE+L+ ASE+ ++P+R E++ + L
Sbjct: 5 GRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNELNKRV 64
Query: 1851 RFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVDVISSNG 1909
+ PH K N LLQAH SR + +L D + +L +A R+L+A+VD+ S G
Sbjct: 65 PIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIALSKG 124
Query: 1910 WLSLALLAMEVSQMVTQGMWE-RDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMED 1968
WL AL A+++SQMV Q +WE DS L QLPHF IE V+D +E++D
Sbjct: 125 WLRTALNALDLSQMVVQRLWEDSDSPLKQLPHF--------------LIEDVYDKLELKD 170
Query: 1969 DERRELLQMSDVQLLDIARFCNR-FPNIDMSFEV--QDSENVRAGEDITLQVVLERDLEG 2025
R + D+ ++ F NR PN + +E+ + + E + + L +E
Sbjct: 171 GS-RSFELLLDMNAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVE- 228
Query: 2026 RTEVGPVYSNRYP--KAKEEGWWLVVGDTKTNQLLAIKRVSLQRK---SRVKLDFAAP-A 2079
E+ PV++ P K K E WWLVVGD+ TN+LLAIKRV+L++K + VKLDF P +
Sbjct: 229 -LEITPVFAWDLPRHKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKSNEVKLDFTVPLS 287
Query: 2080 EAGKKTYTLYFMCDSYMGCDQEYAFTV 2106
E G + YT+Y + DSY+GCDQE +F++
Sbjct: 288 EPGPENYTVYLISDSYLGCDQEVSFSL 314
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 3e-79
Identities = 178/640 (27%), Positives = 285/640 (44%), Gaps = 60/640 (9%)
Query: 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401
FNP Q V L + D+NVL++APTGSGKT+ + AIL E G + VYI PL+A
Sbjct: 33 FNPQQEAVEKGLLS-DENVLISAPTGSGKTLIALLAILS---TLLEGG-GKVVYIVPLKA 87
Query: 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKY 1461
LA+E+Y ++ + LG+RV TG+ +D + L + +I++TPEK D+L+R+ +
Sbjct: 88 LAEEKYEEFSRL--EELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--W 143
Query: 1462 VQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW 1520
+++V L +IDE+HL+G + GPVLE IV+RMR + IRIV LS +L NA+++ +W
Sbjct: 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADW 199
Query: 1521 IGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALV 1579
+ A + P R VP G D + +++ LV
Sbjct: 200 LNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT-WPLLIDNLALELVLESLAEGGQVLV 258
Query: 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKS-AFLLWPAEEVE-PFIDNIQEEMLKATLRHGVG 1637
FV SRK TA L S L A + P ++E L + GV
Sbjct: 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
+ H GL + D+++V F GKIKV V + ++ GV L A V++ T+ YD + D
Sbjct: 319 FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYD-PKGGIVD 377
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNP-------------- 1743
PV D+LQM G A RP D+ G+ +IL + + Y L + P
Sbjct: 378 IPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLR 437
Query: 1744 --------------------NYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDM 1783
Y + L E + ++ LE + I+ +
Sbjct: 438 TFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWE 497
Query: 1784 DLSPSNHGMIASYYYISYTTIERFS---SSLTPKTRMKGLLEVLASASEYAQLPIRPGE- 1839
L + G + S YI + + F + L + GLL +++ + + +R E
Sbjct: 498 ALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERES 557
Query: 1840 EEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGG-NLKLDQEEVLLSASRLL 1898
E+V + Q + + V+ N LLQA + ++ + D++E+L +
Sbjct: 558 SELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAP 617
Query: 1899 QAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQL 1938
++ + + WLS LLA+ + + L L
Sbjct: 618 GDLLRIAETAEWLSADLLAL--GKAAERLAKILGLGLHVL 655
|
Length = 766 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 4e-45
Identities = 125/386 (32%), Positives = 195/386 (50%), Gaps = 55/386 (14%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +N+++ PT AGKT +A I + + K +Y+ P+++L E
Sbjct: 34 LRKGENVIVSVPTAAGKTLIAYSAIYETF-----------LAGLKSIYIVPLRSLAMEKY 82
Query: 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLL 627
LS RL+ ++V+ GD I+ +++ T EK D + D V L+
Sbjct: 83 EELS-RLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLI 139
Query: 628 IIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+ DEIH++ D +RGP LE+ V + R + R++ LSAT+ N ++A +L +L K
Sbjct: 140 VADEIHIIGDEDRGPTLET-VLSSARYV---NPDARILALSATVSNANELAQWLNASLIK 195
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDLCYEKVVAVAGKHQVLIFVH 741
+++RPVPL +GI +K L +R Q+ + ++ V G QVL+FV
Sbjct: 196 ------SNFRPVPLK---LGILYRKRLILDGYERSQVDINSLIKETVNDGG--QVLVFVS 244
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDS---VSREILQSHTDMVKSNDLKDLLPYGFA 798
SRK A L + E + VS E + D L ++LP+G A
Sbjct: 245 SRKNAEDYAE----------MLIQHFPEFNDFKVSSENNNVYDDS-----LNEMLPHGVA 289
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
HHAG++ R+ +E++F + +++V+V+T TLA GVNLPA VI++ Y G
Sbjct: 290 FHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYG--NGGIRY 347
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGII 884
LS ++I QM+GRAGRP YD YG G I
Sbjct: 348 LSNMEIKQMIGRAGRPGYDQYGIGYI 373
|
Length = 674 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-44
Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 63/470 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ KS + N++L PT +GKT VA + ++ +L +G
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL----REGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + ++V +GD T + + + II+ T EK+D
Sbjct: 70 -KAVYLVPLKALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VKL++ DEIHL+ +RG LE I+ + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ-------ILGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIG--IQVKKPLQRF-QLMNDLCY 724
+ N E++A +L L + +RPV L + Y G ++RF L Y
Sbjct: 179 VGNAEELAEWLNAELVV------SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVY 232
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL--KEDSVSREILQSHTD 782
+ AV L+FV++R+ K A + + RFL E +E+ S +
Sbjct: 233 D---AVKKGKGALVFVNTRRSAEKEALEL------AKKIKRFLTKPELRALKELADSLEE 283
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ LK L G A HHAG+ R +R L+ED F +G ++V+ +T TL+ G+NLPA VI
Sbjct: 284 NPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVI 343
Query: 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-- 900
I+ T+ Y+ W ++ L+I QM+GRAGRP+YD GE II+ E LM +
Sbjct: 344 IRDTKRYS--NFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS---KLMERYI 398
Query: 901 ---------QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
L ES F S Q+ A I V N KE N++ T+
Sbjct: 399 FGKPEKLFSMLSNESAFRS----QVLALITNFGVSNFKELVNFLERTFYA 444
|
Length = 720 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 1e-43
Identities = 134/438 (30%), Positives = 212/438 (48%), Gaps = 76/438 (17%)
Query: 478 KISEM--PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
KI+E+ PE + +G+ +L Q+ ++ L N+L PT +GKT +A L +L
Sbjct: 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAML 61
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+ +A K +Y+ P++AL +E R + V+V +GD +
Sbjct: 62 KAIA-----------RGGKALYIVPLRALASEKFEEFE-RFEELGVRVGISTGDYDSRDE 109
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVR 652
+ + IIV T EK D + R + + +++DE+HL+ NRGP LE +A+ R
Sbjct: 110 WLGDNDIIVATSEKVDSLLRNGAP--WLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR 167
Query: 653 QIETTKEHIRLVGLSATLPNYEDVALFLR----------VNLEKGLFY-----FDNSYRP 697
+++V LSAT+ N +++A +L ++L +G+FY FD+S R
Sbjct: 168 LNPD----LQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQRE 223
Query: 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETA----KTARAI 753
V V L+ D + Q L+FV SR+ + A A+
Sbjct: 224 VE---------VPSKDDTLNLVLD-------TLEEGGQCLVFVSSRRNAEGFAKRAASAL 267
Query: 754 RD--TALENDTLGRFLKEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810
+ TA E L ++ EI + S T+ S DL D + G A HHAG++R R+
Sbjct: 268 KKTLTAAERAEL------AELAEEIREVSDTET--SKDLADCVAKGAAFHHAGLSREHRE 319
Query: 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QM 867
LVED F D ++V+ ST TLA G+NLPA VII+ + Y+ G + P+ ++ QM
Sbjct: 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAG----MQPIPVLEYHQM 375
Query: 868 LGRAGRPQYDSYGEGIII 885
GRAGRP D YGE +++
Sbjct: 376 AGRAGRPGLDPYGEAVLL 393
|
Length = 737 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 2e-41
Identities = 123/398 (30%), Positives = 198/398 (49%), Gaps = 42/398 (10%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + P Q + N+++A PT SGKT+ +E ++ ++ E G +AVY+
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMV--NKLLREGG--KAVYL 74
Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
PL+ALA+E+YR E K + LG+RV TG+ + L K III+T EK+D+L R
Sbjct: 75 VPLKALAEEKYR--EFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH- 131
Query: 1457 KQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
+++ V L + DE+HLIG G LE+I++ M + +I+ LS ++ NA+
Sbjct: 132 -GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM-------LGRAQILGLSATVGNAE 183
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF----EARMQAMTKPTFTAIVQHA 1571
+L EW+ A RPV L +GV F + +++ + +
Sbjct: 184 ELAEWLNAEL-----VVSDWRPVKLR---KGVFYQGFLFWEDGKIERFPNSWESLVYDAV 235
Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE-EVEPFIDNIQE----E 1626
K K ALVFV +R+ A++L + FL P ++ D+++E E
Sbjct: 236 KKGKGALVFVNTRRSAEKEALEL-------AKKIKRFLTKPELRALKELADSLEENPTNE 288
Query: 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686
LK LR GV + H GL +T++ ++ F G IKV + ++ G+ L A V++ T+
Sbjct: 289 KLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTK 348
Query: 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724
Y D PV ++ QMMG A RP D G+ +I+
Sbjct: 349 RY--SNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384
|
Length = 720 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 6e-37
Identities = 114/374 (30%), Positives = 175/374 (46%), Gaps = 38/374 (10%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
NV+V+ PT +GKT+ + AI ++++YI PL +LA E+Y E+ + L
Sbjct: 39 NVIVSVPTAAGKTLIAYSAIYETFLAG-----LKSIYIVPLRSLAMEKYE--ELSRLRSL 91
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
GMRV G+ +++ ++I T EK D+L + V L + DE+H+IG
Sbjct: 92 GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLIVADEIHIIGD 149
Query: 1479 QG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
+ GP LE ++S RY+ RI+ALS +++NA +L +W+ A S NF RP
Sbjct: 150 EDRGPTLETVLSSARYVNPDA----RILALSATVSNANELAQWLNA-SLIKSNF----RP 200
Query: 1538 VPLEIHIQGVD--ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM 1595
VPL++ I I + R Q V + LVFV SRK A L+
Sbjct: 201 VPLKLGILYRKRLILDGYERSQVDINSLIKETVN---DGGQVLVFVSSRKNAEDYAEMLI 257
Query: 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655
+ D K V +N+ ++ L L HGV + H GL+ + + +F
Sbjct: 258 QHFPEFNDFK----------VSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307
Query: 1656 EAGKIKVCVMSSSMCWGVPLTAHLVVVMG-TQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
IKV V + ++ GV L A LV+V T+Y +G ++ + QM+G A RP
Sbjct: 308 RNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIK---QMIGRAGRPG 364
Query: 1715 LDNSGKCVILCHAP 1728
D G I +P
Sbjct: 365 YDQYGIGYIYAASP 378
|
Length = 674 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-35
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
+Q++ + LS D +L+ APTG+GKT +L ILQ L + + +
Sbjct: 1 TPIQAQAIPAILSGKD-VLVQAPTGSGKTLAFLLPILQALLP--------KKGGPQALVL 51
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE----ETQIIVTTPEKWDIIT 612
AP + L ++ L ++ ++V L+G +L Q + + I+V TP + +
Sbjct: 52 APTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL 111
Query: 613 RKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R+ G + +KLL++DE H L D G LE I++R +++ LSATLP
Sbjct: 112 RR-GKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSR-------LPPDRQILLLSATLP 163
Query: 672 -NYEDV 676
N ED+
Sbjct: 164 RNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 8e-35
Identities = 115/384 (29%), Positives = 185/384 (48%), Gaps = 49/384 (12%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N+L A PT SGKT+ +E A+L+ + G +A+YI PL ALA E++ ++E +F + L
Sbjct: 41 NLLAAIPTASGKTLIAELAMLK---AIARGG--KALYIVPLRALASEKFEEFE-RFEE-L 93
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR---RWKQRKYVQQVSLFIIDELHL 1475
G+RV TG+ + L II++T EK D+L R W + ++ ++DE+HL
Sbjct: 94 GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPW-----LDDITCVVVDEVHL 148
Query: 1476 IGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNF 1531
I GP LEV ++++R + ++ +VALS ++ NA +L +W+ A S
Sbjct: 149 IDSANRGPTLEVTLAKLRRLNPDLQ----VVALSATIGNADELADWLDAELVDSEW---- 200
Query: 1532 PPGVRPVPLEIHIQGV---DITNFEARMQAM---TKPTFTAIVQHAKNEK-PALVFVPSR 1584
RP+ L +GV +F+ + + +K +V E LVFV SR
Sbjct: 201 ----RPIDLR---EGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSR 253
Query: 1585 K----YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640
+ + + A L + + A L AEE+ D + L + G + H
Sbjct: 254 RNAEGFAKRAASALKKTLTAAERAELAEL---AEEIREVSDTETSKDLADCVAKGAAFHH 310
Query: 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPV 1700
GL++ +E+V F IKV + ++ G+ L A V++ + YDG PV
Sbjct: 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP-IPV 369
Query: 1701 TDLLQMMGHASRPLLDNSGKCVIL 1724
+ QM G A RP LD G+ V+L
Sbjct: 370 LEYHQMAGRAGRPGLDPYGEAVLL 393
|
Length = 737 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402
PIQ Q + + +VLV APTGSGKT+ IL+ + G +A+ +AP L
Sbjct: 1 TPIQAQAIPAILS-GKDVLVQAPTGSGKTLAFLLPILQAL--LPKKGGPQALVLAPTREL 57
Query: 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG--QIIISTPEKWDALSRRWKQ 1458
A++ Y + + K + LG+RV LTG T++ + L+KG I++ TP + L RR K
Sbjct: 58 AEQIYEELK-KLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGK- 115
Query: 1459 RKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA-NAKD 1516
K ++ + L ++DE H + G G LE I+SR+ +I+ LS +L N +D
Sbjct: 116 LKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP-------PDRQILLLSATLPRNLED 168
Query: 1517 L 1517
L
Sbjct: 169 L 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-31
Identities = 135/620 (21%), Positives = 232/620 (37%), Gaps = 147/620 (23%)
Query: 279 DQQIDPQQCQKLAEEVLKILAEGDDREVENKL-LYHLQFDKFSLIKF-LLRNRLKVVWCT 336
+Q P + KL IL ++ E+E L Y+L + L + LL R V+
Sbjct: 54 EQLRPPSEVLKLLRSARIILLPANEEEIEEMLKSYNLSAEVARLCRHCLLEGRYTVLTEG 113
Query: 337 RLARAQDQE-----ERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEAR 391
+ +E ++++ E+ G + + LE+ + +
Sbjct: 114 NRIKYGGEEICERCAEEELKRELRFRGNSIGM---------------LEQLERLLHKFR- 157
Query: 392 RLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQR 451
DLD + F +L R
Sbjct: 158 ---------------------------------DLDKVLEMLDPRFDPLEDPEL----TR 180
Query: 452 FTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
+ E V + LD EK ++ + +G+ +L VQ ++ L
Sbjct: 181 YDEVTAETDEVERVPVDELDIPEKFKRMLKR--------EGIEELLPVQVLAVEAGLLEG 232
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
+N+L+ + T +GKT + L + +L L+ K++++ P+ AL + +
Sbjct: 233 ENLLVVSATASGKTLIGELAGIPRL-LSGGK---------KMLFLVPLVALANQKYEDFK 282
Query: 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII--TRKSGD---RTYTQL--V 624
R +KV G ++R + E ++V T DII T + D RT L +
Sbjct: 283 ERYSKLGLKVAIRVG---MSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDI 339
Query: 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
++IDEIH L D RGP L+ ++ R + + + LSAT+ N E++A L
Sbjct: 340 GTVVIDEIHTLEDEERGPRLDGLIGR----LRYLFPGAQFIYLSATVGNPEELAKKLGAK 395
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC---YEKVVAVAGKHQVLIFV 740
L +D RPVPL + + + + +++ ++ L + + + Q ++F
Sbjct: 396 L----VLYDE--RPVPLERHLVFARNES--EKWDIIARLVKREFSTESSKGYRGQTIVFT 447
Query: 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800
+SR+ + L L + PY
Sbjct: 448 YSRRRCHE--------------LADALTGKGLKAA------------------PY----- 470
Query: 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELS 860
HAG+ +R+ VE F + +V+TA LA GV+ PA VI + + W LS
Sbjct: 471 HAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----EW--LS 524
Query: 861 PLDIMQMLGRAGRPQYDSYG 880
+ QMLGRAGRP Y G
Sbjct: 525 VREFQQMLGRAGRPDYHDRG 544
|
Length = 830 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 26/219 (11%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G L Q ++ LS +++L APTG+GKT A+L L+ L
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEAL---------KRGKG 54
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE----ETQIIVTTPE 606
+++ + P + L + L +KV L G + Q + +T I+VTTP
Sbjct: 55 GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPG 114
Query: 607 KWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVG 665
+ + D+ V L+I+DE H L D G LE ++ ++++L+
Sbjct: 115 RLLDLLEN--DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKL-------LPKNVQLLL 165
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
LSAT P + L L +N + D + P+ +Q+
Sbjct: 166 LSATPPEEIENLLELFLN---DPVFIDVGFTPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 2e-23
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 18/206 (8%)
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
GF+ P Q + L + +V++AAPTGSGKT+ + L + R + +
Sbjct: 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPAL---EALKRGKGGRVLVLV 61
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGET-AMDLKLLEKG--QIIISTPEKWDALSR 1454
P LA++ + + V G++ L+ LE G I+++TP + L
Sbjct: 62 PTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
K + V L I+DE H + G G LE ++ + ++++ LS +
Sbjct: 122 NDK--LSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP-------KNVQLLLLSATPPE 172
Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVP 1539
+ + + G P+
Sbjct: 173 EIENLLELFL--NDPVFIDVGFTPLE 196
|
Length = 201 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-21
Identities = 104/430 (24%), Positives = 176/430 (40%), Gaps = 95/430 (22%)
Query: 480 SEMPEWAQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
+ + + FK T L Q + S +N+L+ APTG+GKT A L ++ +L
Sbjct: 6 NILDPRVREWFKRKFTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELL- 63
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN--RLQMYDVKVRELSGD--QTLTRQQ 594
+ +Y++P+KAL ++ L R +V VR GD Q+ ++
Sbjct: 64 --SLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVR--HGDTPQSEKQKM 119
Query: 595 IEETQ-IIVTTPEKWDII-TRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTV 651
++ I++TTPE I+ V+ +I+DEIH L ++ RG L + R +
Sbjct: 120 LKNPPHILITTPESLAILLNSPKFRELLRD-VRYVIVDEIHALAESKRGVQLALSLER-L 177
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQY-IGIQ 708
R++ + R +GLSAT+ E+VA FL F + V +++ I +
Sbjct: 178 REL--AGDFQR-IGLSATVGPPEEVAKFLVG--------FGDPCEIVDVSAAKKLEIKVI 226
Query: 709 VKKP-LQRFQLMNDLCYEKVVAVAGKHQ-VLIFVHSRKETAKTARAIRDTALENDTLGRF 766
L + + YE++ + KH+ LIF ++ R
Sbjct: 227 SPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNT----------------------RS 264
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
E R LK L P +HH ++R R VE+ +G ++ +V+
Sbjct: 265 GAERLAFR--------------LKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVA 310
Query: 827 TATLAWG-----VNLPAHTVIIKGTQIYNPEKGAWTELSPLDI---MQMLGRAGRPQYDS 878
T++L G ++L VI Q+ SP + +Q +GRAG +
Sbjct: 311 TSSLELGIDIGDIDL----VI----QL----------GSPKSVNRFLQRIGRAGH-RLGE 351
Query: 879 YGEGIIITGH 888
+GIII
Sbjct: 352 VSKGIIIAED 361
|
Length = 814 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-21
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
++LL APTG+GKT A+L IL+ L + +++ +AP + L +V L
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELL---------DSLKGGQVLVLAPTRELANQVAERLKE 52
Query: 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLII 629
+KV L G ++ +Q +T I+V TP + + + + + LLI+
Sbjct: 53 LFG-EGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER--LKLSLKKLDLLIL 109
Query: 630 DEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
DE H L + ++ + + +++ LSAT
Sbjct: 110 DEAHRLLNQ------GFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-19
Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 42/279 (15%)
Query: 1326 ALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT------ICSEFAIL 1379
L + E + F P Q +++ +NVL+ APTGSGKT + +E +L
Sbjct: 7 ILDPRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINE--LL 63
Query: 1380 RNHQKASETGVMRAVYIAPLEALAK---ERYRDWEIKFGQGLGMRVVELTGET--AMDLK 1434
+ E G+ A+YI+PL+AL R + + LG+ V G+T + K
Sbjct: 64 SLGKGKLEDGI-YALYISPLKALNNDIRRRLEEP----LRELGIEVAVRHGDTPQSEKQK 118
Query: 1435 LLEKGQ-IIISTPEK------WDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEV 1486
+L+ I+I+TPE + +YV I+DE+H L + G L +
Sbjct: 119 MLKNPPHILITTPESLAILLNSPKFRELLRDVRYV------IVDEIHALAESKRGVQLAL 172
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQ 1545
+ R+R +A RI LS ++ +++ +++ G + + +++
Sbjct: 173 SLERLRELAGDF---QRI-GLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR 1584
D+ E A+ + I + K + L+F +R
Sbjct: 229 VEDLIYDEELWAALYE----RIAELVKKHRTTLIFTNTR 263
|
Length = 814 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 4e-19
Identities = 109/444 (24%), Positives = 176/444 (39%), Gaps = 104/444 (23%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413
++VLV APT SGKT+ +E+AI LR+ Q R +Y +P++AL+ ++YRD K
Sbjct: 134 GESVLVCAPTSSGKTVVAEYAIALALRDGQ--------RVIYTSPIKALSNQKYRDLLAK 185
Query: 1414 FG---QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WKQRKYVQQVSL 1467
FG +G+ +TG+ +++ ++ T E + R ++ +
Sbjct: 186 FGDVADMVGL----MTGDVSIN----PDAPCLVMTTEILRNMLYRGSES-----LRDIEW 232
Query: 1468 FIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH 1526
+ DE+H IG + G V E ++ + + +R V LS ++ NA++ EWI
Sbjct: 233 VVFDEVHYIGDRERGVVWEEVI-------ILLPDHVRFVFLSATVPNAEEFAEWIQRVHS 285
Query: 1527 GLFNFPPGV----RPVPLEIHI-------QGVD------ITNFEA--------------- 1554
+ V RPVPLE + VD NF +
Sbjct: 286 QPIHV---VSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342
Query: 1555 ---------------RMQAMTKPTFTAIVQHAKNEK--PALVFVPSRKYVRLTAVDLMTY 1597
R A IV + PA+VF SR+ A L T
Sbjct: 343 DDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTL 402
Query: 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEE---------MLKATLRHGVGYLHEGLNKTDQ 1648
+ ++K + E ++ I ++ EE + A L G+ H GL +
Sbjct: 403 DLVLTEEKERAI---REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459
Query: 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708
E+V LF+ G +KV + + G+ + A VV +DG N H + QM G
Sbjct: 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDG--NGHRWLSPGEYTQMSG 517
Query: 1709 HASRPLLDNSGKCVILCHAPRKEY 1732
A R LD G +++ E
Sbjct: 518 RAGRRGLDVLGTVIVIEPPFESEP 541
|
Length = 1041 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-17
Identities = 71/353 (20%), Positives = 107/353 (30%), Gaps = 44/353 (12%)
Query: 1280 QYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGF 1339
+Y D ++L I +AL E LY
Sbjct: 19 EYLEDEFKDAEGQEGSILRD---PEIEARPGKTSEFPELRDESLKSALVKAGIERLY--- 72
Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
H Q ++ NV+V TGSGKT IL RA+ + P
Sbjct: 73 SH----QVDALRLIRE-GRNVVVTTGTGSGKTESFLLPIL---DHLLRDPSARALLLYPT 124
Query: 1400 EALA---KERYRDWEIKFGQGLGMRVVELTGET---AMDLKLLEKGQIIISTPEKWDALS 1453
ALA ER R+ + TG+T + I+++ P+ L
Sbjct: 125 NALANDQAERLRELISDLPGKVTFGR--YTGDTPPEERRAIIRNPPDILLTNPDMLHYLL 182
Query: 1454 RRWKQRKYVQ--QVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510
R + ++DELH G QG V + + R+ + + ++I+ S +
Sbjct: 183 LRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL-LRRLLRRLRRYGSPLQIICTSAT 241
Query: 1511 LANAKDLGEWIGATSHGLFNFPPGV------RPVPLEIHIQGVDITNFEARMQAMTKPTF 1564
LAN + E LF V P L ++ A +
Sbjct: 242 LANPGEFAE-------ELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294
Query: 1565 TAIV---QHAKNEKPALVFVPSRKYV-RLTAVDLMTYSSMDGDQKSAFLLWPA 1613
A + + LVF SRK V L G A + A
Sbjct: 295 LATLAALLVRNGIQT-LVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA 346
|
Length = 851 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 4e-17
Identities = 105/458 (22%), Positives = 182/458 (39%), Gaps = 118/458 (25%)
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
+P F+ ++ E ELL +Q L V A L +G
Sbjct: 201 IPEKFKRMLKREGI---EELLPVQVLAVEA-------GLLEG------------------ 232
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
+N+LV + T SGKT+ E A + + + +++ PL ALA ++Y D++ ++ +
Sbjct: 233 -ENLLVVSATASGKTLIGELAGIPRLLSGGK----KMLFLVPLVALANQKYEDFKERYSK 287
Query: 1417 GLGMRVVELTG-------ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
LG++V G E + + II+ T E D L R K + V +
Sbjct: 288 -LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTV---V 343
Query: 1470 IDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGL 1528
IDE+H + + GP L+ ++ R+RY+ + + LS ++ N ++L + +GA L
Sbjct: 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQ----FIYLSATVGNPEELAKKLGAKLV-L 398
Query: 1529 FNFPPGVRPVPLEIHI-------QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFV 1581
++ RPVPLE H+ + DI + + T+ + Q +VF
Sbjct: 399 YD----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQ-------TIVFT 447
Query: 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641
SR+ A D +T + P+ H
Sbjct: 448 YSRRRCHELA-DALTGKGLK--------------AAPY--------------------HA 472
Query: 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVV----VMGTQYYDGQENAHTD 1697
GL +++ V F A ++ V ++++ GV A V+ MG ++ +E
Sbjct: 473 GLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVRE----- 527
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKK 1735
QM+G A RP + GK +L P K+Y+
Sbjct: 528 -----FQQMLGRAGRPDYHDRGKVYLLVE-PGKKYHAS 559
|
Length = 830 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
+VL+AAPTGSGKT+ + IL + + + +AP LA + +K G
Sbjct: 2 DVLLAAPTGSGKTLAALLPIL---ELLDSLKGGQVLVLAPTRELANQVAE--RLKELFGE 56
Query: 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475
G++V L G T++ L K I++ TP + R K ++++ L I+DE H
Sbjct: 57 GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHR 114
Query: 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
+ QG + I ++ +++ LS
Sbjct: 115 LLNQGFGL------LGLKILLKLPKDRQVLLLS 141
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-15
Identities = 95/390 (24%), Positives = 150/390 (38%), Gaps = 105/390 (26%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
LL APTG+GKT L L LA +Y+ P++AL ++ NL +
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEK-----PKKGLHTLYITPLRALAVDIARNLQAPI 86
Query: 575 Q--MYDVKVRELSGDQTLTRQQIEET---QIIVTTPEKWDI-ITRKSGDRTYTQLVKLLI 628
+ ++V +GD + + + + I++TTPE + ++ R + L + ++
Sbjct: 87 EELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDL-RCVV 145
Query: 629 IDEIH-LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
+DE H L RG LE +AR + +R GLSAT+ N E+ L
Sbjct: 146 VDEWHELAGSKRGDQLELALAR----LRRLAPGLRRWGLSATIGNLEEARRVL------- 194
Query: 688 LFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETA 747
+ V G VL+
Sbjct: 195 ----------------------------------------LGVGGAPAVLV-------RG 207
Query: 748 KTARAIRDTALENDTLGRF-------LKE-DSVSREILQSHTDMVKSN----------DL 789
K +AI +L ++ RF L+ V EI Q+ T +V +N L
Sbjct: 208 KLPKAIPVISLLPESEERFPWAGHLGLRALPEVYAEIDQARTTLVFTNTRSQAELWFQAL 267
Query: 790 KDLLPYGF---AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN-LPAHTVIIKG 845
+ P A+HH + R R+ VE G ++ +V T++L GV+ P VI
Sbjct: 268 WEANPEFALPIALHHGSLDREQRRWVEAAMAAGRLRAVVCTSSLDLGVDFGPVDLVI--- 324
Query: 846 TQIYNPEKGAWTELSPLDIMQMLGRAG-RP 874
QI +P KG + L +Q GR+ RP
Sbjct: 325 -QIGSP-KGV----ARL--LQRAGRSNHRP 346
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNP 851
L A H G+++ +R+ + D F +G ++VLV+T G++LP VII
Sbjct: 10 LGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD------ 63
Query: 852 EKGAWTELSPLDIMQMLGRAGRP 874
SP +Q +GRAGR
Sbjct: 64 -----LPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-14
Identities = 101/468 (21%), Positives = 169/468 (36%), Gaps = 85/468 (18%)
Query: 480 SEMPEWAQPAFK------GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
SE PE + K G+ +L Q + + N+++ TG+GKT +L IL
Sbjct: 49 SEFPELRDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPIL 107
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS--NRLQMYDVKVRELSGD--QT 589
L + + + + + P AL + L V +GD
Sbjct: 108 DHLLRDPSA---------RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPE 158
Query: 590 LTRQQIEE-TQIIVTTPEKWDIITRKSGDRT---YTQLVKLLIIDEIHLLHDNRGPVLES 645
R I I++T P+ + ++ D L K L++DE LH RG V S
Sbjct: 159 ERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNL-KYLVVDE---LHTYRG-VQGS 213
Query: 646 IVA----RTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPL 700
VA R +R++ ++++ SATL N E + E D P L
Sbjct: 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE---VPVDEDGSPRGL 270
Query: 701 SQQYI---GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTA 757
I+ R + +L + V Q L+F SRK+ + R
Sbjct: 271 RYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPR--- 327
Query: 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
R ++E ++L + + + AG+ R +R+ +E F
Sbjct: 328 ------RRLVRE---GGKLLDAVS-----------------TYRAGLHREERRRIEAEFK 361
Query: 818 DGHVQVLVSTATLAWGVNLPA-HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
+G + +++T L G+++ + VI G P L Q GRAGR
Sbjct: 362 EGELLGVIATNALELGIDIGSLDAVIAYG----YPGVSV------LSFRQRAGRAGRRGQ 411
Query: 877 DSYGEGIIITGHSE--LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
+S +++ S+ YYL + L V + N E +L
Sbjct: 412 ESL---VLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDNNEYLL 456
|
Length = 851 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 54/175 (30%)
Query: 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758
P+ Q + ++ +K +L+ + + +VLIF S+K
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEH-------LKKGGKVLIFCPSKKML------------ 41
Query: 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
D L L++ + A H ++ +R+ V F +
Sbjct: 42 --DELAELLRKPGIK-----------------------VAALHGDGSQEEREEVLKDFRE 76
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
G + VLV+T +A G++LP +V+I Y+ SP +Q +GRAGR
Sbjct: 77 GEIVVLVATDVIARGIDLPNVSVVI----NYDLPW------SPSSYLQRIGRAGR 121
|
Length = 131 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-11
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G A+HHAG+ ++LVE+LF +G V+V+ +T T A G+N+PA TV+ ++
Sbjct: 442 LLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDG 501
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
W LSP + QM GRAGR D G I+I
Sbjct: 502 NGHRW--LSPGEYTQMSGRAGRRGLDVLGTVIVI 533
|
Length = 1041 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 5e-11
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 21/184 (11%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N+L+ +PTG+GKT A L I+ +L +G Y +YV+P++AL ++ NL
Sbjct: 49 NVLISSPTGSGKTLAAFLAIIDEL-FRLGREGELEDKVY-CLYVSPLRALNNDIHRNLEE 106
Query: 573 RLQ------------MYDVKVRELSGDQTLTRQQ--IEET-QIIVTTPEKWDIITRKSGD 617
L + +++V +GD + +Q +++ I++TTPE I+
Sbjct: 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKF 166
Query: 618 RTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
R + VK +I+DEIH L +N RG L + R + ++ E +R +GLSAT+ E+V
Sbjct: 167 REKLRTVKWVIVDEIHSLAENKRGVHLSLSLER-LEEL-AGGEFVR-IGLSATIEPLEEV 223
Query: 677 ALFL 680
A FL
Sbjct: 224 AKFL 227
|
Length = 876 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-10
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
+ VP + E+ + Q A + L +++L+C
Sbjct: 96 DYDMVPDAESPFDLAPPAREYPFELDPFQQEAI---------------AILERGESVLVC 140
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577
APT +GKT VA I LAL +++Y +P+KAL + +L +
Sbjct: 141 APTSSGKTVVAEYAI--ALALRDGQ---------RVIYTSPIKALSNQKYRDLLAKFGDV 189
Query: 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL--LIIDEIHLL 635
V ++GD ++ + +V T E I R R L + ++ DE+H +
Sbjct: 190 ADMVGLMTGDVSIN----PDAPCLVMTTE----ILRNMLYRGSESLRDIEWVVFDEVHYI 241
Query: 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
D RG V E ++ I H+R V LSAT+PN E+ A +++ + + ++
Sbjct: 242 GDRERGVVWEEVI------ILLPD-HVRFVFLSATVPNAEEFAEWIQ-RVHSQPIHVVST 293
Query: 695 -YRPVPLSQQYI 705
+RPVPL + ++
Sbjct: 294 EHRPVPL-EHFV 304
|
Length = 1041 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-10
Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 114/418 (27%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVAPMKALVAEVVGNLSNRLQ 575
APTG+GKT A L L +L +D H +I+Y++P+KAL +V NL L+
Sbjct: 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62
Query: 576 -MYDVKVRE-----------LSGDQT------LTRQQIEETQIIVTTPEK-WDIITRKSG 616
+ D + R +GD LTR I++TTPE + ++T ++
Sbjct: 63 GIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN---PPDILITTPESLYLMLTSRA- 118
Query: 617 DRTYTQLVKLLIIDEIHLLH-DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
R + V+ +IIDE+H + RG L + R + T+ + I GLSAT+ + D
Sbjct: 119 -RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRI---GLSATVRSASD 174
Query: 676 VALFLRVNLEKGLFYFDNSYRPV----PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731
VA FL RPV P + ++ I++ P+ M+D V +VA
Sbjct: 175 VAAFL------------GGDRPVTVVNPPAMRHPQIRIVVPVAN---MDD-----VSSVA 214
Query: 732 GKH----------------------QVL------IFVHSR----KETAK-----TARAIR 754
+VL +F +SR K TA+ AR R
Sbjct: 215 SGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR 274
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
++ D + S + S + +S HH +++ R + E
Sbjct: 275 SPSIAVDAAHFESTSGATSNRVQSSDVFIARS-------------HHGSVSKEQRAITEQ 321
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872
G ++ +V+T++L G+++ A ++I Q+ P LS +Q +GRAG
Sbjct: 322 ALKSGELRCVVATSSLELGIDMGAVDLVI---QVATP-------LSVASGLQRIGRAG 369
|
Length = 1490 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-10
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 1361 LVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWE-IKFGQGL 1418
L+ APTGSGKT+ L + +YI PL ALA + R+ + GL
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALAVDIARNLQAPIEELGL 91
Query: 1419 GMRVVELTGETAMDLKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH- 1474
+RV TG+T+ + ++ I+++TPE L + + + ++DE H
Sbjct: 92 PIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDLRCVVVDEWHE 151
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
L G + G LE+ ++R+R +A + R LS ++ N ++ +
Sbjct: 152 LAGSKRGDQLELALARLRRLAPGL----RRWGLSATIGNLEEARRVLL 195
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-09
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPEK 853
A H G+++ +R+ + + F +G +VLV+T G++LP + VI Y+
Sbjct: 8 IKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVI-----NYDLPW 62
Query: 854 GAWTELSPLDIMQMLGRAGR 873
+P +Q +GRAGR
Sbjct: 63 ------NPASYIQRIGRAGR 76
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-08
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388
L +Y GF+ PIQ + L + D V+ A TGSGKT IL + +
Sbjct: 9 ELLRGIYALGFEKPTPIQARAIPPLLSGRD-VIGQAQTGSGKTAAFLIPILEKLDPSPKK 67
Query: 1389 GVMRAVYIAPLEALA---KERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QII 1442
+A+ +AP LA E R K G+ ++VV + G T++ ++ L++G I+
Sbjct: 68 DGPQALILAPTRELALQIAEVAR----KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIV 123
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472
++TP + L R K + +V ++DE
Sbjct: 124 VATPGRLLDLLERGKLD--LSKVKYLVLDE 151
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L +AL GF+ PIQ ++ D VL A TG+GKT +L+ K+
Sbjct: 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKS 94
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLEKG-QI 1441
E + A+ +AP LA + + K G+ L G+RV + G ++ ++ L++G I
Sbjct: 95 VERKYVSALILAPTRELAVQIAEE-LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDI 153
Query: 1442 IISTP 1446
+++TP
Sbjct: 154 VVATP 158
|
Length = 513 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-07
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMR----AV 1394
F F P Q L + NVL+++PTGSGKT+ + AI+ + G + +
Sbjct: 30 FGTFTPPQRYAI-PLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCL 88
Query: 1395 YIAPLEALAKERYRDWEI----------KFGQGL-GMRVVELTGETAMD--LKLLEKG-Q 1440
Y++PL AL + +R+ E + G+ L +RV TG+T+ K+L+K
Sbjct: 89 YVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPH 148
Query: 1441 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVE 1499
I+I+TPE L K R+ ++ V I+DE+H L + G L + + R+ +A
Sbjct: 149 ILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG--G 206
Query: 1500 NKIRI 1504
+RI
Sbjct: 207 EFVRI 211
|
Length = 876 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 89/490 (18%), Positives = 171/490 (34%), Gaps = 101/490 (20%)
Query: 453 TNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
K + + + K L E + F+ T +Q L+
Sbjct: 11 KLKSAHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTP---IQLAAIPLILAGR 67
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
D +L A TG GKT +L +LQ++ ++ +AP + L ++ L
Sbjct: 68 D-VLGQAQTGTGKTAAFLLPLLQKI-----LKSVERKYVSALI-LAPTRELAVQIAEELR 120
Query: 572 NRLQ-MYDVKVRELSGDQTLTRQ--QIEET-QIIVTTPEK-WDIITRKSGDRTYTQLVKL 626
+ + ++V + G ++ +Q ++ I+V TP + D+I R D V+
Sbjct: 121 KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLD---LSGVET 177
Query: 627 LIIDEIHLLHD---NRG--PVLESIVARTVRQIETTKEHIRLVGL-SATLPNYEDVALFL 680
L++DE D + G +E I+ R L SAT+P +D+
Sbjct: 178 LVLDEA----DRMLDMGFIDDIEKILKAL--------PPDRQTLLFSATMP--DDIRELA 223
Query: 681 RVNLEKGLFY---FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737
R L + + R + +Q+ ++V+ ++ +L+ L + +V+
Sbjct: 224 RRYLNDPVEIEVSVEKLERTLKKIKQFY-LEVESEEEKLELLLKLL-----KDEDEGRVI 277
Query: 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797
+FV +++ + A L++ L
Sbjct: 278 VFVRTKRLVEELA--------------ESLRKRGFKVAAL-------------------- 303
Query: 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H + + +R + F DG ++VLV+T A G+++P + +I Y+
Sbjct: 304 ---HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL------ 350
Query: 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE----LRYYLSLMNQQLPIESQFVSKLA 913
L P D + +GR GR G I E L+ + ++LP
Sbjct: 351 PLDPEDYVHRIGRTGR--AGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408
Query: 914 DQLNAEIVLG 923
+
Sbjct: 409 EDAKLLKTTR 418
|
Length = 513 |
| >gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-07
Identities = 77/461 (16%), Positives = 154/461 (33%), Gaps = 105/461 (22%)
Query: 441 RKCDLPEGSQRFTNKGYEEIHVPAM--KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
K D+ + E + + + K E +L
Sbjct: 151 EKMDIKDTRNFTELAKQEARLLKPLLLLLSAIARINKFKSFIE---------HEGYELQE 201
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+ + ++L APTG GKT +++ L L +++YV P
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKS-------RVIYVLP 254
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSG--DQTLTRQQIEETQIIVTTPEKWDIITRK-S 615
+ ++ ++ ++ V + L + L + ++ + +TT + + +
Sbjct: 255 FRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALI 314
Query: 616 GDRTYTQLVK----------------LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659
L+ L+I+DE+HL D + + + + +
Sbjct: 315 VVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETML---AALLALLEALA--EA 369
Query: 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQVKKPLQRFQ 717
+ ++ +SATLP + L + + + P ++ + V+ +
Sbjct: 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED--GPQE 427
Query: 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777
+ +L E+V GK +VL+ V++ RAI L LKE
Sbjct: 428 ELIELISEEV--KEGK-KVLVIVNTVD------RAIE--------LYEKLKEK------- 463
Query: 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLFGDGHVQVLVSTATLAWG 833
LL H+ T DR+ ++ LF ++V+T + G
Sbjct: 464 ---------GPKVLLL-------HSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLD-IMQMLGRAGR 873
V++ +I TEL+P+D ++Q GR R
Sbjct: 508 VDIDFDVLI--------------TELAPIDSLIQRAGRVNR 534
|
Length = 733 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-06
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + AL N L+ PTG GKT +A + I +L R G K++++AP
Sbjct: 20 QLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRL---RWFGG-------KVLFLAPT 67
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQIEET-QIIVTTPE--KWDIIT-RK 614
K LV + + + ++ L+G+ + R+++ ++ V TP+ + D+ R
Sbjct: 68 KPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRI 127
Query: 615 SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
D V LLI DE H R V ++ + ++ ++GL+A+
Sbjct: 128 DLDD-----VSLLIFDEAH-----RA-VGNYAYVFVAKEYLRSAKNPLILGLTAS 171
|
Length = 542 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-06
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 25/146 (17%)
Query: 497 NRVQSRVY-----KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
N +++R+Y +AL N L+ PTG GKT +A+L I ++L G
Sbjct: 12 NTIEARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLH---KKGG------- 59
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQI-EETQIIVTTPE--K 607
K++ +AP K LV + L + + K+ +G+ R ++ E+ ++IV TP+ +
Sbjct: 60 KVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIE 119
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIH 633
D+I R + V LLI DE H
Sbjct: 120 NDLIAG----RISLEDVSLLIFDEAH 141
|
Length = 773 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT-AHLVVVM 1683
E+LK L V LH GL++ ++E + F GKIKV V + G+ L LV++
Sbjct: 4 AELLKE-LGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIY 62
Query: 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713
+ +Q +G A R
Sbjct: 63 D-----------LPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 73/403 (18%), Positives = 122/403 (30%), Gaps = 116/403 (28%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV---------- 563
+++ APTG GKT A+L AL+ + +++ P +A +
Sbjct: 2 LVIEAPTGYGKTEAALL-----WALHSLKSQKAD----RVIIALPTRATINAMYRRAKEA 52
Query: 564 --AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE-----TQIIVTTPEKWDI-ITRKS 615
+ + S + I V T ++ + +
Sbjct: 53 FGETGLYHSSILSSRIKEMGDSEEFEHLFPLYIHSNDTLFLDPITVCTIDQVLKSVFGEF 112
Query: 616 GDRTYTQL---VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG-----LS 667
G +T LLI DE+H + T+ I E ++ +S
Sbjct: 113 GHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLMS 161
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
ATLP FL+ EK + +N P + + + L
Sbjct: 162 ATLPK------FLKEYAEKIGYVEENEPLDLKPNERAPFIKIESDKVGEISSLERL---- 211
Query: 727 VVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786
+ + V I V+ T A+ LKE EI+
Sbjct: 212 LEFIKKGGSVAIIVN----TVDRAQEFYQQ----------LKEKGPEEEIM--------- 248
Query: 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDL----FGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ H+ T DR E F V+V+T + +++ +I
Sbjct: 249 ------------LIHSRFTEKDRAKKEAELLLEFKKSEKFVIVATQVIEASLDISVDVMI 296
Query: 843 IKGTQIYNPEKGAWTELSPLD-IMQMLGRAGRPQYDSYGEGII 884
TEL+P+D ++Q LGR R YGE
Sbjct: 297 --------------TELAPIDSLIQRLGRLHR-----YGEKNG 320
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 9e-06
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 1362 VAAPTGSGKTICS-EFAILR-------NHQKASETGVMRAVYIAPLEAL----------- 1402
V APTGSGKT+ + +A+ R + ++A + R +YI+P++AL
Sbjct: 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIP 60
Query: 1403 ----AKERYRDWEIKFGQGLGMRVVELTGET--AMDLKLLEK-GQIIISTPEKWDALSRR 1455
A ER R E + +G+R TG+T KL I+I+TPE L
Sbjct: 61 LKGIADERRRRGETEVNLRVGIR----TGDTPAQERSKLTRNPPDILITTPESL-YLMLT 115
Query: 1456 WKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514
+ R+ ++ V IIDE+H + G + G L + + R+ + +I LS ++ +A
Sbjct: 116 SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRI---GLSATVRSA 172
Query: 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554
D+ ++G PP +R + I + ++ + +
Sbjct: 173 SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSS 212
|
Length = 1490 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-05
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 11/192 (5%)
Query: 69 EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSG 128
EE+ KK KK + E + E++ + + L G +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEE---IKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 129 AADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDA-----A 183
+I A K K +K L + + K D D +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELD---SSKKAEKKNALDKDDDLNYVKDIDV 126
Query: 184 GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGG 243
N A + +D DDD + +++DDDE++ + D + D+E+EE
Sbjct: 127 LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Query: 244 GIDDDDESGDAN 255
+ D+D+S
Sbjct: 187 FVWDEDDSEALR 198
|
Length = 509 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 75/408 (18%), Positives = 131/408 (32%), Gaps = 122/408 (29%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP-----------MKAL 562
+++ APTG GKT A+L AL+ + +++ P K L
Sbjct: 2 LVIEAPTGYGKTEAALL-----WALHSIKSQKAD----RVIIALPTRATINAMYRRAKEL 52
Query: 563 VAEVVGNLSNRLQMYDVKVRELSGD----QTLTRQQIEE---TQIIVTTPEKWDI-ITRK 614
+G L + +K S + L ++ I V T ++ + +
Sbjct: 53 FGSNLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGE 112
Query: 615 SGDRTYTQLV---KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG-----L 666
G +T LLI DE+H + T+ I E ++ +
Sbjct: 113 FGHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLM 161
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNS---YRPVPLSQQY-IGIQVKKPLQRFQLMNDL 722
SATLP FL+ EK + N + +++ + + L
Sbjct: 162 SATLPK------FLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERL 215
Query: 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ + ++ I V+ T A+ EN
Sbjct: 216 ----LEFIKKGGKIAIIVN----TVDRAQEFYQQLKENA--------------------- 246
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDR-----QLVEDLFGDGHVQVLVSTATLAWGVNLP 837
+ LL H+ T DR +L+E+ V+V+T + +++
Sbjct: 247 ---PEEEIMLL-------HSRFTEKDRAKKEAELLEE-MKKNEKFVIVATQVIEASLDIS 295
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLD-IMQMLGRAGRPQYDSYGEGII 884
A +I TEL+P+D ++Q LGR R YG
Sbjct: 296 ADVMI--------------TELAPIDSLIQRLGRLHR-----YGRKNG 324
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-05
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
N LV PTG GKT + I R H+K + + +AP + L ++ + KF
Sbjct: 29 KKNTLVVLPTGLGKTAIALLVIAERLHKKGG-----KVLILAPTKPLVEQHAEFFR-KFL 82
Query: 1416 QGLGMRVVELTGETAMD--LKLLEKGQIIISTPE--KWDALSRRWKQRKYVQQVSLFIID 1471
++V TGE + + +L EK ++I++TP+ + D ++ R ++ VSL I D
Sbjct: 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRIS----LEDVSLLIFD 138
Query: 1472 ELH 1474
E H
Sbjct: 139 EAH 141
|
Length = 773 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-05
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 33/192 (17%)
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
F+ T +Q+R LS D ++ A TG+GKT ++ IL++L + DG
Sbjct: 19 FEKPTP---IQARAIPPLLSGRD-VIGQAQTGSGKTAAFLIPILEKLDPSPKKDG----- 69
Query: 550 NYKIVYVAPMKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE----TQIIV 602
+ + +AP + L +AEV L + ++KV + G ++ +QI + I+V
Sbjct: 70 -PQALILAPTRELALQIAEVARKLG---KHTNLKVVVIYGGTSI-DKQIRKLKRGPHIVV 124
Query: 603 TTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI-ETTKEH 660
TP + D++ R D VK L++DE + L+ +R+I + +
Sbjct: 125 ATPGRLLDLLERGKLD---LSKVKYLVLDEADRM-------LDMGFEDQIREILKLLPKD 174
Query: 661 IRLVGLSATLPN 672
+ + SAT+P
Sbjct: 175 RQTLLFSATMPK 186
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 176 YQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMV--------QEEDEEEE 227
+ + A G + DDD E+E +D++ + + + + + D E+E
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Query: 228 EDVAEPNASGAMQMGGGIDDDDESGDANEGMSLN 261
E+ E + ++DE A E +
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEA 169
|
This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-04
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 34/173 (19%)
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ ++ PTGAGKT VA + +L + + P K L+
Sbjct: 49 VKNRRTERRGVIVLPTGAGKTVVA-AEAIAEL-------------KRSTLVLVPTKELLD 94
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL- 623
+ L L + D ++ G +++E ++ V T + R+ +
Sbjct: 95 QWAEALKKFLLLND-EIGIYGGG----EKELEPAKVTVAT---VQTLARRQLLDEFLGNE 146
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
L+I DE+H L R + +E +GL+AT ED
Sbjct: 147 FGLIIFDEVHHLPAP--------SYRRI--LELLSAAYPRLGLTATPE-REDG 188
|
Length = 442 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N LV PTG GKT + I + +++AP + L + +
Sbjct: 29 FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGK----VLFLAPTKPLVLQHAE----FCRK 80
Query: 1417 GLGM---RVVELTGETAMD--LKLLEKGQIIISTPE--KWDALSRRWKQRKYVQQVSLFI 1469
G+ + LTGE + +L K ++ ++TP+ + D + R VSL I
Sbjct: 81 VTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDD----VSLLI 136
Query: 1470 IDELH 1474
DE H
Sbjct: 137 FDEAH 141
|
Length = 542 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+ ++ PTG+GKT+ + AI + + + P + L + +
Sbjct: 54 TERRGVIVLPTGAGKTVVAAEAI----AELKR----STLVLVPTKELLDQWAEALKKFL- 104
Query: 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ-QVSLFIIDELH 1474
L + G K LE ++ ++T L+RR +++ + L I DE+H
Sbjct: 105 -LLNDEIGIYGGGE----KELEPAKVTVAT---VQTLARRQLLDEFLGNEFGLIIFDEVH 156
Query: 1475 LIG 1477
+
Sbjct: 157 HLP 159
|
Length = 442 |
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 0.001
Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 67/255 (26%)
Query: 59 RAFRGRPPELEEKLKKS------------AKKKKERDPDADAAAASEGTYQPKTKETRAA 106
RA R R PEL + L A + D D A AA G ++ +A
Sbjct: 51 RANRARLPELPKHLTDKEIALTRGLGDSMALRLACHDADCHAVAAPIG------QDAQAI 104
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDA------VKNPDKKKEI------EKL 154
++A+ + +G + V+ +L + A K +E EKL
Sbjct: 105 FDAVEQARVEAIGAAAMPGVAKNLSAMLEEKYDKANFSKRTDKEDAPLEEAVALLVREKL 164
Query: 155 LNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDD-------------DMGVA 201
P +++ + + + D AG D ++DD M +A
Sbjct: 165 TGDAPPDSAGKVLDLWR-----DEIEDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMA 219
Query: 202 VEF-----------EENDDDEEESDLDMVQEEDEEEEEDVAEPN----ASGAMQMG---- 242
E E+ DDD+ +++ D +E E D +E + G + G
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279
Query: 243 GGIDDDDESGDANEG 257
+D ES +++E
Sbjct: 280 AEASEDSESDESDED 294
|
Length = 620 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 775 EILQSHTDMVKSNDLKDLLP-YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E L LK P Y + H M +++ V + F +G V +LV+T + G
Sbjct: 462 EKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521
Query: 834 VNLPAHTVIIKGTQIYNPEK-GAWTELSPLDIMQMLGRAGRPQYDSY 879
V++P TV++ I + E+ G LS L Q+ GR GR + SY
Sbjct: 522 VDVPNATVMV----IEDAERFG----LSQLH--QLRGRVGRGDHQSY 558
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 25/129 (19%)
Query: 112 SVIQQQLGGQ-PLNIVSGAADEILAVLKNDAVKNPDKKKEI-----EKLLNPIPNHVFDQ 165
S +QQQ G+ P GA D+ L + ++ I + + Q
Sbjct: 174 SQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVL-----KQ 228
Query: 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDL----DMVQE 221
K A D + ++ D +++D+D ESDL D V +
Sbjct: 229 PKKQAKSSK----RRTIAQIDGIDSDDEGDGSD------DDDDEDAIESDLDDSDDDVSD 278
Query: 222 EDEEEEEDV 230
ED E+ D
Sbjct: 279 EDGEDLFDT 287
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2114 | |||
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.98 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.98 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.98 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.98 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.97 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.97 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.97 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.97 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.97 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.97 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.97 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.96 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.96 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.95 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.95 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.95 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.95 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.95 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.94 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.94 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.94 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.94 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.94 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.94 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.94 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.94 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.94 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.94 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.94 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.94 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.93 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.93 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.93 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.93 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.93 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.93 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.93 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.92 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.92 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.92 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.92 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.92 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.92 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.92 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.91 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.91 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.91 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.91 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.91 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.9 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.9 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.9 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.88 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.88 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.88 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.88 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.88 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.88 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.88 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.84 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.84 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.84 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.83 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.83 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.82 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.82 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.81 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.8 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.8 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.79 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.78 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.78 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.78 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.77 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.75 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.75 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.75 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 99.71 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.69 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 99.68 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.68 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.68 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.68 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.67 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.65 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.64 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.64 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.61 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.61 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.6 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.6 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.6 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.6 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.58 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.58 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.57 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.56 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.54 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.54 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.53 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.53 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.53 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.51 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.5 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.5 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.49 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.49 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.49 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.47 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.46 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.41 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.36 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.35 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.33 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.33 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.33 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.32 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.31 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.3 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.28 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.27 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.27 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.27 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.27 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.25 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.24 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.24 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.21 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.2 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.2 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.19 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.18 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.17 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.17 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.16 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.15 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.15 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.15 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.12 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.08 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.07 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.07 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.01 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.98 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.97 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.96 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.94 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.91 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.91 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.9 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.84 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.83 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.83 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.81 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.69 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.68 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.65 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.62 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.57 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.57 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.5 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.49 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.48 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.47 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.42 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.42 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.36 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.36 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.35 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 98.34 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.33 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.33 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.21 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.11 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.11 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 98.09 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 97.96 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.96 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 97.91 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 97.8 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.79 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.78 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.77 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.77 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.76 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.72 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.62 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.61 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.6 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.55 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.5 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.48 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.4 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.36 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.32 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.29 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.22 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.21 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.18 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.12 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.09 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.09 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.08 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 97.07 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.03 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.02 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.91 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.73 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.73 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.69 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 96.64 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.63 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.51 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.47 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.44 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.36 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.24 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.22 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.21 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.19 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.19 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.19 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.06 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.05 | |
| PRK06526 | 254 | transposase; Provisional | 96.03 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.99 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.98 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.93 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.91 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.82 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.82 | |
| PRK08181 | 269 | transposase; Validated | 95.77 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.76 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.73 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 95.72 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.64 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.64 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 95.64 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 95.61 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.53 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.52 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.47 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 95.43 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 95.41 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.37 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.37 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.31 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.3 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.29 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.25 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.18 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.04 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 95.04 | |
| PRK08181 | 269 | transposase; Validated | 95.01 | |
| PRK06526 | 254 | transposase; Provisional | 94.99 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.95 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.93 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.84 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 94.81 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.79 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 94.77 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 94.72 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 94.62 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 94.53 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.52 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 94.51 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.44 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.41 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 94.39 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.38 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 94.29 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 94.25 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 94.21 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.2 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.18 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.16 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 94.13 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 94.08 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.07 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 94.07 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.05 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.04 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 93.98 | |
| PRK08116 | 268 | hypothetical protein; Validated | 93.96 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.94 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 93.91 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.88 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.86 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 93.83 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 93.78 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 93.75 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 93.73 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 93.67 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 93.63 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 93.59 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 93.57 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 93.53 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.51 | |
| PRK08727 | 233 | hypothetical protein; Validated | 93.51 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 93.49 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.45 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 93.45 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 93.43 | |
| PRK08116 | 268 | hypothetical protein; Validated | 93.41 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 93.38 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 93.35 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 93.29 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 93.21 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 93.2 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.19 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 93.18 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 93.17 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 93.14 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 93.13 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 93.13 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.11 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 93.1 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 93.05 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 93.01 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 92.86 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.85 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.84 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 92.82 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.82 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.81 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 92.8 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 92.77 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.77 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 92.76 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 92.69 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.69 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 92.68 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 92.67 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 92.61 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 92.51 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 92.49 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 92.47 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 92.43 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 92.39 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.38 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 92.37 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 92.37 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.36 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 92.35 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 92.35 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 92.34 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 92.32 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 92.31 |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-288 Score=2643.28 Aligned_cols=1580 Identities=67% Similarity=1.070 Sum_probs=1454.2
Q ss_pred HHHhhhhhccccccccccCCCcCCCCCCCCCCCcceeecCCCCCccccccccccCCCcchhhhhccCCCCccccccCCCC
Q 000129 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (2114)
Q Consensus 166 l~~l~k~ItDy~~~~~~~~~~~~~~~~~~d~~~gV~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2114)
||+|+|+||||...++. .+..+..+++..||+|.|++.|++++++..+.++++.++|++...+......++-....
T Consensus 1 lV~l~k~itdy~~~~~s----k~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDS----KKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCc----hhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 58999999999654432 12234556777899999998877776443444543332221111000011111111111
Q ss_pred CCCCCCCCcCCCCCCCcccCChHHHHHHHHhHhccCCChHHHHHHHHHHHHHHhc-CChhHHHHHHHhccCCCChhHHHH
Q 000129 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (2114)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (2114)
+. ++..++ ....+++||++||||+|++.|. ++..+|+....+..+|+. .+++++|++|+.++.|++|.||+.
T Consensus 77 k~-el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 KT-ELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred cc-hhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 11 100001 1145899999999999999999 777777777777777777 689999999999999999999999
Q ss_pred HHhchhhhHhHhhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHH-HHhhhhhHhHHHHHHhhhccccCCCCC
Q 000129 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRLKDESASDGGR 403 (2114)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (2114)
|++||++|+|||+|++|..++|+..|++.|+..+..+..++.++..+..... +..+.. +.++.+ .++..
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~-~l~~~e--~~~~~------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEK-KLEKRE--ELLVS------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhh-hhhccc--hhhhh-------
Confidence 9999999999999999988899999999999986336788888876543221 110110 011101 11110
Q ss_pred CCCCCccCCCCCCCcCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCC
Q 000129 404 DRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMP 483 (2114)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp 483 (2114)
.....++...+|...++++|++.++|++|++.|.+++|.+|+||++..+++|+|+|||++...||..++++..++++|
T Consensus 220 --~~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP 297 (1674)
T KOG0951|consen 220 --VIALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELP 297 (1674)
T ss_pred --hhhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCc
Confidence 001111223346788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
+|.+++|.|..+||++|++++++++.+++|+++|||||+|||++|++.||+.+..+.+.+|..+..++|++|++|+++||
T Consensus 298 ~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 298 KWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred chhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhH
Q 000129 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
++++..|++++.++||+|.++|||.+.+.+++.+++||||||||||.++|+..++.+.+.++++||||+|++||+|||++
T Consensus 378 qE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvL 457 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVL 457 (1674)
T ss_pred HHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHH
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+|++|+.+..+.....+|++|||||||||+||+.||++++ .++|+|+++|||||+.|+++|+++++..+++++||+.|
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
|++++++.+++|+|||||||++|.++|+.+++.+...+++..|+++++.++++++.+++...+..|++++++|||+||||
T Consensus 537 yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|++.+|..+|++|++|+++|||||.|+|||||+|+++|||+||++|||++|+|.++|+.+.+||.||||||++|+.|+++
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccch
Q 000129 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963 (2114)
Q Consensus 884 il~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~ 963 (2114)
|++.+++.++|++++++|+||||++.++|.|.|||||++| +++.+++++||+|||+|+||.+||++|+++++ ..|..
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~ 773 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRL 773 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999997 34889
Q ss_pred hhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCc
Q 000129 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043 (2114)
Q Consensus 964 l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~ 1043 (2114)
+++++.+++|+|+..|+++|+|.||+.+|.+++|++|+|+|+|||.+.+|..|++.|+++|++++++++|++|+||++++
T Consensus 774 le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~s 853 (1674)
T KOG0951|consen 774 LEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVS 853 (1674)
T ss_pred HHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHH
Q 000129 1044 VRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123 (2114)
Q Consensus 1044 ~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~ 1123 (2114)
||++|+.+|++|++++|||+++.+++|++|||+|||+|||+++++||+|.+||+||.|+|+|++||+|||++++||++++
T Consensus 854 vr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~ 933 (1674)
T KOG0951|consen 854 VREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLA 933 (1674)
T ss_pred ccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhcCCceeEEE
Q 000129 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAA 1203 (2114)
Q Consensus 1124 ~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~ 1203 (2114)
..+|++|||+++|||+.++|||||+++|.++++++|++.++|.+++||++.|+++++|.|++|+.++.++++||++.+++
T Consensus 934 ~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~ 1013 (1674)
T KOG0951|consen 934 QMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSA 1013 (1674)
T ss_pred HHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCceEEEEEEEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEE
Q 000129 1204 HVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFI 1283 (2114)
Q Consensus 1204 ~~~~~~~~~l~~~l~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v 1283 (2114)
++|||||+.++++|+|+|+|.||+++||..++||++|||.||++|+|+++|.++++ +|++.|++|+++| ||+|||
T Consensus 1014 ~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi 1088 (1674)
T KOG0951|consen 1014 HVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFI 1088 (1674)
T ss_pred eeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEE
Confidence 99999999999999999999999999999999999999999999999999999984 9999999999999 999999
Q ss_pred EEeccccccCcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEE
Q 000129 1284 RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363 (2114)
Q Consensus 1284 ~~vSD~wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ 1363 (2114)
+++||+|+++++.+|+||+|+++|+++||||+++|++|+|+++|.|+.+..+|.. +||+|+|+|+.+|++++|++|+
T Consensus 1089 ~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~---~n~iqtqVf~~~y~~nd~v~vg 1165 (1674)
T KOG0951|consen 1089 RLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQD---FNPIQTQVFTSLYNTNDNVLVG 1165 (1674)
T ss_pred EEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccc---cCCceEEEEeeeecccceEEEe
Confidence 9999999999999999999999999999999999999999999999999999874 4999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEE
Q 000129 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443 (2114)
Q Consensus 1364 ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV 1443 (2114)
||+|||||.|+++++++ . ...+ +++||+|..+.+..++..|.++|+..+|+.++.++|+.+.+.+.++.++|+|
T Consensus 1166 a~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii 1239 (1674)
T KOG0951|consen 1166 APNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVII 1239 (1674)
T ss_pred cCCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEE
Confidence 99999999999999996 2 2333 9999999999999999999999999999999999999999999999999999
Q ss_pred EChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcC
Q 000129 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA 1523 (2114)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~ 1523 (2114)
+||++|+.+ + .+|.++++|.||+|++++..|+.+|++++ |++|++|+.+++|++++|.+++|++|+ +|.
T Consensus 1240 ~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1240 STPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred echhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccc
Confidence 999999987 2 58899999999999999889999999999 999999999999999999999999999 999
Q ss_pred CCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1524 TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1524 ~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...++|||.|+.||+|++++++++...++.+++.+|.++.|.++..+...++|++||+|+|+.|+.+|..++.++.++..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999998876632
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEE
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~ 1683 (2114)
. ++....++ .+..+++.+.+||+ |.||+..++..+-.+|..|.|+|+|.... ++|+-..+..||+|
T Consensus 1389 ~---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm 1454 (1674)
T KOG0951|consen 1389 D---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM 1454 (1674)
T ss_pred H---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe
Confidence 2 22211111 67889999999999 99999999999999999999999999999 99999999999999
Q ss_pred eeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH--------------------------
Q 000129 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------------------------- 1737 (2114)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l-------------------------- 1737 (2114)
||++|||++|.+.+||+++++||+|+|.| .|+|+++|+.++++||++|+
T Consensus 1455 gt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~t 1529 (1674)
T KOG0951|consen 1455 GTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKT 1529 (1674)
T ss_pred cceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999988 68999999999999999999
Q ss_pred ------------------HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhccc
Q 000129 1738 ------------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799 (2114)
Q Consensus 1738 ------------------Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i 1799 (2114)
|+..||+||++.+++++++|+++|+++++++.+|++++||++++.+. .+|+|+++||+
T Consensus 1530 ienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~----~l~~Ias~y~i 1605 (1674)
T KOG0951|consen 1530 IENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD----SLGMIASYYYI 1605 (1674)
T ss_pred HHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc----ccchhhhhcee
Confidence 89999999999999999999999999999999999999999987655 39999999999
Q ss_pred CHhHHHHHHhhcCCCCChhhH
Q 000129 1800 SYTTIERFSSSLTPKTRMKGL 1820 (2114)
Q Consensus 1800 ~~~T~~~f~~sl~~~~~~~~i 1820 (2114)
++.|+..|..+++.+++.+++
T Consensus 1606 ~y~ti~~f~~~L~~~t~~kgl 1626 (1674)
T KOG0951|consen 1606 SYITIERFSSSLSEKTKMKGL 1626 (1674)
T ss_pred eeEeeehhhhhhhhhhhhhhh
Confidence 999999999988888777666
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-196 Score=1808.39 Aligned_cols=1191 Identities=49% Similarity=0.809 Sum_probs=1123.9
Q ss_pred cCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCC
Q 000129 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2114)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2114)
..+++++|--.+.+.. .-++.+.++.+|+|+.+...+.|||+.+|+..+.+ ....++++|++||+..+..|.+|++||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 4456777755444433 23456679999999999999999999999988777 666788899999999998888999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (2114)
.+|+.|||.++++++|+|||||||||||.+|+|+||+.+.++.. .+.+..+++|+|||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~-~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE-QGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc-ccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999998432 36677789999999999999999999999999999
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccC-CCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhh
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~ 656 (2114)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.|++|+++.++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999989999999999999999999984 4567899999999999999999999999999999999999
Q ss_pred ccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhC-CCe
Q 000129 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (2114)
Q Consensus 657 ~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 735 (2114)
.+..+|||||||||||++|+|.||++++..++|+|+..|||+|+.+.++|.+.++.......+.+.+|+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999998886666778889999999988766 789
Q ss_pred EEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHH
Q 000129 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (2114)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~ 815 (2114)
++||||+|++|.++|+.|.+.+........|++. ..++.|+++++.|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~--------------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS--------------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCC--------------hhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999999998777666555543 25668899999999999999999999999999
Q ss_pred HhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
|..|.++|||||+|+|||||+||+.|||+||+.||..+|++.++++.|++|++|||||||||+.|.++|+|+.+.+++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHH
Q 000129 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (2114)
Q Consensus 896 ~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (2114)
+++.++.||||+|..+|.|||||||++|||+++++|++||+|||+|+||.+||..||+..+.+..||.++.++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHH
Q 000129 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (2114)
Q Consensus 976 l~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l 1055 (2114)
+..|.+..||.+|..++.+.+|++||+||+|||+++||+.|++..++.+++.++|+++|+|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC-C-CCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 000129 1056 LDRV-P-IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (2114)
Q Consensus 1056 ~~~~-~-~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~ 1133 (2114)
++.. . +|... ...|+|+|+|+|||+..+..|+|++|..|+.|||+||.||+|+++..++|+.++.+++.|||||
T Consensus 658 ~~~~~~~~~~~~----~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~i 733 (1230)
T KOG0952|consen 658 NEDSCEKYPFGG----EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRI 733 (1230)
T ss_pred Hhcccccccccc----cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 9762 2 23322 2899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhcCCceeEEEEEeeccCceE
Q 000129 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213 (2114)
Q Consensus 1134 ~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~~l 1213 (2114)
+++||...+||+||++... ++ ++++. ++.+|...++|+++.+.++| ++.++.+|.+++++.++|+|++++
T Consensus 734 er~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vl 803 (1230)
T KOG0952|consen 734 ERRMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVL 803 (1230)
T ss_pred HHHHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhh
Confidence 9999999999999998776 55 55543 78899999999999988888 889999999999999999999999
Q ss_pred EEEEEEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccC
Q 000129 1214 KVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGS 1293 (2114)
Q Consensus 1214 ~~~l~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~ 1293 (2114)
+|.+.++|+|.|++.+||++.-+ +|++|.+...|+|++.+.+.++..++.+.+.|++|+++|+|+++.++.+||.|+++
T Consensus 804 ri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~ 882 (1230)
T KOG0952|consen 804 RIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGA 882 (1230)
T ss_pred eeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCC
Confidence 99999999999999999997666 99999999999999999999988889999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHH
Q 000129 1294 QTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373 (2114)
Q Consensus 1294 e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~ 1373 (2114)
+..+++||+|+++|+..++.|++++++|+|..+|.+..++.+|+ .|+|+|++.|..+|+.+.|+++.+|||||||++
T Consensus 883 e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ 959 (1230)
T KOG0952|consen 883 ETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVV 959 (1230)
T ss_pred ceeccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhcCCccCcchhH
Confidence 99999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHH
Q 000129 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453 (2114)
Q Consensus 1374 ~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~ 1453 (2114)
|++++++.+.. .+.+ +++||+|.++|+.+..++|..++... |++++.++|+...+...+..++++|+||++|+.++
T Consensus 960 ae~a~~~~~~~-~p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~ 1035 (1230)
T KOG0952|consen 960 AELAIFRALSY-YPGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS 1035 (1230)
T ss_pred HHHHHHHHhcc-CCCc--cEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcc
Confidence 99999998887 4555 99999999999999999999888766 99999999999999899999999999999999999
Q ss_pred hhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCC
Q 000129 1454 RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPP 1533 (2114)
Q Consensus 1454 r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~ 1533 (2114)
|.|..++.+++++++|+||.|++++++||++|.+++++.+++.+++.++|++++|..+.|+.|+++|++.... +||.+
T Consensus 1036 Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~ 1113 (1230)
T KOG0952|consen 1036 RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRP 1113 (1230)
T ss_pred ccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 99999
Q ss_pred CCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCc
Q 000129 1534 GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2114)
Q Consensus 1534 ~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (2114)
+.||+|+++++++++..+++.++..|++|++.++..+ ++.+|+|||+.+|++.+.+|..|+..+..+.++.+ |++.++
T Consensus 1114 svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~-fl~~de 1191 (1230)
T KOG0952|consen 1114 SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ-FLNMDE 1191 (1230)
T ss_pred ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeecccccccchHhHHhhccCCCCchh-ccCCCH
Confidence 9999999999999999999999999999999999988 99999999999999999999999999999999988 999999
Q ss_pred ccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
.+++.+...++|..|+.++++|++.||+|+...||..+
T Consensus 1192 ~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1192 LELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 99999999999999999999999999999999998653
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-88 Score=848.83 Aligned_cols=749 Identities=28% Similarity=0.484 Sum_probs=658.3
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC------CCceEEEEEcccHHHHHHHHHH
Q 000129 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE------TGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1336 ~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~------~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
|.|...||++|+.+.++++.+++|+++|||||+|||.++.+.|++.+..+.. -+.++++||+|+++||+++...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999987633 2246999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
|.+++..+ |++|+.+||+.......+..+.|||||||+||.+.|+...+...+-++++|+||+|++.++|||.+|.++.
T Consensus 384 fSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 384 FSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred HHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 99888875 99999999999988888999999999999999999987777788899999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1569 (2114)
|+..-........|++|||||+||..|++.|+++...++|.|.+++||+|+...+.+....+...++.+|+...|..+++
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~ 542 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE 542 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHH
Confidence 99888777778999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC---cccchhhHhhhhHHHHHHHhccceEeecCCCCHH
Q 000129 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP---AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1570 ~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~---~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
+ ....|+||||.||+++.++|+.+...|...+...+ |+..+ .+-+........+..|++.+.+|+++||+||+..
T Consensus 543 ~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~-fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 543 H-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSR-FMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred h-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHH-HHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 9 45599999999999999999999877665544444 44332 2333444667778899999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+|..++++|+.|.++|||+|.+++||||+|+++|||+||+.|++..++..+.++.+.+||.|||||+++|..|..++.+.
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHH-------------------------------------------HhccCCCCccccCCCccch-HHHHHH
Q 000129 1727 APRKEYYKKFL-------------------------------------------RLTQNPNYYNLQGVSHRHL-SDHLSE 1762 (2114)
Q Consensus 1727 ~~~~~~~~~~l-------------------------------------------Rl~~nP~~y~l~~~s~~~l-~~~lse 1762 (2114)
.++..+|...+ |+.+||..|++........ ...-.+
T Consensus 701 ~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~ 780 (1674)
T KOG0951|consen 701 HSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRAD 780 (1674)
T ss_pred chHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhh
Confidence 99988887755 8899999998875544332 333458
Q ss_pred HHHHHHHHHHHCCCceecCCC-ccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHH
Q 000129 1763 LVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEE 1841 (2114)
Q Consensus 1763 lve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~ 1841 (2114)
+++++...|.++++|..+... .+.+|.+|+|+|+|||.+.+|..+.+.|++.+...+++.+++.+.||..+++|.+|+.
T Consensus 781 lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~ 860 (1674)
T KOG0951|consen 781 LVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKM 860 (1674)
T ss_pred hHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHH
Confidence 999999999999999987644 4999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000129 1842 VVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEV 1920 (2114)
Q Consensus 1842 ~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp-~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L 1920 (2114)
.|+++..++|++.. ..++.|..|+++|||+|+|++.+. ..|..|+.+|-..|.|+++|+.+|+..+||...+.-++.+
T Consensus 861 el~~l~~~vpIpir-e~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ 939 (1674)
T KOG0951|consen 861 ELAKLLERVPIPIR-ENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNL 939 (1674)
T ss_pred HhhhhcccCCcCch-hccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHh
Confidence 99999999999875 458889999999999999999998 5789999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEE
Q 000129 1921 SQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFE 2000 (2114)
Q Consensus 1921 ~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~ 2000 (2114)
++|+.+.+|+...||.|.|++..+.++++..+. + ....+..+++.+...+.+. ++.+.-+..|+.+||++.+...
T Consensus 940 ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~---~-~~~r~~~l~~~elg~lI~~-~k~G~~l~~~~~~fpk~s~~~~ 1014 (1674)
T KOG0951|consen 940 CKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKE---L-PWGRYYDLDPAELGELIGV-PKMGKPLHLFIRQFPKLSVSAH 1014 (1674)
T ss_pred HhHhhhhcccccCchhhcCCCCHHHHHHHHhcc---C-cchhhhccCHHHHHHHhcC-cccChhHHHHHHhcccceeeee
Confidence 999999999999999999999999999998876 2 3445555667777666652 2344566789999999999988
Q ss_pred EeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccccEEEEEEEecCC
Q 000129 2001 VQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAE 2080 (2114)
Q Consensus 2001 v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~p~~ 2080 (2114)
+.. |+ -..+.+.+.++.+.+. + ..||. -.|.+|++|.|....+++...-.-+.+. ...+.|++|-.
T Consensus 1015 vqp---it-r~~~~~~l~i~~~f~w--d-~~vh~------~~e~F~i~ved~dge~il~~e~~~~~k~-~~~v~ft~~~~ 1080 (1674)
T KOG0951|consen 1015 VQP---IT-RSVYRVELTITPDFDW--D-DKVHG------SVEPFWIIVEDTDGEKILHHEFFLLKKK-EHTVNFTVPLF 1080 (1674)
T ss_pred eee---ee-eeEEEEEEEEeecccc--h-hhhcc------cccceEEEEEccCccceeeeeeEEeccC-ceEEEEEeecC
Confidence 864 22 3456677777765532 2 24663 3478999999999989888655555444 67888999866
Q ss_pred CCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2081 AGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2081 ~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
.|...|.+.++||-|+|.....++.|.
T Consensus 1081 ~~pP~~fi~lvSd~wl~s~~~~Pvsfr 1107 (1674)
T KOG0951|consen 1081 EPPPQYFIRLVSDRWLHSETVLPVSFR 1107 (1674)
T ss_pred CCCCceEEEEeeccccCCCcccccchh
Confidence 667789999999999999999888765
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-86 Score=899.37 Aligned_cols=663 Identities=25% Similarity=0.365 Sum_probs=551.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++.+.| .||.+|+|+|.+|++..+.+++|++++||||||||++|++|+++.+..+ .++||++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-----------~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-----------GKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-----------CcEEEEeCh
Confidence 689999988 5899999999999998777888999999999999999999999998532 389999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|+++.|++ +..+|++|..++|+..........++|+|+|||+|+.+.|+.. .+++++++|||||+|++.+ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999996 4556999999999987766666788999999999999998753 5788999999999999998 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
||+.+|.+++++.+ ..+.+|+|+||||++|.++++.|++.. .+...+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998754 356789999999999999999999864 25778899998765432111000000000
Q ss_pred hh----HHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCch-hHHH---HHhhhcccCcchh
Q 000129 719 MN----DLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV-SREI---LQSHTDMVKSNDL 789 (2114)
Q Consensus 719 ~~----~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~-~~~~---l~~~~~~~~~~~L 789 (2114)
+. ...+..+.+. ..++++||||+||+.|+.+|..|....... +...+.. ..+. +........+..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 00 1222223332 247899999999999999999998754211 0000000 0011 1111222346778
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
..++..||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||+++..||+.. ++.+++..+|+||+|
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~G 377 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAG 377 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999876 468999999999999
Q ss_pred ccCCCCCCCceEEEEEcCCCc--HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhh
Q 000129 870 RAGRPQYDSYGEGIIITGHSE--LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~e--~~~~~~ll-~~~~pies~l~--~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2114)
||||+|+|..|.+|+++...+ ..+|.+++ ..+.|++|++. ..+.+++++||+.|++.+.+|+++|++|||+|++.
T Consensus 378 RAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 378 RAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred cCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 999999999999999998752 34567776 58899999995 47999999999999999999999999999998752
Q ss_pred ccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC
Q 000129 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2114)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2114)
. ..+++.++|+++++.|.++|||..+ ++.+.+|++|+++|+|||+|.|+..|.+.++...
T Consensus 458 ---~---------------~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~ 517 (737)
T PRK02362 458 ---D---------------DTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAK 517 (737)
T ss_pred ---c---------------chHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcc
Confidence 0 1245678999999999999999975 3669999999999999999999999999888764
Q ss_pred --CHHHHHHHhhCCccCCCCcCChhHHHHHHHHh--------ccCCCCCCCC-CCC--hhHHHHHHHHHHHhcccC----
Q 000129 1025 --GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKL---- 1087 (2114)
Q Consensus 1025 --~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~--------~~~~~~~~~~-~~~--~~~K~~~llq~~i~~~~~---- 1087 (2114)
+..++|.++|.++||..+++|++|...|.++. .++|.+.++. ++. +..|+++|||+||++.++
T Consensus 518 ~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~ 597 (737)
T PRK02362 518 KPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERIT 597 (737)
T ss_pred cCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 78999999999999999999999999998875 4556554432 233 788999999999999995
Q ss_pred CCCcc-cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-ch
Q 000129 1088 EGLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2114)
Q Consensus 1088 ~~~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2114)
+.|++ .+|+..++++|.||++|+++||.. +|..++..+++|++|+.+++|++.+||.|+||++++++++|++.|+ ++
T Consensus 598 ~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~ 676 (737)
T PRK02362 598 ERYGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESR 676 (737)
T ss_pred HHhCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCH
Confidence 35777 589999999999999999999876 4557799999999999999999999999999999999999999998 67
Q ss_pred hhhccCChHHhhhhhcCchhHHHHHHHHhcC
Q 000129 1166 ERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (2114)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1196 (2114)
+++..+++++|..++| ++.++.|.+.+..+
T Consensus 677 ~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 677 ADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred HHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 8888889999999987 67888888887744
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-86 Score=824.07 Aligned_cols=756 Identities=28% Similarity=0.459 Sum_probs=628.5
Q ss_pred cCCCCCCCCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1304 l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
.+.|...|++ ...-.++.++.|.. .++.-|.+|.+||.+|+.||+.+|+++.|.|||||||||||.+|+|+||+.+.
T Consensus 76 ~~~P~s~~~~--~~~~k~~~isdld~-~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 76 VKIPASVPMP--MDGEKLLSISDLDD-VGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EecCccCCCc--cccccceeEEecch-hhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3456655555 33345566666653 45433345999999999999999999999999999999999999999999998
Q ss_pred hcc-----CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcc
Q 000129 1384 KAS-----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458 (2114)
Q Consensus 1384 ~~~-----~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~ 1458 (2114)
+.. ..+.+|+|||+|++|||.++++.|.++|+.. |++|..+|||+......+..++|||+|||+||.+.|+|..
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 631 2345799999999999999999999999874 9999999999988766789999999999999999999876
Q ss_pred cc-cccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCC-CCceeecCCCCC
Q 000129 1459 RK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVR 1536 (2114)
Q Consensus 1459 ~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~-~~~~~~f~~~~r 1536 (2114)
.. .++.|+||||||+|+|.++|||++|.+++|+.+........+||||+|||+||..|+|.||+++ ..++|.|...+|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 54 5778999999999999999999999999999988777778999999999999999999999997 578999999999
Q ss_pred ccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccc
Q 000129 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2114)
Q Consensus 1537 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2114)
|+|+...+.+............+....+..+.+.+.++.+++|||++|..+..+|+.|++.....+.... |+..
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~-f~~~----- 385 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL-FLPS----- 385 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc-cCCC-----
Confidence 9999999998887766666677788889999999999999999999999999999999887765554433 3322
Q ss_pred hhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCC
Q 000129 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2114)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~ 1696 (2114)
-.++.+.++...|+++||+||..+||..+++.|..|.++|||||++++||+|+|+..|||+||+.||...+...
T Consensus 386 ------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~ 459 (1230)
T KOG0952|consen 386 ------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFV 459 (1230)
T ss_pred ------hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCcee
Confidence 25678899999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH---------------------------------------
Q 000129 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL--------------------------------------- 1737 (2114)
Q Consensus 1697 ~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l--------------------------------------- 1737 (2114)
++.+.+++|+.||||||+||..|.++++++..+.+.|..++
T Consensus 460 dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~y 539 (1230)
T KOG0952|consen 460 DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKY 539 (1230)
T ss_pred eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhc
Confidence 99999999999999999999999999999999999999888
Q ss_pred -----HhccCCCCccccC---CCccchHHHHHHHHHHHHHHHHHCCCceecCCC-ccccCcccchhhhcccCHhHHHHHH
Q 000129 1738 -----RLTQNPNYYNLQG---VSHRHLSDHLSELVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFS 1808 (2114)
Q Consensus 1738 -----Rl~~nP~~y~l~~---~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~i~~~T~~~f~ 1808 (2114)
|+.+||.+|++.. .....+..+..+++-.++..|.+..+|..+... .+.+|.+|++||+|||+|.||+.|.
T Consensus 540 TylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~n 619 (1230)
T KOG0952|consen 540 TYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFN 619 (1230)
T ss_pred eeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHH
Confidence 9999999999864 244557788999999999999999999887644 5999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhH
Q 000129 1809 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQ 1887 (2114)
Q Consensus 1809 ~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp-~~l~~D~ 1887 (2114)
+..+...+..++|.++|.|.||+.+.+|++|++.|++|+...-.+.. +...+-|+++|+|+|++|-.+- ..|..|.
T Consensus 620 n~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~---~~~~~gk~nil~q~~Is~~~~~~f~L~sD~ 696 (1230)
T KOG0952|consen 620 NLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYP---FGGEKGKVNILLQAYISRTEVKDFSLMSDS 696 (1230)
T ss_pred hcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccccccc---ccccchhHHHHHHhhhhccceeeeeeccCc
Confidence 98888999999999999999999999999999999999876433322 1112789999999999998876 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCC
Q 000129 1888 EEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEME 1967 (2114)
Q Consensus 1888 ~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~ 1967 (2114)
..+.++|.||.+|+.++....+|..-+.+++.|++||.-.+|+...+|.|++..-. ++ .+.+ . .+..|.
T Consensus 697 ~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~---~~-~~~~----~---~l~~L~ 765 (1230)
T KOG0952|consen 697 LYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLN---RK-ERKK----L---TLLLLR 765 (1230)
T ss_pred ccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc---hh-hhhc----c---hHHhhh
Confidence 99999999999999999999999887788899999999999999999999998766 33 3333 1 344444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEE
Q 000129 1968 DDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWL 2047 (2114)
Q Consensus 1968 ~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwl 2047 (2114)
-++...+....+ ...+.+..+|.++++..+..- .-....+.|.+.++.+. .. .+|-+ . |-.+
T Consensus 766 ~~~~g~~w~~~~----~~~k~l~~ip~v~v~a~~~p~----t~~vlri~~~~~~~f~w--~~-~~hg~---~----g~~i 827 (1230)
T KOG0952|consen 766 KDELGELWHNVP----YGLKQLSGIPLVNVEALIQPI----TRNVLRIEVAITPDFEW--ND-GIHGK---A----GQPI 827 (1230)
T ss_pred hhhhccccccCc----hhhhhhccCCceehhhhhccc----hhhhheeeeccCCceEE--ec-ccccc---c----Ccee
Confidence 444444443222 127889999999887655321 11234455555553311 11 23322 1 1127
Q ss_pred EEEECCCCeEEEEEEeeccc---ccEEEEEEEecC-CCCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2048 VVGDTKTNQLLAIKRVSLQR---KSRVKLDFAAPA-EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2048 vvgd~~~~~L~~~krv~~~~---~~~~~l~f~~p~-~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
++.|...+.++.++...+.. ..+.-+.|..|- .|=.-++..+..||.|+|++..+.+.+.
T Consensus 828 ~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~~ 891 (1230)
T KOG0952|consen 828 FKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSFQ 891 (1230)
T ss_pred EeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceecccccc
Confidence 78888888888887776542 233456666663 3445678999999999999999988754
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-83 Score=861.21 Aligned_cols=658 Identities=26% Similarity=0.377 Sum_probs=533.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|+++.+.+ .||++|||+|.++++..+.+++|++++||||||||++|++|+++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 578888887 6999999999999998777788999999999999999999999987642 2389999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|+++.|.. +..+|++|..++|+..........++|+|+|||+|+.+.+... .+++++++|||||+|++.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999987 4567999999999987766666789999999999998888643 5689999999999999987 6
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEe-----eccCchh
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----IQVKKPL 713 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-----~~~~~~~ 713 (2114)
||+.++.+++++ ....|+|++|||++|.++++.|++... +...+||+++...... .......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998642 4667899988653221 1111111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc--hhHHHHHhhhcccCcchhhh
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS--VSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... ...+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 111334444444443 3679999999999999999998765321 111100 01111111122345677899
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
++..||++|||||++++|..+++.|++|.++|||||++++||||+|+++|||+++..|+. .++.+++..+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999972 346788999999999999
Q ss_pred CCCCCCCceEEEEEcCCCc-HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccC
Q 000129 872 GRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e-~~~~~~ll-~~~~pies~l~--~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2114)
||+|+|..|.+++++...+ ..+|.+++ ..+.++.|.+. +.+.++++++|+.|++.+.+|+++||+|||+|. +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998765 34565553 23334444443 356889999999999999999999999999995 46
Q ss_pred CcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCC---CC
Q 000129 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (2114)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~---~~ 1024 (2114)
|.+|++ .+++++++..|.+++||..+. ++.+.+|++|+++|+|||+|.|+..|.+.++. ..
T Consensus 448 ~~~~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 766642 246788999999999999864 36799999999999999999999999998876 67
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHHH--------HhccCCCCCCCCCCC--hhHHHHHHHHHHHhcccCC----CC
Q 000129 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAK--------LLDRVPIPVKESLEE--PSAKINVLLQAYISQLKLE----GL 1090 (2114)
Q Consensus 1025 ~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~--------l~~~~~~~~~~~~~~--~~~K~~~llq~~i~~~~~~----~~ 1090 (2114)
+..++|+++|.++||..+++|++|...|.+ +..++|.+....+.. +..|+++|||+|||+.+++ .|
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~ 591 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETY 591 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 889999999999999999999999988883 333344322222233 7899999999999999873 34
Q ss_pred ccc-chHHHHHHhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhh
Q 000129 1091 SLT-SDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWER 1167 (2114)
Q Consensus 1091 ~l~-~d~~~i~~~a~rl~~a~~ei~~~~~~~-~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~ 1167 (2114)
+.. +|+..++++|.||++|+++|+...||. .....+.+|++||.|++|++++||.|+||+|++++++|.++|+ ++++
T Consensus 592 ~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~ 671 (720)
T PRK00254 592 NIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIED 671 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHH
Confidence 444 899999999999999999999977763 3334445899999999999999999999999999999999998 7888
Q ss_pred hccCChHHhhhhhcC-chhHHHHHHHHhc
Q 000129 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (2114)
Q Consensus 1168 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 1195 (2114)
+...++++|..+.|. ++.++.|++.++.
T Consensus 672 i~~a~~~el~~~~gi~~~~a~~i~~~~~~ 700 (720)
T PRK00254 672 IVNAKPSELLKVEGIGAKIVEGIFKHLGV 700 (720)
T ss_pred HHhCCHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 888899999998443 5788888888773
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-84 Score=852.63 Aligned_cols=738 Identities=35% Similarity=0.473 Sum_probs=620.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+.++ +.|+|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 455566665 5666777767667766666689999999999999999999999999875 3489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC-
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~- 638 (2114)
||||.|++++|+ ++..+|++|++.|||.......+..++|+|+||||||+++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788899999999999999998899999999999999999999874 8999999999999999996
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
||+++|.|++++++. ...+||||||||+||++++|.|+++++....+++.+.+++++..+.+++...... .....
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999653 3458999999999999999999999987788899999999999999888775543 22223
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
....++..+.++.. ++|+|||||||+.|..+|+.++........-..+.........+...+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34455666666555 77999999999999999999996432221111111111111222222334445688999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
++|||||++++|..+++.|++|.++|||||+|||||||+|+.+|||+++..|++.. ++.++++.+++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~-g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG-GIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC-CeEECchhhHhhccCcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999954 49999999999999999999999
Q ss_pred CceEEEEEc-CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcc
Q 000129 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (2114)
Q Consensus 878 ~~G~~iil~-~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~ 956 (2114)
..|.+++++ +..+..++.+...++.|.+ +.+.+.+..+++..++++.+..++++|+.+||+|.|++.+|..|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5566667766666666644 566666667999999999999999999999999999999999987521
Q ss_pred cccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC---CHHHHHHHh
Q 000129 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (2114)
Q Consensus 957 ~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~~~~l~i~ 1033 (2114)
....+..++..|.++++ ..+.....+.+|++|+.+|+|||++.|++.|.+.+.... +..+++.++
T Consensus 474 -----------~~~~i~~~~~~L~~~~~-~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGL-ILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccc-eeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 22567889999999872 233446789999999999999999999999998776554 889999999
Q ss_pred hCCccCCCCcCChhHHHHH--HHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHH
Q 000129 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (2114)
Q Consensus 1034 s~s~ef~~i~~r~~e~~~l--~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ 1111 (2114)
|+++||..+++|.++..++ ..+.+..++...+...++..|.+.++|++.+...+.+|....|..+|.++.++...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999885 55566677777777778899999999999999999989999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCCchhhhccCCh-HHhhhhhcCchhHHHHH
Q 000129 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSP-QELGELIRFPKMGRTLH 1190 (2114)
Q Consensus 1112 ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 1190 (2114)
.++....|. .+. ++.|++++.++.|....++.|+ .++..+..+++ .|..-+++.++.. ..++. ++..+.....+
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie-~gv~~e~~~~l~~i~~~gr-vrar~ly~~g~ 696 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE-YGVRSEELLELVEIRGVGR-VRARKLYNAGY 696 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh-cCCChhhhcccccccccch-hHHHHHHHhhh
Confidence 999999999 555 9999999999999999999999 78877777775 4443256666643 33344 66677888888
Q ss_pred HHHhcCCceeEEEEEeeccCceEEEEEEEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeee
Q 000129 1191 KFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258 (2114)
Q Consensus 1191 ~~~~~~P~~~~~~~~~~~~~~~l~~~l~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~ 1258 (2114)
+.++.+|.....+.+.|++....++.-.|.+.+.|....|+..+.||+.+.+.++..++|.+.+.+..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (766)
T COG1204 697 KSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILAG 764 (766)
T ss_pred ccHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccCC
Confidence 88999998888888888888777777788899999999999999999999999999999998876543
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-81 Score=846.99 Aligned_cols=631 Identities=26% Similarity=0.366 Sum_probs=520.7
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
...+.+.. ||.+|+|+|++||+..+.+++|++++||||||||++|++|+++++.. ++ ++|||+|+++||.|+++
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~--kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GG--KALYIVPLRALASEKFE 85 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CC--cEEEEeChHHHHHHHHH
Confidence 33444433 79999999999999977778899999999999999999999999864 45 89999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHH
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVI 1487 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i 1487 (2114)
+|+ +|+.. |++++.++|+...+.+.+..++|+|||||+|+.++|++ ..+++++++||+||+|++++ .+|+.+|.+
T Consensus 86 ~~~-~~~~~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 86 EFE-RFEEL-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred HHH-HhhcC-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHHHHH
Confidence 999 57654 89999999998877666778899999999999999863 34689999999999999987 589999999
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC----HHH
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT----KPT 1563 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~----~~~ 1563 (2114)
+++++++ ....|+|++|||++|++++++|++... +.+.+||+++...+.......+......+. ...
T Consensus 162 l~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 232 (737)
T PRK02362 162 LAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDT 232 (737)
T ss_pred HHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccchHH
Confidence 9999876 457899999999999999999998763 677889999987765332222221111111 344
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhh-------hHHHHHHHhccce
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI-------QEEMLKATLRHGV 1636 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i-------~d~~L~~~l~~gV 1636 (2114)
+..+...+..++++||||+||+.|+.+|..|...+..... ......+..+.+.+ .+..|..++..||
T Consensus 233 ~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 233 LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLT------AAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 5555555567899999999999999999999775432100 00112233333333 4567889999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
++|||||++.+|..|++.|++|.++|||||++++||||+|+++|||+||++|++.. ...|++..+|+||+|||||+|++
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999886 56899999999999999999999
Q ss_pred CceEEEEEeecC--cHHHHHHHHHhccCCCCcccc---------------C--CCc---------------cchHHHHHH
Q 000129 1717 NSGKCVILCHAP--RKEYYKKFLRLTQNPNYYNLQ---------------G--VSH---------------RHLSDHLSE 1762 (2114)
Q Consensus 1717 ~~G~~iil~~~~--~~~~~~~~lRl~~nP~~y~l~---------------~--~s~---------------~~l~~~lse 1762 (2114)
..|.|+++|.+. ..++|++++.-...|-.-.+. + .+. .+.++++++
T Consensus 386 ~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~ 465 (737)
T PRK02362 386 PYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLER 465 (737)
T ss_pred CCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHH
Confidence 999999999875 345677777211111111110 0 011 123457889
Q ss_pred HHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCC--ChhhHHHHHhcCccccCCCCCcchH
Q 000129 1763 LVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT--RMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1763 lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~--~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
+|++++..|.+.|||+.++ +.+.||++|+++|+|||+|.|+..|..+|+... +..++|++||.++||..+|+|++|+
T Consensus 466 ~v~~~l~~L~~~~~i~~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~ 544 (737)
T PRK02362 466 VVDDVLDFLERNGMIEEDG-ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDY 544 (737)
T ss_pred HHHHHHHHHHHCCCeeecC-CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHH
Confidence 9999999999999998753 469999999999999999999999999898765 6799999999999999999999999
Q ss_pred HHHHHHH--------hhCCcccCCCCCCC--hHHHHHHHHHHHhcCCCCCC-----Cc-hhhHHHHHHHHHHHHHHHHHH
Q 000129 1841 EVVRRLI--------HHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGG-----NL-KLDQEEVLLSASRLLQAMVDV 1904 (2114)
Q Consensus 1841 ~~l~~L~--------~~~p~~~~~~~~~~--~~~K~~lLLqahlsr~~lp~-----~l-~~D~~~il~~a~rLl~a~vdi 1904 (2114)
..+.++. .++|.++....+.. |++|+++|||+||+|.+++. .+ .+|++.+++++.||++|++++
T Consensus 545 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i 624 (737)
T PRK02362 545 EWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERL 624 (737)
T ss_pred HHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998875 45676554433443 78999999999999999762 12 789999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHH
Q 000129 1905 ISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 1984 (2114)
Q Consensus 1905 ~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~ 1984 (2114)
|+. +|+..+..+|+|+|||.||+|++++||+|||||++.++++|++.| |+|++||+++++++...+ ++++..+.
T Consensus 625 ~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~g---i~s~~dl~~~~~~~l~~~--~g~~~~~~ 698 (737)
T PRK02362 625 ASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAG---IESRADLRAADKSVVLAI--LGEKIAEN 698 (737)
T ss_pred HHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHH--HCHHHHHH
Confidence 776 556778999999999999999999999999999999999999999 999999999999999888 88888889
Q ss_pred HHHHHhcC
Q 000129 1985 IARFCNRF 1992 (2114)
Q Consensus 1985 i~~~~~~~ 1992 (2114)
|.+.+..+
T Consensus 699 i~~~~~~~ 706 (737)
T PRK02362 699 ILEQAGRR 706 (737)
T ss_pred HHHHhCcc
Confidence 99988754
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=815.95 Aligned_cols=643 Identities=24% Similarity=0.348 Sum_probs=529.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+.+.+.+ .+|+ |+++|.++++.+ .+++|++++||||||||++|++++++.+..+ .++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEEEEech
Confidence 677777777 4565 999999999986 5567899999999999999999999887643 379999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|+++.|++ +...|++|...+|+..........++|+|+|||+|+.+.+++. .+++++++|||||+|++.+ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4467999999999987666666788999999999999988764 5688999999999999987 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCc--hhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (2114)
||+.++.+++++.. ..++.|+|+||||++|..++++|++... +...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~~------~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNASL------IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCCc------cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999998887632 3568999999999999999999997642 567789999876543211100 00000
Q ss_pred HHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccC
Q 000129 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (2114)
.. .+...+.+. ..++++||||+||+.|+.+|..|.......... . .........+..|+++++.
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 012222232 347899999999999999999998754322111 0 0011123345678899999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.++..|+.. ...++|..+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999988888753 246789999999999999999
Q ss_pred CCCceEEEEEcCCCc-HHHHHHhh-cCCCcccchhhHh--hHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCccc
Q 000129 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (2114)
Q Consensus 876 ~d~~G~~iil~~~~e-~~~~~~ll-~~~~pies~l~~~--l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y 951 (2114)
+|..|.+++++...+ .+++.+++ +.+.|+||++... +..+++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987654 67788877 7899999999865 44455699999999999999999999999973 21
Q ss_pred CCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHH
Q 000129 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (2114)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~ 1031 (2114)
.+++.++|++|++.|.++|||+.+ +.+.+|++|+++|+||++|.|+..|.+.++..++...+|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124567899999999999999743 5689999999999999999999999999999999999999
Q ss_pred HhhCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccCC----CCccc-chHHHHHHhHHHH
Q 000129 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLE----GLSLT-SDMVFITQSAGRL 1106 (2114)
Q Consensus 1032 i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~----~~~l~-~d~~~i~~~a~rl 1106 (2114)
++|.++|| +++|..|...+.++.+++|.. ....++.|+++|||+||||.+++ .|... +|+..++++++|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGVI---DGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 888988888888888877641 23468899999999999999973 45555 7999999999999
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCc-h
Q 000129 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-K 1184 (2114)
Q Consensus 1107 ~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 1184 (2114)
.+|+..+|.. +|..++..+-.|.++|.+++|++++||.|+|||+++++++|.++|+ ++.++.+++++++.+++++. +
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 9999999976 4566777777888889999999999999999999999999999998 68888888999999998753 4
Q ss_pred hHHHHHHHHhc
Q 000129 1185 MGRTLHKFVHQ 1195 (2114)
Q Consensus 1185 ~~~~i~~~~~~ 1195 (2114)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 55666555443
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-78 Score=818.17 Aligned_cols=618 Identities=26% Similarity=0.393 Sum_probs=499.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|+++|+..+.+++|++++||||||||++|++|+++++.. .++ ++|||+|+++||.|++++|+ .|..
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~--~~l~l~P~~aLa~q~~~~~~-~~~~- 93 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGG--KAVYLVPLKALAEEKYREFK-DWEK- 93 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCC--eEEEEeChHHHHHHHHHHHH-HHhh-
Confidence 79999999999999877778899999999999999999999998875 244 99999999999999999998 4654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
.|++|..++|+...+.+.+.+++|+|+|||+|+.++++ ...+++++++||+||+|++++ .+|+.++.+++++
T Consensus 94 ~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l----- 166 (720)
T PRK00254 94 LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM----- 166 (720)
T ss_pred cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhc-----
Confidence 48999999999887766677889999999999999985 334689999999999999987 5799999888765
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEE--ecccccchHHHHHhcCHHHHHHHHHHhcCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI--QGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 1574 (2114)
....|+|++|||++|++++++|++... +.+.+||+++...+ .++........ ..........+...+..+
T Consensus 167 --~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 238 (720)
T PRK00254 167 --LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKI-ERFPNSWESLVYDAVKKG 238 (720)
T ss_pred --CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcch-hcchHHHHHHHHHHHHhC
Confidence 346899999999999999999998763 56778999985432 22221111000 000011122233334567
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC-cccchhhHhh----hhHHHHHHHhccceEeecCCCCHHHHH
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP-AEEVEPFIDN----IQEEMLKATLRHGVGYLHEGLNKTDQE 1649 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~-~~~l~~~~~~----i~d~~L~~~l~~gV~~~H~~ls~~dR~ 1649 (2114)
+++||||+||+.|+.+|..|...+.. ++... ...+..+.+. ..+..|.+++..||++|||||++++|.
T Consensus 239 ~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 239 KGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 89999999999999999998765431 11111 1222233322 345678888999999999999999999
Q ss_pred HHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1650 ~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.++++|++|.++|||||++++||||+|++.+||+++++|++ ..+.++++.+|+||+|||||+|+|..|.|++++.+.+
T Consensus 312 ~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 312 LIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999999999999999973 3456789999999999999999999999999998765
Q ss_pred -HHHHHHHHH-----hccCCCC-ccc----------cC-CCccchH---------------HHHHHHHHHHHHHHHHCCC
Q 000129 1730 -KEYYKKFLR-----LTQNPNY-YNL----------QG-VSHRHLS---------------DHLSELVENTISDLEASKC 1776 (2114)
Q Consensus 1730 -~~~~~~~lR-----l~~nP~~-y~l----------~~-~s~~~l~---------------~~lselve~~l~~L~~~~~ 1776 (2114)
+++|++|+. +...++. ..+ .. .+.+.+. ..+.+++++++..|.+++|
T Consensus 390 ~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~ 469 (720)
T PRK00254 390 PSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEF 469 (720)
T ss_pred hHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCC
Confidence 566777752 1111100 000 00 0111111 1245689999999999999
Q ss_pred ceecCCCccccCcccchhhhcccCHhHHHHHHhhcCC---CCChhhHHHHHhcCccccCCCCCcchHHHHHHH-------
Q 000129 1777 IIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP---KTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL------- 1846 (2114)
Q Consensus 1777 I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~---~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L------- 1846 (2114)
|+.++++.+.||++|+++|+|||+|.|+..|.++++. +++..++|++||.|+||..+|+|++|+..+.++
T Consensus 470 i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~ 549 (720)
T PRK00254 470 IDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDR 549 (720)
T ss_pred eEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhccc
Confidence 9998777899999999999999999999999988876 678999999999999999999999999888843
Q ss_pred -HhhCCcccCCCCCCC--hHHHHHHHHHHHhcCCCCCCCc------hhhHHHHHHHHHHHHHHHHHHHHhc----CCHHH
Q 000129 1847 -IHHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGGNL------KLDQEEVLLSASRLLQAMVDVISSN----GWLSL 1913 (2114)
Q Consensus 1847 -~~~~p~~~~~~~~~~--~~~K~~lLLqahlsr~~lp~~l------~~D~~~il~~a~rLl~a~vdi~~~~----g~l~~ 1913 (2114)
..++|++.+. .+.+ |++|+++|||+||+|.+++.++ ++|++.+++++.||++||+|+++.. +|++
T Consensus 550 l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~- 627 (720)
T PRK00254 550 LYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLD- 627 (720)
T ss_pred ccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHH-
Confidence 3444543321 2333 7899999999999999998766 8999999999999999999999944 4554
Q ss_pred HHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1914 ALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1914 al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
++. +|+|||+||+|+++++|.||||||+.++++|.++| ++|++|++++++++..++.+++++..+.|.++++.+
T Consensus 628 ~l~--~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g---~~s~~~i~~a~~~el~~~~gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 628 YLE--TLHLRVKHGVREELLELMRLPMIGRKRARALYNAG---FRSIEDIVNAKPSELLKVEGIGAKIVEGIFKHLGVE 701 (720)
T ss_pred HHH--HHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHcc---CCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 444 89999999999999999999999999999999999 999999999999999999899999999999998844
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-75 Score=780.04 Aligned_cols=602 Identities=25% Similarity=0.358 Sum_probs=484.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
+|. ++|+|.++++.+.+ ++|++++||||||||++|++++++.+.. ++ ++||++|+++||.|++++|++ +..
T Consensus 20 ~~~-l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q~~~~~~~-l~~- 90 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAMEKYEELSR-LRS- 90 (674)
T ss_pred CCC-CCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHHHHHHHHH-Hhh-
Confidence 465 99999999999854 6789999999999999999999998875 44 899999999999999999984 654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
.|.+|...+|+...+...+..++|+|+|||+|+.++++|. ..++++++||+||+|++++ .+|+.++.++++++++
T Consensus 91 ~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~-- 166 (674)
T PRK01172 91 LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV-- 166 (674)
T ss_pred cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc--
Confidence 4889999999987766667788999999999999998854 4589999999999999986 5799999999988876
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 1576 (2114)
+.+.|+|++|||++|+.++++|++... +.+.+||+|+...+........... ..........+......+++
T Consensus 167 --~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 238 (674)
T PRK01172 167 --NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDINSLIKETVNDGGQ 238 (674)
T ss_pred --CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHHHHHHHHHhCCCc
Confidence 457999999999999999999998764 6678899999876643321111000 00011123334444467889
Q ss_pred EEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 000129 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656 (2114)
Q Consensus 1577 ~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~ 1656 (2114)
+||||+|+++|+.+|..|...+..... +.. ... .....+..+.+++.+||++|||||++++|..+++.|+
T Consensus 239 vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~-~~~-----~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 239 VLVFVSSRKNAEDYAEMLIQHFPEFND----FKV-SSE-----NNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccc----ccc-ccc-----ccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999999776542211 100 000 1223456788889999999999999999999999999
Q ss_pred cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc-HHHHHH
Q 000129 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKK 1735 (2114)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~-~~~~~~ 1735 (2114)
+|.++|||||++++||+|+|+..|||+++++|++.. ..++|+.+|.||+|||||+|++..|.+++++.+.+ .+++++
T Consensus 309 ~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~--~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~ 386 (674)
T PRK01172 309 NRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGG--IRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK 386 (674)
T ss_pred cCCCeEEEecchhhccCCCcceEEEEcCceEeCCCC--ceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH
Confidence 999999999999999999999999999999998763 35789999999999999999999999999988765 577888
Q ss_pred HHHhccCCCCcccc---------------C--CCccch--------------HHHHHHHHHHHHHHHHHCCCceecCCCc
Q 000129 1736 FLRLTQNPNYYNLQ---------------G--VSHRHL--------------SDHLSELVENTISDLEASKCIIIEEDMD 1784 (2114)
Q Consensus 1736 ~lRl~~nP~~y~l~---------------~--~s~~~l--------------~~~lselve~~l~~L~~~~~I~~~~~~~ 1784 (2114)
++.-...|-.-.+. + .+.+++ ++++++.|+++++.|.+.|||+. ++.
T Consensus 387 ~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~--~~~ 464 (674)
T PRK01172 387 YLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKG--DVT 464 (674)
T ss_pred HHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCccc--CCc
Confidence 87322111000000 0 011111 34678899999999999999963 346
Q ss_pred cccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHH
Q 000129 1785 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864 (2114)
Q Consensus 1785 ~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~ 1864 (2114)
+.||++|+++|+||++|.|+..|..+++..++..++|++||.|+|| +|+|++|+..+.++..++|.. ....|++
T Consensus 465 ~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 538 (674)
T PRK01172 465 LRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYAMEFLEDIGVI----DGDISAA 538 (674)
T ss_pred EeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHHHHHHHHhccc----cchhHHH
Confidence 9999999999999999999999999999999999999999999999 999999999998888887651 3445899
Q ss_pred HHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH------HHHHHH-------HHhccCCC
Q 000129 1865 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLA------MEVSQM-------VTQGMWER 1931 (2114)
Q Consensus 1865 K~~lLLqahlsr~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~------m~L~q~-------i~Qg~w~~ 1931 (2114)
|+++|||||++|.+++. +..++..++.+++++ +++.+|+.+++.+ |+++|| |+||+|++
T Consensus 539 k~~~ll~~~~~~~~~~~-----i~~~~~~~~g~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~rl~~gv~~~ 610 (674)
T PRK01172 539 KTAMVLRGWISEASMQK-----ITDTYGIAPGDVQAR---ASSADWISYSLARLSSIYKPEMRRKLEILNIRIKEGIRED 610 (674)
T ss_pred HHHHHHHHHHcCCCHHH-----HHHHhCCChHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999873 333444444444444 2334444444443 666666 99999999
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1932 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1932 ~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
++||+|||||++.++++|+++| ++|++||++++++++.+++++++++++.|.+.++.
T Consensus 611 ~~~L~~ip~~~~~~a~~l~~~g---~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 611 LIDLVLIPKVGRVRARRLYDAG---FKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMK 667 (674)
T ss_pred HHhhcCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999888765
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=657.77 Aligned_cols=635 Identities=27% Similarity=0.360 Sum_probs=491.3
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+.+..++. ++.++++.|+.++...+.+++|+|||+|||||||++++++|++.+.+. ++ ++|||||+++||.|++
T Consensus 18 ~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~--k~vYivPlkALa~Ek~ 93 (766)
T COG1204 18 DRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GG--KVVYIVPLKALAEEKY 93 (766)
T ss_pred HHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CC--cEEEEeChHHHHHHHH
Confidence 34555655 465666666666666655599999999999999999999999999883 34 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHH
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEV 1486 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~ 1486 (2114)
++|+ +|... |++|+..|||...+...+..++|||+|||+|++++|++.. ++..|++|||||+|++++. ||+++|.
T Consensus 94 ~~~~-~~~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFS-RLEEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhh-hHHhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehh
Confidence 9999 77664 9999999999998888899999999999999999998544 8899999999999999997 9999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCC-ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1565 (2114)
++++++.. ...+|+|++|||+||+.++|+|+++... ..+.+.+..|+++....+........ ..........+.
T Consensus 170 iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~ 244 (766)
T COG1204 170 IVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALE 244 (766)
T ss_pred HHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHH
Confidence 99999977 3458999999999999999999999864 46677778888888777766553332 112223345566
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc-cccCCCcccch-hhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS-AFLLWPAEEVE-PFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~-~~l~~~~~~l~-~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
.+..++..++++||||+||+.+..+|..+............ .........+. .......+..|.+++..|+++||+||
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 77777789999999999999999999999864433221111 00011111111 12233445789999999999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
+.++|..+++.|+.|.++|||||++++||||+|+.+|||+||.+|++..+ ..++++.+++||+|||||||+|..|.+++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g-~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCC-eEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 99999999999999999999999999999999999999999999997433 78999999999999999999999999999
Q ss_pred EeecCcHHHHHHHH-------------------------------------------HhccCCCCccccCCCccchHHHH
Q 000129 1724 LCHAPRKEYYKKFL-------------------------------------------RLTQNPNYYNLQGVSHRHLSDHL 1760 (2114)
Q Consensus 1724 l~~~~~~~~~~~~l-------------------------------------------Rl~~nP~~y~l~~~s~~~l~~~l 1760 (2114)
++++.+...+..-. |++.+|.+|+. ..+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~---------~~~ 474 (766)
T COG1204 404 LATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE---------GML 474 (766)
T ss_pred EecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccc---------cch
Confidence 99655543332211 33444443332 235
Q ss_pred HHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCC---ChhhHHHHHhcCccccCCCCCc
Q 000129 1761 SELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT---RMKGLLEVLASASEYAQLPIRP 1837 (2114)
Q Consensus 1761 selve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~---~~~~iL~ils~a~Ef~~i~vR~ 1837 (2114)
...+..++..|.+.+.+...+...+.+|.+|..+|.|||++.|++.|...+.... +..++++.++.++||..+++|.
T Consensus 475 ~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~ 554 (766)
T COG1204 475 REEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRE 554 (766)
T ss_pred HHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhh
Confidence 5678889999999874434445679999999999999999999999988766655 6889999999999999999998
Q ss_pred chHHHH--HHHHhhCCcccCCC------CCC--ChHHHHHHHHHHHhcCCCCC------CCchhhHHHHHHHHHHH----
Q 000129 1838 GEEEVV--RRLIHHQRFSFENP------KFT--DPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASRL---- 1897 (2114)
Q Consensus 1838 ~E~~~l--~~L~~~~p~~~~~~------~~~--~~~~K~~lLLqahlsr~~lp------~~l~~D~~~il~~a~rL---- 1897 (2114)
.+...+ ..+....++..... .+. -...|+...+-+|++..+.. .....|+..+...+.|+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~ 634 (766)
T COG1204 555 RESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADL 634 (766)
T ss_pred hhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhh
Confidence 887664 33444444432211 111 12567888888898876653 23478999999999999
Q ss_pred ---HHHHHHHHHhcCCHHHH-HHHHHHHHHHHhccC-CCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHh-cCCHHHH
Q 000129 1898 ---LQAMVDVISSNGWLSLA-LLAMEVSQMVTQGMW-ERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLV-EMEDDER 1971 (2114)
Q Consensus 1898 ---l~a~vdi~~~~g~l~~a-l~~m~L~q~i~Qg~w-~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~-~~~~~~r 1971 (2114)
..++-..+...+...-- ...-.+..++..|+- ++..+|..++|+++.++++++++| .+++.++. ...+.+.
T Consensus 635 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g---~~~~~~~~~~~~~~~~ 711 (766)
T COG1204 635 LALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAG---YKSLEDLRLIADPAEL 711 (766)
T ss_pred hhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhh---hccHHHHHhhcChhhh
Confidence 77777777666532210 233478889999999 788999999999999999999999 99999998 4444443
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 000129 1972 RELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1972 ~~ll~~~~~~~~~i~~~~~ 1990 (2114)
..+-+........|...+.
T Consensus 712 ~~~~~~~~~~~~~i~~~~~ 730 (766)
T COG1204 712 LPLTGIGERLVEAILESLG 730 (766)
T ss_pred hhhhhhHHHHHHHHHHHhh
Confidence 3333345555555554444
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-50 Score=471.71 Aligned_cols=553 Identities=24% Similarity=0.343 Sum_probs=417.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
++|+.++..| .|++.|.|+|..++...+-.++|++|+++|+||||+++.++-+..+... +.|.+|++|
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~KmlfLvP 269 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKKMLFLVP 269 (830)
T ss_pred CCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCeEEEEeh
Confidence 4599999998 7999999999999999988889999999999999999999988887653 238999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEec
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
..|||+|.++.|+++..++|+++..-.|-....... ...++|||+|.|-+|.+.|.. ..+.+++.|||||
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDE 346 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDE 346 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeee
Confidence 999999999999999999999999988865544332 347899999999999999976 4688999999999
Q ss_pred cccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC
Q 000129 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK 710 (2114)
Q Consensus 632 aH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~ 710 (2114)
+|.|.| +||+.+.-++.|+.+ ..+..|+|+||||+.|+++++..|+..+. ....||||+..|.+.....
T Consensus 347 iHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~lV------~y~~RPVplErHlvf~~~e 416 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKLV------LYDERPVPLERHLVFARNE 416 (830)
T ss_pred eeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCeeE------eecCCCCChhHeeeeecCc
Confidence 999998 899999999999854 45689999999999999999999997642 2356899999988754432
Q ss_pred chhHHHHHhhHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcc
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (2114)
..+...++.++-........ .+|+|||++||+.|..+|..|..++...
T Consensus 417 --~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a--------------------------- 467 (830)
T COG1202 417 --SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA--------------------------- 467 (830)
T ss_pred --hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccc---------------------------
Confidence 22333334443332222222 6799999999999999999998776543
Q ss_pred hhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHh
Q 000129 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2114)
Q Consensus 788 ~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2114)
+.+||||+..+|+.++..|.++.+.++|+|++|+.|||+|+-.||+..- . -+..|+|+.+|.||
T Consensus 468 ----------~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL-----a-MG~~WLs~~EF~QM 531 (830)
T COG1202 468 ----------APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL-----A-MGIEWLSVREFQQM 531 (830)
T ss_pred ----------ccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----H-cccccCCHHHHHHH
Confidence 4569999999999999999999999999999999999999998877421 1 12478999999999
Q ss_pred hcccCCCCCCCceEEEEEcCCCc----------HHHHHHhhc-CCCcccchhhH-hhHHHHHHHHhhccccChHHHHHHH
Q 000129 868 LGRAGRPQYDSYGEGIIITGHSE----------LRYYLSLMN-QQLPIESQFVS-KLADQLNAEIVLGTVQNAKEACNWI 935 (2114)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~e----------~~~~~~ll~-~~~pies~l~~-~l~d~l~~ei~~~~i~~~~~~~~wl 935 (2114)
.||||||+|...|++|++..+.. .+.-.++++ .+.|+.-...+ .-.+++.| ..|...+..+ ++-
T Consensus 532 ~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~-i~~- 607 (830)
T COG1202 532 LGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV-IER- 607 (830)
T ss_pred hcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH-Hhh-
Confidence 99999999999999999987543 222233443 44565554433 22233333 2232233222 111
Q ss_pred HhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHH
Q 000129 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (2114)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~ 1015 (2114)
-|+...|-..+ ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.|.++..
T Consensus 608 ----------v~~~~~g~~~~---------------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~ 660 (830)
T COG1202 608 ----------VNSLMLGAAFD---------------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEF 660 (830)
T ss_pred ----------cChhhccccCC---------------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHH
Confidence 12222222111 24678899999999855 3569999999999999999999998
Q ss_pred HHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhc-cCCCCCCC-----------CCC--Ch--hHHHHHHHH
Q 000129 1016 YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE-----------SLE--EP--SAKINVLLQ 1079 (2114)
Q Consensus 1016 ~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~-~~~~~~~~-----------~~~--~~--~~K~~~llq 1079 (2114)
+...+-..+ +.|++++.-.=|++..+...=+.++.+.+. ++|..+-. .+- +| ..|...+.|
T Consensus 661 Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~ 737 (830)
T COG1202 661 IREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYM 737 (830)
T ss_pred HHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Confidence 888753333 567788888888888888777777766543 33332111 010 22 345666667
Q ss_pred HHHhc-------------------ccCC-------------CCccc---chHHHHHHhHHHHHHHHHHHHHHcCcHHHHH
Q 000129 1080 AYISQ-------------------LKLE-------------GLSLT---SDMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124 (2114)
Q Consensus 1080 ~~i~~-------------------~~~~-------------~~~l~---~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~ 1124 (2114)
.+++. ++++ .|.+. +|..+-++++.|++.|.-.||...+-...+.
T Consensus 738 df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ 817 (830)
T COG1202 738 DFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEA 817 (830)
T ss_pred HHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 77663 1222 24443 8999999999999999999998777667777
Q ss_pred HHHHHHHHHHc
Q 000129 1125 KALNLSKMVTK 1135 (2114)
Q Consensus 1125 ~~~~l~~~~~~ 1135 (2114)
.+..|.+-|+.
T Consensus 818 ea~~lk~~ie~ 828 (830)
T COG1202 818 EAKALKKKIEE 828 (830)
T ss_pred HHHHHHHHhhc
Confidence 77777777654
|
|
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=497.30 Aligned_cols=307 Identities=45% Similarity=0.753 Sum_probs=288.5
Q ss_pred cccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHH
Q 000129 1785 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1864 (2114)
Q Consensus 1785 ~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~ 1864 (2114)
+.||++|+|||+|||++.|++.|...+++.++..++|++||.|.||.++|+|++|+..+.+|++.+|++.+...+.+|+.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876556788999
Q ss_pred HHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCH
Q 000129 1865 KANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK 1943 (2114)
Q Consensus 1865 K~~lLLqahlsr~~lp-~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~ 1943 (2114)
|+++||||||+|+++| .+|.+|+.+|+++|+||++||+||+...||+.+++++|+|+|||+||+|++++||+|||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 9999999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEcC
Q 000129 1944 DLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDL 2023 (2114)
Q Consensus 1944 ~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~ 2023 (2114)
+.+++|.++| +.++.||.+++++++..+++++++++++|+++|++||+++|++++.+...+..+..++++++++++.
T Consensus 162 ~~~~~l~~~~---i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~ 238 (312)
T smart00611 162 EILKRLEKKK---VLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDD 238 (312)
T ss_pred HHHHHHHhCC---CCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEcc
Confidence 9999999999 9999999999999999999999999999999999999999999998766677889999999999842
Q ss_pred CCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccccc---EEEEEEEecCCCCceEEEEEEEecCccccCe
Q 000129 2024 EGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS---RVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQ 2100 (2114)
Q Consensus 2024 ~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~---~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~ 2100 (2114)
.+| .|.|+||++|||.++|+|++++|+++.+.. +++++|.+|..+|.|+|++++|||||+|||+
T Consensus 239 -------~~~------~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~ 305 (312)
T smart00611 239 -------EIH------GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQ 305 (312)
T ss_pred -------ccc------CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcce
Confidence 122 689999999999999999999999997544 7899999998789999999999999999999
Q ss_pred EEEEEEE
Q 000129 2101 EYAFTVD 2107 (2114)
Q Consensus 2101 ~~~~~~~ 2107 (2114)
+++|+++
T Consensus 306 ~~~i~~~ 312 (312)
T smart00611 306 EYPLSFD 312 (312)
T ss_pred EEEEeeC
Confidence 9999873
|
|
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=498.31 Aligned_cols=308 Identities=45% Similarity=0.765 Sum_probs=294.0
Q ss_pred cccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCC-CCCCChhH
Q 000129 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (2114)
Q Consensus 994 ~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~-~~~~~~~~ 1072 (2114)
+.+|++|++||+|||++.||+.|++.+++.++..++|.++|.|.||.++++|++|+.+|.+|...+|++.+ ...+.++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876 45788999
Q ss_pred HHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCH
Q 000129 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (2114)
Q Consensus 1073 K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~ 1152 (2114)
|+++||||||+|++++.++|.+|+.+|+++|.||++||+||+..+||+..+.++++|+|||+||+|++++||+||||+++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-chhhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCceeEEEEEeeccCceEEEEEEEccCCccCCCCC
Q 000129 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (2114)
Q Consensus 1153 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~~~~~~~l~~~l~i~~~f~~~~~~~ 1230 (2114)
+.+++|+++|+ +++++.++++++++.+++++ +.++.|+++++.||++++++.++|+++..+++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999885 89999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCccccccccc
Q 000129 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (2114)
Q Consensus 1231 ~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~~ 1302 (2114)
+..+.||+||+|+++++|+|+++|.+++....+++.++|.+|..++. ++|+++++||+|+||+...+++|+
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999999999887665678999999976665 999999999999999999998864
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=484.01 Aligned_cols=307 Identities=38% Similarity=0.667 Sum_probs=238.9
Q ss_pred cCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHH
Q 000129 1787 PSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKA 1866 (2114)
Q Consensus 1787 ~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~ 1866 (2114)
||++|+|||+|||++.||+.|...+++.++..++|++||.|.||+++|+|++|+..|.+|++.+|++++...+.+|+.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999887556788999999
Q ss_pred HHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000129 1867 NALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDL 1945 (2114)
Q Consensus 1867 ~lLLqahlsr~~lp-~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~ 1945 (2114)
++||||||+|+++| .+|..|+..|+++++||++||+|++...||+.++.++|+|+|||+||+|+.++||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccc-cccCCCcEEEEEEEEEcCC
Q 000129 1946 AKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSE-NVRAGEDITLQVVLERDLE 2024 (2114)
Q Consensus 1946 ~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~-~v~~g~~~~l~v~l~r~~~ 2024 (2114)
+++|.++| |.++.+|+++++++++.+++.+++++.+|.++++++|.++|++++.... .+. ..++++|++++.+
T Consensus 161 ~~~l~~~~---i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~--~~~~v~v~i~~~~- 234 (314)
T PF02889_consen 161 LKKLEKRG---IKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIV--PILTVQVSITRKF- 234 (314)
T ss_dssp HHHHHHTT-----SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEEC--SEEEEEEEEEESS-
T ss_pred HHHHhccC---CCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccC--CcEEEEEEEEccc-
Confidence 99999999 9999999999999999999999999999999999999999988886431 111 5689999999954
Q ss_pred CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeec-cc--ccEEEEEEEecCCCCc--eEEEEEEEecCccccC
Q 000129 2025 GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSL-QR--KSRVKLDFAAPAEAGK--KTYTLYFMCDSYMGCD 2099 (2114)
Q Consensus 2025 ~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~-~~--~~~~~l~f~~p~~~G~--~~~~l~~~sDsY~G~D 2099 (2114)
...++||+.|.|+||++|||.++|+|+.++|+++ .+ .....++|++|..+|. ++|+++++||+|+|+|
T Consensus 235 -------~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d 307 (314)
T PF02889_consen 235 -------SWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLD 307 (314)
T ss_dssp -------S-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--
T ss_pred -------ccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccc
Confidence 2334999999999999999999999999999999 44 6789999999966577 9999999999999999
Q ss_pred eEEEEEE
Q 000129 2100 QEYAFTV 2106 (2114)
Q Consensus 2100 ~~~~~~~ 2106 (2114)
++++|+|
T Consensus 308 ~~~~i~~ 314 (314)
T PF02889_consen 308 QEVPINF 314 (314)
T ss_dssp EEEEEEE
T ss_pred eEEEeeC
Confidence 9999986
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=433.19 Aligned_cols=528 Identities=21% Similarity=0.283 Sum_probs=381.2
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+.|+.++. |++.+.|+|+-++.+-+-.++|.+|.++|+||||++.++|=+..+.. .++ |.+|++|..+||+|.+
T Consensus 203 e~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~--KmlfLvPLVALANQKy 278 (830)
T COG1202 203 EKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGK--KMLFLVPLVALANQKY 278 (830)
T ss_pred HHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCC--eEEEEehhHHhhcchH
Confidence 45677765 79999999999999976667889999999999999999999888776 244 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcccc-------hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-C
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q 1479 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~ 1479 (2114)
.+|++++++. |+++..-.|-.... ...-..+||||+|.|-+|.++|.. ..+.+++.|||||+|+|.+ +
T Consensus 279 ~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deE 354 (830)
T COG1202 279 EDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEE 354 (830)
T ss_pred HHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchh
Confidence 9999999764 88887777643322 223346799999999999999973 6789999999999999988 7
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEeccccc-chHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~~~~~~~ 1558 (2114)
+|+.+.-++.|++++. +..|+|++|||+.|+.++|..+|+.. ..-+.||||++-|+.-.... ........
T Consensus 355 RG~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 355 RGPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred cccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 9999999999999984 47999999999999999999999875 22356999999887643311 11122222
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
+.+..+...... .-.+|+|||++||+.|..+|..|.. -+..+.+
T Consensus 426 L~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~~-----------------------------------kG~~a~p 469 (830)
T COG1202 426 LVKREFSTESSK-GYRGQTIVFTYSRRRCHELADALTG-----------------------------------KGLKAAP 469 (830)
T ss_pred HHHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhhc-----------------------------------CCccccc
Confidence 222223222222 3468999999999999999976621 1345789
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE----EeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
||+||+..+|+.++..|.++.+.++|+|..++.|||+|+..||+ ||. .+.++.+|.||.||||||+
T Consensus 470 YHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~----------~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 470 YHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----------EWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred ccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHccc----------ccCCHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999887 443 3678999999999999999
Q ss_pred CCCceEEEEEeecCcHHHH-------HHHHHhccC-CCCcccc--------------CC--CccchHHH----HH--HHH
Q 000129 1715 LDNSGKCVILCHAPRKEYY-------KKFLRLTQN-PNYYNLQ--------------GV--SHRHLSDH----LS--ELV 1764 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~~~~~-------~~~lRl~~n-P~~y~l~--------------~~--s~~~l~~~----ls--elv 1764 (2114)
++..|++|+++.+.++..- +-.++++.. |.-..+. ++ +...+.+. +. --.
T Consensus 540 yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g~~~~~ 619 (830)
T COG1202 540 YHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLGAAFDP 619 (830)
T ss_pred cccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhccccCCH
Confidence 9999999999987643211 011122222 2111000 00 00000000 00 124
Q ss_pred HHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHH
Q 000129 1765 ENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVR 1844 (2114)
Q Consensus 1765 e~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~ 1844 (2114)
++++..|++.|+|..+. +.+.||+.|+++|.+.+.|.++..+...+-..+ +.+.+++.-.=|++..+...=...+.
T Consensus 620 ~k~l~~Lee~g~i~~~G-~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~ 695 (830)
T COG1202 620 KKALSKLEEYGMIKKKG-NIVRPTPYGRAVAMSFLGPSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIE 695 (830)
T ss_pred HHHHHHHHhcCCeeccC-CEeeeccccceeEEeecCchHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHH
Confidence 67899999999997653 359999999999999999999999998754443 34556666666766655543333333
Q ss_pred HH-HhhCCcccCC----------CCC--CChH--HHHHHHHHHHhcC---------------------C------CCC--
Q 000129 1845 RL-IHHQRFSFEN----------PKF--TDPH--VKANALLQAHFSR---------------------Q------QVG-- 1880 (2114)
Q Consensus 1845 ~L-~~~~p~~~~~----------~~~--~~~~--~K~~lLLqahlsr---------------------~------~lp-- 1880 (2114)
.. .-++|..+.. .++ -+|. .|.+++.++.++- + .++
T Consensus 696 ~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~ 775 (830)
T COG1202 696 SALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRI 775 (830)
T ss_pred HHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 2233332211 011 1232 4455555555551 0 011
Q ss_pred -------CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000129 1881 -------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1924 (2114)
Q Consensus 1881 -------~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i 1924 (2114)
..|++|....|+++.|++.|.-.|+...+--..+..|+.|..-+
T Consensus 776 l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~i 826 (830)
T COG1202 776 LEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKI 826 (830)
T ss_pred HHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 13589999999999999999999997665333333455554443
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=467.89 Aligned_cols=305 Identities=39% Similarity=0.662 Sum_probs=243.4
Q ss_pred cChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCC-CCCCCChhHHH
Q 000129 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (2114)
Q Consensus 996 ~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~-~~~~~~~~~K~ 1074 (2114)
||++|+|||+|||++.||..|.+.+++.++..++|.++|.|.||.++++|++|+.+|.+|..++|+|+ ++.+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 77799999999
Q ss_pred HHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHH
Q 000129 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (2114)
Q Consensus 1075 ~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~ 1154 (2114)
++||||||+|+++++++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||.||+|++.+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-CchhhhccCChHHhhhhhc-CchhHHHHHHHHhcCCceeEEEEEeeccCce---EEEEEEEccCCccCCCC
Q 000129 1155 LMKLEKKD-FAWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (2114)
Q Consensus 1155 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~~---l~~~l~i~~~f~~~~~~ 1229 (2114)
+++|+++| .+++++.+++++++..+++ .+..|+.|.+++++||+++++++++|++.+. ++|+|++++.|.|+..+
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 99999999 4899999999999999997 7899999999999999999999999999888 99999999999999999
Q ss_pred CCc-cccEEEEEEeCCCCeEEEEEeeee-eecccccccEEEEEeccC-CCCCCeEEEEEeccccccCcccccccc
Q 000129 1230 HGY-VEPFWVIVEDNDGEYILHHEYFML-KKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2114)
Q Consensus 1230 ~~~-~~~~wi~v~d~~~~~i~~~~~~~l-~~~~~~~~~~~~f~vp~~-~p~p~~y~v~~vSD~wl~~e~~~~is~ 1301 (2114)
|+. .+.||++|+|.+++.|+|++++.+ +++ ......++|++|.. .|.+++|.++++||+|+|++..++++|
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKK-SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS---EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhc-cCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 998 899999999999999999999999 332 35678899999986 666699999999999999999998875
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=416.79 Aligned_cols=336 Identities=22% Similarity=0.337 Sum_probs=278.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|++.|++||++++|.++.+.+ +|..|.||||||.+|.+||++.+...+ ..+.+++++|||+||.|+.+.|
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHHHHHHHHHHH
Confidence 5799999999999999998876 999999999999999999999998864 3479999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
..+....|++|..+.|+.+...+ ....++|+|+||+++ |.+..... ..+..++++|+||||.+.| +|++.++.
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99888999999999999887654 356899999999995 88875443 5688999999999999998 68888888
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEee-cCCcccc-cceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRPV-PLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f-~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+..+ +...|.+++|||+| ..+.+..+..+..+.-.. ...|+.+ .+.|+|..++.+.....+
T Consensus 228 ILk~i-------p~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL------- 291 (476)
T KOG0330|consen 228 ILKVI-------PRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL------- 291 (476)
T ss_pred HHHhc-------CccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH-------
Confidence 77665 57889999999999 567777777665554433 3344544 356666655544322211
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
-.+++...++++||||+|...+..++-.|+..++.+..+ ||.
T Consensus 292 -V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~L-------------------------------------hGq 333 (476)
T KOG0330|consen 292 -VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPL-------------------------------------HGQ 333 (476)
T ss_pred -HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecc-------------------------------------cch
Confidence 123334447899999999999999999999988766554 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|++..|.-.++.|++|...|||||++++||+|+|.+++||| ||.|. +..||+||+||+||+| .+|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHcccccccC--CCcceE
Confidence 99999999999999999999999999999999999999999 77665 6779999999999998 889999
Q ss_pred EEcCCCcHHHHHHh---hcCCCc
Q 000129 884 IITGHSELRYYLSL---MNQQLP 903 (2114)
Q Consensus 884 il~~~~e~~~~~~l---l~~~~p 903 (2114)
.++++-+.+.|.++ +...+|
T Consensus 402 tlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 402 TLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEehhhhHHHHHHHHHHhcCCC
Confidence 99999888877763 454444
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=455.83 Aligned_cols=658 Identities=24% Similarity=0.334 Sum_probs=444.2
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHHH--HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 000129 481 EMPEWAQPAF---KGMTQLNRVQSRVYK--SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (2114)
Q Consensus 481 ~lp~~~~~~f---~g~~~l~~iQ~~~i~--~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ 555 (2114)
-+|+.+.... +|+..+..+|.+|+. .++ +.+|+|..+||++|||+++.+-+++.+...+. +++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeE
Confidence 3455544443 788899999999984 444 77899999999999999999999998776532 6899
Q ss_pred EcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 556 iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+.|..+.+++....+..++.++|+.|.+++|..... ...+...+.|||.||-..+.........+..+++||+||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 999999999999999999999999999999765543 3345778999999997666555544456777999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEe-eccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-IQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-~~~~~~~ 713 (2114)
+| +||..+|.++++++...... .+|+||||||+||..+++.||.+. ++...|||||+...... ......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~--~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET--SVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc--ceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 79999999999997755433 489999999999999999999843 56778999999875532 111111
Q ss_pred HHHHHhhHHH---------------HHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccc-cCchhHHH
Q 000129 714 QRFQLMNDLC---------------YEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK-EDSVSREI 776 (2114)
Q Consensus 714 ~~~~~~~~~~---------------~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~-~~~~~~~~ 776 (2114)
.+...+.++. .....+... +.++||||++|+.|+.+|..+.........-..++. .+..+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 0222111111 111222233 557999999999999999777654322111100110 00000000
Q ss_pred HHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcc
Q 000129 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2114)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2114)
........-+..|+..+++|++|||+|++.++|+.|+..|+.|.+.|++||+|+++|||+|+.+|||.. ||-. -
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira--P~~g----~ 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA--PYVG----R 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC--Cccc----c
Confidence 111223345677999999999999999999999999999999999999999999999999999999972 2221 1
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCC-cccchhhHh----hHHHHHHHHhhccccChHHH
Q 000129 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVSK----LADQLNAEIVLGTVQNAKEA 931 (2114)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~-pies~l~~~----l~d~l~~ei~~~~i~~~~~~ 931 (2114)
..++..+|.||+|||||+|.|+.|.+|+++...+...+..+++.+. |+-|++... +...+..-|+.|...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 3468899999999999999999999999999999888888888776 566666431 11234455677777889999
Q ss_pred HHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHH-HHHhHCCCcc-cccCCCccccChhHHHHhhcccc
Q 000129 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA-TILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (2114)
Q Consensus 932 ~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al-~~L~~~~~i~-~~~~~~~~~~T~lG~i~s~~yi~ 1009 (2114)
..+...|+++.... |..-....+ .+.+.. .+..+. ..+-+..+|. -........+|+||+..-.-.++
T Consensus 659 ~~~va~tl~s~q~~--~~~~~~~le-~~s~ql-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEK--PENVREQLE-MESDQL-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccc--hhhhhhccc-chhhhh-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 99999998876532 111111111 000000 001111 1222222222 00111112388999987666666
Q ss_pred cccHHHHHhhcCCC----------------------CCHHHHHHHhhCCccCCCCcCChhHHHHHHHHh-------ccCC
Q 000129 1010 HGTISTYNEHLKPT----------------------MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL-------DRVP 1060 (2114)
Q Consensus 1010 ~~t~~~~~~~l~~~----------------------~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~-------~~~~ 1060 (2114)
+.-...+...++.. +...+.+..+++ |. .+.+.|+. +.++. .++-
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i---~~--~L~~~~~~-~~~~~G~~e~fi~~~~ 802 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQI---YH--TLPSPEQK-LAKLLGVIESFIEKCV 802 (1008)
T ss_pred hhhhHHHHHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHH---Hh--cCCcHHHH-HHhhhchHHHHHHHhh
Confidence 55443332222211 111122211111 00 11122222 11111 1110
Q ss_pred C-CCCCCCCCh----hHHHHHHHHHHHhcccC----CCCccc-chHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 000129 1061 I-PVKESLEEP----SAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLS 1130 (2114)
Q Consensus 1061 ~-~~~~~~~~~----~~K~~~llq~~i~~~~~----~~~~l~-~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~ 1130 (2114)
. .......+. ..=+...||.+++..++ ++|... +=+...+++|.+...++.-+|.+.+|.......-++-
T Consensus 803 ~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~ 882 (1008)
T KOG0950|consen 803 SGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFY 882 (1008)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 0 000001111 12267789999999887 456555 4556788999999999999999999984444444566
Q ss_pred HHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc
Q 000129 1131 KMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2114)
Q Consensus 1131 ~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2114)
+++..+.-.+..||..+|++...++++|+.+|+ ++.+|..-++.++..-+.
T Consensus 883 ~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 883 GRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 777777888899999999999999999999998 466666668887766553
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=474.60 Aligned_cols=414 Identities=23% Similarity=0.324 Sum_probs=293.5
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 480 ~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
+.|++.+++.| .+|..|||+|.++++.++.+ +|++++||||||||++|++|+++.+...... + ....++++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~-~~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGRE-G-ELEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhccc-c-CCCCCeEEEEEcC
Confidence 45677777777 57899999999999997665 5799999999999999999999988753211 1 0124578999999
Q ss_pred cHHHHHHHHHHHHHhh-----------ccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCccccc
Q 000129 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~-----------~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~ 623 (2114)
+|||+.|+++++...+ ... ++++...+||.+...+. ...++|+|||||++..+.+.......+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766422 122 78899999998765542 34789999999999776655433346789
Q ss_pred ccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc----cCceEeecCCc-cc
Q 000129 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL----EKGLFYFDNSY-RP 697 (2114)
Q Consensus 624 v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~----~~~~~~f~~~~-rp 697 (2114)
+++|||||+|.+.+ .||..++.++.++.... ....|+||+|||++|.++++.|+.... ...+......+ ++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999987 69999999998886543 357899999999999999999997531 11122222221 22
Q ss_pred ccceeEEEeeccCchhHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000129 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2114)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~ 776 (2114)
..+.... ..... .......+...++..+.+.. ..+++||||||++.|+.++..|+......
T Consensus 250 ~~i~v~~-p~~~l-~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~---------------- 311 (876)
T PRK13767 250 FDIKVIS-PVDDL-IHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE---------------- 311 (876)
T ss_pred ceEEEec-cCccc-cccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh----------------
Confidence 2111110 00000 00000111222333333333 26789999999999999999987632110
Q ss_pred HHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcc
Q 000129 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2114)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2114)
....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+++.
T Consensus 312 ---------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~--- 369 (876)
T PRK13767 312 ---------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK--- 369 (876)
T ss_pred ---------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC---
Confidence 12357999999999999999999999999999999999999999999999998 66654
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEcCC-CcHHH---HHH-hhcC-CCcc--cchhhHhhHHHHHHHHhhccccCh
Q 000129 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRY---YLS-LMNQ-QLPI--ESQFVSKLADQLNAEIVLGTVQNA 928 (2114)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~e~~~---~~~-ll~~-~~pi--es~l~~~l~d~l~~ei~~~~i~~~ 928 (2114)
|+.+|+||+|||||.+ +..+.+++++.. .+.-. +.+ .... ..|+ ...-...|..|+.+.+..+ .-+.
T Consensus 370 ---sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~ 444 (876)
T PRK13767 370 ---SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDI 444 (876)
T ss_pred ---CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCH
Confidence 7899999999999864 233444444433 33221 111 1211 1122 2223456788888866654 5689
Q ss_pred HHHHHHHHhhHHHHhh
Q 000129 929 KEACNWIGYTYLYIRM 944 (2114)
Q Consensus 929 ~~~~~wl~~t~~~~r~ 944 (2114)
+++.+|+..||.|..+
T Consensus 445 ~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 445 EEAYNIVRRAYPYRDL 460 (876)
T ss_pred HHHHHHHhccCCcccC
Confidence 9999999999988653
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=449.54 Aligned_cols=450 Identities=23% Similarity=0.297 Sum_probs=331.8
Q ss_pred cCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 479 i~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.+.||++++++| ..|.+|||.|.+||+.+. .++|+||+||||||||++|.||++..+.... +....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeC
Confidence 466899999999 559999999999999987 4577999999999999999999999998752 11123568999999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|.|||..++.+++...+..+|+.|..-|||++...++ .+.+||++||||.+..+.-...-+..+.++++|||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999876654 4678999999999976665545567899999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
+.+ .||..+..-+.|+... ....|.||||||+.+.+++++||.........+-....++..+............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l----~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~- 235 (814)
T COG1201 161 LAESKRGVQLALSLERLREL----AGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD- 235 (814)
T ss_pred hhccccchhhhhhHHHHHhh----CcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc-
Confidence 976 7999999988888543 2288999999999999999999987631111221122222222211111110000
Q ss_pred HHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 714 QRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
.......+..+.+..+ ...+|||+|||..|+.++..|+..+.
T Consensus 236 ---~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------- 278 (814)
T COG1201 236 ---EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP---------------------------------- 278 (814)
T ss_pred ---cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC----------------------------------
Confidence 1111223333333333 34899999999999999999886531
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
..+..|||+++++.|..+|+.|++|+++++|||++|+-|||+.+++.||+ |+.|+ |+..++||+||+|
T Consensus 279 --~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsg 346 (814)
T COG1201 279 --DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAG 346 (814)
T ss_pred --CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhccccc
Confidence 35899999999999999999999999999999999999999999999998 76665 8899999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHH------hhcC---CCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHh
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLS------LMNQ---QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~------ll~~---~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r 943 (2114)
+. .+...++++++.+- .+.+.. .+.. ..++.-.-...|..++++.+... .-+.+++.+.+..+|.|..
T Consensus 347 Hr-~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~ 423 (814)
T COG1201 347 HR-LGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYAD 423 (814)
T ss_pred cc-cCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhcccccc
Confidence 84 56778999998872 222222 1221 23444444567777888777766 6678888888888887753
Q ss_pred hccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhH--CCCcccccCCCccccChhHHHHhhcccccccH
Q 000129 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR--NNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013 (2114)
Q Consensus 944 ~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~--~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~ 1013 (2114)
++. +-....++.|.. .+.++...... -..+.-.....+||.+..|+
T Consensus 424 ---------L~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 424 ---------LSR--------------EDFRLVLRYLAGEKNVYAKIWLDED-GLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred ---------CCH--------------HHHHHHHHHHhhcccceeEEeecCc-ceeccCccceeeeeeccccc
Confidence 222 224566777777 66666543222 12333233445566655554
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=399.00 Aligned_cols=342 Identities=22% Similarity=0.300 Sum_probs=267.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+..+.++++-. +|+.|++||++++|.++.+++ ||..|.||||||.+|.+||++++.+.. ..+.+++++||||||.|
T Consensus 68 v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--~~~~~lVLtPtRELA~Q 144 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--KLFFALVLTPTRELAQQ 144 (476)
T ss_pred cCHHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--CCceEEEecCcHHHHHH
Confidence 33344444433 699999999999999999777 999999999999999999999999842 33699999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+...+. .++...|+++..+.|+.... ....+++||+||||+++..++.+.+ ...+..++++|+||||++.+..
T Consensus 145 I~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk-gf~le~lk~LVlDEADrlLd~d-- 220 (476)
T KOG0330|consen 145 IAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK-GFSLEQLKFLVLDEADRLLDMD-- 220 (476)
T ss_pred HHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc-CccHHHhHHHhhchHHhhhhhh--
Confidence 999998 78888899999999998765 3455678999999999887776533 3368899999999999998765
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH---hc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ---AM 1559 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~---~~ 1559 (2114)
+...+.+|...++...|.+++|||++.. +.+..-+.. .+|+.+.+.-.....++....+. ..
T Consensus 221 ----F~~~ld~ILk~ip~erqt~LfsATMt~k--v~kL~rasl---------~~p~~v~~s~ky~tv~~lkQ~ylfv~~k 285 (476)
T KOG0330|consen 221 ----FEEELDYILKVIPRERQTFLFSATMTKK--VRKLQRASL---------DNPVKVAVSSKYQTVDHLKQTYLFVPGK 285 (476)
T ss_pred ----hHHHHHHHHHhcCccceEEEEEeecchh--hHHHHhhcc---------CCCeEEeccchhcchHHhhhheEecccc
Confidence 4455555666668899999999999753 222222221 12222222111111111111111 11
Q ss_pred CHHHH-HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1560 TKPTF-TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1560 ~~~~~-~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
.++.| ..+++. ..++++||||++...++.++..| ..+++....
T Consensus 286 ~K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L-----------------------------------~~lg~~a~~ 329 (476)
T KOG0330|consen 286 DKDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLL-----------------------------------RNLGFQAIP 329 (476)
T ss_pred ccchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHH-----------------------------------HhcCcceec
Confidence 22222 234444 56799999999999998888555 235566788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+||.|++..|.-.++.|++|...|||||++++||+|+|.+.+|| ||++|.+..+|+||+||+||+ +.+
T Consensus 330 LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----------NyDiP~~skDYIHRvGRtaRa--Grs 397 (476)
T KOG0330|consen 330 LHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----------NYDIPTHSKDYIHRVGRTARA--GRS 397 (476)
T ss_pred ccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----------ecCCCCcHHHHHHHccccccc--CCC
Confidence 99999999999999999999999999999999999999999999 999999999999999999999 589
Q ss_pred eEEEEEeecCcHHHHHHHHH
Q 000129 1719 GKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1719 G~~iil~~~~~~~~~~~~lR 1738 (2114)
|+++.+++..+.+.|.++..
T Consensus 398 G~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 398 GKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred cceEEEEehhhhHHHHHHHH
Confidence 99999999999898888873
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=422.77 Aligned_cols=344 Identities=21% Similarity=0.292 Sum_probs=260.0
Q ss_pred ChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 483 PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 483 p~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
++....++ .||+.|+|||.++++.++.+.+ ++..|.||||||++|++|++.++..+.. .....+++++|+++|||
T Consensus 99 s~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~--~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 99 SEELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQG--KLSRGDGPIVLVLAPTR 175 (519)
T ss_pred cHHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccc--cccCCCCCeEEEEcCcH
Confidence 33334443 7999999999999999999866 9999999999999999999999986321 11123578999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
+||.|+.+.+.++...++++..+++|+.+...+. ....+|+|+||+++ |.+.... ..++++.++|+||||.|.
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhh
Confidence 9999999999999888889999999999887764 35789999999998 7666655 467899999999999999
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHH-HHHhccccCceEeecCCcc-cccceeEEEeeccCch
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva-~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~ 712 (2114)
| ++.+.++.|+.++ .++..|.+++|||.|. ...++ .|+. ++....+....... ...+.+....+. .
T Consensus 253 dmGFe~qI~~Il~~i------~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~---~ 322 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQI------PRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD---E 322 (519)
T ss_pred ccccHHHHHHHHHhc------CCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC---H
Confidence 9 7999999888775 2344489999999984 22232 2333 22111000000001 111111111111 1
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+..++ ..+. ...++++||||+|++.|.++++.++..++.
T Consensus 323 ~~K~~~l~~lL-~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~--------------------------------- 367 (519)
T KOG0331|consen 323 TAKLRKLGKLL-EDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWP--------------------------------- 367 (519)
T ss_pred HHHHHHHHHHH-HHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcc---------------------------------
Confidence 11112122211 1121 223679999999999999999999875433
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
...+||+.++.+|..+++.|++|...|||||+++|||+|+|+|++||+ ||+|. ++.+|+||+||+|
T Consensus 368 ----a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 368 ----AVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGRTG 433 (519)
T ss_pred ----eeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCccc
Confidence 445599999999999999999999999999999999999999999999 88887 8899999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHH
Q 000129 873 RPQYDSYGEGIIITGHSELRY 893 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~ 893 (2114)
|.| +.|.++.+.+..+...
T Consensus 434 Ra~--~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 434 RAG--KKGTAITFFTSDNAKL 452 (519)
T ss_pred cCC--CCceEEEEEeHHHHHH
Confidence 977 8899999998866543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=455.59 Aligned_cols=354 Identities=21% Similarity=0.218 Sum_probs=267.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++.+++ .||++|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4677777777 68999999999999998766 5699999999999999999999998653 2358999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh--hccceEEEcCHhHHH-HHHhc-cCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWD-IITRK-SGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPek~d-~l~r~-~~~~~~l~~v~liIiDEaH~ 634 (2114)
||||+.|+.+.++++. ..++++..++|+.....+. ..+++|+|+||+++. .+... ......++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999999865 4578999999998755432 356899999999874 22221 11123578999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeecc-----
Q 000129 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (2114)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (2114)
+.+.+|..+..++.++.+.....+.+.|+|++|||++|..+++.++...+ ....+....|.......+-...
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP---VVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEEECCCCCCcCceEEEEecCCccccc
Confidence 98789999999999998877777778999999999999888887775432 3334443333332221111110
Q ss_pred -Cc--hhHH--HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 710 -~~--~~~~--~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
.. ...+ .......+...+ . .+.++||||+||+.|+.++..|+.......
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~-~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLV-A--EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHH-H--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 001111222211 1 267999999999999999998876421100
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
..+..++..|||||++++|..+++.|++|++++||||+++++|||+|++++||+ |+.+. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012345788999999999999999999999999999999999999999999999 66654 78899
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
+||+|||||.| ..|.+++++.++..+
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLD 389 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHH
Confidence 99999999987 669999998765433
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=414.12 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=261.3
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc----cCCCceEEEEEcccHHHHHH
Q 000129 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1331 ~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~----~~~~~~k~l~I~Ptr~La~q 1405 (2114)
....+.. ||..|+|||.+.++.++.+.+ ++..|.||||||++|++|++.++... ..++++++|+++||||||.|
T Consensus 102 ~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~Q 180 (519)
T KOG0331|consen 102 LMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQ 180 (519)
T ss_pred HHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHH
Confidence 3344433 799999999999999999777 99999999999999999999999862 23345799999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccC-CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+.+.+. .|+..++++..+++|+.+.. .+.+++ .+|+|+||+++..++.. ....++++.++|+||||++.+.+
T Consensus 181 V~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmG-- 255 (519)
T KOG0331|consen 181 VQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMG-- 255 (519)
T ss_pred HHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccc--
Confidence 999998 68887788899999998765 344555 59999999999999887 56679999999999999999877
Q ss_pred hHHHHHHHHHHHHhhcC-CCceEEEEcccCCC-hhHHHH-HhcCCCCceeecCCCCCccCcEEEEeccc----ccchHHH
Q 000129 1483 VLEVIVSRMRYIASQVE-NKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPGVRPVPLEIHIQGVD----ITNFEAR 1555 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~-~~~riV~lSATl~n-~~dla~-wl~~~~~~~~~f~~~~rpv~l~~~~~~~~----~~~~~~~ 1555 (2114)
+-..++.|..+++ ...|.+++|||.|. .+.++. +++ .+. .+.+-... ..+....
T Consensus 256 ----Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~--------------~i~ig~~~~~~a~~~i~qi 316 (519)
T KOG0331|consen 256 ----FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPI--------------QINVGNKKELKANHNIRQI 316 (519)
T ss_pred ----cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-Cce--------------EEEecchhhhhhhcchhhh
Confidence 6777777778874 44479999999986 345554 444 321 11111110 0001111
Q ss_pred HHh-----cCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000129 1556 MQA-----MTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2114)
Q Consensus 1556 ~~~-----~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2114)
... ........+..+. ...+++||||+|++.|..++..+..
T Consensus 317 ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~--------------------------------- 363 (519)
T KOG0331|consen 317 VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR--------------------------------- 363 (519)
T ss_pred hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh---------------------------------
Confidence 100 0111112222221 3567899999999999999876622
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
..+++..+||+.++.+|..+++.|++|+..|||||++++||+|+|++.+|| +|+.|.++.+|+||+||
T Consensus 364 --~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI----------nydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 364 --KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI----------NYDFPNNVEDYVHRIGR 431 (519)
T ss_pred --cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE----------eCCCCCCHHHHHhhcCc
Confidence 125688999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
+||+ +..|.++.|....+......+.
T Consensus 432 TGRa--~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 432 TGRA--GKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred cccC--CCCceEEEEEeHHHHHHHHHHH
Confidence 9998 7899999999987765554444
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=445.94 Aligned_cols=343 Identities=18% Similarity=0.240 Sum_probs=261.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||+.|+++|.++++.++++ +|++++||||||||+||.+|+++.+.. .+. .++|||+||||||.|+++.++ .++ .
T Consensus 33 g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~-~~~--~~aL~l~PtraLa~q~~~~l~-~l~-~ 106 (742)
T TIGR03817 33 GIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALAD-DPR--ATALYLAPTKALAADQLRAVR-ELT-L 106 (742)
T ss_pred CCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhh-CCC--cEEEEEcChHHHHHHHHHHHH-Hhc-c
Confidence 7999999999999999875 569999999999999999999999876 233 499999999999999999998 565 3
Q ss_pred CCcEEEEEcCCcccchh--hccCCcEEEEChhhHHH-HHh---hhcccccccceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDLK--LLEKGQIIISTPEKWDA-LSR---RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~--~l~~~~IIV~TPe~l~~-l~r---~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
.++++..++|+.+.+.+ ...+++|+|+||+++.. ++. +|. ..++++++||+||||.+.+..|..+..++.|+
T Consensus 107 ~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~--~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 107 RGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWA--RFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred CCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHH--HHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 47899999999876533 23457999999999863 222 232 34889999999999999877888999999999
Q ss_pred HHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccc-cchHH----HH-HhcCHHHHH
Q 000129 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI-TNFEA----RM-QAMTKPTFT 1565 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~-~~~~~----~~-~~~~~~~~~ 1565 (2114)
+.+....+.+.|+|++|||++|..++++++...+.. .......|..........+. ..... .. .........
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~--~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~ 262 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPAAAASRLIGAPVV--AVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAAD 262 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeE--EECCCCCCcCceEEEEecCCccccccccccccccchHHHHHH
Confidence 999888888899999999999998888776544322 22222223221111110000 00000 00 000011222
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+...+..+.++||||+||+.|+.++..|....... ...+..+|..||||+++
T Consensus 263 ~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~---------------------------~~~l~~~v~~~hgg~~~ 315 (742)
T TIGR03817 263 LLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEV---------------------------DPDLAERVAAYRAGYLP 315 (742)
T ss_pred HHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhh---------------------------ccccccchhheecCCCH
Confidence 333333457899999999999999998775422100 01124568899999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
++|+.+++.|++|++++||||+++++|||+|++.+|| +++.|.++.+|+||+|||||. +..|.+++++
T Consensus 316 ~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI----------~~~~P~s~~~y~qRiGRaGR~--G~~g~ai~v~ 383 (742)
T TIGR03817 316 EDRRELERALRDGELLGVATTNALELGVDISGLDAVV----------IAGFPGTRASLWQQAGRAGRR--GQGALVVLVA 383 (742)
T ss_pred HHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE----------EeCCCCCHHHHHHhccccCCC--CCCcEEEEEe
Confidence 9999999999999999999999999999999999999 899999999999999999998 5789999998
Q ss_pred ecCc
Q 000129 1726 HAPR 1729 (2114)
Q Consensus 1726 ~~~~ 1729 (2114)
.+..
T Consensus 384 ~~~~ 387 (742)
T TIGR03817 384 RDDP 387 (742)
T ss_pred CCCh
Confidence 7543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=432.95 Aligned_cols=346 Identities=21% Similarity=0.273 Sum_probs=256.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++...+ .||+.|||+|.++++.++.+ +|++++||||||||++|++|++..+...... ......++++|||+|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeC
Confidence 4688888877 69999999999999999866 5699999999999999999999887643211 111224679999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
||+||.|+.+.++.+....++++..+.|+.....+. ..+++|+|+||+++ +.+.+. ...++++++|||||||+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHH
Confidence 999999999999888777888888888877655432 35689999999998 555554 25678999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCccccc-ceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (2114)
|.+ ++.+.+..++..+ +..|++++|||+|+ .+.++.++..++ ..+......++.. +.+.+..+....
T Consensus 282 ml~~gf~~~i~~i~~~l--------~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQAL--------SQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHhC--------CCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 987 4555544443322 46799999999986 344555544321 1222333333322 222222222211
Q ss_pred hhHHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
+.. .+++.+..... ..++||||+|+..+..++..|....
T Consensus 352 ---k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 111 12222222211 4689999999999999988775421
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. +..+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 123567899999999999999999999999999999999999999999999 77765 78999999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
|||.| ..|.++++++.++...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99987 6799999998876554443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=397.43 Aligned_cols=347 Identities=21% Similarity=0.329 Sum_probs=276.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||..|||||.++||.++.+.+ +..||-||||||.+|++|+|..+.-.+.. ....++|+++|||+|+.|++..+
T Consensus 199 lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~ 272 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVT 272 (691)
T ss_pred cCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHH
Confidence 3999999999999999999877 99999999999999999999988644321 24458999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
+++.....|.|+.+.|+.++..+. ...++|+|+||+++ |++- ++.. ..+.++.++|+|||++|++ .|...+..
T Consensus 273 ~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlr-Ns~s-f~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 273 KQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLR-NSPS-FNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhc-cCCC-ccccceeEEEechHHHHHHHHHHHHHHH
Confidence 999888899999999999887664 46899999999998 5554 4433 5788999999999999987 57666666
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC--CcccccceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+.. .+.+.|.+++|||+. +.+.......+.+++-.|.. ...+..|.|.|+.+.......+-..+..+
T Consensus 351 ii~l-------cpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l- 420 (691)
T KOG0338|consen 351 IIRL-------CPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL- 420 (691)
T ss_pred HHHh-------ccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH-
Confidence 6543 467889999999997 66777777766677655544 34455678888877655433332222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
+.... ...+|||+.|++.|.++--.|--.++. ++-+||+
T Consensus 421 ---~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~-------------------------------------agElHGs 459 (691)
T KOG0338|consen 421 ---ITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLK-------------------------------------AGELHGS 459 (691)
T ss_pred ---HHHhc-ccceEEEEehHHHHHHHHHHHHHhhch-------------------------------------hhhhccc
Confidence 22222 567999999999998876655444433 4455999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|++.+|...++.|++++++|||||++++||+|++++.+||| |+.|. ++..|+||+||+.|+| ..|.+|
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsV 527 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSV 527 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceE
Confidence 99999999999999999999999999999999999999999 66554 7888999999999998 789999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchh
Q 000129 884 IITGHSELRYYLSLMNQQLPIESQF 908 (2114)
Q Consensus 884 il~~~~e~~~~~~ll~~~~pies~l 908 (2114)
.++..++...++.++....-..+.+
T Consensus 528 tlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred EEeccccHHHHHHHHhhhhhcccch
Confidence 9999999888777766543333333
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=415.87 Aligned_cols=400 Identities=27% Similarity=0.377 Sum_probs=309.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|-.+|++||-... .++.|+|.|+|.||||++|..+|.-.-.. ..|+||.+|.|||.+|.++.|+..|
T Consensus 297 elD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 78899999998754 55669999999999999999988755433 2389999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
+. |+.+|||.+... .+.++|+|.|-+..++-+.. ..++++.+||+||+|.+.| +||.++|.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 75 559999998765 58899999998855554444 4678899999999999999 899999988653
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC------c------------hhH-
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK------K------------PLQ- 714 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~------~------------~~~- 714 (2114)
.+..+++|+||||+||..++|.|++....+.+++....-|||||+..+..-..- + ...
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 478999999999999999999999988788888888889999998765421000 0 000
Q ss_pred ---HHH---------------------Hh-----------hH---HHHHHHHHHhC---CCeEEEEecChHHHHHHHHHH
Q 000129 715 ---RFQ---------------------LM-----------ND---LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (2114)
Q Consensus 715 ---~~~---------------------~~-----------~~---~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (2114)
+.. .. ++ ..|-.+..+.. --|++|||-||+.|...|..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 000 00 00 12333333333 238999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHH---HHhhhcc--------cCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCce
Q 000129 754 RDTALENDTLGRFLKEDSVSREI---LQSHTDM--------VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822 (2114)
Q Consensus 754 ~~~~~~~~~l~~~l~~~~~~~~~---l~~~~~~--------~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~ 822 (2114)
....+... ....++ +.+.... .+-..+.+++..|+|+||||+-+--++.||-+|..|-++
T Consensus 588 ~~~nL~~~---------~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK 658 (1248)
T KOG0947|consen 588 TNLNLTDS---------KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK 658 (1248)
T ss_pred hccCcccc---------hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE
Confidence 86543221 111111 1111111 112356788899999999999999999999999999999
Q ss_pred EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC--cHHHHHHh-hc
Q 000129 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MN 899 (2114)
Q Consensus 823 VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--e~~~~~~l-l~ 899 (2114)
||+||-|+|+|||+|+.+||+.+....|+.. +.++.+-+|.||+|||||.|.|..|.+|+++... +...+..+ ++
T Consensus 659 VLFATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 659 VLFATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred EEeehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 9999999999999999999999988888764 6889999999999999999999999999998874 66677775 77
Q ss_pred CCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhH
Q 000129 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939 (2114)
Q Consensus 900 ~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~ 939 (2114)
.+.+++|||.-.....||.--+.. ..+-+.++++|
T Consensus 737 ~~~~L~SQFRlTY~MILnLLRve~-----lrvEdm~krSf 771 (1248)
T KOG0947|consen 737 GPTRLESQFRLTYGMILNLLRVEA-----LRVEDMMKRSF 771 (1248)
T ss_pred CCchhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 889999999876666666432221 23445666666
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=428.98 Aligned_cols=345 Identities=19% Similarity=0.275 Sum_probs=257.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++..++ .||..|||+|.++++.++.+. |+|++||||||||++|++|+++.+...... ......+++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEEEEeC
Confidence 3577777777 799999999999999988765 599999999999999999999998654321 01123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
|++||.|+++.+..+....++++..++|+.+.+.+. ...++|+|+||+++..+..... ..++++++|||||||++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888899999999998766542 3578999999999844433322 45788999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
.+ .+...+..++.. .+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~~-------l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLAK-------LPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHHh-------CCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 454555444433 4567789999999986 3455555443321 111111111222233333322211
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+... ...+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~-----l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKREL-----LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHH-----HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 11111 1223333345799999999999999999886543
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 23567799999999999999999999999999999999999999999999 77665 78899999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHH
Q 000129 874 PQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
.| ..|.++.++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 87 679999988877655443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=426.69 Aligned_cols=346 Identities=15% Similarity=0.203 Sum_probs=253.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++..++ .||..|+|+|+++++.++.+. |++++||||||||++|++|+++.+.......+ ....++++||++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECCc
Confidence 577777776 799999999999999998775 59999999999999999999999876432111 11245799999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++||.|+++.+..+....|+++..++|+.....+. ...++|+|+||+++..+.+.. ...++++++|||||||++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--HINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcccccccEEEEecHHHHh
Confidence 99999999999998888899999999987655432 246799999999984333332 2457889999999999998
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCCc-ccccceeEEEeeccCchh
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSY-RPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~-rpv~l~~~~~~~~~~~~~ 713 (2114)
+ ++...++.++.++ . .....+.+++|||++. .+..+.......+.+. ..... ....+.+.++.. ...
T Consensus 171 ~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~--~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~ 240 (423)
T PRK04837 171 DLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSY--RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNE 240 (423)
T ss_pred hcccHHHHHHHHHhC----C-CccceeEEEEeccCCH--HHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHH
Confidence 7 5655555554433 1 1134567899999984 2333322221222222 12111 112222222211 111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+...+ .. +.......++||||++++.|+.++..|...+
T Consensus 241 ~k~~~l----~~-ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 279 (423)
T PRK04837 241 EKMRLL----QT-LIEEEWPDRAIIFANTKHRCEEIWGHLAADG------------------------------------ 279 (423)
T ss_pred HHHHHH----HH-HHHhcCCCeEEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 222221 22 2222336799999999999999999887533
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||++. +..+|+||+|||||
T Consensus 280 -~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~gR 348 (423)
T PRK04837 280 -HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRTGR 348 (423)
T ss_pred -CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEeccccccC
Confidence 24678899999999999999999999999999999999999999999999 66654 67789999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHH
Q 000129 874 PQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
.| ..|.|+.+.++.+...+.
T Consensus 349 ~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 349 AG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CC--CCeeEEEEeCHHHHHHHH
Confidence 88 779999999887654444
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=431.35 Aligned_cols=360 Identities=19% Similarity=0.284 Sum_probs=262.0
Q ss_pred CccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-----C
Q 000129 1314 TELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----E 1387 (2114)
Q Consensus 1314 t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-----~ 1387 (2114)
.++..+..+ .|.......+.. ||..|||+|.++++.++.+ +|++++||||||||++|++|++.++.... .
T Consensus 118 ~pi~~f~~~---~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 118 PPILSFSSC---GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred chhcCHHhC---CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 344444433 355566666655 7999999999999999975 56999999999999999999998875321 1
Q ss_pred CCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccc
Q 000129 1388 TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (2114)
Q Consensus 1388 ~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (2114)
..++++|||+||++||.|+++.++ .+....++++..+.|+..... +.....+|+|+||++|..++.+ ....+++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~ 270 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDN 270 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchh
Confidence 234599999999999999998887 677666788877777655432 2234569999999999888776 3557899
Q ss_pred eeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccC-cEE
Q 000129 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVP-LEI 1542 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~-l~~ 1542 (2114)
+++||+||||++.+.+ +...+..+...+ ++.|++++|||+++. +.++.++..... .+......++.. +..
T Consensus 271 v~~lViDEad~ml~~g------f~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~~v~q 342 (518)
T PLN00206 271 VSVLVLDEVDCMLERG------FRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNKAVKQ 342 (518)
T ss_pred eeEEEeecHHHHhhcc------hHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCcceeE
Confidence 9999999999998654 222333333333 367999999999874 467777654432 233333223222 111
Q ss_pred EEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhh
Q 000129 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2114)
Q Consensus 1543 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2114)
........ .. ....+..+........++||||+|+..|..++..|..
T Consensus 343 ~~~~~~~~---~k----~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~-------------------------- 389 (518)
T PLN00206 343 LAIWVETK---QK----KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV-------------------------- 389 (518)
T ss_pred EEEeccch---hH----HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh--------------------------
Confidence 11111110 00 0112222222212346899999999999888865522
Q ss_pred hhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhH
Q 000129 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTD 1702 (2114)
Q Consensus 1623 i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~ 1702 (2114)
..+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+
T Consensus 390 --------~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI----------~~d~P~s~~~ 451 (518)
T PLN00206 390 --------VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI----------IFDMPNTIKE 451 (518)
T ss_pred --------ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE----------EeCCCCCHHH
Confidence 1234578899999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1703 LLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1703 ~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
|+||+|||||. +..|.|++|+...+...+..+.+.++
T Consensus 452 yihRiGRaGR~--g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 452 YIHQIGRASRM--GEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred HHHhccccccC--CCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999998 57899999999887776666664433
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=428.94 Aligned_cols=337 Identities=21% Similarity=0.322 Sum_probs=257.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++...+ .||.+|||+|.+|++.++.+. |++++||||||||++|++|+++.+.... ...+++|++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~Pt 81 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPT 81 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCC
Confidence 566666666 689999999999999988765 5999999999999999999999885432 23589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++||.|+.+.++.+.... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADRM 159 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHHH
Confidence 999999999998876544 78999999998765442 3578999999999844444332 45789999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EeecCCcccccceeEEEeeccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~-~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
.+ .++..++.++.. .+...|++++|||+|+ .+..+.......+. +..........+.+.++.+....
T Consensus 160 l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~--~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-- 228 (460)
T PRK11776 160 LDMGFQDAIDAIIRQ-------APARRQTLLFSATYPE--GIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE-- 228 (460)
T ss_pred hCcCcHHHHHHHHHh-------CCcccEEEEEEecCcH--HHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH--
Confidence 87 566666666544 3567899999999984 33333332212222 22333323334555555443322
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
+...+.. +.......++||||+|++.+..++..|...+
T Consensus 229 -k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~------------------------------------ 266 (460)
T PRK11776 229 -RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG------------------------------------ 266 (460)
T ss_pred -HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2222222 2233446789999999999999999987643
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+. +..+|+||+|||||
T Consensus 267 -~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtGR 335 (460)
T PRK11776 267 -FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTGR 335 (460)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhcccccC
Confidence 24678899999999999999999999999999999999999999999999 55543 56689999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHH
Q 000129 874 PQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
.| ..|.|+.+++..+...+.
T Consensus 336 ~g--~~G~ai~l~~~~e~~~~~ 355 (460)
T PRK11776 336 AG--SKGLALSLVAPEEMQRAN 355 (460)
T ss_pred CC--CcceEEEEEchhHHHHHH
Confidence 87 679999999887755443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=432.31 Aligned_cols=343 Identities=18% Similarity=0.249 Sum_probs=257.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+|+++.+.+ .||++|+|+|.++++.++.+. ++|++||||||||++|++|++..+...... ....++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCcEEEEECC
Confidence 4688888877 699999999999999998876 599999999999999999999887653211 0123568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..++++++|||||||+
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~---~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV---TNLRRVTYLVLDEADR 288 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC---CChhhCcEEEeehHHh
Confidence 999999999999998877889999999987655432 35789999999998 5555432 4678899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcc---cccceeEEEeecc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQV 709 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~ 709 (2114)
+.+ .+.+.+..|+.. ..+..|++++|||+|. .+.++..+... ..+........ ...+.+.+..+..
T Consensus 289 mld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEE 359 (545)
T ss_pred hhhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEec
Confidence 987 566666655543 3567899999999985 23344433221 12222111111 1123333333322
Q ss_pred CchhHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 710 KKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
. .+...+..+ +.... ...++||||+|++.|+.+++.|...+.
T Consensus 360 ~---~k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~------------------------------ 402 (545)
T PTZ00110 360 H---EKRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDGW------------------------------ 402 (545)
T ss_pred h---hHHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcCC------------------------------
Confidence 2 122222222 22222 467999999999999999998875432
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. ++.+|+||+
T Consensus 403 -------~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRi 465 (545)
T PTZ00110 403 -------PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRI 465 (545)
T ss_pred -------cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHh
Confidence 2456799999999999999999999999999999999999999999999 77765 788999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
|||||.| ..|.|+.+++..+.....
T Consensus 466 GRtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 466 GRTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred cccccCC--CCceEEEEECcchHHHHH
Confidence 9999987 679999999887654433
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=424.55 Aligned_cols=349 Identities=18% Similarity=0.278 Sum_probs=265.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC----CCceEEEEEcccHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~----~~~~k~l~I~Ptr~ 1401 (2114)
|.....+.+.. ||..|||+|.++|+.++++. |++++||||||||++|++|+++.+..... ...+++|||+||++
T Consensus 8 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptre 86 (456)
T PRK10590 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86 (456)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHH
Confidence 34455556654 79999999999999999865 59999999999999999999999865321 12348999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
||.|+++.++ .+....++++..++|+.+.+.+ .....+|+|+||++|..++.. ....++++++|||||||++.+
T Consensus 87 La~Qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 87 LAAQIGENVR-DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHH-HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhc
Confidence 9999999998 4666678899999998776532 234569999999999887765 344688999999999999987
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.. +...++.+...++...|++++|||+++ ..+++.++...+..+...........+..++...+... .
T Consensus 164 ~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k-- 232 (456)
T PRK10590 164 MG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR---K-- 232 (456)
T ss_pred cc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH---H--
Confidence 55 444555566666778899999999987 45677766554433322221111222222222111100 0
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
......+... ....++||||+++..|..++..|.. .+..+.
T Consensus 233 ---~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~ 273 (456)
T PRK10590 233 ---RELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNK-----------------------------------DGIRSA 273 (456)
T ss_pred ---HHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHH-----------------------------------CCCCEE
Confidence 0111222222 3456899999999999988876632 234578
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||. +.
T Consensus 274 ~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----------~~~~P~~~~~yvqR~GRaGR~--g~ 341 (456)
T PRK10590 274 AIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV----------NYELPNVPEDYVHRIGRTGRA--AA 341 (456)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE----------EeCCCCCHHHhhhhccccccC--CC
Confidence 999999999999999999999999999999999999999999999 899999999999999999998 67
Q ss_pred ceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1718 SGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
.|.|++++...+...++.+.+.+.
T Consensus 342 ~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 342 TGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred CeeEEEEecHHHHHHHHHHHHHhc
Confidence 899999998888777777765544
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=430.80 Aligned_cols=345 Identities=15% Similarity=0.223 Sum_probs=253.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++...+ .||..|||+|.++|+.++.+.+ ++++||||||||++|++|+++.+...... .......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~-~~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPAL-ADRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccc-cccccCCceEEEEeCc
Confidence 566677766 7999999999999999987755 99999999999999999999988653210 0011134689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++||.|+++.+.++....++++..++|+.....+. ...++|+|+||+++..+.+... ...+..+++|||||||++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999998765432 2467999999999843333321 1356789999999999998
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEeec-CCcccccceeEEEeeccCchh
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD-NSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~-~~~f~-~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
+ .+...++.++.++. .....|++++|||+++ .+..+.......+ .+.+. .......+.+.++... ..
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~--~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---~~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSH--RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA---DE 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccH--HHHHHHHHHhcCCcEEEeccccccccceeEEEEecC---HH
Confidence 7 56666666655441 1236789999999985 2222222211111 11222 2222223333333221 11
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+...+ . .+.....+.++||||+|+..++.+++.|...+
T Consensus 243 ~k~~~L----~-~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLL----L-GLLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHH----H-HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 122211 1 12233346799999999999999999887543
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 23778899999999999999999999999999999999999999999999 56553 77899999999999
Q ss_pred CCCCCceEEEEEcCCCcHHH
Q 000129 874 PQYDSYGEGIIITGHSELRY 893 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~ 893 (2114)
.| ..|.|++++...+...
T Consensus 351 ~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 351 LG--EEGDAISFACERYAMS 368 (572)
T ss_pred CC--CCceEEEEecHHHHHH
Confidence 88 6799999988765443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=421.47 Aligned_cols=345 Identities=18% Similarity=0.257 Sum_probs=262.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.......+.. ||..|||+|.+|++.+++++ |++++||||||||++|.+|+++.+..... .++++|++||++||.|
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~~--~~~~lil~PtreLa~Q 87 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQALVLCPTRELADQ 87 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhccC--CceEEEEeCCHHHHHH
Confidence 44455556655 79999999999999999865 59999999999999999999999865322 3489999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccch--hhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+++.++. +... .+.++..++|+.+.+. ..+ ..++|+|+||++|..++++ ....++++++||+||||++.+.+
T Consensus 88 ~~~~~~~-~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g- 163 (460)
T PRK11776 88 VAKEIRR-LARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMG- 163 (460)
T ss_pred HHHHHHH-HHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcC-
Confidence 9999984 5433 4789999999887642 222 4569999999999988876 34568899999999999988665
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+...+..+...++...|++++|||+++. ..++..+...+.. +.+........+...+....... ..
T Consensus 164 -----~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-i~~~~~~~~~~i~~~~~~~~~~~---k~---- 230 (460)
T PRK11776 164 -----FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVE-VKVESTHDLPAIEQRFYEVSPDE---RL---- 230 (460)
T ss_pred -----cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEE-EEECcCCCCCCeeEEEEEeCcHH---HH----
Confidence 4444555566667889999999999763 3455544333322 22222222222333332221111 11
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
.....++.. ...+++||||+|++.|+.++..|.. .+..+..+|
T Consensus 231 -~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~~~~v~~~h 273 (460)
T PRK11776 231 -PALQRLLLH-HQPESCVVFCNTKKECQEVADALNA-----------------------------------QGFSALALH 273 (460)
T ss_pred -HHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHh-----------------------------------CCCcEEEEe
Confidence 112223333 3457899999999999999977732 134689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 274 g~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----------~~d~p~~~~~yiqR~GRtGR~--g~~G~ 341 (460)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----------NYELARDPEVHVHRIGRTGRA--GSKGL 341 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----------EecCCCCHhHhhhhcccccCC--CCcce
Confidence 999999999999999999999999999999999999999999 899999999999999999998 67899
Q ss_pred EEEEeecCcHHHHHHHHHhc
Q 000129 1721 CVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~ 1740 (2114)
|+.++...+...++.+.+..
T Consensus 342 ai~l~~~~e~~~~~~i~~~~ 361 (460)
T PRK11776 342 ALSLVAPEEMQRANAIEDYL 361 (460)
T ss_pred EEEEEchhHHHHHHHHHHHh
Confidence 99999887766666555443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=424.60 Aligned_cols=352 Identities=16% Similarity=0.230 Sum_probs=263.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~ 1401 (2114)
.++....+.+.. ||..|+|+|.++++.++.+++ +|++||||||||++|++|++.++.... ...++.+|||+||++
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRD-MIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 345556667765 799999999999999998665 999999999999999999998876521 122458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
||.|+.+.++ .|+...++++..++|+..... .....++|+|+||+++..++.+ ....+.++++||+||||++.+
T Consensus 215 La~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhh
Confidence 9999999988 677767888888888876542 2334569999999999888876 344688999999999999987
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCC-C-ccCcEEEEecccccchHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV-R-PVPLEIHIQGVDITNFEAR 1555 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~-r-pv~l~~~~~~~~~~~~~~~ 1555 (2114)
.. +...++.+..++....|++++|||++.. ..++.++-......+...... . ...+...+.... .. ..
T Consensus 292 ~g------f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~--~~-~k 362 (545)
T PTZ00110 292 MG------FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE--EH-EK 362 (545)
T ss_pred cc------hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe--ch-hH
Confidence 55 4445566666677889999999999763 456655543211111111110 0 001111111111 00 00
Q ss_pred HHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000129 1556 MQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2114)
Q Consensus 1556 ~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2114)
. ..+..++..+ ..+.++||||+|++.|+.++..|.. .+.
T Consensus 363 ~-----~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~-----------------------------------~g~ 402 (545)
T PTZ00110 363 R-----GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL-----------------------------------DGW 402 (545)
T ss_pred H-----HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH-----------------------------------cCC
Confidence 0 1112222222 2577999999999999999876632 123
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.
T Consensus 403 ~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI----------~~d~P~s~~~yvqRiGRtGR~- 471 (545)
T PTZ00110 403 PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI----------NFDFPNQIEDYVHRIGRTGRA- 471 (545)
T ss_pred cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccC-
Confidence 578899999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1715 LDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
+..|.|++|+...+....+.+++++..
T Consensus 472 -G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 472 -GAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred -CCCceEEEEECcchHHHHHHHHHHHHH
Confidence 679999999998887777766655443
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=445.57 Aligned_cols=401 Identities=20% Similarity=0.261 Sum_probs=265.6
Q ss_pred EEccCCCchHHHHHHHHHHHHHhccCCC--CCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc------------cCCcEE
Q 000129 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (2114)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~--g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~------------~~gi~v 581 (2114)
|+||||||||++|.+|++..+....... +.....+.++|||+|+|||+.|+.++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542110 00112357999999999999999999875221 247999
Q ss_pred EEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhc
Q 000129 582 RELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 582 ~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~ 657 (2114)
...+||.+...+. .+.++|+|||||+|+.+.... ....++++++|||||+|.|.+ .||..++.++.|+... .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999877643 247899999999996654432 235789999999999999987 5999999999998654 3
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCch-------------hHHHHHhhHHHH
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP-------------LQRFQLMNDLCY 724 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~-------------~~~~~~~~~~~~ 724 (2114)
..+.|+||||||++|.+++++||.......+ +.....++.++...+ ....... ..+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~I-v~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTV-VNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEE-ECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHH
Confidence 4578999999999999999999975421112 223344555554222 1111000 000111111222
Q ss_pred HHHHH-HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh---hhccCceEEe
Q 000129 725 EKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK---DLLPYGFAIH 800 (2114)
Q Consensus 725 ~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~---~ll~~gv~~h 800 (2114)
..+.. ....+++|||||||+.|+.++..|.+........ ..........+ ....+.... ......+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR--SPSIAVDAAHF-----ESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc--cccccchhhhh-----hhccccchhccccccceeeeec
Confidence 22332 2336799999999999999999998653210000 00000000000 000011111 1112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||+|++++|..+++.|++|.+++||||+++++|||+|++++||+ |+.+. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999999 55443 889999999999996 46677
Q ss_pred EEEEEcCCCc-HHH----HHHhhcCC-Ccccc--hhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHH
Q 000129 881 EGIIITGHSE-LRY----YLSLMNQQ-LPIES--QFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (2114)
Q Consensus 881 ~~iil~~~~e-~~~----~~~ll~~~-~pies--~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~ 941 (2114)
.++++..+.. .-. ...++... .|+.. .-...|..|+.+.++.+.+ +.++..+.+..+|.|
T Consensus 377 ~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCc
Confidence 8887666532 111 12233322 12222 2234677777777776543 356666655555544
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=424.46 Aligned_cols=340 Identities=22% Similarity=0.348 Sum_probs=267.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++.+++ .||..|+|||.++||.++.+.+ ++++|+||||||.+|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 455555555 6999999999999999999855 99999999999999999999997742110 11119999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|+||.|+++.+..+.... ++++..++|+.+...+. ...++|+|+||+++ |++.+. ...++.++++|+||||.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEeccHhh
Confidence 999999999999988877 79999999998876653 23599999999997 777776 36788999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC--Cc--ccccceeEEEeecc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SY--RPVPLSQQYIGIQV 709 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~--~~--rpv~l~~~~~~~~~ 709 (2114)
|+| ++.+.++.|+..+ +.+.|++++|||+|. .+..+.......+...... .. .+..+.+.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 999 6888888777654 458999999999996 5766666544444322222 21 34456666665543
Q ss_pred CchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
.. .++..+. .+.+.....++||||+|+..+..++..|...++.
T Consensus 257 ~~--~k~~~L~-----~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~------------------------------ 299 (513)
T COG0513 257 EE--EKLELLL-----KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK------------------------------ 299 (513)
T ss_pred HH--HHHHHHH-----HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe------------------------------
Confidence 32 2222222 2334444568999999999999999998876533
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
+..+||+|++++|..+++.|++|..+|||||++++||+|+|++.+||| ||.+. +..+|+||+|
T Consensus 300 -------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 300 -------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred -------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 556699999999999999999999999999999999999999999999 66554 6678999999
Q ss_pred ccCCCCCCCceEEEEEcCCC-cHHHHHH
Q 000129 870 RAGRPQYDSYGEGIIITGHS-ELRYYLS 896 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-e~~~~~~ 896 (2114)
|+||.| ..|.++.++++. +...+..
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 999998 789999999875 5554443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=416.66 Aligned_cols=344 Identities=20% Similarity=0.274 Sum_probs=253.3
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-----CCceEEEEEccc
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPL 1399 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-----~~~~k~l~I~Pt 1399 (2114)
.|.....+.+.. ||..|+|+|.+|++.+++++ |++++||||||||++|++|+++.+..... ..++++|||+||
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 355556666655 79999999999999999865 59999999999999999999998865321 123589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1400 r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
++||.|+++.+. .+....|+++..++|+...+ ...+. ..+|+|+||+++..++++ ....+.+++++|+||||++
T Consensus 93 reLa~Qi~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAE-PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 999999999988 56666789999999876644 22333 459999999999888765 3456889999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhhcC--CCceEEEEcccCCChh-HHH-HHhcCCCCceeecCCCCC-ccCcEEEEecccccc
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLANAK-DLG-EWIGATSHGLFNFPPGVR-PVPLEIHIQGVDITN 1551 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~--~~~riV~lSATl~n~~-dla-~wl~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~ 1551 (2114)
.+.+ +...++.+...++ ...+.+++|||++..- .+. .++... ..+...+... ...+...+.. ..
T Consensus 170 ~~~~------f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~---~~ 238 (423)
T PRK04837 170 FDLG------FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFY---PS 238 (423)
T ss_pred hhcc------cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEe---CC
Confidence 7654 3334444444444 2456799999997532 332 333322 1222222211 1111111110 01
Q ss_pred hHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHH
Q 000129 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (2114)
Q Consensus 1552 ~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (2114)
..... .....+... ....++||||+++..|+.++..|..
T Consensus 239 ~~~k~-----~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------- 277 (423)
T PRK04837 239 NEEKM-----RLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAA----------------------------------- 277 (423)
T ss_pred HHHHH-----HHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence 11111 111222222 3457899999999999988876632
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1632 l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.+..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+||||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI----------~~d~P~s~~~yiqR~GR~g 347 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF----------NYDLPDDCEDYVHRIGRTG 347 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE----------EeCCCCchhheEecccccc
Confidence 245689999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1712 RPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|. +..|.|+.|+.+.+...+..+.
T Consensus 348 R~--G~~G~ai~~~~~~~~~~~~~i~ 371 (423)
T PRK04837 348 RA--GASGHSISLACEEYALNLPAIE 371 (423)
T ss_pred CC--CCCeeEEEEeCHHHHHHHHHHH
Confidence 98 6889999999887666555544
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=386.29 Aligned_cols=343 Identities=18% Similarity=0.293 Sum_probs=271.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g-~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.||..|+|||.+|+|..++.+ ++|..|.||||||.+|++|++-.+...+.... .-...++++++++|||+|++|+..+
T Consensus 263 ~~y~eptpIqR~aipl~lQ~r-D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNR-DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchhccC-CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 599999999999999777655 49999999999999999999998876543221 1234578999999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHH
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (2114)
-.+++..+|+++..+.|+.+++.+- ...|+|+|+||+++ |++-++. ..++.+.+||+|||+.|.| ++.+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~---lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY---LVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH---HHhccCceEeccchhhhhcccccHHHH
Confidence 9999999999999999999988762 46899999999998 7777765 4678899999999999999 7888888
Q ss_pred HHHHHHHHHH------------------hhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCCcccccc-eeEE
Q 000129 645 SIVARTVRQI------------------ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPL-SQQY 704 (2114)
Q Consensus 645 ~iv~rl~~~~------------------~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~rpv~l-~~~~ 704 (2114)
.+++.+...- .....-.|.+.||||+|. .+...++..+..++.+ ....-+|.+. +|.+
T Consensus 419 ~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p--~verlar~ylr~pv~vtig~~gk~~~rveQ~v 496 (673)
T KOG0333|consen 419 KILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPP--AVERLARSYLRRPVVVTIGSAGKPTPRVEQKV 496 (673)
T ss_pred HHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCCh--HHHHHHHHHhhCCeEEEeccCCCCccchheEE
Confidence 8887653211 111122688999999995 3444444433444443 4444566664 4455
Q ss_pred EeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
+.++.....++ +.+ +++.....++|||+|+++.|..+|+.|...++.
T Consensus 497 ~m~~ed~k~kk---L~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~------------------------- 543 (673)
T KOG0333|consen 497 EMVSEDEKRKK---LIE-----ILESNFDPPIIIFVNTKKGADALAKILEKAGYK------------------------- 543 (673)
T ss_pred EEecchHHHHH---HHH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhccce-------------------------
Confidence 54554433222 222 233334679999999999999999999876644
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
+..+|||-++++|..++..|+.|..+|||||+++++|||+|+|.+||| ||..+ |+.+|
T Consensus 544 ------------~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak------sieDY 601 (673)
T KOG0333|consen 544 ------------VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK------SIEDY 601 (673)
T ss_pred ------------EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchhh------hHHHH
Confidence 455699999999999999999999999999999999999999999999 88877 89999
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+||+||+||+| +.|.++.|++..+...|..
T Consensus 602 tHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 602 THRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred HHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 99999999998 8899999999877654443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=417.38 Aligned_cols=342 Identities=23% Similarity=0.297 Sum_probs=257.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+.+.+ .||..|+++|.++++.++++. +++++||||+|||++|++|+++.+...... .....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEEEECC
Confidence 3566677777 799999999999999999775 599999999999999999999998754221 123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+++.+..+....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..++.+++|||||||+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah~ 158 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEADR 158 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHHH
Confidence 999999999999998888899999999998765542 34679999999997 4444322 3467899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccc-cceeEEEeeccC
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVK 710 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~ 710 (2114)
+.+ .++..++.+... .+...|++++|||++. ..++..++...+. .+......+.. .+.+.+....
T Consensus 159 ~l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~-- 227 (434)
T PRK11192 159 MLDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRAD-- 227 (434)
T ss_pred HhCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEeC--
Confidence 987 567766665443 3456789999999864 4555555543321 11122211111 1222222111
Q ss_pred chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
....+.. .+. .+.......++||||+++..+..++..|...+
T Consensus 228 ~~~~k~~----~l~-~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--------------------------------- 269 (434)
T PRK11192 228 DLEHKTA----LLC-HLLKQPEVTRSIVFVRTRERVHELAGWLRKAG--------------------------------- 269 (434)
T ss_pred CHHHHHH----HHH-HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---------------------------------
Confidence 1111222 122 23333346799999999999999999887532
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |...|+||+||
T Consensus 270 ----~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR 335 (434)
T PRK11192 270 ----INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGR 335 (434)
T ss_pred ----CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhcccc
Confidence 23678899999999999999999999999999999999999999999999 66654 77899999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
|||.| ..|.++.+.+..+...+.
T Consensus 336 ~gR~g--~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 336 TGRAG--RKGTAISLVEAHDHLLLG 358 (434)
T ss_pred cccCC--CCceEEEEecHHHHHHHH
Confidence 99987 679999998876654443
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=439.26 Aligned_cols=350 Identities=23% Similarity=0.356 Sum_probs=262.2
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC----CCceEEEEEcccHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~----~~~~k~l~I~Ptr~La~ 1404 (2114)
+.++..+. +|..|||+|+++++.+++ ++|++++||||||||++|.+|+++.+..... ..++++|||+|+++|+.
T Consensus 20 ~~v~~~~~~~~~~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFGTFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 45555554 689999999999999877 5579999999999999999999998875321 22458999999999999
Q ss_pred HHHHHHHHHh----------cCCC-CcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEe
Q 000129 1405 ERYRDWEIKF----------GQGL-GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFII 1470 (2114)
Q Consensus 1405 q~~~~~~~~f----------~~~~-g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIi 1470 (2114)
|+++++...+ +... ++++...+|+++...+ .+ ..++|+|+|||+|..+++.......++++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 9998765322 2222 7789999999876533 23 3569999999999988876544457899999999
Q ss_pred cccccccC-CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCC-----Cc-eeecCCCCCccCcEEE
Q 000129 1471 DELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-----HG-LFNFPPGVRPVPLEIH 1543 (2114)
Q Consensus 1471 DEaH~l~~-~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~-----~~-~~~f~~~~rpv~l~~~ 1543 (2114)
||+|.+.+ .+|..++..+.++..+. +.+.|+|++|||++|.++++.|++... .. .+......++..+.+.
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999885 57999999999998874 457899999999999999999997641 11 1111112223222222
Q ss_pred EecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhh
Q 000129 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623 (2114)
Q Consensus 1544 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i 1623 (2114)
........ .....+....+..+...+..++++||||||++.|+.++..|...+..
T Consensus 256 ~p~~~l~~--~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~----------------------- 310 (876)
T PRK13767 256 SPVDDLIH--TPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE----------------------- 310 (876)
T ss_pred ccCccccc--cccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh-----------------------
Confidence 11000000 00011223344555555566789999999999999999887542210
Q ss_pred hHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHH
Q 000129 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL 1703 (2114)
Q Consensus 1624 ~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~ 1703 (2114)
.....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|
T Consensus 311 ------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI----------~~~~P~sv~~y 374 (876)
T PRK13767 311 ------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV----------LLGSPKSVSRL 374 (876)
T ss_pred ------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE----------EeCCCCCHHHH
Confidence 01345799999999999999999999999999999999999999999999999 78899999999
Q ss_pred HHhHcccCCCCCCCceEEEEEe
Q 000129 1704 LQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1704 lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
+||+|||||.+ +..+.+++++
T Consensus 375 lQRiGRaGR~~-g~~~~g~ii~ 395 (876)
T PRK13767 375 LQRIGRAGHRL-GEVSKGRIIV 395 (876)
T ss_pred HHhcccCCCCC-CCCCcEEEEE
Confidence 99999999964 3333344443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=387.03 Aligned_cols=348 Identities=20% Similarity=0.270 Sum_probs=274.8
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC--ceEEEEEcccHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEAL 1402 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~--~~k~l~I~Ptr~L 1402 (2114)
+|..+.++.+-. ||..|||||.++||.++-+.+ ++.||.||||||.+|.+|+|..+.-. +.+ ..|+||++|||+|
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYr-Pk~~~~TRVLVL~PTREL 264 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYR-PKKVAATRVLVLVPTREL 264 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcC-cccCcceeEEEEeccHHH
Confidence 344566777655 899999999999999988777 99999999999999999999998863 222 2489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|++...+ .++.+..+.|+.+.|+.+...+ .+ ..+||+|+||++|..++|+.. ...+.++.++|+||||+++++
T Consensus 265 aiQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 265 AIQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred HHHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-CccccceeEEEechHHHHHHH
Confidence 999999888 6777778999999999886532 33 456999999999999998743 347999999999999999877
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
+ +-..|+.|...++++.|.++||||+.. .++++..--..+..+|.-++...+..+...+..... .. .
T Consensus 343 g------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~-~r-----e 410 (691)
T KOG0338|consen 343 G------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP-KR-----E 410 (691)
T ss_pred H------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc-cc-----c
Confidence 6 888899998888999999999999975 456666544444455543333333222211110000 00 0
Q ss_pred cCHHH-HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1559 MTKPT-FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1559 ~~~~~-~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
..++. ...+... .-...+|||+.|+++|..+-- |.-+++..++
T Consensus 411 ~dRea~l~~l~~r-tf~~~~ivFv~tKk~AHRl~I-----------------------------------llGLlgl~ag 454 (691)
T KOG0338|consen 411 GDREAMLASLITR-TFQDRTIVFVRTKKQAHRLRI-----------------------------------LLGLLGLKAG 454 (691)
T ss_pred cccHHHHHHHHHH-hcccceEEEEehHHHHHHHHH-----------------------------------HHHHhhchhh
Confidence 01121 1222222 235679999999999976642 3345677799
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
-+||.|++.+|-..++.|++++++|||||++++||+|++++.+|| ||.+|.++..|+||+||+.|+ +.
T Consensus 455 ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI----------Ny~mP~t~e~Y~HRVGRTARA--GR 522 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI----------NYAMPKTIEHYLHRVGRTARA--GR 522 (691)
T ss_pred hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE----------eccCchhHHHHHHHhhhhhhc--cc
Confidence 999999999999999999999999999999999999999999999 999999999999999999999 68
Q ss_pred ceEEEEEeecCcHHHHHHHH
Q 000129 1718 SGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~l 1737 (2114)
.|.+|.|+.+.+...++.++
T Consensus 523 aGrsVtlvgE~dRkllK~ii 542 (691)
T KOG0338|consen 523 AGRSVTLVGESDRKLLKEII 542 (691)
T ss_pred CcceEEEeccccHHHHHHHH
Confidence 99999999999887777766
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=385.71 Aligned_cols=345 Identities=20% Similarity=0.305 Sum_probs=270.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|.+....++ .||.++|++|+++++.++.+. ++++.|-||+|||++|++|+++.+.+.+.. ...+..+++|+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~----~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFK----PRNGTGVLIICPT 163 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccC----CCCCeeEEEeccc
Confidence 444455555 799999999999999999887 599999999999999999999999876543 2366789999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|+||.|++...++++... ++.|+.+.|+.+..... ...++|+|+||+++ |++.+... ....+++++|+||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchh
Confidence 999999999999999877 99999999998876432 35899999999998 66666554 5667789999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC-ceEeecCC-cccc---cceeEEEeec
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNS-YRPV---PLSQQYIGIQ 708 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~-~~~~f~~~-~rpv---~l~~~~~~~~ 708 (2114)
+.| +|...++.|+.-+ +...|.+++|||.|. .|.+..+..+.. ++|.-... -.+. .+.|-|+..+
T Consensus 242 lLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~~--kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQPS--KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred hhhcccHHHHHHHHHhc-------cccceeeEeeCCCcH--HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999 7888888777654 577889999999984 444444443332 33321111 1111 2444343322
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
.. .++. .+|..+.++....++||||+|...+..+|..|....+.
T Consensus 313 ~~---~~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlp----------------------------- 356 (543)
T KOG0342|consen 313 SD---SRFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLP----------------------------- 356 (543)
T ss_pred cc---chHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCc-----------------------------
Confidence 22 2222 34555556665689999999999999999888743322
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
|...||++++..|..+...|++.+--|||||+++|||+|+|+|++||. |+|++ .+.+|+||+
T Consensus 357 --------v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRv 418 (543)
T KOG0342|consen 357 --------VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRV 418 (543)
T ss_pred --------hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHh
Confidence 334499999999999999999999999999999999999999999999 78777 788999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
||+||.| +.|+++++..+.|+.++..+-
T Consensus 419 GRTaR~g--k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 419 GRTAREG--KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ccccccC--CCceEEEEeChhHHHHHHHHh
Confidence 9999976 889999999999987765543
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=403.65 Aligned_cols=392 Identities=28% Similarity=0.407 Sum_probs=304.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|-|+|+.++.+ +..++.|||+|-|.+|||.+|..+|...+.... ++||..|.|||.+|.++++..-|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-----------RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-----------RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-----------eEEeeChhhhhcchhHHHHHHHh
Confidence 788999999986 577788999999999999999999999987643 89999999999999999998877
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
+ .|+..|||.+.+. .+.-+|+|.|-+..++-+.+ ..++.|.+||+||+|.|.| +||-++|.-+--
T Consensus 197 ~----DVGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 K----DVGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred c----ccceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 6 4888999998875 46788999998854444433 5788999999999999999 899999865432
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEe---------eccCchh--HHH-HHhhH
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~~~~ 721 (2114)
++.++|.|+||||+||+.++|+|+..-...++.+....|||.||++.++. +.++... ..+ .+|.-
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 47899999999999999999999998778889999999999999876442 1222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhccccccccccc
Q 000129 722 ------------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (2114)
Q Consensus 722 ------------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~ 769 (2114)
-+|..+.-.. ...|+|||+-|+++|+..|..+.+..+..+.-.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk----- 414 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK----- 414 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH-----
Confidence 1223222222 246999999999999999998877654322110
Q ss_pred CchhHHHHHhhhccc--------CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEE
Q 000129 770 DSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2114)
Q Consensus 770 ~~~~~~~l~~~~~~~--------~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2114)
..-.++........ +-..+--++.+|||+||+||-+--++.|+-+|..|-++||+||-|++.|+|.||.+|
T Consensus 415 -~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 415 -ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred -HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 01111222111111 123445567899999999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC-cHHHHHHhhc-CCCcccchhhHhhHHHHHHH
Q 000129 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLMN-QQLPIESQFVSKLADQLNAE 919 (2114)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-e~~~~~~ll~-~~~pies~l~~~l~d~l~~e 919 (2114)
|+-....||+.. +.++|--+|+||.|||||.|.|..|.+|++.+.. +.+..+.++. +.-|+-|.|+-.....||.-
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 998888899887 4568999999999999999999999999999885 4445555554 45689999987776777765
Q ss_pred Hhhc
Q 000129 920 IVLG 923 (2114)
Q Consensus 920 i~~~ 923 (2114)
-+.|
T Consensus 572 RvEe 575 (1041)
T KOG0948|consen 572 RVEE 575 (1041)
T ss_pred HHcc
Confidence 4444
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=411.56 Aligned_cols=349 Identities=17% Similarity=0.270 Sum_probs=257.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.+....++.++. ||..|+|+|.++++.++++.+ ++++||||||||++|++|+++.+...... .++||++|+++|+.
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~~~--~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDLNA--CQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCCCC--ceEEEECCCHHHHH
Confidence 455667778877 799999999999999998665 89999999999999999999988653233 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+.+.+. .++...+..+..+.|+.... ...+ ...+|+|+||+++..++++ ....++++++||+||+|++.+..
T Consensus 111 Q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~- 186 (401)
T PTZ00424 111 QIQKVVL-ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRG- 186 (401)
T ss_pred HHHHHHH-HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcc-
Confidence 9999888 46555677888888876543 2222 3459999999998877765 33468899999999999987543
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+...+..+..+++...|++++|||+++. .++...+...+..+...........+...+.......+ .
T Consensus 187 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 254 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEW--K----- 254 (401)
T ss_pred -----hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHH--H-----
Confidence 1222333445557789999999999873 23333222222212111111111112222111111000 0
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
......+... ....++||||+|++.|..++..|.. ...++..+|
T Consensus 255 ~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~-----------------------------------~~~~~~~~h 298 (401)
T PTZ00424 255 FDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHE-----------------------------------RDFTVSCMH 298 (401)
T ss_pred HHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHH-----------------------------------CCCcEEEEe
Confidence 1111222222 3456899999999999888865522 234689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----------~~~~p~s~~~y~qr~GRagR~--g~~G~ 366 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----------NYDLPASPENYIHRIGRSGRF--GRKGV 366 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----------EECCCCCHHHEeecccccccC--CCCce
Confidence 999999999999999999999999999999999999999999 788999999999999999997 67899
Q ss_pred EEEEeecCcHHHHHHHHHhcc
Q 000129 1721 CVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
|++++.+.+.+.++++.+...
T Consensus 367 ~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 367 AINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred EEEEEcHHHHHHHHHHHHHHC
Confidence 999999988888887775443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=418.32 Aligned_cols=363 Identities=20% Similarity=0.256 Sum_probs=259.5
Q ss_pred cCcceEEecCCCCCCCCCCCCCccccCCC--ChhhHhhc-------------CCCCCCCHHHHHHHHHHHcCCCcEEEEc
Q 000129 454 NKGYEEIHVPAMKHKPLDPNEKLIKISEM--PEWAQPAF-------------KGMTQLNRVQSRVYKSALSSADNILLCA 518 (2114)
Q Consensus 454 ~~~~eei~vp~~~~~~~~~~~~l~~i~~l--p~~~~~~f-------------~g~~~l~~iQ~~~i~~~l~~~~nvlv~A 518 (2114)
.+.|..-..|+...+-.+....+..|+.. +.|....| .|+..|+|+|.++|+.++.+.+ +|+++
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrD-VLVim 482 (1195)
T PLN03137 404 VDRYGISSGPVEREPYVPKFIDVTYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYD-VFVLM 482 (1195)
T ss_pred hhhhcccCCCcccCccccccceeeeecCCCCccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCC-EEEEc
Confidence 34555555666544333333344444433 33554333 4899999999999999988765 99999
Q ss_pred cCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----
Q 000129 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---- 594 (2114)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---- 594 (2114)
|||+|||+||++|++.. ...+|||+|+++|+.+++..+.. .|+++..+.|+.....+.
T Consensus 483 PTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr 544 (1195)
T PLN03137 483 PTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQ 544 (1195)
T ss_pred CCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHH
Confidence 99999999999999853 12699999999999988777655 489999999987655432
Q ss_pred -----hccceEEEcCHhHH---HHHHhccCCCcccccccEEEEeccccccc---CCchhHHHHHHHHHHHHhhccccccE
Q 000129 595 -----IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRL 663 (2114)
Q Consensus 595 -----~~~~~IiV~TPek~---d~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~ri 663 (2114)
....+|+|+|||++ +.+.+..........+.+|||||||++.+ ++++.+..+ . .+....+.+++
T Consensus 545 ~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L-~----~Lr~~fp~vPi 619 (1195)
T PLN03137 545 ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL-G----ILKQKFPNIPV 619 (1195)
T ss_pred HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH-H----HHHHhCCCCCe
Confidence 14679999999997 33444332222234589999999999875 355555432 1 11223457889
Q ss_pred EEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000129 664 VGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2114)
Q Consensus 664 v~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (2114)
++||||++. .+++...|+.. . ...|..++....+...++ .+. ...... +...+.....+.+.||||+
T Consensus 620 lALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~y~Vv---~k~-kk~le~----L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLWYSVV---PKT-KKCLED----IDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceEEEEe---ccc-hhHHHH----HHHHHHhcccCCCceeEeC
Confidence 999999874 35666666532 2 334444443333322222 111 111111 2222222223567999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc
Q 000129 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2114)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2114)
||++|+.++..|...+ ..+++|||||++.+|..+++.|.+|.+
T Consensus 689 SRke~E~LAe~L~~~G-------------------------------------ika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 689 SRMDCEKVAERLQEFG-------------------------------------HKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred chhHHHHHHHHHHHCC-------------------------------------CCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999987644 236788999999999999999999999
Q ss_pred eEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC
Q 000129 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2114)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~ 900 (2114)
+|||||++++||||+|+|++||+ |+.+. |+.+|+||+|||||.| ..|.|+++++..+...+..++.+
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhc
Confidence 99999999999999999999999 77776 8889999999999988 67999999998887777777654
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=415.87 Aligned_cols=336 Identities=19% Similarity=0.270 Sum_probs=253.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
||..|+++|.++++.++++. +++++||||||||++|++|+++++.... ..+.+++||++||++||.|+++.+. .+.
T Consensus 20 g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~-~l~ 97 (434)
T PRK11192 20 GYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAR-ELA 97 (434)
T ss_pred CCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHH-HHH
Confidence 79999999999999999865 5999999999999999999999886521 1223599999999999999999998 566
Q ss_pred CCCCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
...++++..++|+...... .....+|+|+||+++..++.. ....++++++||+||||++.+.+ +...+.
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~------~~~~~~ 169 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG------FAQDIE 169 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC------cHHHHH
Confidence 6678999999998765422 234569999999999887765 23357889999999999998654 223333
Q ss_pred HHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCcc-CcEEEEecccccchHHHHHhcCHHHHHHHHH
Q 000129 1493 YIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1569 (2114)
.+....+...|++++|||++. ..++..++...+..+ ...+..+.. .+...+.... ..... ...+..+..
T Consensus 170 ~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~i~~~~~~~~--~~~~k-----~~~l~~l~~ 241 (434)
T PRK11192 170 TIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV-EAEPSRRERKKIHQWYYRAD--DLEHK-----TALLCHLLK 241 (434)
T ss_pred HHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEE-EecCCcccccCceEEEEEeC--CHHHH-----HHHHHHHHh
Confidence 444445667899999999964 457787776554322 222222111 1111111111 11110 111222222
Q ss_pred HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHH
Q 000129 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649 (2114)
Q Consensus 1570 ~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~ 1649 (2114)
. ...+++||||+++..|..++..|.. .+..+.++||+|++.+|.
T Consensus 242 ~-~~~~~~lVF~~s~~~~~~l~~~L~~-----------------------------------~~~~~~~l~g~~~~~~R~ 285 (434)
T PRK11192 242 Q-PEVTRSIVFVRTRERVHELAGWLRK-----------------------------------AGINCCYLEGEMVQAKRN 285 (434)
T ss_pred c-CCCCeEEEEeCChHHHHHHHHHHHh-----------------------------------CCCCEEEecCCCCHHHHH
Confidence 2 2467899999999999999876632 234589999999999999
Q ss_pred HHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1650 ~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.+++.|++|+++|||||+++++|+|+|++.+|| +++.|.+...|+||+|||||. +..|.|++++...+
T Consensus 286 ~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI----------~~d~p~s~~~yiqr~GR~gR~--g~~g~ai~l~~~~d 353 (434)
T PRK11192 286 EAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI----------NFDMPRSADTYLHRIGRTGRA--GRKGTAISLVEAHD 353 (434)
T ss_pred HHHHHHhCCCCcEEEEccccccCccCCCCCEEE----------EECCCCCHHHHhhcccccccC--CCCceEEEEecHHH
Confidence 999999999999999999999999999999999 899999999999999999998 67899999998777
Q ss_pred HHHHHHHHHh
Q 000129 1730 KEYYKKFLRL 1739 (2114)
Q Consensus 1730 ~~~~~~~lRl 1739 (2114)
...+.++.+.
T Consensus 354 ~~~~~~i~~~ 363 (434)
T PRK11192 354 HLLLGKIERY 363 (434)
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=419.99 Aligned_cols=346 Identities=21% Similarity=0.304 Sum_probs=255.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-----CCCceEEEEEcccH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-----~~~~~k~l~I~Ptr 1400 (2114)
|.....+.+.. ||..|||+|.++|+.++++.+ ++++||||||||++|++|+++.+.... ....+++|||+||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 44455555544 799999999999999998655 999999999999999999999886421 11135999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch--hhcc-CCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1401 ~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+||.|+++.+. .|+...++++..++|+...+. ..+. ..+|||+||++|..+++++. ...+..+++|||||||++.
T Consensus 95 eLa~Qi~~~~~-~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAV-KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999998 677667999999999877652 2333 45999999999988876532 2357889999999999987
Q ss_pred CCCCchHHHHHHHHHHHHhhcCC--CceEEEEcccCCCh-hHH-HHHhcCCCCceeecCCCCCccCcEEEEecccccchH
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDL-GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~--~~riV~lSATl~n~-~dl-a~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 1553 (2114)
+.. +...+..+...++. ..|++++|||+++. ..+ ..++... ..+...........+...+.. ....
T Consensus 173 d~g------f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~---~~~~ 242 (572)
T PRK04537 173 DLG------FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYF---PADE 242 (572)
T ss_pred hcc------hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEe---cCHH
Confidence 654 44444455444443 67999999999763 233 3344322 112211111111111111111 1111
Q ss_pred HHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1554 ~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.. ...+..++.. ..+.++||||+|+..|+.++..|.. .+
T Consensus 243 ~k-----~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~-----------------------------------~g 281 (572)
T PRK04537 243 EK-----QTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLER-----------------------------------HG 281 (572)
T ss_pred HH-----HHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------cC
Confidence 11 0111222222 4567899999999999999876632 13
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||.
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VI----------nyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY----------NYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEE----------EcCCCCCHHHHhhhhcccccC
Confidence 4689999999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCCceEEEEEeecCcHHHHHHHHH
Q 000129 1714 LLDNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
+..|.|++|+.+.+...++.+.+
T Consensus 352 --G~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 352 --GEEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred --CCCceEEEEecHHHHHHHHHHHH
Confidence 57899999998766555555543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=423.33 Aligned_cols=336 Identities=21% Similarity=0.291 Sum_probs=253.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+++ .||.+|+|+|.++++.++.+. ++|++||||||||++|.+|+++.+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 566666666 699999999999999988765 5999999999999999999999875431 24589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
++||.|+++.+.++.+.+ ++.+..++|+.+...+. ...++|+|+||+++ +.+.+.. ..++++++|||||||.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998877654 79999999987765432 34689999999997 6665543 4578899999999998
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEeecCCc-ccccceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~-~dva~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (2114)
+.+ .+...++.++.. .+...|++++|||+|+. ..+...+..++ . .+...... ....+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~-~-~i~i~~~~~~~~~i~q~~~~v~~~- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEP-Q-EVRIQSSVTTRPDISQSYWTVWGM- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCC-e-EEEccCccccCCceEEEEEEechh-
Confidence 876 565555555443 46678999999999862 22333222221 1 11111111 112233444433221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.+...+.. ++......++||||+|+..+..++..|...+
T Consensus 231 --~k~~~L~~-----~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---------------------------------- 269 (629)
T PRK11634 231 --RKNEALVR-----FLEAEDFDAAIIFVRTKNATLEVAEALERNG---------------------------------- 269 (629)
T ss_pred --hHHHHHHH-----HHHhcCCCCEEEEeccHHHHHHHHHHHHhCC----------------------------------
Confidence 12222221 2233345789999999999999999887643
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||
T Consensus 270 ---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRt 336 (629)
T PRK11634 270 ---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRT 336 (629)
T ss_pred ---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhccc
Confidence 23566799999999999999999999999999999999999999999999 66654 778899999999
Q ss_pred CCCCCCCceEEEEEcCCCcHHHHH
Q 000129 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
||.| ..|.++++++..+...+.
T Consensus 337 GRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 337 GRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred cCCC--CcceEEEEechHHHHHHH
Confidence 9987 679999999887654443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=415.74 Aligned_cols=346 Identities=21% Similarity=0.323 Sum_probs=266.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~ 1404 (2114)
|....+..+.. ||..|+|||.+++|.++.+.+ +++.|+||||||++|.+|+++.+... ..... .+|+++|||+||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~-~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVERKYV-SALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccccCCC-ceEEECCCHHHHH
Confidence 45566666665 899999999999999999755 99999999999999999999998742 22221 2999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEcCCcccc--hhhccC-CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC
Q 000129 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~-g~~v~~l~G~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (2114)
|+++.+. .++... ++++..++|+.+.. ...++. .+|+|+||+++..++.+ ....+.++.++|+||||.+.+.+
T Consensus 114 Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcCC
Confidence 9999998 688776 78999999998765 233443 79999999999998887 35679999999999999999886
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhc---CCCCceeecCC-CC--CccCcEEEEecccccchHH
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG---ATSHGLFNFPP-GV--RPVPLEIHIQGVDITNFEA 1554 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~---~~~~~~~~f~~-~~--rpv~l~~~~~~~~~~~~~~ 1554 (2114)
+...+..+...++.+.|++++|||+++. +..|.. ..+. .+...+ .. -+..+...+..... ...
T Consensus 191 ------f~~~i~~I~~~~p~~~qtllfSAT~~~~--i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~--~~~ 259 (513)
T COG0513 191 ------FIDDIEKILKALPPDRQTLLFSATMPDD--IRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVES--EEE 259 (513)
T ss_pred ------CHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCC--HHH
Confidence 7777777878888899999999999873 333332 2222 222221 11 11122222221111 110
Q ss_pred HHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000129 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2114)
Q Consensus 1555 ~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2114)
.. .....++.. ....++||||+|+..|..++..|.. .++
T Consensus 260 k~-----~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~-----------------------------------~g~ 298 (513)
T COG0513 260 KL-----ELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRK-----------------------------------RGF 298 (513)
T ss_pred HH-----HHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHH-----------------------------------CCC
Confidence 11 112222222 2344699999999999998866632 345
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
.+..+||+|++++|..+++.|++|..+|||||++++||||+|++.+|| ||+.|.+..+|+||+||+||+
T Consensus 299 ~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi----------nyD~p~~~e~yvHRiGRTgRa- 367 (513)
T COG0513 299 KVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI----------NYDLPLDPEDYVHRIGRTGRA- 367 (513)
T ss_pred eEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE----------EccCCCCHHHheeccCccccC-
Confidence 699999999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCCceEEEEEeecC-cHHHHHHHHHhcc
Q 000129 1715 LDNSGKCVILCHAP-RKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~-~~~~~~~~lRl~~ 1741 (2114)
+..|.++.|+.+. +...+.++.+...
T Consensus 368 -G~~G~ai~fv~~~~e~~~l~~ie~~~~ 394 (513)
T COG0513 368 -GRKGVAISFVTEEEEVKKLKRIEKRLE 394 (513)
T ss_pred -CCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999975 6666666665543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=416.84 Aligned_cols=344 Identities=19% Similarity=0.297 Sum_probs=252.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+..++ .||.+|+++|.++++.++.+. |+|++||||||||++|++|+++.+........ ...+..++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCceEEEEeC
Confidence 4678888777 799999999999999988775 59999999999999999999999876532110 0112468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+++.++.+.+..|+++..++|+.+...+. ...++|+|+||+++..+...+. .+++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987665432 2468999999999844444432 5788999999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCC-cccccceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~ 711 (2114)
+.+ .+.+.+..++..+ . .....|++++|||+++ ...++..+...+ ..+.+... .....+.++++.+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 4544444443322 1 1235689999999874 233333322221 11111211 11122334444333221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
+... ++. +.......++||||++++.++.++..|...+
T Consensus 322 ---k~~~----l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYN-LVTQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1121 222 2223335699999999999999998886532
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+.+. |..+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 23567799999999999999999999999999999999999999999999 66654 788999999999
Q ss_pred CCCCCCCceEEEEEcCCCcHH
Q 000129 872 GRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~ 892 (2114)
||.| ..|.++++.+.++..
T Consensus 427 GR~g--~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDAF 445 (475)
T ss_pred CCCC--CCceEEEEecHHHHH
Confidence 9988 569999998876543
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=373.15 Aligned_cols=347 Identities=20% Similarity=0.299 Sum_probs=268.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|.+|+.+++ .||+.+||+|..+||..+.+.+ |++-||||||||++|++|++..+...... .....+-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 458999998 7999999999999998877655 99999999999999999999999554221 11224679999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCcEEEEEeCCCccChhh----hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|+||.|+.+....++.. .++++..++|+.+.+... ...++|+|+||+++ |++.+.. ....+..+.++|+||||
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~-~~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA-EKLSFRSLEILVLDEAD 167 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh-hhccccccceEEecchH
Confidence 99999999998888776 578999999998776543 35789999999998 5555544 33446789999999999
Q ss_pred cccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC----CcccccceeEEEeec
Q 000129 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----SYRPVPLSQQYIGIQ 708 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~----~~rpv~l~~~~~~~~ 708 (2114)
.|+| ++...+..|++++ +...|.=++|||.. ..+.+..+..+.+++-+-.. +..|..+...|+.+.
T Consensus 168 rLldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~--~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 168 RLLDMGFEASVNTILSFL-------PKQRRTGLFSATQT--QEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred hHhcccHHHHHHHHHHhc-------ccccccccccchhh--HHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9999 7888888888876 45666788999975 45555555444444332211 124656777666554
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
. ..++..+..+ +.....+++|||.+|...++..+..+....
T Consensus 239 a---~eK~~~lv~~-----L~~~~~kK~iVFF~TCasVeYf~~~~~~~l------------------------------- 279 (567)
T KOG0345|consen 239 A---DEKLSQLVHL-----LNNNKDKKCIVFFPTCASVEYFGKLFSRLL------------------------------- 279 (567)
T ss_pred H---HHHHHHHHHH-----HhccccccEEEEecCcchHHHHHHHHHHHh-------------------------------
Confidence 3 2333333222 222346799999999999988887776531
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
.+..+...||.|.+..|..+++.|++..-.||+||+++|||+|+|++++||+ ||||+ .+..|+||+
T Consensus 280 ----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~ 345 (567)
T KOG0345|consen 280 ----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRC 345 (567)
T ss_pred ----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhc
Confidence 1233566799999999999999999988899999999999999999999999 77776 667899999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
||+||.| ..|.++++..+.+.+|..-+
T Consensus 346 GRTaR~g--r~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 346 GRTARAG--REGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred chhhhcc--CccceEEEecccHHHHHHHH
Confidence 9999988 78999999999776655544
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=409.81 Aligned_cols=339 Identities=19% Similarity=0.307 Sum_probs=248.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
++++....+ .||..|+|+|.++++.++++.+ ++++||||||||++|++|+++.+.... .+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDL--------NACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCC--------CCceEEEECCC
Confidence 455555444 5899999999999999887755 899999999999999999998875321 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++|+.|+.+.+.......++.+..++|+....... ...++|+|+||+++ +.+.+.. ..++++++|||||+|++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILDEADEM 182 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEecHHHH
Confidence 99999999999888777788898899987654322 34579999999997 4444432 46789999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe--ecCCcccccceeEEEeeccCch
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY--FDNSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~--f~~~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+ .++..+..++ ....+..|++++|||+|+ ++..+.......+... .........+.+.+..... .
T Consensus 183 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (401)
T PTZ00424 183 LSRGFKGQIYDVF-------KKLPPDVQVALFSATMPN--EILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--E 251 (401)
T ss_pred HhcchHHHHHHHH-------hhCCCCcEEEEEEecCCH--HHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--H
Confidence 76 3433333332 234678999999999986 2322222111111111 1111112222333322211 1
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
......+. .+.......++||||+|++.++.++..|...+
T Consensus 252 ~~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~----------------------------------- 291 (401)
T PTZ00424 252 EWKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD----------------------------------- 291 (401)
T ss_pred HHHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC-----------------------------------
Confidence 11111111 12233346789999999999999988876532
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |..+|+||+||||
T Consensus 292 --~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRag 359 (401)
T PTZ00424 292 --FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSG 359 (401)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeecccccc
Confidence 35788999999999999999999999999999999999999999999998 66654 7889999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
|.| ..|.|++++++++...+..+
T Consensus 360 R~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 360 RFG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred cCC--CCceEEEEEcHHHHHHHHHH
Confidence 987 67999999998877666543
|
|
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=361.99 Aligned_cols=299 Identities=31% Similarity=0.514 Sum_probs=252.4
Q ss_pred CCCCChhhHHHHHhcCcccc-----CCCCCcchHHHHHHHHhhCCccc---CCCCCCCh-HHHHHHHHHHHhcCCCCCC-
Q 000129 1812 TPKTRMKGLLEVLASASEYA-----QLPIRPGEEEVVRRLIHHQRFSF---ENPKFTDP-HVKANALLQAHFSRQQVGG- 1881 (2114)
Q Consensus 1812 ~~~~~~~~iL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~~p~~~---~~~~~~~~-~~K~~lLLqahlsr~~lp~- 1881 (2114)
++++.++.++.+||.+.||. ++.-|..+..+...|.+.++--. ..+....| +.|+.+||+||++|++|++
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 45556788999999999996 57888888888888887765322 22223333 7999999999999999996
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHH
Q 000129 1882 NLKLDQEEVLLSASRLLQAMVDVISSN----------G--WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRC 1949 (2114)
Q Consensus 1882 ~l~~D~~~il~~a~rLl~a~vdi~~~~----------g--~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l 1949 (2114)
.|..|+.+|+.++++|++.||.++... . -+.+.-|||.|++|++||+|...|||+|||||++..++++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 699999999999999999999986432 1 2335569999999999999999999999999999999998
Q ss_pred HcCCCCcccCHHHHhcCCHHHHHHHhc-CChHHHHHHHHHHhcCCceEEEE--EEec---cccccCCCcEEEEEEEEEcC
Q 000129 1950 QENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSF--EVQD---SENVRAGEDITLQVVLERDL 2023 (2114)
Q Consensus 1950 ~~~~~~~i~t~~dl~~~~~~~r~~ll~-~~~~~~~~i~~~~~~~P~i~v~~--~v~~---~~~v~~g~~~~l~v~l~r~~ 2023 (2114)
.++- .|+++.||+.|.++.|..||. +++.++++++.++.+||.|.+++ .|.+ .+.+++|..|||+|+|+|..
T Consensus 168 ~KKr--~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~ 245 (520)
T KOG4434|consen 168 RKKR--KVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSR 245 (520)
T ss_pred hhhc--ccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecc
Confidence 7543 399999999999999999997 99999999999999999987754 4554 35799999999999998820
Q ss_pred ------------------C---CC--------c-----------------------------------------------
Q 000129 2024 ------------------E---GR--------T----------------------------------------------- 2027 (2114)
Q Consensus 2024 ------------------~---~~--------~----------------------------------------------- 2027 (2114)
+ ++ +
T Consensus 246 l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~a 325 (520)
T KOG4434|consen 246 LIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPA 325 (520)
T ss_pred ccChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChh
Confidence 0 00 0
Q ss_pred -----------------------------------------------------------------------ccCccccCC
Q 000129 2028 -----------------------------------------------------------------------EVGPVYSNR 2036 (2114)
Q Consensus 2028 -----------------------------------------------------------------------~~~~v~ap~ 2036 (2114)
...+|||||
T Consensus 326 t~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~py 405 (520)
T KOG4434|consen 326 TEKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPY 405 (520)
T ss_pred hhhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCC
Confidence 023799999
Q ss_pred CCCCccccEEEEEEECCCCeEEEEE--EeecccccEEEEEEEecCCCCceEEEEEEEecCccccCeEEEEEEEeecCC
Q 000129 2037 YPKAKEEGWWLVVGDTKTNQLLAIK--RVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAG 2112 (2114)
Q Consensus 2037 fp~~k~e~Wwlvvgd~~~~~L~~~k--rv~~~~~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~~~~ 2112 (2114)
||.+|.|.||++|.|.++..|+.+- -.++....++.|.|.+|+.||.|+|+|++.||||+|+||..+|+++|.++.
T Consensus 406 FPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk 483 (520)
T KOG4434|consen 406 FPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAK 483 (520)
T ss_pred CcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCC
Confidence 9999999999999999999999974 446778899999999999999999999999999999999999999998764
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=416.08 Aligned_cols=345 Identities=19% Similarity=0.275 Sum_probs=257.3
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|..+.++.+.. ||.+|+|+|.++|+.++.++ ++|+.||||||||++|.+|++..+..... .+++||++||++||.|
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~~--~~~~LIL~PTreLa~Q 89 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPELK--APQILVLAPTRELAVQ 89 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhccC--CCeEEEEeCcHHHHHH
Confidence 44555666654 79999999999999999865 59999999999999999999998865322 3499999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch--hhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+........++++..++|+.+.+. +.+ ..++|||+||+++..++++ ....++++++||+||||.+.+..
T Consensus 90 v~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~g-- 165 (629)
T PRK11634 90 VAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMG-- 165 (629)
T ss_pred HHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcc--
Confidence 9999884333334789999998876552 222 3569999999999877765 34468999999999999887654
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCcc-CcEEEEecccccchHHHHHhcC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+...+..+...++...|+++||||+++. ..++..+...+..+. ........ .+...+.... . ...
T Consensus 166 ----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~-i~~~~~~~~~i~q~~~~v~--~-~~k----- 232 (629)
T PRK11634 166 ----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQSYWTVW--G-MRK----- 232 (629)
T ss_pred ----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEE-ccCccccCCceEEEEEEec--h-hhH-----
Confidence 3444555556667889999999999874 344443333222221 11111111 1111111110 0 000
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
...+..++.. ....++||||+|+..|..++..|.. .++.+..+|
T Consensus 233 ~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~-----------------------------------~g~~~~~lh 276 (629)
T PRK11634 233 NEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALER-----------------------------------NGYNSAALN 276 (629)
T ss_pred HHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHh-----------------------------------CCCCEEEee
Confidence 0112222222 3457899999999999999876632 234688999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 277 gd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----------~~d~P~~~e~yvqRiGRtGRa--Gr~G~ 344 (629)
T PRK11634 277 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----------NYDIPMDSESYVHRIGRTGRA--GRAGR 344 (629)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----------EeCCCCCHHHHHHHhccccCC--CCcce
Confidence 999999999999999999999999999999999999999999 899999999999999999998 67899
Q ss_pred EEEEeecCcHHHHHHHHHh
Q 000129 1721 CVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl 1739 (2114)
|++++.+.+...++.+.+.
T Consensus 345 ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 345 ALLFVENRERRLLRNIERT 363 (629)
T ss_pred EEEEechHHHHHHHHHHHH
Confidence 9999998777666666554
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=410.92 Aligned_cols=352 Identities=22% Similarity=0.329 Sum_probs=283.7
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.++..|. .|..|||.|.+||+.+++ +.|+||+||||||||++|.||++..+.... +.+++.+|||+|.|||.+.
T Consensus 10 ~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 34445444 699999999999999985 677999999999999999999999998852 2345799999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccchh--h-ccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc-CCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK--L-LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~-l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~-~~~g 1481 (2114)
+..++. ..+..+|+.|..-+||++...+ . .+.+||+|+|||.+..++..-+.+..+.++.++||||+|.+. +.+|
T Consensus 89 i~~rL~-~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 89 IRRRLE-EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHH-HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 999998 4555679999999999987633 2 234599999999998877655566789999999999999776 4799
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
..+-.-+.|++.+.. +.|.||+|||+++..++++|++... ...+.-.+..++..+.+.......... ....
T Consensus 168 ~~Lsl~LeRL~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~----~~~~ 239 (814)
T COG1201 168 VQLALSLERLRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD----EELW 239 (814)
T ss_pred hhhhhhHHHHHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----cchh
Confidence 999999999998842 8999999999999999999998875 222322334444444444333222211 2223
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
...+..+...+...+.+|||+|||..|+.++..|... ....|..||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~----------------------------------~~~~i~~HH 285 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKL----------------------------------GPDIIEVHH 285 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHh----------------------------------cCCceeeec
Confidence 3455666666667789999999999999999777432 125699999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|.+|.+.|..+++.|++|+++++|||++++-|||+..+..|| ++..|.+++.++||+||+|+. .+...+
T Consensus 286 gSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI----------q~~SP~sV~r~lQRiGRsgHr-~~~~Sk 354 (814)
T COG1201 286 GSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI----------QLGSPKSVNRFLQRIGRAGHR-LGEVSK 354 (814)
T ss_pred ccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE----------EeCCcHHHHHHhHhccccccc-cCCccc
Confidence 999999999999999999999999999999999999999999 899999999999999999986 377788
Q ss_pred EEEEeecCcHHHHHHHH
Q 000129 1721 CVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~l 1737 (2114)
+++++.+ ..+.++...
T Consensus 355 g~ii~~~-r~dllE~~v 370 (814)
T COG1201 355 GIIIAED-RDDLLECLV 370 (814)
T ss_pred EEEEecC-HHHHHHHHH
Confidence 8888877 555554443
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=364.83 Aligned_cols=343 Identities=19% Similarity=0.308 Sum_probs=268.2
Q ss_pred cCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 000129 479 ISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (2114)
Q Consensus 479 i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i 556 (2114)
...|.+|+-+.+ .|++.+||+|..|||.+++|.+ +|-||.||||||.+|.+||++.+..++ .+.-++++
T Consensus 11 ~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP--------~giFalvl 81 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDP--------YGIFALVL 81 (442)
T ss_pred hcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCC--------CcceEEEe
Confidence 345688988877 6899999999999999999977 999999999999999999999998874 34579999
Q ss_pred cccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCC-CcccccccEEEEec
Q 000129 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDE 631 (2114)
Q Consensus 557 aP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~-~~~l~~v~liIiDE 631 (2114)
+|||+||-|+.+.|....+.+++++..++|+++.-.+. ...+|++|+|||++ +.+...... ...+++++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999998889999999999998754432 36899999999998 555444222 34578899999999
Q ss_pred cccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcc----cccceeEEEe
Q 000129 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR----PVPLSQQYIG 706 (2114)
Q Consensus 632 aH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~r----pv~l~~~~~~ 706 (2114)
|+.+.+ .+...++.+.+. .+...|.++||||+.+ .+....+.....+..++....- +-.|.+.|+.
T Consensus 162 ADrvL~~~f~d~L~~i~e~-------lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEEC-------LPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred hhhhhccchhhHHhhhhcc-------CCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhheee
Confidence 999987 566666655443 4566799999999973 4555555554443333333322 3346666665
Q ss_pred eccCchhHHHHHhhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 707 IQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
+...-. +-.+|..+.... ..+.++||+++..+|+.++..|+.....
T Consensus 233 ~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r------------------------- 280 (442)
T KOG0340|consen 233 VSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR------------------------- 280 (442)
T ss_pred cchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee-------------------------
Confidence 443321 111222232222 3679999999999999999988765432
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
++.+|+.|++.+|...+.+|+++.++|||||++++||+|+|.|.+|||++.|-| +.+|
T Consensus 281 ------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~----------P~~y 338 (442)
T KOG0340|consen 281 ------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD----------PKDY 338 (442)
T ss_pred ------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC----------HHHH
Confidence 455699999999999999999999999999999999999999999999555554 4579
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+||+||+.|+| ..|.++-+.++.+.+.+.
T Consensus 339 iHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 339 IHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 99999999998 789999999887766554
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=362.68 Aligned_cols=361 Identities=18% Similarity=0.274 Sum_probs=273.2
Q ss_pred CCCCccCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCc
Q 000129 1311 PPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGV 1390 (2114)
Q Consensus 1311 ~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~ 1390 (2114)
..++..|.+.||.+..|+. -|++.+||+|..|++.+++|.+ +|-||.||||||.+|.+|+++.|..+. .|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~-------l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP-~g- 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKA-------LGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDP-YG- 75 (442)
T ss_pred cCchhhcCccHHHHHHHHH-------hcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCC-Cc-
Confidence 3455566666666555543 2699999999999999999777 999999999999999999999999853 33
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcc--cccccce
Q 000129 1391 MRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQ--RKYVQQV 1465 (2114)
Q Consensus 1391 ~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~--~~~l~~v 1465 (2114)
.-++++.|||+||.|+.+.|. .+++.+++++..+.|+.+.- .....+.|++|+|||++..+++.... ...++++
T Consensus 76 iFalvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred ceEEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhce
Confidence 389999999999999999999 78988999999999987753 44556779999999999888876322 2258899
Q ss_pred eEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCc--eeecCCCCCccCcEEE
Q 000129 1466 SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG--LFNFPPGVRPVPLEIH 1543 (2114)
Q Consensus 1466 ~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~--~~~f~~~~rpv~l~~~ 1543 (2114)
.++|+|||+.+.+.. +-..+.-+...++.+.|.++||||+.+. +.+.+++.... .|.+ .....++..-.
T Consensus 155 kflVlDEADrvL~~~------f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~-e~~~~vstvet 225 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGC------FPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFEL-EVIDGVSTVET 225 (442)
T ss_pred eeEEecchhhhhccc------hhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEE-eccCCCCchhh
Confidence 999999999887653 3444555556667788999999999754 45555554322 1111 11111111000
Q ss_pred EecccccchHHHHHhc---CHHH--HHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1544 IQGVDITNFEARMQAM---TKPT--FTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1544 ~~~~~~~~~~~~~~~~---~~~~--~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
........ .+.+ +..+...- .+.+.++||+++.+.|+.++..|
T Consensus 226 --------L~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l----------------------- 274 (442)
T KOG0340|consen 226 --------LYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL----------------------- 274 (442)
T ss_pred --------hhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH-----------------------
Confidence 00000001 1112 22232221 14778999999999999888655
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~ 1697 (2114)
+.+...++.+|+.|++.+|...+.+|+++.++|||||++++||+|+|.+.+|| |++.|
T Consensus 275 ------------~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVv----------N~diP 332 (442)
T KOG0340|consen 275 ------------KNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVV----------NHDIP 332 (442)
T ss_pred ------------hhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEE----------ecCCC
Confidence 22456789999999999999999999999999999999999999999999999 99999
Q ss_pred CCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH-HhccCCCCc
Q 000129 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-RLTQNPNYY 1746 (2114)
Q Consensus 1698 ~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l-Rl~~nP~~y 1746 (2114)
..+.+|+||+||+.|+ ++.|.++.++...+.+.+..+. ++.+.-.-|
T Consensus 333 r~P~~yiHRvGRtARA--GR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 333 RDPKDYIHRVGRTARA--GRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred CCHHHHHHhhcchhcc--cCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 9999999999999999 6899999999988888777666 333333333
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=408.61 Aligned_cols=349 Identities=20% Similarity=0.274 Sum_probs=256.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-----CceEEEEEcccH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLE 1400 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-----~~~k~l~I~Ptr 1400 (2114)
|.......+.. ||..|+++|.++++.+++++ |++++||||||||++|++|+++.+...... +.+++|||+||+
T Consensus 94 l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptr 172 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTR 172 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcH
Confidence 44455555555 79999999999999999865 599999999999999999999988763211 135899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1401 ~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
+||.|+++.++ .+.+..++++..++|+.+.+ .+.+ ..++|+|+||+++..+..+| ...++++++|||||+|.+
T Consensus 173 eLa~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 173 ELVVQIAKDAA-ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADRM 249 (475)
T ss_pred HHHHHHHHHHH-HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHHH
Confidence 99999999998 56666789999999986544 2222 34699999999998887765 346899999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhhcC--CCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCC-CccCcEEEEecccccch
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~--~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~~ 1552 (2114)
.+.. +..+++.+..+.+ ...|++++|||+++ ...++.++...+. .+.+.+.. ....+..++.......
T Consensus 250 ~~~~------~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~- 321 (475)
T PRK01297 250 LDMG------FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENVASDTVEQHVYAVAGSD- 321 (475)
T ss_pred Hhcc------cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcCCCCcccEEEEEecchh-
Confidence 7654 4455555555543 35699999999865 3445544433321 22222111 1111222222111111
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
. ......+... ....++||||++++.|+.++..|.. .
T Consensus 322 --k-----~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~-----------------------------------~ 358 (475)
T PRK01297 322 --K-----YKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVK-----------------------------------D 358 (475)
T ss_pred --H-----HHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------c
Confidence 0 0111122222 3456899999999999888866522 2
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+..+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI----------~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI----------NFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE----------EeCCCCCHHHHHHhhCccCC
Confidence 34578899999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
. +..|.++++..+.+..++..+.+++.-
T Consensus 429 ~--g~~g~~i~~~~~~d~~~~~~~~~~~~~ 456 (475)
T PRK01297 429 A--GASGVSISFAGEDDAFQLPEIEELLGR 456 (475)
T ss_pred C--CCCceEEEEecHHHHHHHHHHHHHhCC
Confidence 8 578999999987765555555554443
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=363.18 Aligned_cols=335 Identities=21% Similarity=0.314 Sum_probs=272.0
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
++.+...| .||+.|+|+|.++||.++.+.+ +|+-|..|+|||.+|.+|++..+.... ...++++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecch
Confidence 44555666 7999999999999999988765 999999999999999999999886542 4568999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCccChhhh---ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc
Q 000129 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
||-|..+.+.++.+.+|++|...+|++++.+... ...+++|+||++. |...+.- ..+++..++|+|||+.|++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV---a~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV---ADLSDCVILVMDEADKLLS 241 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc---ccchhceEEEechhhhhhc
Confidence 9999999999999999999999999999877543 5779999999997 5554443 4678899999999999998
Q ss_pred -CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEeecCCcccccceeEEEeeccCchhHH
Q 000129 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (2114)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~-~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (2114)
++++.++.++..+ ++..|++++|||.|. .+..|....+.++ ....-....+..+.+.|-.+.+.. +
T Consensus 242 ~~F~~~~e~li~~l-------P~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q---K 309 (459)
T KOG0326|consen 242 VDFQPIVEKLISFL-------PKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ---K 309 (459)
T ss_pred hhhhhHHHHHHHhC-------CccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh---h
Confidence 7999998887754 778999999999994 5777776654433 233344445555665554444332 2
Q ss_pred HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccC
Q 000129 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2114)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (2114)
.. |...+.....-+|.||||||.+.++-+|+.+.+.+.++-
T Consensus 310 vh-----CLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscy---------------------------------- 350 (459)
T KOG0326|consen 310 VH-----CLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCY---------------------------------- 350 (459)
T ss_pred hh-----hHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhh----------------------------------
Confidence 22 233334445568999999999999999999988776543
Q ss_pred ceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
+.||.|.+++|+.|+..|++|.++.||||+.+.||||+++++|||| ||.++ +...|+||+||+||-|
T Consensus 351 ---yiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 351 ---YIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG 417 (459)
T ss_pred ---HHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC
Confidence 4499999999999999999999999999999999999999999999 77665 6778999999999966
Q ss_pred CCCceEEEEEcCCCcHHHHH
Q 000129 876 YDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 876 ~d~~G~~iil~~~~e~~~~~ 895 (2114)
..|.+|-+.+.++...+.
T Consensus 418 --hlGlAInLityedrf~L~ 435 (459)
T KOG0326|consen 418 --HLGLAINLITYEDRFNLY 435 (459)
T ss_pred --CcceEEEEEehhhhhhHH
Confidence 889999988876654433
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=374.58 Aligned_cols=369 Identities=21% Similarity=0.284 Sum_probs=270.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|..||.+|+++||.++++++ ++|-|+||||||++|++|+++.+..... ..-+.+++-+|||+|||+||.|+++.+
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALVivPTREL~~Q~y~~~ 231 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIVPTRELALQIYETV 231 (708)
T ss_pred hccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEechHHHHHHHHHHH
Confidence 5899999999999999999766 9999999999999999999999876532 122456789999999999999999999
Q ss_pred HHhhccCCc-EEEEEeCCCccCh---hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHH
Q 000129 571 SNRLQMYDV-KVRELSGDQTLTR---QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2114)
Q Consensus 571 ~~~~~~~gi-~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (2114)
++++.++.. .-+.+.|+..... +...+.+|+|+||+++ |.|..... ..++++++||+||+|.|.+ +++..+.
T Consensus 232 qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 232 QKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHH
Confidence 999987653 3356666654332 2357899999999997 77765443 5677899999999999999 7888898
Q ss_pred HHHHHHHHHHhh------ccccccEEEEccccCChHHHHHHHhccccCceEee---------------------------
Q 000129 645 SIVARTVRQIET------TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--------------------------- 691 (2114)
Q Consensus 645 ~iv~rl~~~~~~------~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f--------------------------- 691 (2114)
.|+..+-.+-.. .++..+-+++||||. +.|.+.-...+.++++.-
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt--d~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l 387 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLT--DGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKL 387 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhH--HHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccc
Confidence 888766331111 122467899999997 345554444433333322
Q ss_pred cCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc
Q 000129 692 DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (2114)
Q Consensus 692 ~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~ 771 (2114)
+..--|-.|.++|..++.+ -++..+..++.+.+. .....++|||+++.+.++.-+..|.........-
T Consensus 388 ~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~-------- 455 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG-------- 455 (708)
T ss_pred ccccCcHHhhhceEecCCc---hhHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhccccc--------
Confidence 1112244455555555443 234444444444332 2234589999999999999888887654321000
Q ss_pred hhHHHHHhhhcccCcchhhh-hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceecc
Q 000129 772 VSREILQSHTDMVKSNDLKD-LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850 (2114)
Q Consensus 772 ~~~~~l~~~~~~~~~~~L~~-ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd 850 (2114)
......+..+.. .+...+.-+||+|++++|..+++.|+...-.||.||++++||+|+|.|++||. ||
T Consensus 456 --------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd 523 (708)
T KOG0348|consen 456 --------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YD 523 (708)
T ss_pred --------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eC
Confidence 000111111222 22344778899999999999999999998899999999999999999999999 88
Q ss_pred CCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhc
Q 000129 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 851 ~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~ 899 (2114)
++. +..+|+||+||+.|.| ..|.+++|..+.|.+ |.+++.
T Consensus 524 ~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~ 563 (708)
T KOG0348|consen 524 PPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLK 563 (708)
T ss_pred CCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHH
Confidence 876 8999999999999998 779999999998888 444443
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=378.30 Aligned_cols=345 Identities=20% Similarity=0.283 Sum_probs=277.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|..++.||+++|+.++.|.+ +|..|-||||||++|++|+++.+...... ..++.-+|+|+|||+||.|+++.+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCC----CCCCceeEEecchHHHHHHHHHHH
Confidence 5799999999999999999977 99999999999999999999999876543 235678999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccCh--hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~--~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (2114)
.+..+..+++.+.+.|+..... ..+.+.+|+||||+++ .++-.... ....++.++|+|||+++.| ++..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 9999999999999999987654 3467899999999996 44443332 4557789999999999999 688899988
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC----CcccccceeEEEeeccCchhHHHHHhhHH
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----SYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~----~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
+..+ +...|.+++|||-. ..++...+.....+.++-.. .-.|..|.|.|+.+...... ..
T Consensus 240 i~~l-------P~~RQTLLFSATqt--~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki-------~~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQT--KSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKI-------DM 303 (758)
T ss_pred HHhC-------Chhheeeeeecccc--hhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHH-------HH
Confidence 8764 67889999999955 45666666555555443222 34688899988877655432 23
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
+|..+..+. ..++|||++|.+++..++..++...... .+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~-----------------------------------~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGI-----------------------------------PLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCC-----------------------------------ceeeecc
Confidence 455454444 6689999999999999999888753221 2345699
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
+|++..|..|...|-...--||+||++++||+|+|+|++||..++|- .+.+|+||+||+.| ++..|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe----------dv~tYIHRvGRtAR--~~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE----------DVDTYIHRVGRTAR--YKERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch----------hHHHHHHHhhhhhc--ccCCCce
Confidence 99999999999999998899999999999999999999999955444 46679999999999 4588999
Q ss_pred EEEcCCCcHHHHHHhhcCC-Ccccc
Q 000129 883 IIITGHSELRYYLSLMNQQ-LPIES 906 (2114)
Q Consensus 883 iil~~~~e~~~~~~ll~~~-~pies 906 (2114)
+++..+++.+.+...++.. +|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 9999999977776655544 66543
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=367.10 Aligned_cols=355 Identities=19% Similarity=0.261 Sum_probs=267.1
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q 1405 (2114)
...+.+-. ||..+||+|..++|.++.+.| |++-||||||||++|++|+++.+.... +.+.+-+|+|+|||+||.|
T Consensus 16 ~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 16 WLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 34444433 799999999999999998666 999999999999999999999995432 2223578999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+.+...........+++..++|+.+.+ .+.+ +.++|+|||||++..++++-.....++++.++|+||||++.+.+
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg- 173 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG- 173 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc-
Confidence 999988544454688899999986654 2322 35589999999999999885555567799999999999999887
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCC--CccCcEEEEecccccchHHHHHh
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
+...++.|.+.+++..|.=++|||.... .+++..--.++..+-.-..+. -|..+...+....... .
T Consensus 174 -----Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e--K---- 242 (567)
T KOG0345|consen 174 -----FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE--K---- 242 (567)
T ss_pred -----HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH--H----
Confidence 8889999999999999999999998653 244332211111111101111 1222222211111000 0
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
....+. ++.. ...+++|||.+|...++..+..+... .....+..
T Consensus 243 -~~~lv~-~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~---------------------------------l~~~~i~~ 286 (567)
T KOG0345|consen 243 -LSQLVH-LLNN-NKDKKCIVFFPTCASVEYFGKLFSRL---------------------------------LKKREIFS 286 (567)
T ss_pred -HHHHHH-HHhc-cccccEEEEecCcchHHHHHHHHHHH---------------------------------hCCCcEEE
Confidence 001111 1222 35688999999998887766544221 12345889
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+||.|++..|..+++.|.+..-.||+||++++||+|+|++.+|| +++.|.....|+||+||+||. +..
T Consensus 287 iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv----------Q~DpP~~~~~FvHR~GRTaR~--gr~ 354 (567)
T KOG0345|consen 287 IHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV----------QFDPPKDPSSFVHRCGRTARA--GRE 354 (567)
T ss_pred ecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE----------ecCCCCChhHHHhhcchhhhc--cCc
Confidence 99999999999999999998889999999999999999999999 899999999999999999998 789
Q ss_pred eEEEEEeecCcHHHHHHHHHhccCCCCc
Q 000129 1719 GKCVILCHAPRKEYYKKFLRLTQNPNYY 1746 (2114)
Q Consensus 1719 G~~iil~~~~~~~~~~~~lRl~~nP~~y 1746 (2114)
|.|++|..+ +.+.|-.|+|+..-|..-
T Consensus 355 G~Aivfl~p-~E~aYveFl~i~~~v~le 381 (567)
T KOG0345|consen 355 GNAIVFLNP-REEAYVEFLRIKGKVELE 381 (567)
T ss_pred cceEEEecc-cHHHHHHHHHhcCccchh
Confidence 999999998 667788899888767544
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=433.46 Aligned_cols=350 Identities=22% Similarity=0.340 Sum_probs=252.8
Q ss_pred EEecCCCchHHHHHHHHHHHhhhcc--------CCCceEEEEEcccHHHHHHHHHHHHHH----------hcC-CCCcEE
Q 000129 1362 VAAPTGSGKTICSEFAILRNHQKAS--------ETGVMRAVYIAPLEALAKERYRDWEIK----------FGQ-GLGMRV 1422 (2114)
Q Consensus 1362 i~ApTGSGKTl~~~l~il~~l~~~~--------~~~~~k~l~I~Ptr~La~q~~~~~~~~----------f~~-~~g~~v 1422 (2114)
|+||||||||+||.+|++..+.... ...++++|||+|+|+|+.|+++.++.. ++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998887531 112459999999999999999988742 222 247899
Q ss_pred EEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhc
Q 000129 1423 VELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1423 ~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~ 1498 (2114)
...+||++.+.+ .+ +.++|+|+|||+|..++.+ +.+..++++++|||||+|.+.+ .+|..++..++|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999987753 33 3569999999999988764 2355799999999999998886 48999999999999874
Q ss_pred CCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEecccccchH------------HHHHhcCHHHHH
Q 000129 1499 ENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFE------------ARMQAMTKPTFT 1565 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~~~~------------~~~~~~~~~~~~ 1565 (2114)
+.+.|+|++|||++|.+++++|++... ..+++ .+..++.++.+.+...+..... .+...+....+.
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 567899999999999999999998753 33443 5666777776554332211110 001111222233
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh---ccceEeecCC
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL---RHGVGYLHEG 1642 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l---~~gV~~~H~~ 1642 (2114)
.+...+..++++|||||||+.|+.++..|.......... . ..............+....... ...+.+|||+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-S----PSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-c----ccccchhhhhhhccccchhccccccceeeeecccc
Confidence 444444567899999999999999999996643211000 0 0000000000000111111111 1236899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++++|..+++.|++|++++||||+++++|||++++.+|| +++.|.++.+|+||+|||||. .+..++++
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI----------q~gsP~sVas~LQRiGRAGR~-~gg~s~gl 379 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI----------QVATPLSVASGLQRIGRAGHQ-VGGVSKGL 379 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE----------EeCCCCCHHHHHHHhCCCCCC-CCCccEEE
Confidence 9999999999999999999999999999999999999999 888999999999999999997 46677777
Q ss_pred EEeecCcHHHH
Q 000129 1723 ILCHAPRKEYY 1733 (2114)
Q Consensus 1723 il~~~~~~~~~ 1733 (2114)
++.. +..++.
T Consensus 380 i~p~-~r~dll 389 (1490)
T PRK09751 380 FFPR-TRRDLV 389 (1490)
T ss_pred EEeC-cHHHHH
Confidence 5554 344433
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=372.77 Aligned_cols=348 Identities=18% Similarity=0.197 Sum_probs=270.8
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+.++.. ||.++|++|...++.++.+.+ +++.|.||||||++|++|+++.+.... +..+..+++|+|||+||.|+
T Consensus 92 ~t~kAi~~~GF~~MT~VQ~~ti~pll~gkD-vl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~ 170 (543)
T KOG0342|consen 92 LTLKAIKEMGFETMTPVQQKTIPPLLEGKD-VLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQI 170 (543)
T ss_pred HHHHHHHhcCccchhHHHHhhcCccCCCcc-ceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHH
Confidence 34455554 899999999999999999775 999999999999999999999988753 23346899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+.+.++.+....+..|+.+.|+.... .+....++|+|+||++|..++.+... ..+++++++|+||||++.+.+
T Consensus 171 ~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~G--- 246 (543)
T KOG0342|consen 171 FAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIG--- 246 (543)
T ss_pred HHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcc---
Confidence 99999666544488999999988764 23334569999999999998887443 456778999999999999877
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
+-..|..|...++...|..++|||.+. .++++.-.-......++......+...+-.-+++-......++ -.
T Consensus 247 ---F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f----~l 319 (543)
T KOG0342|consen 247 ---FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF----SL 319 (543)
T ss_pred ---cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH----HH
Confidence 667777777788899999999999976 4566664443334444444444443333222322222211211 12
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
++..+.++ ....++||||+|...+...+..|. .+...|.-+||+
T Consensus 320 l~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~-----------------------------------~~dlpv~eiHgk 363 (543)
T KOG0342|consen 320 LYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLN-----------------------------------YIDLPVLEIHGK 363 (543)
T ss_pred HHHHHHHh-cCCceEEEEechhhHHHHHHHHHh-----------------------------------hcCCchhhhhcC
Confidence 34444444 334889999999999888775542 244568889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
+++..|..+...|++.+.-|||||+++|||+|+|++.+|| +++.|-...+|+||+||+||. +..|+++
T Consensus 364 ~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv----------Q~~~P~d~~~YIHRvGRTaR~--gk~G~al 431 (543)
T KOG0342|consen 364 QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV----------QYDPPSDPEQYIHRVGRTARE--GKEGKAL 431 (543)
T ss_pred CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE----------EeCCCCCHHHHHHHhcccccc--CCCceEE
Confidence 9999999999999999999999999999999999999999 899999999999999999996 7999999
Q ss_pred EEeecCcHHHHHHHH
Q 000129 1723 ILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1723 il~~~~~~~~~~~~l 1737 (2114)
++..+.+..|+..+-
T Consensus 432 L~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 432 LLLAPWELGFLRYLK 446 (543)
T ss_pred EEeChhHHHHHHHHh
Confidence 999887766655444
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=348.83 Aligned_cols=335 Identities=20% Similarity=0.320 Sum_probs=260.3
Q ss_pred hhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 485 WAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 485 ~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
.++..+ -||++|+.||+.|++.++.+++ ++++|..|+|||..|.+.+++.+.-.. ...++++++|||+||
T Consensus 38 lLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~--------r~tQ~lilsPTRELa 108 (400)
T KOG0328|consen 38 LLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISV--------RETQALILSPTRELA 108 (400)
T ss_pred HHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccc--------ceeeEEEecChHHHH
Confidence 345555 6999999999999999998866 999999999999999998888775432 346899999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
.|+.+.+..+..++|+.+..+.|+.+..... -.+.+++.+||++. |++.|.. ...+.++++|+||++.|++ +
T Consensus 109 ~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 109 VQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEEeccHHHHHHhh
Confidence 9999999999999999999999998866543 24789999999996 8887765 4567899999999999887 5
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE--eecCCcccccceeEEEeeccCchhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF--YFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~--~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
++..+-.+.. ..+++.|++++|||+| .++.+........++- .-.....--.+.+.|+.+. +...++
T Consensus 186 fk~Qiydiyr-------~lp~~~Qvv~~SATlp--~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKf 254 (400)
T KOG0328|consen 186 FKEQIYDIYR-------YLPPGAQVVLVSATLP--HEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKF 254 (400)
T ss_pred HHHHHHHHHH-------hCCCCceEEEEeccCc--HHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhH
Confidence 6655554443 3588999999999998 4444433332223322 2222221222455555443 233444
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+.+ +|+ ...-.|++|||||++.+..+.+.+++..+ -
T Consensus 255 dtLcd-LYd----~LtItQavIFcnTk~kVdwLtekm~~~nf-------------------------------------t 292 (400)
T KOG0328|consen 255 DTLCD-LYD----TLTITQAVIFCNTKRKVDWLTEKMREANF-------------------------------------T 292 (400)
T ss_pred hHHHH-Hhh----hhehheEEEEecccchhhHHHHHHHhhCc-------------------------------------e
Confidence 44443 233 33457999999999999998888876532 2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
|...||.|++++|..+++.|++|+-+||++|++.|||+|+|.+.+||| ||.|. ....|+||+||+||-|
T Consensus 293 VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG- 361 (400)
T KOG0328|consen 293 VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG- 361 (400)
T ss_pred eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC-
Confidence 556699999999999999999999999999999999999999999999 55554 4467999999999965
Q ss_pred CCceEEEEEcCCCcHHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|.+|-+...++...|++
T Consensus 362 -RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 -RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred -CcceEEEEecHHHHHHHHH
Confidence 8999999999988776665
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=367.11 Aligned_cols=377 Identities=20% Similarity=0.285 Sum_probs=280.1
Q ss_pred cccCcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCC
Q 000129 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368 (2114)
Q Consensus 1290 wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGS 1368 (2114)
|-..-....|++++-.+|.. +..+.-+.++...+.-+.. ||..|+|||.+|++..++.++ +|..|.|||
T Consensus 224 wri~redynis~kg~~lpnp---------lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD-~igvaETgs 293 (673)
T KOG0333|consen 224 WRIFREDYNISIKGGRLPNP---------LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD-PIGVAETGS 293 (673)
T ss_pred ceeeecceeeeecCCCCCcc---------ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC-eeeEEeccC
Confidence 66666666777777777752 2233334455555555544 799999999999998888555 999999999
Q ss_pred chHHHHHHHHHHHhhhcc-------CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh---hccC
Q 000129 1369 GKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEK 1438 (2114)
Q Consensus 1369 GKTl~~~l~il~~l~~~~-------~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~---~l~~ 1438 (2114)
|||.+|++|++-.+.... ...++.+++++|||+|+.|+..+-. +|++.+|++++.+.|+.+.+.+ .-..
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhcc
Confidence 999999999998776532 1124699999999999999999988 7999999999999999988754 4456
Q ss_pred CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-CchHHHHHHHHHHH------------------HhhcC
Q 000129 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYI------------------ASQVE 1499 (2114)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-g~~le~i~srl~~i------------------~~~~~ 1499 (2114)
++|+|+||++++..+-+ ....++++..||+|||+.+.+.+ -+.+..++..|-.- .....
T Consensus 373 ceiviatPgrLid~Len--r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred ceeeecCchHHHHHHHH--HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 69999999999877765 34568889999999999887753 45555555444211 00000
Q ss_pred CCceEEEEcccCCCh-hHHHH-HhcCCCCceeecCCCCCccCcE-EEEecccccchHHHHHhcCHHHHHHHHHHhcCCCC
Q 000129 1500 NKIRIVALSTSLANA-KDLGE-WIGATSHGLFNFPPGVRPVPLE-IHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~-~dla~-wl~~~~~~~~~f~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 1576 (2114)
.-.|.+.||||++.+ ..++. ||..+. +.......+|.|.- ..+.-..... . ...+..++.. ....|
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv--~vtig~~gk~~~rveQ~v~m~~ed~--k------~kkL~eil~~-~~~pp 519 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPV--VVTIGSAGKPTPRVEQKVEMVSEDE--K------RKKLIEILES-NFDPP 519 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCe--EEEeccCCCCccchheEEEEecchH--H------HHHHHHHHHh-CCCCC
Confidence 116889999999874 34554 444332 22223333444432 1221111110 0 1112233333 24678
Q ss_pred EEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 000129 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656 (2114)
Q Consensus 1577 ~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~ 1656 (2114)
+|||+|+++.|..+|..|- ..++.+..+|||-++++|..+++.|+
T Consensus 520 iIIFvN~kk~~d~lAk~Le-----------------------------------K~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILE-----------------------------------KAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred EEEEEechhhHHHHHHHHh-----------------------------------hccceEEEeeCCccHHHHHHHHHHHH
Confidence 9999999999999997762 24567999999999999999999999
Q ss_pred cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHH
Q 000129 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF 1736 (2114)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~ 1736 (2114)
+|..+|||||++++||||+|+|.+|| +|+++.++.+|+||+||+||+ +..|.|+.|++..+.+.|..+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVi----------nydmaksieDYtHRIGRTgRA--Gk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVI----------NYDMAKSIEDYTHRIGRTGRA--GKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceee----------ecchhhhHHHHHHHhcccccc--ccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999 999999999999999999999 789999999999887765555
Q ss_pred H
Q 000129 1737 L 1737 (2114)
Q Consensus 1737 l 1737 (2114)
.
T Consensus 633 k 633 (673)
T KOG0333|consen 633 K 633 (673)
T ss_pred H
Confidence 4
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=390.03 Aligned_cols=363 Identities=28% Similarity=0.477 Sum_probs=288.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+-++|++||.++.. +++|+|+|+|.+|||++|+.||.-.-.. .. |++|.+|.++|.+|.+++|+..|+.
T Consensus 297 elD~FQk~Ai~~ler-g~SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF~D---- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLER-GDSVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETFGD---- 366 (1248)
T ss_pred CccHHHHHHHHHHHc-CCeEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhccc----
Confidence 688999999999876 5569999999999999999998754433 34 9999999999999999999999985
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~ 1499 (2114)
|+.+|||...+ ..+.++|+|.|.|-+++-+ ....++++.+||+||+|.+.+ +||.+||.++- .++
T Consensus 367 -vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP 432 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLP 432 (1248)
T ss_pred -cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeee-------ecc
Confidence 45899998766 5678999999999888766 455789999999999999998 79999998873 248
Q ss_pred CCceEEEEcccCCChhHHHHHhcCCCC-ceeecCCCCCccCcEEEEecccc-------------cchHHHHHh-------
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDI-------------TNFEARMQA------- 1558 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~~~-~~~~f~~~~rpv~l~~~~~~~~~-------------~~~~~~~~~------- 1558 (2114)
.++++|+||||+||..+||+|+|.... .++..+...||||++.++..-.. ..+......
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 899999999999999999999998764 46777778999999987632200 000000000
Q ss_pred ----------------------------------c-CH--HHHHHHHHHhcC--CCCEEEEeCChHHHHHHHHHHHHhhc
Q 000129 1559 ----------------------------------M-TK--PTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSS 1599 (2114)
Q Consensus 1559 ----------------------------------~-~~--~~~~~i~~~l~~--~~~~LVFv~sr~~a~~la~~L~~~~~ 1599 (2114)
. .+ +.+..+..++.. --|++|||-||+.|...|..|...--
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0 00 234455555433 35899999999999999998865433
Q ss_pred cCCcccccccCCCcccchhhHh----hhhH--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 000129 1600 MDGDQKSAFLLWPAEEVEPFID----NIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667 (2114)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~----~i~d--------~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~ 1667 (2114)
.++.. ..++.-+++ ++++ ..+.+.+..|+++||||+-+--+..|+.+|..|-++||+||.
T Consensus 593 ~~~~E--------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 593 TDSKE--------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred ccchh--------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 22222 223332222 2221 346678889999999999999999999999999999999999
Q ss_pred ccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC--cHHHHHHHH
Q 000129 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP--RKEYYKKFL 1737 (2114)
Q Consensus 1668 ~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~--~~~~~~~~l 1737 (2114)
++|+|||.|+.+||+.+.+..||.+.+ ...+.+|.||+|||||.|.|..|.++++|... ....+++++
T Consensus 665 TFAMGVNMPARtvVF~Sl~KhDG~efR--~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li 734 (1248)
T KOG0947|consen 665 TFAMGVNMPARTVVFSSLRKHDGNEFR--ELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLI 734 (1248)
T ss_pred hhhhhcCCCceeEEeeehhhccCccee--ecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHh
Confidence 999999999999999999999999754 45789999999999999999999999999875 445555555
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=406.04 Aligned_cols=410 Identities=28% Similarity=0.396 Sum_probs=308.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|-++|++++.. +..+++|++|||||||||.++..+|...+..+. +++|++|.|||.+|.+++|..++
T Consensus 119 ~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-----------rviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-----------RVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-----------ceEeccchhhhhhhHHHHHHHHh
Confidence 789999999975 566778999999999999999999998887542 69999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
+...-.|+.+|||.+.+. .+.++|+|.|-+..+..+.. ..+..+..||+||+|.+.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 643234689999988765 58899999998855555443 5788999999999999999 799999988764
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEee-------ccCchh--HHHHHhhHHHH
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKPL--QRFQLMNDLCY 724 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~~--~~~~~~~~~~~ 724 (2114)
.+..+++|+||||+||.++++.|+......++......+||+||.++++.- ...... ..+...+..+.
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 367899999999999999999999977778888999999999999877532 111110 00000000000
Q ss_pred ----------------------------------HHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhccccccccc
Q 000129 725 ----------------------------------EKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (2114)
Q Consensus 725 ----------------------------------~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l 767 (2114)
-.+... .+.-|+|+|+-|++.|+..+..+.........-
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~---- 409 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE---- 409 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc----
Confidence 011111 124589999999999999999887432211100
Q ss_pred ccCchhHHHHHhhhcccC---------cchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCc
Q 000129 768 KEDSVSREILQSHTDMVK---------SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~---------~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~ 838 (2114)
.+..-..++...+.... -..+..++..|+|+|||||-+..|..|+.+|..|.++|++||.|++.|+|+|+
T Consensus 410 -~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 410 -KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred -HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 00002233443333322 23456778899999999999999999999999999999999999999999999
Q ss_pred eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC--cHHHHHHh-hcCCCcccchhhHhhHHH
Q 000129 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--e~~~~~~l-l~~~~pies~l~~~l~d~ 915 (2114)
.+||+-....+|... ..+++..+|.||.|||||.|.|..|.+|++-... +......+ .....|+.|+|.-.+...
T Consensus 489 rtvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~mi 566 (1041)
T COG4581 489 RTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMI 566 (1041)
T ss_pred cceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHH
Confidence 999999888888654 6789999999999999999999999999995442 23444444 445668888887665555
Q ss_pred HHHHHhhccccChHHHHHHHHhhHH
Q 000129 916 LNAEIVLGTVQNAKEACNWIGYTYL 940 (2114)
Q Consensus 916 l~~ei~~~~i~~~~~~~~wl~~t~~ 940 (2114)
+|.- .+...+.+-..+.++|.
T Consensus 567 lnll----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 567 LNLL----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred Hhhh----hhcccCcHHHHHHhhHH
Confidence 5532 33334444455555554
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=342.34 Aligned_cols=353 Identities=15% Similarity=0.264 Sum_probs=269.0
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE
Q 000129 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (2114)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I 1396 (2114)
-...+.-..|+...++.+|. ||..|..+|+.|++.++.+++ |++.|..|+|||.+|-+.+++.+.-.... .+++++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~r~--tQ~lil 101 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISVRE--TQALIL 101 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeecccccce--eeEEEe
Confidence 33455567888999999998 899999999999999999766 99999999999999999888877653333 389999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCccc--chhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEeccc
Q 000129 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473 (2114)
Q Consensus 1397 ~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~--~~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEa 1473 (2114)
.|||+||.|+.+.+. .++..+++++-.+.|+.+. |.+.+.-+ +++.+||+++..++++ ....-+.+.++|+||+
T Consensus 102 sPTRELa~Qi~~vi~-alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 102 SPTRELAVQIQKVIL-ALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEA 178 (400)
T ss_pred cChHHHHHHHHHHHH-HhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccH
Confidence 999999999999998 6888899999999988764 45555555 9999999999988887 3445678999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccch
Q 000129 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1474 H~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~ 1552 (2114)
|.+++.+ +-.++-.+.+.+++..|++++|||+|.. .+..+.+-..+..++.-.....---+...+...+...+
T Consensus 179 DemL~kg------fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 179 DEMLNKG------FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred HHHHHhh------HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 9887664 4444555555668999999999999752 23444443333333321111100001111111111111
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.. .....+... ..-.+++|||||++.+..+.+.+.. .
T Consensus 253 Kf-------dtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~-----------------------------------~ 289 (400)
T KOG0328|consen 253 KF-------DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------A 289 (400)
T ss_pred hH-------hHHHHHhhh-hehheEEEEecccchhhHHHHHHHh-----------------------------------h
Confidence 10 111222222 2346899999999998777765532 2
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
.+.|..+||+|++++|..+.+.|++|+.+||++|++-+||+|+|.+.+|| +|+.|.....|+||+||+||
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi----------NYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI----------NYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE----------ecCCCccHHHHhhhhccccc
Confidence 34589999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
- ++.|.++-|+.+.+...++.+.
T Consensus 360 F--GRkGvainFVk~~d~~~lrdie 382 (400)
T KOG0328|consen 360 F--GRKGVAINFVKSDDLRILRDIE 382 (400)
T ss_pred c--CCcceEEEEecHHHHHHHHHHH
Confidence 5 8999999999998877766555
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=383.21 Aligned_cols=613 Identities=20% Similarity=0.289 Sum_probs=410.0
Q ss_pred CCCCCCHHHHHHHHH--HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1338 GFKHFNPIQTQVFTV--LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~--il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
|...++.+|.+|+.. ++ .+.|.|.++||+.|||+++++-+++..... .+ .++.+.|..+.+.+....+. .|.
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~--rr--~~llilp~vsiv~Ek~~~l~-~~~ 293 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR--RR--NVLLILPYVSIVQEKISALS-PFS 293 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH--hh--ceeEecceeehhHHHHhhhh-hhc
Confidence 577899999999864 55 688999999999999999999999887763 33 78999999999999888887 566
Q ss_pred CCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i 1494 (2114)
..+|+.|-...|..... +..+.-++.|||.|+-..+..+.-....+..+++|||||.|++++ .+|..+|.+++.+.+.
T Consensus 294 ~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 66799998888766544 334556899999999888877655555688899999999999998 5899999999999988
Q ss_pred HhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH---hcC----------H
Q 000129 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ---AMT----------K 1561 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~---~~~----------~ 1561 (2114)
... ..+|+||||||++|..+++.|+.+. .+...+||+|+..++..-....-..++. ... .
T Consensus 373 ~~~--~~~~iIGMSATi~N~~lL~~~L~A~-----~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 373 NLE--TSVQIIGMSATIPNNSLLQDWLDAF-----VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred ccc--cceeEeeeecccCChHHHHHHhhhh-----heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 653 3488999999999999999999854 3567789999987764322111111111 000 0
Q ss_pred --HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccC-CCcccchhhH---hhhhHHHHHHHhccc
Q 000129 1562 --PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL-WPAEEVEPFI---DNIQEEMLKATLRHG 1635 (2114)
Q Consensus 1562 --~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~-~~~~~l~~~~---~~i~d~~L~~~l~~g 1635 (2114)
.....+.+.+.++.++|||||+|+.|+.+|..++........... +.. +......... ...-|..++..+.+|
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 111222233345667999999999999999877665433211111 110 0000011111 112346688899999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC
Q 000129 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2114)
Q Consensus 1636 V~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~ 1715 (2114)
++|||+|++.++|+.|+..|++|.+.|++||+++++|+|+|+.+|||+ .+++. ....+..+|.||+|||||+|.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir-aP~~g-----~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR-APYVG-----REFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe-CCccc-----cchhhhhhHHhhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999993 22222 123567899999999999999
Q ss_pred CCceEEEEEeecCcHHHHHHHHHhccCCCCccccCC-------------------CccchHHH--------------HHH
Q 000129 1716 DNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNLQGV-------------------SHRHLSDH--------------LSE 1762 (2114)
Q Consensus 1716 ~~~G~~iil~~~~~~~~~~~~lRl~~nP~~y~l~~~-------------------s~~~l~~~--------------lse 1762 (2114)
|..|.++++|.+.++..+..+++.-..|.+-.+..- +..++..+ .++
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~~~~~~~ 678 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEKPENVRE 678 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccchhhhhh
Confidence 999999999999998777777754444433322100 00111111 011
Q ss_pred HHHHHHHH----------HHHCCCce-ec-CCCccccCcccchhhhcccCHhHHHHHHhhcCCCCC---hhhHHHHHhcC
Q 000129 1763 LVENTISD----------LEASKCII-IE-EDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTR---MKGLLEVLASA 1827 (2114)
Q Consensus 1763 lve~~l~~----------L~~~~~I~-~~-~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~---~~~iL~ils~a 1827 (2114)
..+..... +.+..+|. .. +.....+|.+|...=.-.+++.-.-.+...|..... +...+++|---
T Consensus 679 ~le~~s~ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylv 758 (1008)
T KOG0950|consen 679 QLEMESDQLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLYLV 758 (1008)
T ss_pred cccchhhhhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceeeee
Confidence 11111111 11111111 00 011122778888766667776655544433322211 11111111000
Q ss_pred ccc-cCCCCCcchHHHHHHHHhhCCccc---------------------CCCCCCChH----HHHHHHHHHHhcCCCCC-
Q 000129 1828 SEY-AQLPIRPGEEEVVRRLIHHQRFSF---------------------ENPKFTDPH----VKANALLQAHFSRQQVG- 1880 (2114)
Q Consensus 1828 ~Ef-~~i~vR~~E~~~l~~L~~~~p~~~---------------------~~~~~~~~~----~K~~lLLqahlsr~~lp- 1880 (2114)
.=| ... +..+.-++..+...+|-.. ......... .=+.+.||..++..+++
T Consensus 759 tP~~~~~--~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~ 836 (1008)
T KOG0950|consen 759 TPYLEVM--NDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRT 836 (1008)
T ss_pred cchHhhc--ccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHH
Confidence 000 000 0111111222222211100 001111121 22567788999888776
Q ss_pred --CCc---hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCC
Q 000129 1881 --GNL---KLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGK 1955 (2114)
Q Consensus 1881 --~~l---~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~ 1955 (2114)
..| ++=+...+.++.....+..-.+.+.+|..-....-++.+++..|.-.+..||+.+|++...+++.++.+|
T Consensus 837 V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Ag-- 914 (1008)
T KOG0950|consen 837 VAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQLFKAG-- 914 (1008)
T ss_pred HHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHHHHHhh--
Confidence 223 5667788889999999888888899997433444578889999999999999999999999999999999
Q ss_pred cccCHHHHhcCCHHHHHHHhc
Q 000129 1956 SIETVFDLVEMEDDERRELLQ 1976 (2114)
Q Consensus 1956 ~i~t~~dl~~~~~~~r~~ll~ 1976 (2114)
++|+.++++..+.+..+-|.
T Consensus 915 -f~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 915 -FTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred -ccchHHHhcCChHHHHHHhh
Confidence 99999999999988766553
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=395.67 Aligned_cols=328 Identities=21% Similarity=0.278 Sum_probs=237.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||+.|+|+|.++++.++.+. +++++||||||||++|++|++.. +..+|||+|+++|+.|++..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 489999999999999999876 59999999999999999998752 126899999999999999988
Q ss_pred HHhhccCCcEEEEEeCCCccChh-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.. .|+.+..++|+...... .....+|+++|||++....+.........++++|||||||++.+ .|..+
T Consensus 72 ~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 72 KA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 75 47888888887654421 12357999999998621111110001356799999999999875 23223
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhH
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (2114)
...+.++... ....+++++++||||+++. .++..+++.. .+.++..+..|| .+... +..+.. .....
T Consensus 147 r~~~~~l~~l-~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~--~~~~~~~s~~r~-nl~~~---v~~~~~-~~~~~--- 215 (470)
T TIGR00614 147 RPDYKALGSL-KQKFPNVPIMALTATASPSVREDILRQLNLK--NPQIFCTSFDRP-NLYYE---VRRKTP-KILED--- 215 (470)
T ss_pred HHHHHHHHHH-HHHcCCCceEEEecCCCHHHHHHHHHHcCCC--CCcEEeCCCCCC-CcEEE---EEeCCc-cHHHH---
Confidence 3222232222 2234678999999998752 4566666543 222222222232 22211 111111 11111
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEec
Q 000129 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2114)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hH 801 (2114)
+...+.....+..+||||+|++.|+.++..|...+ ..++.+|
T Consensus 216 -l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~~~~H 257 (470)
T TIGR00614 216 -LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAAGAYH 257 (470)
T ss_pred -HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCeeEee
Confidence 22223333445677999999999999999987643 2367789
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceE
Q 000129 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2114)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2114)
|+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..|.
T Consensus 258 ~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G--~~~~ 325 (470)
T TIGR00614 258 AGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG--LPSE 325 (470)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--CCce
Confidence 9999999999999999999999999999999999999999999 77765 7889999999999988 6799
Q ss_pred EEEEcCCCcHHHHHHhhc
Q 000129 882 GIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 882 ~iil~~~~e~~~~~~ll~ 899 (2114)
|+++++..+...+..++.
T Consensus 326 ~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 326 CHLFYAPADINRLRRLLM 343 (470)
T ss_pred EEEEechhHHHHHHHHHh
Confidence 999999988877777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=394.29 Aligned_cols=333 Identities=20% Similarity=0.318 Sum_probs=249.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
++..| ||+.|+|+|.++++.+++++ ++++++|||||||+||++|++. ..+ .+|||+|+++|+.|++..+.
T Consensus 3 l~~~~-g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~------~~~--~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVF-GLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALC------SDG--ITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHH------cCC--cEEEEecHHHHHHHHHHHHH
Confidence 44555 59999999999999999876 5999999999999999999874 234 79999999999999999887
Q ss_pred HHhcCCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchH
Q 000129 1412 IKFGQGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
. .|+.+..++|+...+. ..+ ...+|+++|||++....+.+.......++++|||||||++.++ |..+
T Consensus 73 ~-----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~-g~~f 146 (470)
T TIGR00614 73 A-----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQW-GHDF 146 (470)
T ss_pred H-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcc-cccc
Confidence 3 2678888888766441 112 2358999999997542221111114678999999999999755 4555
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
...+.++..+...+ ++.+++++|||+++. .++.++++.....++..+. .|| .+...+..... . . ...
T Consensus 147 r~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~r~-nl~~~v~~~~~-~---~----~~~ 215 (470)
T TIGR00614 147 RPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-DRP-NLYYEVRRKTP-K---I----LED 215 (470)
T ss_pred HHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-CCC-CcEEEEEeCCc-c---H----HHH
Confidence 55555665555444 478899999999774 5788888876544443222 222 22222221110 0 0 011
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+... .+++.+||||+|++.|+.++..|.. .+..+..+||+
T Consensus 216 l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~-----------------------------------~g~~~~~~H~~ 259 (470)
T TIGR00614 216 LLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQN-----------------------------------LGIAAGAYHAG 259 (470)
T ss_pred HHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHh-----------------------------------cCCCeeEeeCC
Confidence 12222222 3556679999999999999977632 23468899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++++|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||. +..|.|+
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----------~~~~P~s~~~y~Qr~GRaGR~--G~~~~~~ 327 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----------HYSLPKSMESYYQESGRAGRD--GLPSECH 327 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----------EeCCCCCHHHHHhhhcCcCCC--CCCceEE
Confidence 9999999999999999999999999999999999999999 899999999999999999997 6799999
Q ss_pred EEeecCcHHHHHHHHHh
Q 000129 1723 ILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1723 il~~~~~~~~~~~~lRl 1739 (2114)
+++...+...+++++..
T Consensus 328 ~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 328 LFYAPADINRLRRLLME 344 (470)
T ss_pred EEechhHHHHHHHHHhc
Confidence 99998888877777643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=363.93 Aligned_cols=344 Identities=19% Similarity=0.225 Sum_probs=268.5
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc--cCCCceEEEEEcccHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~--~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+..+.+-. +|..++.+|+++|+.++.|++ ||-+|.||||||++|++|+++++... .+..++-||+|.|||+||.|+
T Consensus 79 ~t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~Qt 157 (758)
T KOG0343|consen 79 KTLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQT 157 (758)
T ss_pred HHHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHH
Confidence 33444433 599999999999999999888 99999999999999999999998764 234456899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchH
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
+..+. +.|+..+.+.+.+.|+.... ...+.+.+|+||||+++..++.... ...-.++.++|+||||++.+.+
T Consensus 158 FevL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMG---- 231 (758)
T KOG0343|consen 158 FEVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMG---- 231 (758)
T ss_pred HHHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHh----
Confidence 99998 78888899999999987755 4466778999999999887776522 2245679999999999998876
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecC---CCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP---PGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~---~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+-..+..|...++...|.++||||..+ ..|++..--..+. ++.++ ...-|..+...+...+..+- .
T Consensus 232 --Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~-~vsvhe~a~~atP~~L~Q~y~~v~l~~K-------i 301 (758)
T KOG0343|consen 232 --FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV-YVSVHENAVAATPSNLQQSYVIVPLEDK-------I 301 (758)
T ss_pred --HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc-EEEEeccccccChhhhhheEEEEehhhH-------H
Confidence 667777777888999999999999876 4567664332221 22211 12223333333222221111 1
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
..++..|..| ...++|||++|.+++..++..++..- .+..+..+|
T Consensus 302 ~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlr---------------------------------pg~~l~~L~ 346 (758)
T KOG0343|consen 302 DMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLR---------------------------------PGIPLLALH 346 (758)
T ss_pred HHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcC---------------------------------CCCceeeec
Confidence 1234444444 46789999999999998887664321 234578899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+|++..|..|+..|....--||+||++++||+|+|++.+|| ++++|..+.+|+||+||+.|. +..|.
T Consensus 347 G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi----------Q~DCPedv~tYIHRvGRtAR~--~~~G~ 414 (758)
T KOG0343|consen 347 GTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI----------QVDCPEDVDTYIHRVGRTARY--KERGE 414 (758)
T ss_pred cchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE----------EecCchhHHHHHHHhhhhhcc--cCCCc
Confidence 999999999999999999999999999999999999999999 899999999999999999997 89999
Q ss_pred EEEEeecCcHHHHHHHH
Q 000129 1721 CVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~l 1737 (2114)
++++..+++.+.+-.-+
T Consensus 415 sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 415 SLLMLTPSEEEAMLKKL 431 (758)
T ss_pred eEEEEcchhHHHHHHHH
Confidence 99999999866655555
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=372.70 Aligned_cols=383 Identities=21% Similarity=0.267 Sum_probs=269.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCC---CCCCCCCcE--EE
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD---GSFNHSNYK--IV 554 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~---g~~~~~~~k--il 554 (2114)
||..+..++ .||..|++||+.++|.++.+.-++|..|.||||||++|-+||+..+....... .......++ ++
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 344444554 69999999999999999999777999999999999999999999665432211 011122334 99
Q ss_pred EEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhH-HHHHHhccCCCcccccccEEEEe
Q 000129 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIID 630 (2114)
Q Consensus 555 ~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek-~d~l~r~~~~~~~l~~v~liIiD 630 (2114)
|++|||+||.|+.+.+.......+++|..++|+....+++ ...++|+|+||++ |.++.........++.++++|+|
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlD 347 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLD 347 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEc
Confidence 9999999999999999999888999999999998877765 2578999999999 57666555445567889999999
Q ss_pred ccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-----------ecCCcccc
Q 000129 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-----------FDNSYRPV 698 (2114)
Q Consensus 631 EaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-----------f~~~~rpv 698 (2114)
|+++|.+ +.-..+..++..+. -++.....|.+.+|||+.-. ...-+........-. -.-.++.-
T Consensus 348 EaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~--~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k 423 (731)
T KOG0347|consen 348 EADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLV--LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK 423 (731)
T ss_pred cHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehh--hcChhHHhhhccchhhhhhHHHHHHHHHhCccCC
Confidence 9999987 45556666666554 13345677999999998621 111111000000000 00001110
Q ss_pred cceeEEEeeccCchhHHHHHhhHH------------HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccc
Q 000129 699 PLSQQYIGIQVKKPLQRFQLMNDL------------CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (2114)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~ 766 (2114)
| .++..+... .-...+.+. +|-.+.. -.+++|||||+...+.+++-.|....+..-
T Consensus 424 p---kiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~----- 491 (731)
T KOG0347|consen 424 P---KIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPL----- 491 (731)
T ss_pred C---eeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCc-----
Confidence 1 111111110 000000000 0000111 167899999999999999998876554332
Q ss_pred cccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecc
Q 000129 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (2114)
Q Consensus 767 l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~ 846 (2114)
.+||.|.+.+|...++.|++..-.||+||+++|||+|+|.|.+||+|.
T Consensus 492 --------------------------------~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 492 --------------------------------PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred --------------------------------hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEee
Confidence 349999999999999999999999999999999999999999999944
Q ss_pred eeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC--------CCcccchhhHhhHHH--H
Q 000129 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ--------QLPIESQFVSKLADQ--L 916 (2114)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~--------~~pies~l~~~l~d~--l 916 (2114)
.|- +..-|+||.||+.|++ ..|..+++|.+.+...|.++... -+||+..++..+.+. |
T Consensus 540 VPr----------tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrL 607 (731)
T KOG0347|consen 540 VPR----------TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRL 607 (731)
T ss_pred cCC----------ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHH
Confidence 443 4445999999999987 67999999999998888775321 258888777766554 4
Q ss_pred HHHHhhcc
Q 000129 917 NAEIVLGT 924 (2114)
Q Consensus 917 ~~ei~~~~ 924 (2114)
..||..-.
T Consensus 608 A~ei~~~e 615 (731)
T KOG0347|consen 608 AREIDKLE 615 (731)
T ss_pred HHHHHHhh
Confidence 44554433
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=346.53 Aligned_cols=341 Identities=18% Similarity=0.279 Sum_probs=264.8
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
-|+...+..+|. ||..|+|+|.++|+.++.+.+ +++-|..|+|||.+|.+|+++.+... ....++++++|||+||-
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelAL 167 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELAL 167 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhhH
Confidence 456677888887 899999999999999998666 99999999999999999999998773 33469999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG 1480 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~ 1480 (2114)
|+.+..+ .+++.+|++|...+|+++.... .-...+++|+||+++..+..+ .-..+++..++|+||||.+.+ +.
T Consensus 168 QtSqvc~-~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 168 QTSQVCK-ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred HHHHHHH-HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchhh
Confidence 9999887 7888899999999999886533 333449999999999988876 344688999999999998876 45
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCC--CCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT--SHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~--~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
++.++.+++ .+++..|++++|||.|.. +..|+... ....+|...+..+.-+..++..... ...
T Consensus 245 ~~~~e~li~-------~lP~~rQillySATFP~t--Vk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e---~qK--- 309 (459)
T KOG0326|consen 245 QPIVEKLIS-------FLPKERQILLYSATFPLT--VKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEE---RQK--- 309 (459)
T ss_pred hhHHHHHHH-------hCCccceeeEEecccchh--HHHHHHHhccCcceeehhhhhhhcchhhheeeech---hhh---
Confidence 555555543 458899999999999874 33333221 1123333332222222211111100 000
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
-...+.+... ..-.++||||||...++.+|+.+.+ +++.+.+
T Consensus 310 --vhCLntLfsk-LqINQsIIFCNS~~rVELLAkKITe-----------------------------------lGyscyy 351 (459)
T KOG0326|consen 310 --VHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITE-----------------------------------LGYSCYY 351 (459)
T ss_pred --hhhHHHHHHH-hcccceEEEeccchHhHHHHHHHHh-----------------------------------ccchhhH
Confidence 0112223333 2457899999999999999977733 5667889
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
.|+.|-+++|.+|+..|++|..+.||||+.+.||+|+++++||| ++++|.+...|+||+||+||- +..
T Consensus 352 iHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----------NFDfpk~aEtYLHRIGRsGRF--Ghl 419 (459)
T KOG0326|consen 352 IHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----------NFDFPKNAETYLHRIGRSGRF--GHL 419 (459)
T ss_pred HHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----------ecCCCCCHHHHHHHccCCccC--CCc
Confidence 99999999999999999999999999999999999999999999 999999999999999999995 899
Q ss_pred eEEEEEeecCcHHHHHHHH
Q 000129 1719 GKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1719 G~~iil~~~~~~~~~~~~l 1737 (2114)
|.|+-+++-.++..+.++.
T Consensus 420 GlAInLityedrf~L~~IE 438 (459)
T KOG0326|consen 420 GLAINLITYEDRFNLYRIE 438 (459)
T ss_pred ceEEEEEehhhhhhHHHHH
Confidence 9999998877765554444
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=400.11 Aligned_cols=334 Identities=18% Similarity=0.264 Sum_probs=244.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
......| |+..|+|+|.++|+.++.+.+ +++++|||+|||+||++|++.. .+ .+|||+|+++|+.++...
T Consensus 450 ~~lk~~F-G~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~------~G--iTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 450 VNNKKVF-GNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC------PG--ITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc------CC--cEEEEeCHHHHHHHHHHH
Confidence 3455555 599999999999999998665 9999999999999999999841 34 899999999999977766
Q ss_pred HHHHhcCCCCcEEEEEcCCcccch-----hhc----cCCcEEEEChhhHH---HHHhhhcccccccceeEEEeccccccc
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLL----EKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~-----~~l----~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.. .|+.+..+.|+..... +.+ ...+|+|+|||++. .+++..........+.+|||||||++.
T Consensus 520 L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 520 LLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 652 3788888988776431 112 34599999999985 234332222223458999999999998
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHH
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 1555 (2114)
+++ ..+..-+.++..+...+ ...++++||||++. ..++...++.....++. ....|| .+...+.... ...
T Consensus 595 qWG-hDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~k~----kk~ 666 (1195)
T PLN03137 595 QWG-HDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVPKT----KKC 666 (1195)
T ss_pred hcc-cchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEeccc----hhH
Confidence 654 44444444444443333 46789999999875 34788888765433322 222233 2322222110 000
Q ss_pred HHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000129 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2114)
Q Consensus 1556 ~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2114)
. ..+...+... ..+.++||||+|+++|+.++..|.. .+..
T Consensus 667 l----e~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~-----------------------------------~Gik 706 (1195)
T PLN03137 667 L----EDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQE-----------------------------------FGHK 706 (1195)
T ss_pred H----HHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHH-----------------------------------CCCC
Confidence 0 1111122111 2356799999999999999976632 2456
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC
Q 000129 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2114)
Q Consensus 1636 V~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~ 1715 (2114)
+.+|||||++++|..+++.|.+|+++|||||++++||||+|++++|| |++.|.++.+|+||+|||||.
T Consensus 707 a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI----------HydlPkSiEsYyQriGRAGRD-- 774 (1195)
T PLN03137 707 AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----------HHSLPKSIEGYHQECGRAGRD-- 774 (1195)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE----------EcCCCCCHHHHHhhhcccCCC--
Confidence 89999999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCceEEEEEeecCcHHHHHHHHH
Q 000129 1716 DNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1716 ~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
+..|.|++++...+...++.+++
T Consensus 775 G~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 775 GQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCCceEEEEecHHHHHHHHHHHh
Confidence 67899999998777666666663
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=360.80 Aligned_cols=382 Identities=19% Similarity=0.212 Sum_probs=258.0
Q ss_pred CCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceE
Q 000129 1317 LDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMR 1392 (2114)
Q Consensus 1317 ldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k 1392 (2114)
+.|.|..++.|.+ .. ++..+|.+|.|+||.+++++| ++|.|+||||||++|++|+++.+.... ...++-
T Consensus 141 LGL~~~lv~~L~~-----~m-~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 141 LGLHPHLVSHLNT-----KM-KISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred cCCCHHHHHHHHH-----Hh-ccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 4455555444432 32 499999999999999999777 999999999999999999999998752 223568
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEE
Q 000129 1393 AVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (2114)
Q Consensus 1393 ~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liI 1469 (2114)
+|||+||||||.|+|+.+.+.+....-+--+.+.|+.... ...++++ +|+|+||+++...+.+-+ ...+++++++|
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~-~i~~s~LRwlV 292 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTK-SIKFSRLRWLV 292 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccc-hheeeeeeEEE
Confidence 9999999999999999999766665555556666665433 2344444 999999999988887643 33578899999
Q ss_pred ecccccccCC-CCchHHHHHHHHHHHHhh------cCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCC--------
Q 000129 1470 IDELHLIGGQ-GGPVLEVIVSRMRYIASQ------VENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPP-------- 1533 (2114)
Q Consensus 1470 iDEaH~l~~~-~g~~le~i~srl~~i~~~------~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~-------- 1533 (2114)
+||+|.|.+- .+..+..++.-+..+... ++...+-+++|||+.+. .+++..--..+. ++....
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv-~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPV-YISLDKSHSQLNPK 371 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCce-eeeccchhhhcCcc
Confidence 9999999875 366677777666433221 22347789999999753 244432211111 111000
Q ss_pred -----CCCccCcEEEEecccccch-HH---------HHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhh
Q 000129 1534 -----GVRPVPLEIHIQGVDITNF-EA---------RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYS 1598 (2114)
Q Consensus 1534 -----~~rpv~l~~~~~~~~~~~~-~~---------~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~ 1598 (2114)
.+.+.|-.-.+..+..+.. .. ++.++.. .+...... ....++|||+++...++.-+..+....
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa-~L~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAA-LLLNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHH-HHHHHhhh-hhhceeEEEEechhHHHHHHHHHHhhh
Confidence 0001100000001111100 00 1111100 01111111 345579999999999887777665544
Q ss_pred ccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc
Q 000129 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1599 ~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~ 1678 (2114)
........ -....+.+ ..-.+...+.-+||+|++++|..+++.|....-.||+||++++||+|+|.+
T Consensus 450 ~~~~e~~s--~~~~s~g~-----------~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V 516 (708)
T KOG0348|consen 450 LSHLEGSS--GAPDSEGL-----------PPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516 (708)
T ss_pred hccccccc--CCcccCCC-----------hhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCc
Confidence 33110000 00001111 112234458889999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
.+|| .|+.|.+.++|+||+||+.|. |..|.+++|..+.+.+|..
T Consensus 517 ~~vV----------QYd~P~s~adylHRvGRTARa--G~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 517 GLVV----------QYDPPFSTADYLHRVGRTARA--GEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred CeEE----------EeCCCCCHHHHHHHhhhhhhc--cCCCceEEEecccHHHHHH
Confidence 9999 899999999999999999998 6899999999999888544
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=374.75 Aligned_cols=367 Identities=26% Similarity=0.440 Sum_probs=285.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+-|+|++++.++ ..+++|+|+|.|.+|||++|+.||...+.. +. |+||..|-++|.+|.|+++...|+.
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~D---- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFKD---- 198 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhcc----
Confidence 6899999999988 457789999999999999999999998887 45 9999999999999999999999974
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~ 1499 (2114)
|+..|||.+.+ ..+..+|+|.|.|-+++-+ +...++.|.+||+||+|.+-+ +||-+||..+- .++
T Consensus 199 -VGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII-------llP 264 (1041)
T KOG0948|consen 199 -VGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-------LLP 264 (1041)
T ss_pred -cceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEE-------ecc
Confidence 88999999877 4678999999999887765 556789999999999999987 78999987652 247
Q ss_pred CCceEEEEcccCCChhHHHHHhcCC-CCceeecCCCCCccCcEEEEec---------------ccccchHHHHHhcCH--
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHIQG---------------VDITNFEARMQAMTK-- 1561 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~-~~~~~~f~~~~rpv~l~~~~~~---------------~~~~~~~~~~~~~~~-- 1561 (2114)
.++|.|+||||+||+.+||+|+..- ...+...-..+||.|++.++.. |...++...+..+.+
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 8999999999999999999999643 3344555678999999987543 122223332221110
Q ss_pred -------------------------HHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCccc
Q 000129 1562 -------------------------PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (2114)
Q Consensus 1562 -------------------------~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (2114)
..+..+...+ ....|+|||+-|+++|+..|..+...-...+..+. .+ .+-
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~-~V---~~i 420 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE-LV---ETI 420 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH-HH---HHH
Confidence 2223222211 34579999999999999999888654332222211 00 000
Q ss_pred chhhHhhhhH--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeE
Q 000129 1616 VEPFIDNIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2114)
Q Consensus 1616 l~~~~~~i~d--------~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~ 1687 (2114)
....+..+.+ +.....+..|||+||+||-+--+..|+-+|.+|-++||+||.+++.|+|.|+.+||+...+.
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccc
Confidence 1111122211 34556788999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH-HHHHHH
Q 000129 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFL 1737 (2114)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~-~~~~~l 1737 (2114)
|||...++ .|--+|+||.|||||.|.|..|.||+|+.+.... ..+.++
T Consensus 501 fDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 501 FDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred cCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 99997654 5778999999999999999999999999987543 333344
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=371.41 Aligned_cols=346 Identities=22% Similarity=0.290 Sum_probs=257.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCC--CCcEEEEEc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVA 557 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~--~~~kil~ia 557 (2114)
+++.+.... .|+..|||+|+-+|+.+..+++ +++|||||||||.+|++|++..+......+..... ..+.+++++
T Consensus 81 l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335|consen 81 LGEALAGNIKRSGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred hhHHHhhccccccccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEe
Confidence 344444333 6899999999999998877766 99999999999999999999998876442211111 358999999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|||+||.|++.+.++.....++++...+|+.+...+ ...+++|+|+||+++ |.+.++. ..+++++++|+|||+
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEAD 236 (482)
T KOG0335|consen 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEAD 236 (482)
T ss_pred CcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchH
Confidence 999999999999999888888999999999665443 346899999999998 6666554 567889999999999
Q ss_pred cccc--CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCC--cccccceeEEEee
Q 000129 634 LLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGI 707 (2114)
Q Consensus 634 ~l~d--~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~ 707 (2114)
.|.| .|+|.++.|+.++-. ......|.+++|||.|.. ...+.|+..+ .++.-... -.+..+.+.+..+
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~---~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V 310 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGM---PPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFV 310 (482)
T ss_pred HhhhhccccccHHHHhcccCC---CCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeee
Confidence 9999 699999988876511 113467899999999841 1223333321 12211111 1123444555444
Q ss_pred ccCchhHHHHHhhHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc
Q 000129 708 QVKKPLQRFQLMNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2114)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (2114)
........ +.+++-... .... ...++|||.|++.+..++..|...+.....
T Consensus 311 ~~~~kr~~---Lldll~~~~-~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~s-------------------- 366 (482)
T KOG0335|consen 311 NEMEKRSK---LLDLLNKDD-GPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKS-------------------- 366 (482)
T ss_pred cchhhHHH---HHHHhhccc-CCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCcee--------------------
Confidence 43322221 111111100 0001 238999999999999999999876655433
Q ss_pred ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHH
Q 000129 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2114)
Q Consensus 783 ~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2114)
.||.-++.+|...++.|++|.+.|||||+++|||+|+|+|++||+ ||.+. ...
T Consensus 367 -----------------Ihg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d 419 (482)
T KOG0335|consen 367 -----------------IHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DID 419 (482)
T ss_pred -----------------ecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chh
Confidence 399999999999999999999999999999999999999999999 66554 466
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
+|+||+||+||.| ..|.++.|++...
T Consensus 420 ~YvHRIGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 420 DYVHRIGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred hHHHhccccccCC--CCceeEEEecccc
Confidence 8999999999998 7899999988443
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=394.68 Aligned_cols=422 Identities=18% Similarity=0.222 Sum_probs=285.3
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEE
Q 000129 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKV 581 (2114)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~v 581 (2114)
.|-.++.++.++|++||||||||+++.+++++.... +.+++|++|+|++|.|+++++.+.++ ..|..|
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 344456677889999999999999999999987521 23899999999999999999976554 456677
Q ss_pred EEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc-ccc-CCchhHHHHHHHHHHHHhhccc
Q 000129 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKE 659 (2114)
Q Consensus 582 ~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~rl~~~~~~~~~ 659 (2114)
+...+..+ .....++|+|+||+.+-.... ....++++++|||||+|. ..+ +.+-. ++..+ ......
T Consensus 78 Gy~vr~~~---~~s~~t~I~v~T~G~Llr~l~---~d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~ 145 (819)
T TIGR01970 78 GYRVRGEN---KVSRRTRLEVVTEGILTRMIQ---DDPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRE 145 (819)
T ss_pred EEEEcccc---ccCCCCcEEEECCcHHHHHHh---hCcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCC
Confidence 66555432 223468999999997632222 235688999999999994 333 33221 11111 122456
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIF 739 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVF 739 (2114)
+.|+|+||||+++ +.+..|++.. ..+...+ +..|+.+.|....... .....+...+.. +... ..+++|||
T Consensus 146 dlqlIlmSATl~~-~~l~~~l~~~---~vI~~~g--r~~pVe~~y~~~~~~~--~~~~~v~~~l~~-~l~~-~~g~iLVF 215 (819)
T TIGR01970 146 DLKILAMSATLDG-ERLSSLLPDA---PVVESEG--RSFPVEIRYLPLRGDQ--RLEDAVSRAVEH-ALAS-ETGSILVF 215 (819)
T ss_pred CceEEEEeCCCCH-HHHHHHcCCC---cEEEecC--cceeeeeEEeecchhh--hHHHHHHHHHHH-HHHh-cCCcEEEE
Confidence 8999999999975 4567777532 2333333 3334555554332211 111112222222 1121 25789999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCC
Q 000129 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2114)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2114)
|++++++..++..|.+... ....+..+||+|+.++|..+++.|++|
T Consensus 216 lpg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G 261 (819)
T TIGR01970 216 LPGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQG 261 (819)
T ss_pred ECCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccC
Confidence 9999999999998875310 012367789999999999999999999
Q ss_pred CceEEEechHhhhhcCCCceEEEEecce----eccCCCCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
..+|||||+++++|||+|++++||+++. .||+.+|. ..++|..+|.||+|||||. ..|.||.+++..+.
T Consensus 262 ~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 262 RRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQH 338 (819)
T ss_pred CeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHH
Confidence 9999999999999999999999999764 47877663 2678999999999999997 58999999987654
Q ss_pred HHHHHhhcCCCc--ccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhH
Q 000129 892 RYYLSLMNQQLP--IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (2114)
Q Consensus 892 ~~~~~ll~~~~p--ies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~ 969 (2114)
..+. ....| ..+.+ ...+..-...| +. +|..+ +.++.+..
T Consensus 339 ~~l~---~~~~PEI~r~~L----~~~~L~l~~~g-~~--------------------~~~~~----------~~l~~P~~ 380 (819)
T TIGR01970 339 QRLP---AQDEPEILQADL----SGLALELAQWG-AK--------------------DPSDL----------RWLDAPPS 380 (819)
T ss_pred Hhhh---cCCCcceeccCc----HHHHHHHHHcC-CC--------------------ChhhC----------CCCCCcCH
Confidence 3322 22222 11222 11111111111 11 11111 11222333
Q ss_pred HHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCcc
Q 000129 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038 (2114)
Q Consensus 970 ~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~e 1038 (2114)
..+..|+..|...|+|+.+ | .+|++|+.||.++++|...+++..+...+|. .+.+.|.|+-+|
T Consensus 381 ~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~ls~ 443 (819)
T TIGR01970 381 VALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAALLEE 443 (819)
T ss_pred HHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHcC
Confidence 5688999999999999743 3 6899999999999999999999987665554 456666565444
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=390.23 Aligned_cols=334 Identities=20% Similarity=0.298 Sum_probs=242.3
Q ss_pred ccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 478 KISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 478 ~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
+...++..+.....||.+|+|+|.++++.++.+. +++++||||||||++|++|++.. . ..+|||+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~---~-----------g~tlVis 72 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL---D-----------GLTLVVS 72 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc---C-----------CCEEEEe
Confidence 3344443333333699999999999999988775 59999999999999999998853 1 1689999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHH--HHHhccCCCcccccccEEE
Q 000129 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLI 628 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d--~l~r~~~~~~~l~~v~liI 628 (2114)
|+++|+.|++..+... |+.+..+.++....... ....+++++|||++. .+... ....++++||
T Consensus 73 Pl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iV 144 (607)
T PRK11057 73 PLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLA 144 (607)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEE
Confidence 9999999999988763 78888777765543221 235789999999962 22222 2234689999
Q ss_pred Eeccccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCcccccceeE
Q 000129 629 IDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703 (2114)
Q Consensus 629 iDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~~ 703 (2114)
|||||++.+ .+.+.+..+ ..+ ....+.++++++|||+++. .++..+++.. .+........||. +.
T Consensus 145 IDEaH~i~~~G~~fr~~y~~L-~~l----~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~-- 214 (607)
T PRK11057 145 VDEAHCISQWGHDFRPEYAAL-GQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IR-- 214 (607)
T ss_pred EeCccccccccCcccHHHHHH-HHH----HHhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ce--
Confidence 999999875 345554432 222 2234678999999998863 3455555432 3333333333432 21
Q ss_pred EEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc
Q 000129 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2114)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 783 (2114)
+....... .... +...+ ....++++||||+|++.|+.++..|...+
T Consensus 215 ~~v~~~~~---~~~~----l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g-------------------------- 260 (607)
T PRK11057 215 YTLVEKFK---PLDQ----LMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG-------------------------- 260 (607)
T ss_pred eeeeeccc---hHHH----HHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC--------------------------
Confidence 11111111 1111 11212 22346799999999999999999987643
Q ss_pred cCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHH
Q 000129 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2114)
Q Consensus 784 ~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2114)
..++.+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+
T Consensus 261 -----------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~~ 319 (607)
T PRK11057 261 -----------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIES 319 (607)
T ss_pred -----------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHHH
Confidence 23678899999999999999999999999999999999999999999999 77665 7889
Q ss_pred HHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCC
Q 000129 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2114)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~ 901 (2114)
|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 320 y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 320 YYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred HHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 999999999998 569999999998888887776543
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=335.86 Aligned_cols=341 Identities=19% Similarity=0.266 Sum_probs=259.9
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
|+.++..+ .+|..|+.||..++|.++.. ..|+|.++..|+|||.+|.|+||..+... ...+++++|+|+|
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 55566655 78999999999999998876 46999999999999999999999887543 2346899999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCC
Q 000129 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
+||.|+.+.+.+..+..++++....-+....+...-..+|+|+||+.+ |...+... ..++.++.+|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~--id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKC--IDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHh--hChhhceEEEecchhhhhhcc
Confidence 999999999999888778888877777655554445679999999997 55554221 457889999999999998855
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc--CceEeecCCcccccceeEEEeeccCchhHHHH
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE--KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~--~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2114)
|-.=.+ .+.....+++.|++++|||.. +.++.|...-.. +.++.-.....--++.+.++. +.....+++
T Consensus 249 G~~D~S-----~rI~~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~--C~~~~~K~~ 319 (477)
T KOG0332|consen 249 GFQDQS-----IRIMRSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVL--CACRDDKYQ 319 (477)
T ss_pred cccccc-----hhhhhhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheee--ccchhhHHH
Confidence 432221 222334567999999999975 566666643222 222222233333344444443 333344555
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+.+ +|. ...-+|.||||+|++.+.+++..++..| +.|
T Consensus 320 ~l~~-lyg----~~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYG----LLTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHh----hhhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5444 333 2235799999999999999999998765 347
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
..+||.|..++|..+.+.|+.|.-+|||+|+++|||+|++.+++|||++.|.+. ..+-+...|+||+||+||-|
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~----~~~pD~etYlHRiGRtGRFG-- 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY----TGEPDYETYLHRIGRTGRFG-- 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc----CCCCCHHHHHHHhccccccc--
Confidence 788999999999999999999999999999999999999999999995555443 34468999999999999965
Q ss_pred CceEEEEEcCCCc
Q 000129 878 SYGEGIIITGHSE 890 (2114)
Q Consensus 878 ~~G~~iil~~~~e 890 (2114)
+.|.+|-+.+..+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 8999999988765
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=391.73 Aligned_cols=327 Identities=20% Similarity=0.280 Sum_probs=241.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||.+|+|+|.++++.++.++ +++++||||+|||+||++|++.. . | .++||+|+++|+.|++..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~---~----g-------~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL---K----G-------LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc---C----C-------cEEEEcCCHHHHHHHHHHH
Confidence 489999999999999999876 59999999999999999998742 1 1 5899999999999999988
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCch
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~ 641 (2114)
... |+.+..++|+.+..... ....+|+++|||++ ..+.+. ....++++|||||||++.+ .|.
T Consensus 74 ~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~~-~g~ 144 (591)
T TIGR01389 74 RAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVSQ-WGH 144 (591)
T ss_pred HHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCccccc-ccC
Confidence 763 78899998887654321 24679999999987 222222 2345789999999999864 333
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHh
Q 000129 642 VLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 642 ~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
.++..+.++...... .+..+++++|||.+. ..++..+++... +..++.+..|| .+..... .... ...
T Consensus 145 ~frp~y~~l~~l~~~-~~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~-nl~~~v~--~~~~---~~~-- 213 (591)
T TIGR01389 145 DFRPEYQRLGSLAER-FPQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRP-NLRFSVV--KKNN---KQK-- 213 (591)
T ss_pred ccHHHHHHHHHHHHh-CCCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCC-CcEEEEE--eCCC---HHH--
Confidence 333333333322222 345569999999874 356777776542 22233333333 2221111 1111 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEE
Q 000129 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2114)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~ 799 (2114)
.+.+.+.. ..+.++||||+|++.|+.++..|...+ ..++.
T Consensus 214 --~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g-------------------------------------~~~~~ 253 (591)
T TIGR01389 214 --FLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG-------------------------------------ISALA 253 (591)
T ss_pred --HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CCEEE
Confidence 12222222 236789999999999999999887533 23678
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000129 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2114)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2114)
+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~G--~~ 321 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRDG--LP 321 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCCC--CC
Confidence 899999999999999999999999999999999999999999999 77765 7889999999999987 67
Q ss_pred eEEEEEcCCCcHHHHHHhhcCCCcc
Q 000129 880 GEGIIITGHSELRYYLSLMNQQLPI 904 (2114)
Q Consensus 880 G~~iil~~~~e~~~~~~ll~~~~pi 904 (2114)
|.|+++++..+...+..++....|-
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhccCCc
Confidence 8999999999988888887765553
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=390.70 Aligned_cols=412 Identities=18% Similarity=0.196 Sum_probs=279.0
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEE
Q 000129 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKV 581 (2114)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~v 581 (2114)
-|-.++.++.+++++||||||||+++.++++..... +.++++++|+|++|.|+++++.+.++ ..|..|
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 344455667789999999999999999999875321 13899999999999999999976554 467788
Q ss_pred EEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccc
Q 000129 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2114)
Q Consensus 582 ~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ 661 (2114)
+..++..+.. ...++|+|+||+++..+... ...++++++|||||+|.. +...+.++.-+.......+++.
T Consensus 81 Gy~vr~~~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 81 GYRMRAESKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEEecCcccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccc
Confidence 8777654322 23578999999986333332 256899999999999962 1111111221222223346789
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000129 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2114)
Q Consensus 662 riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (2114)
|+|+||||++. +.+..|+.. ...+.... +..|+.++|........ ....+...+...+ . ...+++||||+
T Consensus 151 qlilmSATl~~-~~l~~~~~~---~~~I~~~g--r~~pV~~~y~~~~~~~~--~~~~v~~~l~~~l-~-~~~g~iLVFlp 220 (812)
T PRK11664 151 KLLIMSATLDN-DRLQQLLPD---APVIVSEG--RSFPVERRYQPLPAHQR--FDEAVARATAELL-R-QESGSLLLFLP 220 (812)
T ss_pred eEEEEecCCCH-HHHHHhcCC---CCEEEecC--ccccceEEeccCchhhh--HHHHHHHHHHHHH-H-hCCCCEEEEcC
Confidence 99999999975 456777642 22333222 34455555553322111 1111111222211 1 12679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc
Q 000129 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2114)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2114)
+++++..++..|...... ...+..+||+|+..+|..+++.|++|..
T Consensus 221 g~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~r 266 (812)
T PRK11664 221 GVGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRR 266 (812)
T ss_pred CHHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCe
Confidence 999999999998752100 1236678999999999999999999999
Q ss_pred eEEEechHhhhhcCCCceEEEEecce----eccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHH
Q 000129 822 QVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893 (2114)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~ 893 (2114)
+|||||+++++|||+|++++||++.. .||+.+|.. ..+|..+|.||+|||||. ..|.||.+++..+..
T Consensus 267 kVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~- 342 (812)
T PRK11664 267 KVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE- 342 (812)
T ss_pred EEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh-
Confidence 99999999999999999999999754 488887743 568999999999999997 489999999976533
Q ss_pred HHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHH
Q 000129 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH 973 (2114)
Q Consensus 894 ~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~ 973 (2114)
.+.....| |- +...|...+......| +.+..+ + +.++.+....+.
T Consensus 343 --~l~~~~~P-EI-~r~dL~~~~L~l~~~g-~~~~~~-~-----------------------------~~ld~P~~~~~~ 387 (812)
T PRK11664 343 --RAAAQSEP-EI-LHSDLSGLLLELLQWG-CHDPAQ-L-----------------------------SWLDQPPAAALA 387 (812)
T ss_pred --hCccCCCC-ce-eccchHHHHHHHHHcC-CCCHHh-C-----------------------------CCCCCCCHHHHH
Confidence 33222233 11 1122222222111122 111110 0 112223345689
Q ss_pred HHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCC
Q 000129 974 TAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023 (2114)
Q Consensus 974 ~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~ 1023 (2114)
.|+..|...|+|+.+ ..+|++|+.||.++++|...++++.+...+
T Consensus 388 ~A~~~L~~lgald~~-----g~lT~~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 388 AAKRLLQQLGALDGQ-----GRLTARGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred HHHHHHHHCCCCCCC-----CCcCHHHHHHHhcCCchHHHHHHHHHHhcC
Confidence 999999999999733 378999999999999999999998765443
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=385.40 Aligned_cols=390 Identities=16% Similarity=0.179 Sum_probs=274.8
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+.++++++++||||||||+++.+++++.... ++ +++|++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 3557789999999999999999999987632 34 999999999999999999987887767778876655432
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc-ccC-CCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~-l~~-~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
..-.+++|+|+||+++..++.. ...++++++|||||+|. ..+ +. .+..++.+...++.+.|+|+||||+
T Consensus 86 ~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl------~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 86 KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADL------GLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccch------HHHHHHHHHHhcCCCceEEEEeCCC
Confidence 2224569999999998776654 46799999999999994 332 22 2222333434456789999999999
Q ss_pred CChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHH
Q 000129 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLT 1590 (2114)
Q Consensus 1512 ~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~l 1590 (2114)
+. ..+.++++..+ ++.. ..+..|+++++........ +. ......+...+ ...+++|||||++++++.+
T Consensus 157 ~~-~~l~~~l~~~~--vI~~--~gr~~pVe~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 157 DG-ERLSSLLPDAP--VVES--EGRSFPVEIRYLPLRGDQR---LE---DAVSRAVEHALASETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CH-HHHHHHcCCCc--EEEe--cCcceeeeeEEeecchhhh---HH---HHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 64 45788886432 3332 2344555555433221111 10 00111122211 2368899999999999999
Q ss_pred HHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 000129 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2114)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2114)
+..|..... .+..|..+||+|++++|..+++.|++|..+|||||++++
T Consensus 226 ~~~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAE 273 (819)
T TIGR01970 226 QEQLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAE 273 (819)
T ss_pred HHHHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHh
Confidence 877743110 123588999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEE-e---eeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1671 WGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1671 ~Gvdip~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
+|||+|++.+||- | ...||...+. ..++|.+++.||+|||||. .+|.||.++++.+...+.. ...
T Consensus 274 rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~~l~~----~~~ 346 (819)
T TIGR01970 274 TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQRLPA----QDE 346 (819)
T ss_pred hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHHhhhc----CCC
Confidence 9999999999992 2 2356655332 3467899999999999995 7999999998754333222 222
Q ss_pred CCCc--------------cccCC-CccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHH
Q 000129 1743 PNYY--------------NLQGV-SHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERF 1807 (2114)
Q Consensus 1743 P~~y--------------~l~~~-s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f 1807 (2114)
|... ++.+. ...-++....+.++.++..|...|+|+.+ -..|++|+.++.++++|...+++
T Consensus 347 PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~----~~lT~~G~~~~~lp~~p~l~~~l 422 (819)
T TIGR01970 347 PEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQ----GRLTAHGKAMAALGCHPRLAAML 422 (819)
T ss_pred cceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCC----CCcCHHHHHHHhcCCCHHHHHHH
Confidence 3222 11110 00111222346789999999999999532 25799999999999999999999
Q ss_pred HhhcCCC
Q 000129 1808 SSSLTPK 1814 (2114)
Q Consensus 1808 ~~sl~~~ 1814 (2114)
+.+....
T Consensus 423 l~~~~~~ 429 (819)
T TIGR01970 423 LSAHSTG 429 (819)
T ss_pred HHhhhcC
Confidence 8764433
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=385.78 Aligned_cols=358 Identities=28% Similarity=0.429 Sum_probs=282.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+-++|++++..+-. +++|+||||||||||++++.|+...+.. +. +++|++|.+||.+|.++++..+|++. .-
T Consensus 119 ~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 119 ELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred CcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 689999999988855 6779999999999999999999988877 45 79999999999999999999999864 33
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~ 1499 (2114)
.++.+|||.+.+ ..+.++|+|.|.+-+++.+ ....+..+..||+||+|.+++ ++|.++|.++- .++
T Consensus 192 ~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~lP 258 (1041)
T COG4581 192 MVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-------LLP 258 (1041)
T ss_pred hccceecceeeC----CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHH-------hcC
Confidence 478999998877 5678999999999888877 456789999999999999998 68999999874 247
Q ss_pred CCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEeccc-------c------cchHHHHHhcC-----
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVD-------I------TNFEARMQAMT----- 1560 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~-------~------~~~~~~~~~~~----- 1560 (2114)
..+++|+||||++|+.+|++|++... ..++......||+|++.++..-. . ..+........
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 78999999999999999999998653 45667788999999998875431 0 11110000000
Q ss_pred ----HH---------------------HHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCc
Q 000129 1561 ----KP---------------------TFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2114)
Q Consensus 1561 ----~~---------------------~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (2114)
.+ ....+..++ ...-|+|+|+=|++.|+..+..+...-.... .+.
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~--------~~~ 410 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT--------EEK 410 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC--------CcH
Confidence 00 000111111 3456899999999999999987753221111 112
Q ss_pred cc-chhhH----hhh---------hHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcE
Q 000129 1614 EE-VEPFI----DNI---------QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL 1679 (2114)
Q Consensus 1614 ~~-l~~~~----~~i---------~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~ 1679 (2114)
+. +..++ ..+ .-..+...+..|+++||+||-+..|..|+.+|..|-++|++||.+++.|+|.|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 22221 112 12445678889999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
+|+.+.++|+|..++ +.+..+|.||.|||||.|.|..|.++++....
T Consensus 491 vv~~~l~K~dG~~~r--~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 491 VVFTSLSKFDGNGHR--WLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeeeEEecCCcee--ecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999998664 56899999999999999999999999995544
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=337.52 Aligned_cols=335 Identities=19% Similarity=0.315 Sum_probs=254.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||.+|+|||+++.|.+|.+.+ ++.+|.||+|||++|++|-+-++.......+ +..++.+|+++||++|+.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 5999999999999999988877 9999999999999999998776654332222 345678999999999999998887
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
.+. ..-|.+..+++|+.+...+ ...+..|+++||+++ |+..... ..+..+-++|+|||+.|+| ++.|.+..
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~---i~l~siTYlVlDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV---INLASITYLVLDEADRMLDMGFEPQIRK 390 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe---eeeeeeEEEEecchhhhhcccccHHHHH
Confidence 764 3447777777776665543 246889999999998 4443332 5678899999999999999 78888877
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccccc---ceeEEEeeccCchhHHHHHhhHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
|+-. ..++.|.++.|||-|. .+.+........++.++..+.--+. +.|.++ ++.. ..++..+.
T Consensus 391 illd-------iRPDRqtvmTSATWP~--~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~~d--~~k~~~~~-- 456 (629)
T KOG0336|consen 391 ILLD-------IRPDRQTVMTSATWPE--GVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VTTD--SEKLEIVQ-- 456 (629)
T ss_pred Hhhh-------cCCcceeeeecccCch--HHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-eccc--HHHHHHHH--
Confidence 6554 3678999999999984 4544444444555666655544332 233332 2222 22222222
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
..+..+....++||||.++-.|..+...|+-.++.... +||
T Consensus 457 --~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~-------------------------------------lHG 497 (629)
T KOG0336|consen 457 --FFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQS-------------------------------------LHG 497 (629)
T ss_pred --HHHHhcCCCceEEEEEechhhhhhccchhhhcccchhh-------------------------------------ccC
Confidence 22334555779999999998887777666655444332 399
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
+-.+.+|+..++.|++|.++|||||+++++|+|+|++++|++ ||.+. .+.+|+||+||+||+| ..|.+
T Consensus 498 ~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~s 565 (629)
T KOG0336|consen 498 NREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGTS 565 (629)
T ss_pred ChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcce
Confidence 999999999999999999999999999999999999999999 77765 7889999999999998 78999
Q ss_pred EEEcCCCcHHHHHHh
Q 000129 883 IIITGHSELRYYLSL 897 (2114)
Q Consensus 883 iil~~~~e~~~~~~l 897 (2114)
+.+.+..+......+
T Consensus 566 is~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 566 ISFLTRNDWSMAEEL 580 (629)
T ss_pred EEEEehhhHHHHHHH
Confidence 999888876655543
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=383.64 Aligned_cols=333 Identities=17% Similarity=0.287 Sum_probs=244.8
Q ss_pred ccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
...+....++..| ||..|+|+|.++++.+++++ ++++++|||||||+||++|++.. .+ .+|||+|+++|+
T Consensus 9 ~~~~~~~~l~~~f-G~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~------~g--~tlVisPl~sL~ 78 (607)
T PRK11057 9 LESLAKQVLQETF-GYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL------DG--LTLVVSPLISLM 78 (607)
T ss_pred chhHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc------CC--CEEEEecHHHHH
Confidence 3444455666666 59999999999999999865 59999999999999999999832 34 789999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHH--HHhhhcccccccceeEEEecccc
Q 000129 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~--l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
.|++..++. + |+.+..+.+....+. ..+ ...+++++||+++.. +... ....++++|||||||
T Consensus 79 ~dqv~~l~~-~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH 149 (607)
T PRK11057 79 KDQVDQLLA-N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHH-c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCcc
Confidence 999998873 2 677777777655431 112 234899999999752 2222 223478999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccch
Q 000129 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1475 ~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~ 1552 (2114)
++.++ |..+...+.++..+...+ ++.+++++|||+++. .++..+++.....++ .....||. +...+.. ...
T Consensus 150 ~i~~~-G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~n-l~~~v~~--~~~- 222 (607)
T PRK11057 150 CISQW-GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPN-IRYTLVE--KFK- 222 (607)
T ss_pred ccccc-cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCc-ceeeeee--ccc-
Confidence 99754 344444444454444333 478899999999774 367777765543222 22222332 1111110 000
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.. ......+ .. ..++++||||+|+++|+.++..|.. .
T Consensus 223 --~~----~~l~~~l-~~-~~~~~~IIFc~tr~~~e~la~~L~~-----------------------------------~ 259 (607)
T PRK11057 223 --PL----DQLMRYV-QE-QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------R 259 (607)
T ss_pred --hH----HHHHHHH-Hh-cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------C
Confidence 00 1111111 22 4567899999999999999977632 1
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+..+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++|| |++.|.+..+|+||+|||||
T Consensus 260 g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----------~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 260 GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----------EeCCCCCHHHHHHHhhhccC
Confidence 34589999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
. +..|.|++++...+...+++++
T Consensus 330 ~--G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 330 D--GLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred C--CCCceEEEEeCHHHHHHHHHHH
Confidence 8 5789999999988877777666
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=338.83 Aligned_cols=346 Identities=21% Similarity=0.288 Sum_probs=245.4
Q ss_pred CCCCCCHHHHHHHHHHHcC--------CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT--------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~--------~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
+++...|+|.++++.++.. ..++.|.||||||||+||.+||++.+.. ++-...|||+|+|+++|+.|++..
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc-CCccceEEEEEeeHHHHHHHHHHH
Confidence 5889999999999998641 3459999999999999999999999988 444557999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchh---hc-----cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLK---LL-----EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~---~l-----~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~- 1480 (2114)
|. ++....|+.|+.++|..+.... .. ...||+|+||++|..+++.. ....+++++++||||||+|++..
T Consensus 235 f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 235 FK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechHHHHHHHHH
Confidence 99 6777789999999998775421 11 23499999999999888863 34479999999999999987532
Q ss_pred C---chHHHHHHHHH------HHHhh------------------cCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecC
Q 000129 1481 G---PVLEVIVSRMR------YIASQ------------------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP 1532 (2114)
Q Consensus 1481 g---~~le~i~srl~------~i~~~------------------~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~ 1532 (2114)
. +.++..+..++ .+..+ +..+...+.+|||+.. +..+.++-- ....++...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~~v~ 391 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL-HIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc-CCCceEEee
Confidence 1 11111111111 00000 1123345666777653 223333211 111111111
Q ss_pred CCCCccCcEEEEecccccchHHH----HHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1533 PGVRPVPLEIHIQGVDITNFEAR----MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1533 ~~~rpv~l~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
. |. +..+..+..... .....++.+...+-+..+..++|+|++|..++..++..|.-...
T Consensus 392 ~---~~-----~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~--------- 454 (620)
T KOG0350|consen 392 K---PL-----IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC--------- 454 (620)
T ss_pred c---cc-----ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc---------
Confidence 0 00 000111111110 01112333322222225678999999999999999877742211
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEe
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY 1688 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~y 1688 (2114)
.....+..+.|+++...|...++.|+.|.++|||||++++||+|+.++..||
T Consensus 455 ----------------------~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI------ 506 (620)
T KOG0350|consen 455 ----------------------SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI------ 506 (620)
T ss_pred ----------------------cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe------
Confidence 1223355688999999999999999999999999999999999999999999
Q ss_pred cCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHH
Q 000129 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
+|+.|.+...|+||+||++|+ +..|.|+.+....+...|.+++.
T Consensus 507 ----NYd~P~~~ktyVHR~GRTARA--gq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 507 ----NYDPPASDKTYVHRAGRTARA--GQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ----ecCCCchhhHHHHhhcccccc--cCCceEEEeeccccchHHHHHHH
Confidence 999999999999999999999 68999999999998888888883
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=383.27 Aligned_cols=329 Identities=19% Similarity=0.273 Sum_probs=250.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
.++..|. |.+|+|+|.++++.+++++ ++++++|||+|||+||++|++. ..+ .++||+|+++|+.|++..+
T Consensus 4 ~l~~~fg-~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~------~~g--~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTFG-YDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALL------LKG--LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhcC-CCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHH------cCC--cEEEEcCCHHHHHHHHHHH
Confidence 3555664 9999999999999999866 5999999999999999999873 234 7899999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+. + |+.+..++|+.+.+. ..+ ...+|+++||+++... .|.......++++|||||||++.. .|+.
T Consensus 74 ~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~~-~g~~ 145 (591)
T TIGR01389 74 RA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVSQ-WGHD 145 (591)
T ss_pred HH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCccccc-ccCc
Confidence 74 2 678888888776542 112 2458999999997532 222333456899999999999974 4566
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 1561 (2114)
++..+.++..+...++. .+++++|||.+.. .++..|++......+. .+..||. +...+... ... ..
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n-l~~~v~~~--~~~-------~~ 213 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPN-LRFSVVKK--NNK-------QK 213 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCC-cEEEEEeC--CCH-------HH
Confidence 66667777766665543 4599999998763 4788999876544443 2333432 22222111 010 01
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
.....+.. ..++++||||+|++.|+.++..|.. .+..++.+||
T Consensus 214 ~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~-----------------------------------~g~~~~~~H~ 256 (591)
T TIGR01389 214 FLLDYLKK--HRGQSGIIYASSRKKVEELAERLES-----------------------------------QGISALAYHA 256 (591)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------CCCCEEEEEC
Confidence 12222222 2367899999999999999876632 2345789999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
+|+.++|..+++.|.+|.++|||||+++++|||+|++++|| |++.|.++.+|+||+|||||. +..|.|
T Consensus 257 ~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----------~~~~p~s~~~y~Q~~GRaGR~--G~~~~~ 324 (591)
T TIGR01389 257 GLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----------HYDMPGNLESYYQEAGRAGRD--GLPAEA 324 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----------EcCCCCCHHHHhhhhccccCC--CCCceE
Confidence 99999999999999999999999999999999999999999 899999999999999999997 578999
Q ss_pred EEEeecCcHHHHHHHHH
Q 000129 1722 VILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1722 iil~~~~~~~~~~~~lR 1738 (2114)
++++...+...++.++.
T Consensus 325 il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 325 ILLYSPADIALLKRRIE 341 (591)
T ss_pred EEecCHHHHHHHHHHHh
Confidence 99999888877776663
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=355.13 Aligned_cols=341 Identities=18% Similarity=0.256 Sum_probs=252.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC--------CCceEEEEEcccHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE--------TGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~--------~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
++..|||+|+-+|+.+..+++ +++||+||||||.+|++|++.++..... ...+++++++|||+||.|++++
T Consensus 93 ~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred cccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 699999999999999988777 9999999999999999999999887521 1247999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-C-CCchH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q-GGPVL 1484 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~-~g~~l 1484 (2114)
.+ +|.-..+++++..+|+.+.. ...-..++|+||||+++.+++.+ ....+++++++|+|||+.+.+ . .+|.+
T Consensus 172 a~-k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 AR-KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HH-hhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccH
Confidence 98 67766788999999986543 22345669999999999988876 456789999999999999888 3 46666
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH-HhcCCC--CceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE-WIGATS--HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~-wl~~~~--~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
..++.++.... ....|.++||||.+.. ..++. ++.... ..+-.+... ...+...+..+.......
T Consensus 249 r~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~--~~ni~q~i~~V~~~~kr~------ 317 (482)
T KOG0335|consen 249 RKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST--SENITQKILFVNEMEKRS------ 317 (482)
T ss_pred HHHhcccCCCC---ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc--cccceeEeeeecchhhHH------
Confidence 66655443221 2468999999999752 22322 332210 001111111 111111222111111111
Q ss_pred HHHHHHHHHHh--cCCC-----CEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1561 KPTFTAIVQHA--KNEK-----PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1561 ~~~~~~i~~~l--~~~~-----~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.++..+.... ...+ .++|||.|++.|..++..|.. ..
T Consensus 318 -~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~-----------------------------------~~ 361 (482)
T KOG0335|consen 318 -KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS-----------------------------------NG 361 (482)
T ss_pred -HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc-----------------------------------CC
Confidence 1111111110 0122 699999999999998876632 23
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
+....+|+..++.+|...++.|++|.+.|||||++++||+|+|+|.+|| +|++|..+.+|+||+||+||.
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVI----------nyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVI----------NYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeE----------EeecCcchhhHHHhccccccC
Confidence 4467799999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCCceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1714 LLDNSGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
+..|.++.|+........+.+.+++.
T Consensus 432 --Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 432 --GNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred --CCCceeEEEeccccchhHHHHHHHHH
Confidence 68999999999877776666665443
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=382.91 Aligned_cols=391 Identities=16% Similarity=0.173 Sum_probs=274.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
.++.++++.||||||||+++.+++++.... .+ +++|++|||++|.|+++++.+.++...|..|+..++..+..
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~-- 90 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV-- 90 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc--
Confidence 446679999999999999999999975322 34 89999999999999999998788877788888777654321
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
-.+.+|+|+||+++..++.. ...++++++||+||+|...-.. ...+..++.+...++.+.|+|+||||++.
T Consensus 91 -~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~~----Dl~L~ll~~i~~~lr~~lqlilmSATl~~- 161 (812)
T PRK11664 91 -GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQA----DLALALLLDVQQGLRDDLKLLIMSATLDN- 161 (812)
T ss_pred -CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcccccc----chHHHHHHHHHHhCCccceEEEEecCCCH-
Confidence 13458999999998777654 4579999999999999532111 11233333444445678999999999954
Q ss_pred hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHH
Q 000129 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVD 1593 (2114)
Q Consensus 1515 ~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~ 1593 (2114)
..+.++++... ++.. ..+..|++.++........ .. ......+...+ ...+.+|||||++++++.++..
T Consensus 162 ~~l~~~~~~~~--~I~~--~gr~~pV~~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 162 DRLQQLLPDAP--VIVS--EGRSFPVERRYQPLPAHQR---FD---EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred HHHHHhcCCCC--EEEe--cCccccceEEeccCchhhh---HH---HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 56788876432 2322 2344556655443221111 10 01111222222 2468899999999999999977
Q ss_pred HHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccc
Q 000129 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gv 1673 (2114)
|..... .+..|..+||+|+..+|..+++.|++|+.+|||||+++++||
T Consensus 232 L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 232 LASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 743110 123488899999999999999999999999999999999999
Q ss_pred CCCCcEEEEE-e---eeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhccCCCC
Q 000129 1674 PLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNY 1745 (2114)
Q Consensus 1674 dip~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~nP~~ 1745 (2114)
|+|++.+||- | ...||...+. ..++|.++|.||+|||||. ..|.||.++++.....+. -...|..
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~~l~----~~~~PEI 352 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAERAA----AQSEPEI 352 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHhhCc----cCCCCce
Confidence 9999999993 2 2346665443 2367889999999999995 699999999865433211 1111211
Q ss_pred c--------------cccCCC-ccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhh
Q 000129 1746 Y--------------NLQGVS-HRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSS 1810 (2114)
Q Consensus 1746 y--------------~l~~~s-~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~s 1810 (2114)
. ++.+.. ..-++....+.++.++..|...|+|+- +...|++|+.|+.++++|...++++.+
T Consensus 353 ~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~----~g~lT~~G~~m~~lp~~Prla~~ll~a 428 (812)
T PRK11664 353 LHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDG----QGRLTARGRKMAALGNDPRLAAMLVAA 428 (812)
T ss_pred eccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCC----CCCcCHHHHHHHhcCCchHHHHHHHHH
Confidence 1 111100 011112234689999999999999953 236899999999999999999999876
Q ss_pred cCCC
Q 000129 1811 LTPK 1814 (2114)
Q Consensus 1811 l~~~ 1814 (2114)
....
T Consensus 429 ~~~~ 432 (812)
T PRK11664 429 KEDD 432 (812)
T ss_pred HhcC
Confidence 5433
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=354.16 Aligned_cols=367 Identities=19% Similarity=0.246 Sum_probs=257.1
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---------C
Q 000129 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---------E 1387 (2114)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---------~ 1387 (2114)
|+..|.--.|+.+.++++-. ||..|++||+.+++.+..+..+++-.|.||||||++|-+||+..+.... .
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 33333333456677788754 8999999999999999998777999999999999999999998554421 1
Q ss_pred CCceE--EEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhcc-ccc
Q 000129 1388 TGVMR--AVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQ-RKY 1461 (2114)
Q Consensus 1388 ~~~~k--~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~-~~~ 1461 (2114)
...++ +||++|||+||.|+.+.+. ......++++..++|+.... .+.++ .++|+|+|||+|..++..... -..
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~-ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLK-AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHH-HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 11234 9999999999999999998 56677899999999998764 33443 559999999999888875333 236
Q ss_pred ccceeEEEecccccccCCCCchHHHHHHHHHHHH-hhcCCCceEEEEcccCCChh--HHHHHhcCCCCc---------ee
Q 000129 1462 VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA-SQVENKIRIVALSTSLANAK--DLGEWIGATSHG---------LF 1529 (2114)
Q Consensus 1462 l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~-~~~~~~~riV~lSATl~n~~--dla~wl~~~~~~---------~~ 1529 (2114)
++++.++|+||+|++...+ .++.+-..++.+. .+.....|.+.+|||+.-.. .+..-....... ++
T Consensus 338 ~k~vkcLVlDEaDRmvekg--hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKG--HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhceEEEEccHHHHhhhc--cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 8899999999999998654 2333333333333 34456789999999985321 111111000000 00
Q ss_pred -ecCCCCCccCcEEEEecccccchHHHHHhc---CHHH--HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1530 -NFPPGVRPVPLEIHIQGVDITNFEARMQAM---TKPT--FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1530 -~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~---~~~~--~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...-...|.-+....+.............. .+.. |-.+. .-.+.+|||||+...+..++-.|.
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~-------- 484 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLN-------- 484 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe---ecCCceEEEechHHHHHHHHHHHh--------
Confidence 000001111111110000000000000000 0000 00111 125789999999998888775542
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEE
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~ 1683 (2114)
.+...-..+|+.|.+..|..-++.|++..-.|||||++++||+|||++.+||
T Consensus 485 ---------------------------~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI- 536 (731)
T KOG0347|consen 485 ---------------------------NLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI- 536 (731)
T ss_pred ---------------------------hcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE-
Confidence 2334456799999999999999999999999999999999999999999999
Q ss_pred eeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
||.+|.+..-|+||.||+.|+ ...|..++||.+.+...|+++-
T Consensus 537 ---------HYqVPrtseiYVHRSGRTARA--~~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 537 ---------HYQVPRTSEIYVHRSGRTARA--NSEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred ---------EeecCCccceeEecccccccc--cCCCeEEEEeChHHhHHHHHHH
Confidence 999999999999999999999 7899999999998877777655
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=331.21 Aligned_cols=346 Identities=17% Similarity=0.267 Sum_probs=256.6
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc----cCCCceEEEEEcccHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~----~~~~~~k~l~I~Ptr~La~ 1404 (2114)
+.++++-+ ||..|+|||+|+.|.++++.+ ++..|.||+|||++|++|-+-++... ....++.+|++.|||+|+.
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLal 308 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELAL 308 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHH
Confidence 44556655 899999999999999999877 99999999999999999988776543 1233568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+.-..+ ++.- -|.+.+++.|+-+.+ ...++++ +||++||++|..+... ...++.++.++|+||||.+++.+
T Consensus 309 qie~e~~-kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg- 383 (629)
T KOG0336|consen 309 QIEGEVK-KYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG- 383 (629)
T ss_pred HHHhHHh-Hhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc-
Confidence 9988777 3433 366666666665544 3445544 9999999999888765 45679999999999999999876
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
+-..++.+.-...++.|+++.|||-|. .+.++.-.-..+..+++ .+..-+...-.-+.+-.++-....
T Consensus 384 -----FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v--GsLdL~a~~sVkQ~i~v~~d~~k~---- 452 (629)
T KOG0336|consen 384 -----FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV--GSLDLVAVKSVKQNIIVTTDSEKL---- 452 (629)
T ss_pred -----ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe--cccceeeeeeeeeeEEecccHHHH----
Confidence 444455555555789999999999987 34566533333322222 222211111111111111111111
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
.....+....+...++||||.++..|..+..+++- -+.....+|
T Consensus 453 -~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-----------------------------------~gi~~q~lH 496 (629)
T KOG0336|consen 453 -EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL-----------------------------------KGISSQSLH 496 (629)
T ss_pred -HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-----------------------------------cccchhhcc
Confidence 22344445557888999999999877666655521 122356689
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+-++.||+..++.|++|.++|||||++++||+|+|++++|+ +|++|.++.+|+||+||+||+ +..|.
T Consensus 497 G~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~----------NyDFP~nIeeYVHRvGrtGRa--Gr~G~ 564 (629)
T KOG0336|consen 497 GNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY----------NYDFPRNIEEYVHRVGRTGRA--GRTGT 564 (629)
T ss_pred CChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----------ccCCCccHHHHHHHhcccccC--CCCcc
Confidence 999999999999999999999999999999999999999999 999999999999999999999 68999
Q ss_pred EEEEeecCcHHHHHHHHHhc
Q 000129 1721 CVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~ 1740 (2114)
++.+....+....+.++.++
T Consensus 565 sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred eEEEEehhhHHHHHHHHHHH
Confidence 99999988877777666443
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=338.62 Aligned_cols=345 Identities=23% Similarity=0.314 Sum_probs=246.8
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~--------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
.+++.+.|+|..+++.++.. ..++.|.||||||||++|.+||++.+.... .+..++|+|+|+++|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEEEEEeeHHHH
Confidence 57899999999999988642 236999999999999999999999987653 234799999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCccChhhh--------ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 563 a~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~--------~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+.|++..|.++....|+.|+.++|..++..+.. ...+|+|+||+++ |+|..-.+ ..+++++++||||||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999988876532 2349999999998 77765332 678999999999999
Q ss_pred cccc-CCchhHHHHHHHH------------HHHHh---------------hccccccEEEEccccCC-hHHHHHHHhccc
Q 000129 634 LLHD-NRGPVLESIVART------------VRQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl------------~~~~~---------------~~~~~~riv~lSATlpn-~~dva~~l~~~~ 684 (2114)
+|++ .|..-+..++..+ ++... ...+....+.+|||+.. +..+.++--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 3333333222221 11110 01123345677888753 333333322111
Q ss_pred cCceEeec----CCcc-cccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhc
Q 000129 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (2114)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2114)
.++... ..|+ |..+....+.....-.. ..+|. ........++|+|++|...+.+++..|.-...+
T Consensus 386 --rl~~v~~~~~~ryslp~~l~~~~vv~~~~~kp-------l~~~~-lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 --RLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKP-------LAVYA-LITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred --ceEEeecccceeeecChhhhhceeecccccch-------HhHHH-HHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 122221 2222 22233332222211000 11222 333445679999999999999999988732111
Q ss_pred ccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCce
Q 000129 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (2114)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (2114)
. ...+..+.|+++...|...++.|+.|.++|||||++++||+|+-++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 0 0112334899999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhc
Q 000129 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 840 ~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~ 899 (2114)
++||+ ||++- +...|+||+||+||+| ..|.||.+....+...+.++++
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHH
Confidence 99999 88774 7889999999999998 6699999998888777777654
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=335.03 Aligned_cols=338 Identities=19% Similarity=0.254 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|..+...+ +|+.+|||||.+-+|.++.+++ +|-.|-||||||++|.||++-........-.-....++..++|+|+
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPS 255 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPS 255 (610)
T ss_pred CCHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCc
Confidence 355555555 7999999999999999998877 9999999999999999998765543221111223457789999999
Q ss_pred HHHHHHHHHHHHHhhccC------CcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEE
Q 000129 560 KALVAEVVGNLSNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLII 629 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~------gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIi 629 (2114)
|+||.|.+.-+..++..+ .++...+.|+.+...+. ..+.+|+|+||+++ |++.++. ..+.-++++.+
T Consensus 256 RELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~---~sLd~CRyL~l 332 (610)
T KOG0341|consen 256 RELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI---MSLDACRYLTL 332 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh---ccHHHHHHhhh
Confidence 999999998877765432 36788889998876653 46899999999998 8888776 35677899999
Q ss_pred eccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeec
Q 000129 630 DEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708 (2114)
Q Consensus 630 DEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~ 708 (2114)
|||++|.| ++...+..|+..+ ....|.+++|||+| ..+..|.+..+.+++.+-.+.--...+..
T Consensus 333 DEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP--~KIQ~FAkSALVKPvtvNVGRAGAAsldV------ 397 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMP--KKIQNFAKSALVKPVTVNVGRAGAASLDV------ 397 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHH-------hhhhheeeeecccc--HHHHHHHHhhcccceEEecccccccchhH------
Confidence 99999999 6877777777665 34567899999999 66777777655443322222111111110
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCc
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 786 (2114)
-........-++++| +++... ..|+||||..+..+..+..+|.-++...
T Consensus 398 -iQevEyVkqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEa-------------------------- 448 (610)
T KOG0341|consen 398 -IQEVEYVKQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEA-------------------------- 448 (610)
T ss_pred -HHHHHHHHhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHcccee--------------------------
Confidence 000011111122222 233333 5699999999999999998887666543
Q ss_pred chhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHH
Q 000129 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2114)
Q Consensus 787 ~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2114)
...|||-.+++|....+.|+.|+-+|||||++++.|+|+|++.+||| ||.+. .+.+|+|
T Consensus 449 -----------vaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIENYVH 507 (610)
T KOG0341|consen 449 -----------VAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIENYVH 507 (610)
T ss_pred -----------EEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHHHHH
Confidence 33499999999999999999999999999999999999999999999 66554 5778999
Q ss_pred hhcccCCCCCCCceEEEEEcCCCc
Q 000129 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|+||+||.| +.|.+..+.+...
T Consensus 508 RIGRTGRsg--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 508 RIGRTGRSG--KTGIATTFINKNQ 529 (610)
T ss_pred HhcccCCCC--Ccceeeeeecccc
Confidence 999999988 7899988887643
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=335.20 Aligned_cols=334 Identities=19% Similarity=0.282 Sum_probs=259.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..|.+++|+|-+++|.++.+.+ |+-.|-||||||.+|+.|++-+++.... -....++..||++|||+||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~e---L~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPE---LKPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhh---hcCCCCCeEEEEeccHHHHHHHHHHH
Confidence 3588999999999999998877 9999999999999999999998876432 11236789999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++.-+. ..+.++.++||||++.|.+ ++-+...+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999998877653 36899999999997 7777665 4678899999999999998 68777777
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcc--cccceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|...+ .++.|.+++|||++- .+....+..+..++-....+.- ...+.|.+..+ .....+++. +
T Consensus 394 I~~hi-------rpdrQtllFsaTf~~--kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~--~s~~~Kl~w----l 458 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFKK--KIEKLARDILSDPVRVVQGEVGEANEDITQTVSVC--PSEEKKLNW----L 458 (731)
T ss_pred HHhhc-------CCcceEEEeeccchH--HHHHHHHHHhcCCeeEEEeehhccccchhheeeec--cCcHHHHHH----H
Confidence 76554 688999999999873 3333333222222222222111 11223322222 122233322 2
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
...+.+....+++||||.-+..+++++..|.-.+ +.|+..||.
T Consensus 459 ~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-------------------------------------~~v~llhgd 501 (731)
T KOG0339|consen 459 LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-------------------------------------FNVSLLHGD 501 (731)
T ss_pred HHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-------------------------------------ceeeeecCc
Confidence 2334455557899999999999999998886544 346677999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|.+.+|..++..|+.+...|||+|+++++|+|+|.+..||+ ||... ++..+.||+||+||.| ..|.+|
T Consensus 502 kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGvay 569 (731)
T KOG0339|consen 502 KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVAY 569 (731)
T ss_pred hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--ccceee
Confidence 99999999999999999999999999999999999999999 77654 7788999999999998 569999
Q ss_pred EEcCCCcHHHHH
Q 000129 884 IITGHSELRYYL 895 (2114)
Q Consensus 884 il~~~~e~~~~~ 895 (2114)
.+.++.+..+.-
T Consensus 570 TlvTeKDa~fAG 581 (731)
T KOG0339|consen 570 TLVTEKDAEFAG 581 (731)
T ss_pred EEechhhHHHhh
Confidence 999988766443
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=324.15 Aligned_cols=350 Identities=18% Similarity=0.235 Sum_probs=258.6
Q ss_pred CCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHc-CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC
Q 000129 1312 PPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389 (2114)
Q Consensus 1312 ~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~-~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~ 1389 (2114)
|.+|+.....+.--.|+.+.+..+|. +|..|+.||..++|.++. ..+|+|..+..|+|||.||.|.+|.+....- .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~ 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--V 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--c
Confidence 55667777777777788889999997 899999999999999875 5689999999999999999999998876632 3
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEE
Q 000129 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (2114)
Q Consensus 1390 ~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liI 1469 (2114)
.|.++||+|+|+||.|+.+.+. ..|+..++++....-+........-..+|+|+||+.+..++.+.+ ...++.+..+|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEE
Confidence 3489999999999999999998 688877777766655443222222244899999999988877643 34688999999
Q ss_pred ecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCCCccCcEEEEeccc
Q 000129 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2114)
Q Consensus 1470 iDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~ 1548 (2114)
+|||+.+.+.+|.. ..-..|...++++.|++++|||..... .++.-+-.....++. .-....
T Consensus 238 lDEAD~Mi~tqG~~-----D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~L------------k~eel~ 300 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQ-----DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIIL------------KREELA 300 (477)
T ss_pred ecchhhhhhccccc-----ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeee------------ehhhcc
Confidence 99999877655321 111122333478999999999986532 444433222211111 100001
Q ss_pred ccchHHHH--HhcCHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhh
Q 000129 1549 ITNFEARM--QAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (2114)
Q Consensus 1549 ~~~~~~~~--~~~~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (2114)
........ .......|..+.... ..-+++||||.|++.|..++..+..
T Consensus 301 L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~---------------------------- 352 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA---------------------------- 352 (477)
T ss_pred ccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh----------------------------
Confidence 11111110 011122344443321 2457899999999999999877633
Q ss_pred HHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC------
Q 000129 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY------ 1698 (2114)
Q Consensus 1625 d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~------ 1698 (2114)
.++.|..+||.|..++|..+.+.|+.|.-+|||+|++++||+|++.+.+|| +|+.|.
T Consensus 353 -------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv----------NydlP~~~~~~p 415 (477)
T KOG0332|consen 353 -------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV----------NYDLPVKYTGEP 415 (477)
T ss_pred -------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE----------ecCCccccCCCC
Confidence 366799999999999999999999999999999999999999999999999 665553
Q ss_pred CHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1699 PVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1699 s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+...|+||+||+||- ++.|.++-|+++.+
T Consensus 416 D~etYlHRiGRtGRF--GkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 416 DYETYLHRIGRTGRF--GKKGLAINLVDDKD 444 (477)
T ss_pred CHHHHHHHhcccccc--cccceEEEeecccC
Confidence 578999999999995 89999999998765
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=379.53 Aligned_cols=441 Identities=17% Similarity=0.174 Sum_probs=279.3
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcE
Q 000129 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVK 580 (2114)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~ 580 (2114)
+.|..++.+++.++|+|+||||||+. +|.+.... +. | ...+|++..|.|-.|.+++.++.+-++ .+|-.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~-g~---g----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL-GR---G----VKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc-CC---C----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 44555677778899999999999995 55322111 11 1 122677788976544444444444332 23333
Q ss_pred EEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc-ccc-CCchhHHHHHHHHHHHHhhc
Q 000129 581 VRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 581 v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~rl~~~~~~~ 657 (2114)
|+.- ..++.+....++|+|+||+++ +.+.+ ...++.+++|||||||. +.+ ++ +..++.++ + ..
T Consensus 150 VGY~---vrf~~~~s~~t~I~v~TpG~LL~~l~~----d~~Ls~~~~IIIDEAHERsLn~Df---LLg~Lk~l---L-~~ 215 (1294)
T PRK11131 150 VGYK---VRFNDQVSDNTMVKLMTDGILLAEIQQ----DRLLMQYDTIIIDEAHERSLNIDF---ILGYLKEL---L-PR 215 (1294)
T ss_pred ecee---ecCccccCCCCCEEEEChHHHHHHHhc----CCccccCcEEEecCccccccccch---HHHHHHHh---h-hc
Confidence 3322 233333345799999999986 33332 24689999999999994 443 22 11222222 1 22
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCch---hHHHHHhhHHHHHHHHHHhCCC
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP---LQRFQLMNDLCYEKVVAVAGKH 734 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~ 734 (2114)
.++.|+|+||||++ .+.+++++.. .+++...+...| +...|........ ...+..+...+.. + .....+
T Consensus 216 rpdlKvILmSATid-~e~fs~~F~~---apvI~V~Gr~~p--Vei~y~p~~~~~~~~~~d~l~~ll~~V~~-l-~~~~~G 287 (1294)
T PRK11131 216 RPDLKVIITSATID-PERFSRHFNN---APIIEVSGRTYP--VEVRYRPIVEEADDTERDQLQAIFDAVDE-L-GREGPG 287 (1294)
T ss_pred CCCceEEEeeCCCC-HHHHHHHcCC---CCEEEEcCcccc--ceEEEeecccccchhhHHHHHHHHHHHHH-H-hcCCCC
Confidence 45789999999985 5677777653 234444443334 4444443322111 1111111111111 1 122367
Q ss_pred eEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHH
Q 000129 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814 (2114)
Q Consensus 735 ~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~ 814 (2114)
++||||+++.++..++..|...+... ..|..+||+|+..+|..+++
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~----------------------------------~~VlpLhg~Ls~~eQ~~Vf~ 333 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRH----------------------------------TEILPLYARLSNSEQNRVFQ 333 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCc----------------------------------ceEeecccCCCHHHHHHHhc
Confidence 89999999999999999987643211 12566799999999999988
Q ss_pred HHhCCCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEc
Q 000129 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 815 ~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2114)
. .|..+|||||+++++|||+|++++||+.+ ..||+.+|.. .++|..+|.||+|||||. ..|.||.++
T Consensus 334 ~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLy 408 (1294)
T PRK11131 334 S--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLY 408 (1294)
T ss_pred c--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeC
Confidence 6 57899999999999999999999999964 5688876532 567889999999999997 479999999
Q ss_pred CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhh
Q 000129 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGE 966 (2114)
Q Consensus 887 ~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~ 966 (2114)
+..+.. ++-....| .-+...|...+..-..+| + .++..+ +.++.
T Consensus 409 te~d~~---~~~~~~~P--EIlR~~L~~viL~lk~lg-l--------------------~di~~F----------~fldp 452 (1294)
T PRK11131 409 SEDDFL---SRPEFTDP--EILRTNLASVILQMTALG-L--------------------GDIAAF----------PFVEA 452 (1294)
T ss_pred CHHHHH---hhhcccCC--ccccCCHHHHHHHHHHcC-C--------------------CCccee----------eCCCC
Confidence 875533 22111111 111112222221111111 1 111111 11222
Q ss_pred hhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCCh
Q 000129 967 RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (2114)
Q Consensus 967 ~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~ 1046 (2114)
+-.+.|..|+..|...|+|+.+..++...+|++|+.||.+|++|...++++.+...+|. .+++.|.|+-+. .+...|+
T Consensus 453 P~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Lsv-~dpf~~p 530 (1294)
T PRK11131 453 PDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALSI-QDPRERP 530 (1294)
T ss_pred CCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcccCC
Confidence 33467899999999999998654334568999999999999999999999998877776 677777666543 4666777
Q ss_pred hHHHH
Q 000129 1047 DEKME 1051 (2114)
Q Consensus 1047 ~e~~~ 1051 (2114)
.++.+
T Consensus 531 ~~~~~ 535 (1294)
T PRK11131 531 MDKQQ 535 (1294)
T ss_pred chhHH
Confidence 66654
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=329.74 Aligned_cols=342 Identities=21% Similarity=0.297 Sum_probs=266.1
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc---cCCCceEEEEEcccHHHHH
Q 000129 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1329 ~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~---~~~~~~k~l~I~Ptr~La~ 1404 (2114)
...+..+.. .|..++|+|.++++..+.+.+ |+-.|-||||||.+|..|++-++... .++.+|..||++|||+||.
T Consensus 232 kqLm~airk~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~ 310 (731)
T KOG0339|consen 232 KQLMTAIRKSEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELAS 310 (731)
T ss_pred HHHHHHHhhhhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHH
Confidence 344555544 499999999999999998777 99999999999999999999998764 2355679999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch--hhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|++.+.+ +|++..|++++.++|+.+.+. +.+ ..+.||||||+++..++.- ....+.++.++|+||++++.+.+
T Consensus 311 Qi~~eaK-kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdmG- 386 (731)
T KOG0339|consen 311 QIFSEAK-KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDMG- 386 (731)
T ss_pred HHHHHHH-HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhccc-
Confidence 9999998 798888999999999887763 233 4569999999999888875 34579999999999999998877
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHH-HhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhc
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~-wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 1559 (2114)
+...++.|..+..++.|.++||||++- .+.+++ +|+.+ . |.|..++.-....+......+ ..
T Consensus 387 -----fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dp-V---------rvVqg~vgean~dITQ~V~V~-~s 450 (731)
T KOG0339|consen 387 -----FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDP-V---------RVVQGEVGEANEDITQTVSVC-PS 450 (731)
T ss_pred -----cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCC-e---------eEEEeehhccccchhheeeec-cC
Confidence 777888888888999999999999964 233443 34322 1 222111111111111100000 00
Q ss_pred CHHHHHHHHHHh---cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1560 TKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1560 ~~~~~~~i~~~l---~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
....+..++.++ ...+++||||..+..++.++..|. .-++.|
T Consensus 451 ~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lk-----------------------------------lk~~~v 495 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLK-----------------------------------LKGFNV 495 (731)
T ss_pred cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhc-----------------------------------ccccee
Confidence 111122222222 456899999999999988886651 235679
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
..+||+|.+.+|..++..|+.+...|||+|+++++|+|+|.+..|| ++++-.++..+.||+||+||. +
T Consensus 496 ~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----------nyD~ardIdththrigrtgRa--g 563 (731)
T KOG0339|consen 496 SLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----------NYDFARDIDTHTHRIGRTGRA--G 563 (731)
T ss_pred eeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----------cccccchhHHHHHHhhhcccc--c
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999 5
Q ss_pred CceEEEEEeecCcHHHHHHHHH
Q 000129 1717 NSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
..|.++.++++.+.++.-.+++
T Consensus 564 ~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 564 EKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred ccceeeEEechhhHHHhhHHHH
Confidence 6799999999988876655553
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=368.59 Aligned_cols=313 Identities=18% Similarity=0.262 Sum_probs=231.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+...|+ | .+||+|.+|++.++++ ..+++++||||||||.+|++|++..+.. +. +++|++||++||.|+
T Consensus 444 ~~~~~~-f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 444 FEDSFP-F-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHhCC-C-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHH
Confidence 444443 7 5999999999999874 3579999999999999999999988765 34 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
++.|++.|+. .++++..++|..+.. .+.+. ..+|||+||.. +. ....+++++++||||+|+++..
T Consensus 517 ~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~---~~v~f~~L~llVIDEahrfgv~ 588 (926)
T TIGR00580 517 FETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ---KDVKFKDLGLLIIDEEQRFGVK 588 (926)
T ss_pred HHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh---CCCCcccCCEEEeecccccchh
Confidence 9999987776 488999999876543 12222 45999999953 22 2346789999999999986421
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHH-hcCCCCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~w-l~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
....+ .....+.++++||||+. .+.+... .+.....++...|..| .++..++..+. .
T Consensus 589 -------~~~~L----~~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----~---- 646 (926)
T TIGR00580 589 -------QKEKL----KELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----P---- 646 (926)
T ss_pred -------HHHHH----HhcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----H----
Confidence 11222 23356789999999963 4444332 3433333444333333 23444333221 0
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
......+...+..+++++||||+++.+..++..|.... ....|+.
T Consensus 647 --~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~---------------------------------p~~~v~~ 691 (926)
T TIGR00580 647 --ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV---------------------------------PEARIAI 691 (926)
T ss_pred --HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC---------------------------------CCCeEEE
Confidence 12233444555678999999999999988886663311 1346899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCC
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++|| .++.| ++..+|.||+||+||. +.
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI----------i~~a~~~gls~l~Qr~GRvGR~--g~ 759 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII----------IERADKFGLAQLYQLRGRVGRS--KK 759 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE----------EecCCCCCHHHHHHHhcCCCCC--CC
Confidence 99999999999999999999999999999999999999998888 33333 4678999999999998 68
Q ss_pred ceEEEEEeecC
Q 000129 1718 SGKCVILCHAP 1728 (2114)
Q Consensus 1718 ~G~~iil~~~~ 1728 (2114)
.|.|++++...
T Consensus 760 ~g~aill~~~~ 770 (926)
T TIGR00580 760 KAYAYLLYPHQ 770 (926)
T ss_pred CeEEEEEECCc
Confidence 99999998754
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=324.90 Aligned_cols=338 Identities=19% Similarity=0.261 Sum_probs=248.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC----CCceEEEEEcccHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~----~~~~k~l~I~Ptr~ 1401 (2114)
|....++++-. ||..||-||+.||+.++++.+ ++..|.||||||.+|++|+++.+..... ..++.+++++|||+
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkE 104 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKE 104 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHH
Confidence 34455566655 899999999999999999775 9999999999999999999999876422 22468999999999
Q ss_pred HHHHHHHHHHHHhcCCC--CcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1402 LAKERYRDWEIKFGQGL--GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~--g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
||.|+|+.+. ++.... .+++.-++.+.+.. ......++|+|+||+++..++... ....+..++++|+||||++
T Consensus 105 L~qQvy~vie-kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~-~~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346|consen 105 LAQQVYKVIE-KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG-VLEYLDSLSFLVVDEADLL 182 (569)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc-cchhhhheeeEEechhhhh
Confidence 9999999988 444332 24454455433322 334567799999999988776542 1256888999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccC--cEEEEecccccchH
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVP--LEIHIQGVDITNFE 1553 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~--l~~~~~~~~~~~~~ 1553 (2114)
.+-+ +-..|+.+.+.+++..|.++||||+.+. ..+...+-..+ .+..+....-|.| +..+..... ..
T Consensus 183 lsfG------Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nP-viLkl~e~el~~~dqL~Qy~v~cs--e~- 252 (569)
T KOG0346|consen 183 LSFG------YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNP-VILKLTEGELPNPDQLTQYQVKCS--EE- 252 (569)
T ss_pred hhcc------cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCC-eEEEeccccCCCcccceEEEEEec--cc-
Confidence 8655 5566777778889999999999999652 23444333332 3444444443433 222221111 11
Q ss_pred HHHHhcCHHHHH-HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1554 ARMQAMTKPTFT-AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1554 ~~~~~~~~~~~~-~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.+.+.. ++++.---.+++||||||...|..+-..|. ..
T Consensus 253 ------DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLe-----------------------------------qF 291 (569)
T KOG0346|consen 253 ------DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLE-----------------------------------QF 291 (569)
T ss_pred ------hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHH-----------------------------------Hh
Confidence 111111 111111236889999999999977764442 23
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----------------------------------cccccCCCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS-----------------------------------MCWGVPLTA 1677 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~-----------------------------------la~Gvdip~ 1677 (2114)
+...+++.|.|+..-|-.+++.|..|..+++|||+. .+||||+..
T Consensus 292 GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~ 371 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHH 371 (569)
T ss_pred CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchh
Confidence 334578899999999999999999999999999981 569999999
Q ss_pred cEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
+..|+ |+++|.++..|+||+||++|+ +.+|.++.|+.+.+.
T Consensus 372 V~~Vl----------NFD~P~t~~sYIHRvGRTaRg--~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 372 VSNVL----------NFDFPETVTSYIHRVGRTARG--NNKGTALSFVSPKEE 412 (569)
T ss_pred eeeee----------ecCCCCchHHHHHhccccccC--CCCCceEEEecchHH
Confidence 99999 999999999999999999998 789999999987654
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=371.93 Aligned_cols=310 Identities=20% Similarity=0.248 Sum_probs=227.8
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.+| +||++|.+|++.++.+ ..++|+|||||||||.+|+++++..+..+ .+++|++||++||.|
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQVAVLVPTTLLAQQ 515 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeEEEEeCcHHHHHH
Confidence 357 5999999999999875 24699999999999999999999887643 389999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
+++.|++++..+++++..++|..+...+. .+.++|||+||. .+.+ ...++++++|||||+|+++
T Consensus 516 ~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~---ll~~----~v~f~~L~llVIDEahrfg-- 586 (926)
T TIGR00580 516 HFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK---LLQK----DVKFKDLGLLIIDEEQRFG-- 586 (926)
T ss_pred HHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH---HhhC----CCCcccCCEEEeecccccc--
Confidence 99999999999999999999976643321 135899999995 2322 2457889999999999853
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
......+ .....++++++||||+ ....+...+.... .............++...+.... . .
T Consensus 587 --v~~~~~L-------~~~~~~~~vL~~SATp-iprtl~~~l~g~~-d~s~I~~~p~~R~~V~t~v~~~~---~----~- 647 (926)
T TIGR00580 587 --VKQKEKL-------KELRTSVDVLTLSATP-IPRTLHMSMSGIR-DLSIIATPPEDRLPVRTFVMEYD---P----E- 647 (926)
T ss_pred --hhHHHHH-------HhcCCCCCEEEEecCC-CHHHHHHHHhcCC-CcEEEecCCCCccceEEEEEecC---H----H-
Confidence 2222222 2245678999999994 4455544332221 11111111111123333222111 1 1
Q ss_pred hhHHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 719 MNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 719 ~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+...+. +...+++++|||++++.+..++..|..... ...+
T Consensus 648 ---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v 689 (926)
T TIGR00580 648 ---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARI 689 (926)
T ss_pred ---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeE
Confidence 1111121 223478999999999999999888875321 1347
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
+.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. ++..+|+||+||+||.|
T Consensus 690 ~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g-- 758 (926)
T TIGR00580 690 AIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK-- 758 (926)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--
Confidence 88999999999999999999999999999999999999999999997 66543 36678999999999987
Q ss_pred CceEEEEEcCCC
Q 000129 878 SYGEGIIITGHS 889 (2114)
Q Consensus 878 ~~G~~iil~~~~ 889 (2114)
..|.||+++...
T Consensus 759 ~~g~aill~~~~ 770 (926)
T TIGR00580 759 KKAYAYLLYPHQ 770 (926)
T ss_pred CCeEEEEEECCc
Confidence 789999998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=323.70 Aligned_cols=341 Identities=18% Similarity=0.272 Sum_probs=250.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+..+. .||.+||-||+.|||-++++.+ ++..|-||||||.+|++|+++.+......+ ....++.+++++||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPT 102 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEech
Confidence 445555555 5999999999999999999875 999999999999999999999998765432 23456789999999
Q ss_pred HHHHHHHHHHHHHhhccC--CcEEEEEeCCCccChh---hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 560 KALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~--gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|+||+|++..+.++.... .+++.-++.+++.+.. ....++|+|+||.++ ..+.-.. ...+..+.++|+||||
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEechhh
Confidence 999999999998876544 3555555555544332 246899999999996 3333322 2577889999999999
Q ss_pred cccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EeecCCcc--cccceeEEEeecc
Q 000129 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYR--PVPLSQQYIGIQV 709 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~-~~f~~~~r--pv~l~~~~~~~~~ 709 (2114)
++.. ++...+..+. ...++..|.++||||+. +|+...-......++ .-+....- |-.+.|.++.+.+
T Consensus 181 LllsfGYeedlk~l~-------~~LPr~~Q~~LmSATl~--dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLR-------SHLPRIYQCFLMSATLS--DDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHH-------HhCCchhhheeehhhhh--hHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc
Confidence 9986 4444444333 34577889999999997 455544333222222 23333333 3456666665553
Q ss_pred CchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
... +.. +|..+.-..-.+++||||||...|.++--.|...|+...
T Consensus 252 ~DK---fll----lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksc---------------------------- 296 (569)
T KOG0346|consen 252 EDK---FLL----LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSC---------------------------- 296 (569)
T ss_pred chh---HHH----HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhh----------------------------
Confidence 322 211 222221122268999999999999999988887765542
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEech-----------------------------------Hhhhhc
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA-----------------------------------TLAWGV 834 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~-----------------------------------tla~GV 834 (2114)
+++|.|+..-|-.+++.|..|..+++|||+ -.+|||
T Consensus 297 ---------iLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 297 ---------ILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred ---------hhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 348999999999999999999999999999 147999
Q ss_pred CCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 835 dlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
|+..|..||| ||.+. +...|+||+||++|++ ++|.++-++.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 66554 6678999999999977 789999998886643
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=373.73 Aligned_cols=441 Identities=17% Similarity=0.184 Sum_probs=288.3
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000129 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2114)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v 581 (2114)
..|..++.+++.++|+||||||||+.....++.. +. + ...+|++..|.|--|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 4455667778889999999999999654433321 11 1 12378899999999999998888755 4556
Q ss_pred EEEeCC-CccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc-cccCCchhHHHHHHHHHHHHhhccc
Q 000129 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (2114)
Q Consensus 582 ~~l~Gd-~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~-l~d~rg~~le~iv~rl~~~~~~~~~ 659 (2114)
+...|. ..++.+...++.|+|+||+.+ ++.......++.+++|||||||. ..+ .+.++..+...+ ...+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il-~~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLL-PRRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHHHH-hhCC
Confidence 666662 344444456799999999975 33322335689999999999993 333 222222222222 2346
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCc---hhHHHHHhhHHHHHHHHHHhCCCeE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~v 736 (2114)
+.|+|+||||++ .+.+++++... +++...+...|+ ...|....... .......+...+.. +.. ...+++
T Consensus 211 dLKlIlmSATld-~~~fa~~F~~a---pvI~V~Gr~~PV--ev~Y~~~~~~~~~~~~~~~~~i~~~I~~-l~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATID-PERFSRHFNNA---PIIEVSGRTYPV--EVRYRPLVEEQEDDDLDQLEAILDAVDE-LFA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCcC-HHHHHHHhcCC---CEEEECCCcccc--eeEEecccccccchhhhHHHHHHHHHHH-HHh-hCCCCE
Confidence 889999999984 67788887532 344444433344 44443322111 11112222222222 111 136799
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHH
Q 000129 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2114)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2114)
|||+++++++..++..|...+.. ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999998764311 01256789999999999986654
Q ss_pred hCCCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+..+|||||+++++|||+|++++||+.+ ..||+.+|.. .++|..+|.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999965 4578776643 5689999999999999985 8999999987
Q ss_pred CcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhh
Q 000129 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (2114)
Q Consensus 889 ~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (2114)
.+... +.....| | -+...|...+..-...| + .++..+ +.++.+.
T Consensus 404 ~~~~~---~~~~~~P-E-IlR~~L~~viL~l~~lg-~--------------------~di~~f----------~fldpP~ 447 (1283)
T TIGR01967 404 EDFNS---RPEFTDP-E-ILRTNLASVILQMLALR-L--------------------GDIAAF----------PFIEAPD 447 (1283)
T ss_pred HHHHh---hhhccCc-c-cccccHHHHHHHHHhcC-C--------------------CCcccc----------cCCCCCC
Confidence 65432 2111112 1 01111222111111111 1 111111 1223333
Q ss_pred HHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhH
Q 000129 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (2114)
Q Consensus 969 ~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e 1048 (2114)
...|..|+..|...|+|+.+. +...+|++|+.||.++++|...++++.+...+|. .+++.|.|+-++ .++..|+.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 467899999999999997442 3368999999999999999999999988777765 667777776554 456666555
Q ss_pred HHH
Q 000129 1049 KME 1051 (2114)
Q Consensus 1049 ~~~ 1051 (2114)
+.+
T Consensus 524 ~~~ 526 (1283)
T TIGR01967 524 KQQ 526 (1283)
T ss_pred hHH
Confidence 443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=330.31 Aligned_cols=388 Identities=19% Similarity=0.274 Sum_probs=278.6
Q ss_pred EEEEEeccCCCCCCeEEEEEecccccc-CcccccccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCC
Q 000129 1266 SLNFTVPIYEPLPPQYFIRVVSDKWLG-SQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFN 1343 (2114)
Q Consensus 1266 ~~~f~vp~~~p~p~~y~v~~vSD~wl~-~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~ 1343 (2114)
-++++-|+...+.|.-+|+-+|..-.. ....+.|...+-.+|+ | +..+.-..++.+.++.+-. |+.+||
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipP----P-----IksF~eMKFP~~~L~~lk~KGI~~PT 194 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPP----P-----IKSFKEMKFPKPLLRGLKKKGIVHPT 194 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCC----c-----hhhhhhccCCHHHHHHHHhcCCCCCC
Confidence 466777888887777778777764222 2223344433333332 1 1222223344556666654 799999
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc------cCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~------~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|||.|-++.++.+++ .+-.|-||||||++|.||++-...+. ..+.++-.++|+|+|+||.|++.-+...+...
T Consensus 195 pIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L 273 (610)
T KOG0341|consen 195 PIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAAL 273 (610)
T ss_pred ceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999877 99999999999999999987654432 12335689999999999999998776433321
Q ss_pred -----CCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1418 -----LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1418 -----~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
..++...+.|+.+.. ...+..+ ||+|+||+++..++.+ ....+.-.+++.+|||+++.+.+ +-.
T Consensus 274 ~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDEADRmiDmG------FEd 345 (610)
T KOG0341|consen 274 QEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDEADRMIDMG------FED 345 (610)
T ss_pred HhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhhHHHHhhcc------chh
Confidence 235677788887765 4445555 9999999999888765 34467788999999999998776 555
Q ss_pred HHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH---HhcCHHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM---QAMTKPTFTA 1566 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1566 (2114)
.++.+...+....|.++||||+|.. +..|.. +.-+.|+.+.+.-.+....+..... ..-++-+ .
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP~K--IQ~FAk---------SALVKPvtvNVGRAGAAsldViQevEyVkqEaKiV--y 412 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMPKK--IQNFAK---------SALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIV--Y 412 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccccHH--HHHHHH---------hhcccceEEecccccccchhHHHHHHHHHhhhhhh--h
Confidence 6666666667788999999999753 222221 1233555555544333222222221 1122222 2
Q ss_pred HHHHhc-CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1567 IVQHAK-NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1567 i~~~l~-~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
++..+. ...|+||||..+..+..+...|.- -+..+..+|||-.+
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl-----------------------------------KGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLL-----------------------------------KGVEAVAIHGGKDQ 457 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHH-----------------------------------ccceeEEeecCcch
Confidence 333333 456799999999888777765521 12236789999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
++|...++.|+.|+-+|||||++++.|+|+|++.+|| ||++|-.+.+|+||+||+||. +..|.+..|.
T Consensus 458 edR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI----------NyDMP~eIENYVHRIGRTGRs--g~~GiATTfI 525 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI----------NYDMPEEIENYVHRIGRTGRS--GKTGIATTFI 525 (610)
T ss_pred hHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc----------cCCChHHHHHHHHHhcccCCC--CCcceeeeee
Confidence 9999999999999999999999999999999999999 999999999999999999998 7899999999
Q ss_pred ecCcHH
Q 000129 1726 HAPRKE 1731 (2114)
Q Consensus 1726 ~~~~~~ 1731 (2114)
+....+
T Consensus 526 NK~~~e 531 (610)
T KOG0341|consen 526 NKNQEE 531 (610)
T ss_pred cccchH
Confidence 877544
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=339.69 Aligned_cols=330 Identities=18% Similarity=0.249 Sum_probs=253.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|..|++||.+|||.++.+-+ +||.|..|+|||++|...+++.+... ...+++++++|||++|.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4889999999999999998877 99999999999999999888877543 24568999999999999999999
Q ss_pred HHhhcc-CCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc--CCchhHHH
Q 000129 571 SNRLQM-YDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~-~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~ 645 (2114)
.+.... .|.++..+.|++..... .++.++|+|+||+++..|..... ...+.++|+|+|||+.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 987763 48999999999876654 46789999999999866655432 5678899999999999987 35566655
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccc--ccceeEEEeeccC-chhHHHHHhhHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP--VPLSQQYIGIQVK-KPLQRFQLMNDL 722 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rp--v~l~~~~~~~~~~-~~~~~~~~~~~~ 722 (2114)
|+.. ++...|++++|||-|. -+++.|...+.++.++--+.--+ ..+.|.++..... .....+..+.+.
T Consensus 192 ii~s-------lP~~rQv~a~SATYp~--nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 192 IINS-------LPQIRQVAAFSATYPR--NLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred HHHh-------cchhheeeEEeccCch--hHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 5544 4678899999999983 34444433333444432222222 2344444433322 222333333222
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
...+....+-.|.||||+....|+.+|..|...|+.+ .+..|
T Consensus 263 -L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~-------------------------------------~~ISg 304 (980)
T KOG4284|consen 263 -LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDV-------------------------------------TFISG 304 (980)
T ss_pred -HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCe-------------------------------------EEecc
Confidence 2345555667799999999999999999998877554 34589
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
.|++.+|..+++.++.-..+|||+|+..+||||-|.+++|||-+.|. ....|+||+|||||-| ..|.+
T Consensus 305 aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~----------d~eTY~HRIGRAgRFG--~~G~a 372 (980)
T KOG4284|consen 305 AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPA----------DEETYFHRIGRAGRFG--AHGAA 372 (980)
T ss_pred ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCc----------chHHHHHHhhhccccc--cccee
Confidence 99999999999999999999999999999999999999999944444 4557999999999965 88999
Q ss_pred EEEcCCCc
Q 000129 883 IIITGHSE 890 (2114)
Q Consensus 883 iil~~~~e 890 (2114)
|.++...+
T Consensus 373 VT~~~~~~ 380 (980)
T KOG4284|consen 373 VTLLEDER 380 (980)
T ss_pred EEEeccch
Confidence 99887754
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=354.44 Aligned_cols=362 Identities=21% Similarity=0.339 Sum_probs=275.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||..++|||.+|||.++.+.+ ||.+|-||||||++|+||+++++...+... ...++.+|+++||++|+.|+.+.+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred hcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHH
Confidence 3899999999999999998877 999999999999999999998887654322 225789999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-CCchhHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (2114)
..++..+|+++..++|+...+.+. ...+.|+||||+++ |.+.-..+....+.++-++|+||+|.|.| .+-|..-.
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 999999999999999998877653 35699999999996 88887777667778888999999999998 68888776
Q ss_pred HHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcc-cccceeEEEeeccCchhHHHHHhhHHH
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (2114)
|+..+ ++..|.+++|||+|. .+.++.-....|.. ..+...-. .-.+.+.+..... ...++..+.+
T Consensus 539 Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~e-- 605 (997)
T KOG0334|consen 539 ILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLE-- 605 (997)
T ss_pred HHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC--chHHHHHHHH--
Confidence 66554 678899999999986 33344333332221 22221111 1122333332221 1222222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC
Q 000129 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag 803 (2114)
.+.......++||||.+...|..+.+.|...+..+..+ |||
T Consensus 606 --Ll~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~sl-------------------------------------HGg 646 (997)
T KOG0334|consen 606 --LLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSL-------------------------------------HGG 646 (997)
T ss_pred --HHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhh-------------------------------------cCC
Confidence 23333447899999999999999999999777665433 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
.++.+|..+++.|++|.+.+||||+++++|+|++...+||+ ||.+. -..+|+||+||+||+| .+|.|+
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Av 714 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAV 714 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeE
Confidence 99999999999999999999999999999999999999999 88776 4677999999999998 789999
Q ss_pred EEcCCCcHHHHHH------hhcCCCcccchhhHhhHHHHHHHHhhc
Q 000129 884 IITGHSELRYYLS------LMNQQLPIESQFVSKLADQLNAEIVLG 923 (2114)
Q Consensus 884 il~~~~e~~~~~~------ll~~~~pies~l~~~l~d~l~~ei~~~ 923 (2114)
.|.++.+..+--. +...+.| .+...+.....++...|
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P---~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVP---KLLQALSERFKAKQKAG 757 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCc---hHHHHHHHHHHhhhhcc
Confidence 9998855443222 2233333 55555555555555444
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=364.79 Aligned_cols=307 Identities=23% Similarity=0.321 Sum_probs=220.1
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+| +||++|.+|++.+..+. .|+|++||||||||.+|++|++..+.. +.+++|++||++||.|+
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQH 326 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHH
Confidence 35 69999999999988763 379999999999999999999988754 34899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCC
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
++.+++++..+|+++..++|+.+...+. .+.++|+|+||+.+. ....+++++++||||+|++...
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~- 398 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVE- 398 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHH-
Confidence 9999999999999999999998754321 236899999998652 1234678999999999986421
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC-CcccccceeEEEeeccCchhHHHHH
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
.... +......+++++||||. ....++........ ....+. .....++...+.. .... .
T Consensus 399 ---qr~~-------l~~~~~~~~iL~~SATp-~prtl~~~~~g~~~--~s~i~~~p~~r~~i~~~~~~--~~~~----~- 458 (681)
T PRK10917 399 ---QRLA-------LREKGENPHVLVMTATP-IPRTLAMTAYGDLD--VSVIDELPPGRKPITTVVIP--DSRR----D- 458 (681)
T ss_pred ---HHHH-------HHhcCCCCCEEEEeCCC-CHHHHHHHHcCCCc--eEEEecCCCCCCCcEEEEeC--cccH----H-
Confidence 1111 11234468899999994 44444433322111 111111 0001123322221 1111 1
Q ss_pred hhHHHHHHHHHH-hCCCeEEEEecChHHHHH--------HHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 719 MNDLCYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 719 ~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
.+++.+.+. ..+++++|||+..++.+. +++.|.
T Consensus 459 ---~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~----------------------------------- 500 (681)
T PRK10917 459 ---EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQ----------------------------------- 500 (681)
T ss_pred ---HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHH-----------------------------------
Confidence 122222222 346799999997654432 222222
Q ss_pred hhhc-cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 790 KDLL-PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 790 ~~ll-~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
..+ ...++.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. .+...+.||+
T Consensus 501 -~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~ 570 (681)
T PRK10917 501 -EAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLR 570 (681)
T ss_pred -HHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHh
Confidence 111 256899999999999999999999999999999999999999999999998 77664 3678899999
Q ss_pred cccCCCCCCCceEEEEEcCC
Q 000129 869 GRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~ 888 (2114)
||+||.| ..|.|+++++.
T Consensus 571 GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 571 GRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred hcccCCC--CceEEEEEECC
Confidence 9999987 67999999964
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=336.43 Aligned_cols=348 Identities=20% Similarity=0.259 Sum_probs=251.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+...+.+.+ .||..|+|+|.+|+|.+++.. +++.|||||||||++|.+|++..+...... ....+.+++++.||
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r-~~lAcapTGsgKtlaf~~Pil~~L~~~~~~---~~~~gl~a~Il~pt 218 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEKR-DVLACAPTGSGKTLAFNLPILQHLKDLSQE---KHKVGLRALILSPT 218 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhhhhccc-ceEEeccCCCcchhhhhhHHHHHHHHhhcc---cCccceEEEEecch
Confidence 344445555 689999999999999877765 599999999999999999999999876421 12356799999999
Q ss_pred HHHHHHHHHHHHHhh--ccCCcEEEEEeCCCccChh----hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 560 KALVAEVVGNLSNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 560 raLa~q~~~~~~~~~--~~~gi~v~~l~Gd~~~~~~----~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
|+||.|+++++.++- ...+.++..+........+ ....++|+|+||-++--+.........+..|.++|+||++
T Consensus 219 reLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD 298 (593)
T KOG0344|consen 219 RELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD 298 (593)
T ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH
Confidence 999999999999877 5556666666665333222 2357899999999864444333323567889999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccc---cceeEEEeeccC
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV---PLSQQYIGIQVK 710 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv---~l~~~~~~~~~~ 710 (2114)
++.+. ..+-.-++++.... ..+++++-+||||++ ..+.+|........... .-..++. .+.|..+.+...
T Consensus 299 ~lfe~--~~f~~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~v-ivg~~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 299 LLFEP--EFFVEQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSDLKRV-IVGLRNSANETVDQELVFCGSE 371 (593)
T ss_pred hhhCh--hhHHHHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhccceeE-EEecchhHhhhhhhhheeeecc
Confidence 99764 12222233333222 347889999999987 67888987654322211 1111211 122222211111
Q ss_pred chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
..++-++.+ +....-..|+|||+.+.+.|..+...|.. .
T Consensus 372 --~~K~lA~rq-----~v~~g~~PP~lIfVQs~eRak~L~~~L~~----~------------------------------ 410 (593)
T KOG0344|consen 372 --KGKLLALRQ-----LVASGFKPPVLIFVQSKERAKQLFEELEI----Y------------------------------ 410 (593)
T ss_pred --hhHHHHHHH-----HHhccCCCCeEEEEecHHHHHHHHHHhhh----c------------------------------
Confidence 111222221 22222367999999999999988877741 0
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
-...|++.||..++.+|..++++|+.|+++||+||++++||+|+.+++.||| ||.+. |..+|+||+||
T Consensus 411 --~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGR 478 (593)
T KOG0344|consen 411 --DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGR 478 (593)
T ss_pred --cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhc
Confidence 0124788899999999999999999999999999999999999999999999 88877 88999999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+||+| ..|.||.+++..+..+..
T Consensus 479 tgRag--~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 479 TGRAG--RSGKAITFYTDQDMPRIR 501 (593)
T ss_pred cCCCC--CCcceEEEeccccchhhh
Confidence 99998 889999999997766654
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=363.51 Aligned_cols=312 Identities=23% Similarity=0.329 Sum_probs=219.6
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+| +||++|.+|++.++.+- .|.|++||||||||.+|+++++..+..+ .+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-----------~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-----------YQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-----------CcEEEECCHHHHHHHH
Confidence 46 79999999999988752 2689999999999999999999987542 4799999999999999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCC
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
++.++++++.+|+++..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999999999999999998755421 235799999998642 1 1346789999999999864321
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHh
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
...+... .......++++||||.. ...++..+............+.. ..++...+.. ... .
T Consensus 374 ----r~~l~~~----~~~~~~~~~l~~SATp~-prtl~l~~~~~l~~~~i~~~p~~-r~~i~~~~~~--~~~---~---- 434 (630)
T TIGR00643 374 ----RKKLREK----GQGGFTPHVLVMSATPI-PRTLALTVYGDLDTSIIDELPPG-RKPITTVLIK--HDE---K---- 434 (630)
T ss_pred ----HHHHHHh----cccCCCCCEEEEeCCCC-cHHHHHHhcCCcceeeeccCCCC-CCceEEEEeC--cch---H----
Confidence 1111111 00112678999999943 34444332211111010000000 1122222221 111 1
Q ss_pred hHHHHHHHHHH-hCCCeEEEEecChHHHHHH--------HHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
+.++..+.+. ..+++++|||+..++.+.+ ++.|.+.
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 2233444433 3477999999987654332 2222110
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
+-...++.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. |+++. .+...|.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 11356899999999999999999999999999999999999999999999997 77654 367889999999
Q ss_pred cCCCCCCCceEEEEEcCC
Q 000129 871 AGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (2114)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99986 67999999843
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=332.15 Aligned_cols=334 Identities=24% Similarity=0.339 Sum_probs=251.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
+|..|+|+|.+|++.+++..+ ++.|||||||||++|.+|++.++.... ...+.+++++.|+|+||.|++.+.. ++
T Consensus 155 ~F~~Pt~iq~~aipvfl~~r~-~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~-k~ 232 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFLEKRD-VLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMR-KY 232 (593)
T ss_pred CCCCCCcccchhhhhhhcccc-eEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHH-hc
Confidence 799999999999999988555 999999999999999999999998754 1446799999999999999999998 56
Q ss_pred c--CCCCcEEEEEcCCcccch----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1415 G--QGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1415 ~--~~~g~~v~~l~G~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
. ...+.++..+........ .....++|+++||-++..++........+..|.++|+||+|++.+. +.++
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-----~~f~ 307 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-----EFFV 307 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh-----hhHH
Confidence 6 445666666655433321 2234569999999998777765333347899999999999999866 3355
Q ss_pred HHHHHHHhh-cCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH--hcCHHHHH
Q 000129 1489 SRMRYIASQ-VENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ--AMTKPTFT 1565 (2114)
Q Consensus 1489 srl~~i~~~-~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 1565 (2114)
.++-.+.+. ..+++++-+||||.+ ..+.+|.........+..-..++...+ ...+... -.....+.
T Consensus 308 ~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~---------~V~QelvF~gse~~K~l 376 (593)
T KOG0344|consen 308 EQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANE---------TVDQELVFCGSEKGKLL 376 (593)
T ss_pred HHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhh---------hhhhhheeeecchhHHH
Confidence 555444433 246788889999975 458888876654433332222221111 0011100 01122233
Q ss_pred HHHHHhc--CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1566 AIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1566 ~i~~~l~--~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
++.+.+. -..|+|||+.+.+.|..+...|- .+-...|.+.||..
T Consensus 377 A~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----------------------------------~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 377 ALRQLVASGFKPPVLIFVQSKERAKQLFEELE----------------------------------IYDNINVDVIHGER 422 (593)
T ss_pred HHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----------------------------------hccCcceeeEeccc
Confidence 3333333 34679999999999988886662 11233589999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
++.+|..+++.|+.|++.||+||++++||+|+.+++.|| +||+|-+..+|+||+||+||+ +..|+||.
T Consensus 423 ~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI----------nyD~p~s~~syihrIGRtgRa--g~~g~Ait 490 (593)
T KOG0344|consen 423 SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI----------NYDFPQSDLSYIHRIGRTGRA--GRSGKAIT 490 (593)
T ss_pred chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE----------ecCCCchhHHHHHHhhccCCC--CCCcceEE
Confidence 999999999999999999999999999999999999999 899999999999999999999 79999999
Q ss_pred EeecCcHHHHHH
Q 000129 1724 LCHAPRKEYYKK 1735 (2114)
Q Consensus 1724 l~~~~~~~~~~~ 1735 (2114)
|+.+.+..+.+.
T Consensus 491 fytd~d~~~ir~ 502 (593)
T KOG0344|consen 491 FYTDQDMPRIRS 502 (593)
T ss_pred Eeccccchhhhh
Confidence 999877665443
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=358.01 Aligned_cols=429 Identities=14% Similarity=0.131 Sum_probs=277.4
Q ss_pred HHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q 000129 1348 QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG 1427 (2114)
Q Consensus 1348 q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G 1427 (2114)
+.|...+.+++.++|+|+||||||+. +|.+-.-......+ ++++..|+|-.|..++.++...++..+|..|+.-+.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 34444556678799999999999995 56332211111223 778889987777777766666665444545543222
Q ss_pred CcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc-ccCCCCchHHHHHHHHHHHHhhcCCCceEEE
Q 000129 1428 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2114)
Q Consensus 1428 ~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~-l~~~~g~~le~i~srl~~i~~~~~~~~riV~ 1506 (2114)
.+.+.-..++|+|+||+++...+.. ...++++++|||||||. ..+.. .++..++.+... .++.|+|+
T Consensus 156 ---f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~D-----fLLg~Lk~lL~~-rpdlKvIL 223 (1294)
T PRK11131 156 ---FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNID-----FILGYLKELLPR-RPDLKVII 223 (1294)
T ss_pred ---CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccc-----hHHHHHHHhhhc-CCCceEEE
Confidence 1222234679999999998877654 45699999999999993 33221 133444544433 35789999
Q ss_pred EcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHH-hcCCCCEEEEeCChH
Q 000129 1507 LSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRK 1585 (2114)
Q Consensus 1507 lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~~~LVFv~sr~ 1585 (2114)
||||+ +.+.++++++..+ ++..+. +..|+++.+............ .........+... ....+.+|||||++.
T Consensus 224 mSATi-d~e~fs~~F~~ap--vI~V~G--r~~pVei~y~p~~~~~~~~~~-d~l~~ll~~V~~l~~~~~GdILVFLpg~~ 297 (1294)
T PRK11131 224 TSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPIVEEADDTER-DQLQAIFDAVDELGREGPGDILIFMSGER 297 (1294)
T ss_pred eeCCC-CHHHHHHHcCCCC--EEEEcC--ccccceEEEeecccccchhhH-HHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Confidence 99999 5778998887543 444443 334555544432211100000 0001111111111 134578999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000129 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2114)
Q Consensus 1586 ~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa 1665 (2114)
+++.++..|..... ....|..+||+|++.+|..+++. .|..+||||
T Consensus 298 EIe~lae~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVA 343 (1294)
T PRK11131 298 EIRDTADALNKLNL--------------------------------RHTEILPLYARLSNSEQNRVFQS--HSGRRIVLA 343 (1294)
T ss_pred HHHHHHHHHHhcCC--------------------------------CcceEeecccCCCHHHHHHHhcc--cCCeeEEEe
Confidence 99999977743100 01237789999999999999986 588999999
Q ss_pred cCccccccCCCCcEEEEE----eeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1666 SSSMCWGVPLTAHLVVVM----GTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1666 T~~la~Gvdip~~~vVI~----gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|+++++|||+|++.+||. ....|+.+.+. ..+.|.++|.||+|||||. .+|.||.++++.+...+..
T Consensus 344 TNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~~~~~-- 418 (1294)
T PRK11131 344 TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFLSRPE-- 418 (1294)
T ss_pred ccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHHhhhc--
Confidence 999999999999999993 23567766432 2356789999999999995 6999999998654332221
Q ss_pred HhccCCCCc--------------cccCCCcc-chHHHHHHHHHHHHHHHHHCCCceecCC-CccccCcccchhhhcccCH
Q 000129 1738 RLTQNPNYY--------------NLQGVSHR-HLSDHLSELVENTISDLEASKCIIIEED-MDLSPSNHGMIASYYYISY 1801 (2114)
Q Consensus 1738 Rl~~nP~~y--------------~l~~~s~~-~l~~~lselve~~l~~L~~~~~I~~~~~-~~~~~t~lG~i~s~y~i~~ 1801 (2114)
...|... ++.++... -++..-.+.|..++..|.+.|+|+.++. +...+|++|+.+|.+|++|
T Consensus 419 --~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldP 496 (1294)
T PRK11131 419 --FTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDP 496 (1294)
T ss_pred --ccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCCh
Confidence 1222211 11111110 1111235789999999999999975422 2467999999999999999
Q ss_pred hHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHH
Q 000129 1802 TTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEE 1841 (2114)
Q Consensus 1802 ~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~ 1841 (2114)
...++++.+....+ +.+++.|.|.-+ ..+...|+.++.
T Consensus 497 rlakmLl~a~~~~c-~~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 497 RLARMVLEAQKHGC-VREVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred HHHHHHHHhhhcCC-HHHHHHHHHHHc-CCCcccCCchhH
Confidence 99999998766554 455665554332 345555655543
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=359.17 Aligned_cols=314 Identities=17% Similarity=0.249 Sum_probs=228.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+..-|+ | .+|++|.+|++.++.+ ..+++++||||||||.+|..+++..+.. +. +++|++||++||.|+
T Consensus 593 ~~~~~~-~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 593 FCDSFP-F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTLLAQQH 665 (1147)
T ss_pred HHHhCC-C-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHH
Confidence 334343 5 7999999999999875 2579999999999999999888776543 34 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccchh-----hc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
++.|+++|+.. ++++..++|..+...+ .+ ...+|+|+||+.+ +. ...+++++++||||+|+++..
T Consensus 666 ~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEahrfG~~ 737 (1147)
T PRK10689 666 YDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEHRFGVR 737 (1147)
T ss_pred HHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechhhcchh
Confidence 99999877654 7888888887665421 12 2459999999742 22 234678999999999997421
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 1558 (2114)
...++ ..++.+.++++||||+.. ...++. .+.....++..++..| .++...+..+..
T Consensus 738 -------~~e~l----k~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~r-~~v~~~~~~~~~--------- 795 (1147)
T PRK10689 738 -------HKERI----KAMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPARR-LAVKTFVREYDS--------- 795 (1147)
T ss_pred -------HHHHH----HhcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCCC-CCceEEEEecCc---------
Confidence 12222 234678999999999743 223322 2222223444333332 244433332210
Q ss_pred cCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe
Q 000129 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2114)
Q Consensus 1559 ~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~ 1638 (2114)
......+...+..+++++||||+++.++.++..|.... ...+|+.
T Consensus 796 --~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~---------------------------------p~~~v~~ 840 (1147)
T PRK10689 796 --LVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV---------------------------------PEARIAI 840 (1147)
T ss_pred --HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---------------------------------CCCcEEE
Confidence 11223444444668899999999999988887664321 1346899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1639 ~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+||+|++.+|..++..|++|+++|||||+++++|+|+|++++||. .....++...|+||+||+||. +..
T Consensus 841 lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi---------~~ad~fglaq~~Qr~GRvGR~--g~~ 909 (1147)
T PRK10689 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII---------ERADHFGLAQLHQLRGRVGRS--HHQ 909 (1147)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE---------ecCCCCCHHHHHHHhhccCCC--CCc
Confidence 999999999999999999999999999999999999999999883 111235677899999999997 789
Q ss_pred eEEEEEeecC
Q 000129 1719 GKCVILCHAP 1728 (2114)
Q Consensus 1719 G~~iil~~~~ 1728 (2114)
|.|++++..+
T Consensus 910 g~a~ll~~~~ 919 (1147)
T PRK10689 910 AYAWLLTPHP 919 (1147)
T ss_pred eEEEEEeCCC
Confidence 9999999765
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=354.42 Aligned_cols=314 Identities=23% Similarity=0.340 Sum_probs=220.9
Q ss_pred CCCHHHHHHHHHHHcCC-----CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTD-----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~-----~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.||++|.+|++.+..+- .|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++.+.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHHHHHHHHHHHHHHh
Confidence 59999999999998742 479999999999999999999987754 33 999999999999999999996555
Q ss_pred CCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
. .|++++.++|+.+... ..+. ..+|+|+||+.+. ....+.+++++|+||+|+++... .
T Consensus 336 ~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~q-------r 400 (681)
T PRK10917 336 P-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVEQ-------R 400 (681)
T ss_pred h-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHHH-------H
Confidence 4 5899999999987532 2232 4699999998752 22357899999999999874211 1
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCChhHHHHH-hcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHH
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dla~w-l~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 1567 (2114)
..+. ......++++||||+. .+.++-. .+......+.-.|..|. |+...+.... . ....+..+
T Consensus 401 ~~l~----~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~--~--------~~~~~~~i 464 (681)
T PRK10917 401 LALR----EKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS--R--------RDEVYERI 464 (681)
T ss_pred HHHH----hcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc--c--------HHHHHHHH
Confidence 1121 1244688999999974 3333322 22222112221222222 3333322211 0 01234455
Q ss_pred HHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh-ccceEeecCCCCHH
Q 000129 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1568 ~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gV~~~H~~ls~~ 1646 (2114)
...+..+++++||||+.+.+..+. + ....... +.+...+ ...|+.+||+|++.
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~--~-------------------~~~~~~~-----~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLD--L-------------------QSAEETY-----EELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchh--H-------------------HHHHHHH-----HHHHHHCCCCcEEEEeCCCCHH
Confidence 555577889999999765443210 0 0000000 1122222 35799999999999
Q ss_pred HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
+|..+++.|++|+++|||||+++++|+|+|++++|| +++.| +..+.+.||+||+||. +..|.|++++
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI----------i~~~~r~gls~lhQ~~GRvGR~--g~~g~~ill~ 586 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV----------IENAERFGLAQLHQLRGRVGRG--AAQSYCVLLY 586 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE----------EeCCCCCCHHHHHHHhhcccCC--CCceEEEEEE
Confidence 999999999999999999999999999999999998 45454 3578899999999998 6799999999
Q ss_pred ecC
Q 000129 1726 HAP 1728 (2114)
Q Consensus 1726 ~~~ 1728 (2114)
+.+
T Consensus 587 ~~~ 589 (681)
T PRK10917 587 KDP 589 (681)
T ss_pred CCC
Confidence 644
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=328.72 Aligned_cols=341 Identities=18% Similarity=0.239 Sum_probs=261.3
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+.+..+-. +|..++++|..|||.++.+-+ +||.|..|+|||++|-.++++.+... ...+.+++++|||++|.|+..
T Consensus 35 ~vl~glrrn~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~PTREiaVQI~~ 111 (980)
T KOG4284|consen 35 EVLLGLRRNAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVTPTREIAVQIKE 111 (980)
T ss_pred HHHHHHHhhcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEecchhhhhHHHH
Confidence 33444433 599999999999999998666 99999999999999998888887763 334599999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCccc--chhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~--~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~ 1486 (2114)
.+.+.-....|.++..+.|++.. |...+++++|+|+||+++..|... ...+..+++|+|+||||.|.+.. .
T Consensus 112 tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~-----s 184 (980)
T KOG4284|consen 112 TVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE-----S 184 (980)
T ss_pred HHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh-----h
Confidence 99843334478999999998764 566788999999999999988875 45578999999999999887643 2
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCC-CCccCcEEEEecccccchHHHHHhcCHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 1563 (2114)
+...+..|...++...|++++|||.+. ...++.++..+. ++.|... ..-.-+..++.....++.........-..
T Consensus 185 fq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 185 FQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred HHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 566666777778889999999999976 335777776543 2222221 11112222333222222221111111122
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
+..+... -+-.++||||+....|+.+|..|.. -+..+.++.|.|
T Consensus 263 L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~s-----------------------------------sG~d~~~ISgaM 306 (980)
T KOG4284|consen 263 LTHVFKS-IPYVQALVFCDQISRAEPIATHLKS-----------------------------------SGLDVTFISGAM 306 (980)
T ss_pred HHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhc-----------------------------------cCCCeEEecccc
Confidence 2233333 3556899999999999888866622 244588999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
++.+|..+++.+++-..+|||+|+..+||||-|.+++|| +.+.|.+-..|+||+|||||- |..|.++.
T Consensus 307 ~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV----------NiD~p~d~eTY~HRIGRAgRF--G~~G~aVT 374 (980)
T KOG4284|consen 307 SQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV----------NIDAPADEETYFHRIGRAGRF--GAHGAAVT 374 (980)
T ss_pred chhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE----------ecCCCcchHHHHHHhhhcccc--cccceeEE
Confidence 999999999999999999999999999999999999999 999999999999999999995 79999999
Q ss_pred EeecCcH
Q 000129 1724 LCHAPRK 1730 (2114)
Q Consensus 1724 l~~~~~~ 1730 (2114)
+|...+.
T Consensus 375 ~~~~~~e 381 (980)
T KOG4284|consen 375 LLEDERE 381 (980)
T ss_pred Eeccchh
Confidence 9987764
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=365.66 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.||++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|+++.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHH
Confidence 7999999999998876 2569999999999999999988877643 34899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
|++++..+++++..++|..+...+. ...++|+|+||+. +. . ...++++++|||||+|+++ ..
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L~-~---~v~~~~L~lLVIDEahrfG----~~ 737 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---LQ-S---DVKWKDLGLLIVDEEHRFG----VR 737 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---Hh-C---CCCHhhCCEEEEechhhcc----hh
Confidence 9999988889999999877654432 1368999999973 22 2 1346789999999999973 21
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHH
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
.... +.....++++++||||.+. ..+...+... .+......+.....++...+..+ ... . +...
T Consensus 738 ~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~gl-~d~~~I~~~p~~r~~v~~~~~~~--~~~-~----~k~~ 801 (1147)
T PRK10689 738 HKER-------IKAMRADVDILTLTATPIP-RTLNMAMSGM-RDLSIIATPPARRLAVKTFVREY--DSL-V----VREA 801 (1147)
T ss_pred HHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhhC-CCcEEEecCCCCCCCceEEEEec--CcH-H----HHHH
Confidence 1111 2234678999999999532 2232222111 12222222111112333222211 110 0 0111
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC
Q 000129 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2114)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa 802 (2114)
...+...+++++||||+++.++.++..|..... ..+++.+||
T Consensus 802 ---il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG 843 (1147)
T PRK10689 802 ---ILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHG 843 (1147)
T ss_pred ---HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeC
Confidence 122333478999999999999999988875421 135788899
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++..+|+||+||+||.| ..|.|
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~g~a 912 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYA 912 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--CceEE
Confidence 999999999999999999999999999999999999999985 33332 35678999999999976 78999
Q ss_pred EEEcCCC
Q 000129 883 IIITGHS 889 (2114)
Q Consensus 883 iil~~~~ 889 (2114)
|+++..+
T Consensus 913 ~ll~~~~ 919 (1147)
T PRK10689 913 WLLTPHP 919 (1147)
T ss_pred EEEeCCC
Confidence 9998764
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=326.09 Aligned_cols=442 Identities=17% Similarity=0.201 Sum_probs=312.1
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEE
Q 000129 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2114)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l 584 (2114)
-..++.++.++|.|+||||||+.....+...-... ..+|.+..|+|--|..+++++..-. |..++..
T Consensus 60 l~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~----------~g~I~~TQPRRVAavslA~RVAeE~---~~~lG~~ 126 (674)
T KOG0922|consen 60 LYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS----------SGKIACTQPRRVAAVSLAKRVAEEM---GCQLGEE 126 (674)
T ss_pred HHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc----------CCcEEeecCchHHHHHHHHHHHHHh---CCCcCce
Confidence 34567888899999999999998655554432211 1259999999999999998887643 3444444
Q ss_pred eC-CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccE
Q 000129 585 SG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRL 663 (2114)
Q Consensus 585 ~G-d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ri 663 (2114)
+| ...+++.....+.|.+.|.+ +++|.......++.+++||+||||. | .....++--+++.+-..+++.|+
T Consensus 127 VGY~IRFed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAHE----R-sl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 127 VGYTIRFEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAHE----R-SLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred eeeEEEecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechhh----h-hhHHHHHHHHHHHHHhcCCCceE
Confidence 44 22344444457999999999 6788877778899999999999995 3 33334444455555556788999
Q ss_pred EEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecCh
Q 000129 664 VGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR 743 (2114)
Q Consensus 664 v~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr 743 (2114)
|.+|||+ |.+.+.+|+.. .+++...+...||.+ .|...+ ......+....+.+ +....+.+.+|||.+++
T Consensus 199 IimSATl-da~kfS~yF~~---a~i~~i~GR~fPVei--~y~~~p---~~dYv~a~~~tv~~-Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 199 IIMSATL-DAEKFSEYFNN---APILTIPGRTFPVEI--LYLKEP---TADYVDAALITVIQ-IHLTEPPGDILVFLTGQ 268 (674)
T ss_pred EEEeeee-cHHHHHHHhcC---CceEeecCCCCceeE--EeccCC---chhhHHHHHHHHHH-HHccCCCCCEEEEeCCH
Confidence 9999998 78899999875 356666666666543 333211 12222222222222 33335577999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceE
Q 000129 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823 (2114)
Q Consensus 744 ~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~V 823 (2114)
++.+.++..|.+........ .+.-+...||.|+.+++..|++.-..|..+|
T Consensus 269 eEIe~~~~~l~e~~~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKv 319 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKV 319 (674)
T ss_pred HHHHHHHHHHHHHhhhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceE
Confidence 99999999998764322110 0112456799999999999999999999999
Q ss_pred EEechHhhhhcCCCceEEEEec----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 824 LVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 824 LVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
++||++++..|.+|++.+||+. ...|+|..|.. .++|.++..||.|||||.| +|+||.+++.++ |.
T Consensus 320 IlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~ 393 (674)
T KOG0922|consen 320 ILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YD 393 (674)
T ss_pred EEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hh
Confidence 9999999999999999999995 46799988754 6799999999999999984 899999999766 35
Q ss_pred HhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHH
Q 000129 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (2114)
Q Consensus 896 ~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (2114)
++..++.|-... ..|...+..-.++| ..||.-+. .++.+..+.+..|
T Consensus 394 ~~~~~~~PEI~R--~~Ls~~vL~Lkalg---------------------i~d~l~F~----------f~d~P~~~~l~~A 440 (674)
T KOG0922|consen 394 KMPLQTVPEIQR--VNLSSAVLQLKALG---------------------INDPLRFP----------FIDPPPPEALEEA 440 (674)
T ss_pred hcccCCCCceee--echHHHHHHHHhcC---------------------CCCcccCC----------CCCCCChHHHHHH
Confidence 555555552111 11111111111111 12232221 2333345678899
Q ss_pred HHHHhHCCCcccccCCCccccCh-hHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHH
Q 000129 976 ATILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (2114)
Q Consensus 976 l~~L~~~~~i~~~~~~~~~~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l 1052 (2114)
+..|...|.|+.+ | .+|+ +|+.||.++++|...++++.+-+.+|+ .+++.+.|+-+ -.++..|+.++..-
T Consensus 441 L~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 441 LEELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKKAE 511 (674)
T ss_pred HHHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchhhh
Confidence 9999999999832 4 4555 999999999999999999998888887 68888887766 56777777766543
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=349.98 Aligned_cols=319 Identities=21% Similarity=0.332 Sum_probs=221.2
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
+| .||++|.+|++.++.+ ..|.+++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHHHHHHHHHHHH
Confidence 36 6999999999999864 1368999999999999999999988765 34 899999999999999999996
Q ss_pred HhcCCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1413 KFGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1413 ~f~~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.++. .|+++..++|+.+... ..+. ..+|+|+||+.+. ....+++++++||||+|+++...
T Consensus 307 l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-------~~~~~~~l~lvVIDEaH~fg~~q----- 373 (630)
T TIGR00643 307 LLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-------EKVEFKRLALVIIDEQHRFGVEQ----- 373 (630)
T ss_pred Hhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-------ccccccccceEEEechhhccHHH-----
Confidence 6654 4899999999876542 2233 3599999998753 12357899999999999875321
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHh-cCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHH
Q 000129 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl-~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 1564 (2114)
...+...... ....++++||||+.. +.++..+ +..........+..| .|+...+.... .. ...+
T Consensus 374 --r~~l~~~~~~-~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~--~~--------~~~~ 438 (630)
T TIGR00643 374 --RKKLREKGQG-GFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD--EK--------DIVY 438 (630)
T ss_pred --HHHHHHhccc-CCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc--hH--------HHHH
Confidence 1111111100 126789999999743 3333222 211111111112112 23333322111 10 2345
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH-HhccceEeecCCC
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLHEGL 1643 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gV~~~H~~l 1643 (2114)
..+...+..+++++|||++...+..+.. ....... ..+.+ ..+..|+.+||+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~---------------------~~a~~~~-----~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDL---------------------KAAEALY-----ERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchH---------------------HHHHHHH-----HHHHhhCCCCcEEEEeCCC
Confidence 5555555678899999998754432200 0000001 11111 2345799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
++.+|..+++.|++|+++|||||+++++|||+|++++|| +++.| ++.+.|.||+|||||. +..|.|+
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI----------i~~~~r~gls~lhQ~~GRvGR~--g~~g~~i 560 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV----------IEDAERFGLSQLHQLRGRVGRG--DHQSYCL 560 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE----------EeCCCcCCHHHHHHHhhhcccC--CCCcEEE
Confidence 999999999999999999999999999999999999988 44444 4688999999999998 6899999
Q ss_pred EEeecC
Q 000129 1723 ILCHAP 1728 (2114)
Q Consensus 1723 il~~~~ 1728 (2114)
+++.++
T Consensus 561 l~~~~~ 566 (630)
T TIGR00643 561 LVYKNP 566 (630)
T ss_pred EEECCC
Confidence 999543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=341.64 Aligned_cols=327 Identities=18% Similarity=0.185 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHH---------HHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAV---------LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~---------l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
.+|.++++.+.+++ ++|++|+||||||.+.. ++.+..+..-. . .....++++++|||+||.|+..
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-P----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-c----ccCCcEEEEECcHHHHHHHHHH
Confidence 48999999887664 59999999999999843 33333332110 0 1123589999999999999999
Q ss_pred HHHHhhcc---CCcEEEEEeCCCccC--hhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhH
Q 000129 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 569 ~~~~~~~~---~gi~v~~l~Gd~~~~--~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
++.+.++. .|+.+....|+.... .......+|+|+|+.. ....++.+++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876654 367788899987632 1122357899999752 1135778999999999987543 3333
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCc--hhHHHHHhh
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRFQLMN 720 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~~~~~ 720 (2114)
..++.... ....|+++||||++. .+.+..|++. ...+..... ...|+++.++...... .......-.
T Consensus 311 L~llk~~~------~~~rq~ILmSATl~~dv~~l~~~~~~---p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 311 IAVARKHI------DKIRSLFLMTATLEDDRDRIKEFFPN---PAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHhh------hhcCEEEEEccCCcHhHHHHHHHhcC---CcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHH
Confidence 33332221 122489999999973 4556666642 122222221 1245555554322110 000000001
Q ss_pred HHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceE
Q 000129 721 DLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2114)
Q Consensus 721 ~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~ 798 (2114)
..+...+.... .++++||||++++++..+++.|..... ...+.
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~ 425 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFY 425 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEE
Confidence 11122222221 256899999999999999998875420 12356
Q ss_pred EecCCCCHHHHHHHHHHH-hCCCceEEEechHhhhhcCCCceEEEEecceeccCC--CCccccCCHHHHHHhhcccCCCC
Q 000129 799 IHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F-~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~--~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
.+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||+++..+.|. .|...++|.++|.||+|||||.
T Consensus 426 ~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 426 IIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred eccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 779999975 4555666 789999999999999999999999999987544442 3444668999999999999997
Q ss_pred CCCceEEEEEcCCCc
Q 000129 876 YDSYGEGIIITGHSE 890 (2114)
Q Consensus 876 ~d~~G~~iil~~~~e 890 (2114)
.+|.|+.+++..+
T Consensus 503 --~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 --SPGTYVYFYDLDL 515 (675)
T ss_pred --CCCeEEEEECHHH
Confidence 5799999998765
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-31 Score=330.47 Aligned_cols=323 Identities=21% Similarity=0.319 Sum_probs=244.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+..|++-|.++|..++.+ +++++..|||+||++||.+|.+-. . | -+|+|+|+.+|..++++.+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~--~-----G-------~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL--E-----G-------LTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred hCccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc--C-----C-------CEEEECchHHHHHHHHHHH
Confidence 48999999999999999888 459999999999999999998754 1 2 5899999999999999998
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHH--HHHHhccCCCcccccccEEEEeccccccc---C
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHD---N 638 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d---~ 638 (2114)
... |+.+..+.+..+.+... ....++++-+||++ ..+.+.. .-..+.+++|||||++.. +
T Consensus 78 ~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L----~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 78 EAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELL----KRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHH----HhCCCceEEechHHHHhhcCCc
Confidence 875 88888888775544332 23579999999996 2222221 134589999999999965 5
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
++|.+..+-.- .. .-+++.+++||||-+. ..|+..-|+.. ....+..+-.||. +...+. ...+...+
T Consensus 150 FRP~Y~~lg~l----~~-~~~~~p~~AlTATA~~~v~~DI~~~L~l~--~~~~~~~sfdRpN-i~~~v~--~~~~~~~q- 218 (590)
T COG0514 150 FRPDYRRLGRL----RA-GLPNPPVLALTATATPRVRDDIREQLGLQ--DANIFRGSFDRPN-LALKVV--EKGEPSDQ- 218 (590)
T ss_pred cCHhHHHHHHH----Hh-hCCCCCEEEEeCCCChHHHHHHHHHhcCC--CcceEEecCCCch-hhhhhh--hcccHHHH-
Confidence 77887755332 22 2348899999999764 45666666654 2223333344542 111111 00011111
Q ss_pred HHhhHHHHHHHHH--HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhcc
Q 000129 717 QLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (2114)
Q Consensus 717 ~~~~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~ 794 (2114)
.. .+.+ ....++.||||.||+.++.+|..|...+.
T Consensus 219 -----~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~------------------------------------ 255 (590)
T COG0514 219 -----LA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGI------------------------------------ 255 (590)
T ss_pred -----HH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCC------------------------------------
Confidence 11 1221 23356789999999999999999987542
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
.++++||||+.++|..+++.|..+.++|+|||.++++|||-|++++||| |+.|. |+.+|.|-+|||||.
T Consensus 256 -~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~GRAGRD 324 (590)
T COG0514 256 -SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETGRAGRD 324 (590)
T ss_pred -ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHhhccCC
Confidence 3678899999999999999999999999999999999999999999999 88776 899999999999999
Q ss_pred CCCCceEEEEEcCCCcHHHHHHhhcCCCc
Q 000129 875 QYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e~~~~~~ll~~~~p 903 (2114)
| .+..|+++++..+......++....|
T Consensus 325 G--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 325 G--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred C--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 8 78999999999998777777776666
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=352.75 Aligned_cols=349 Identities=21% Similarity=0.252 Sum_probs=262.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+..|+++|.+|+..+.++ +|+||++|||||||.+|++||++.+.+... .++|||.||+|||++|.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~~---------a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDPS---------ARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCcC---------ccEEEEechhhhHhhHHHHH
Confidence 57888999999999987766 779999999999999999999999988643 28999999999999999999
Q ss_pred HHhhccCC--cEEEEEeCCCccChhh---hccceEEEcCHhHHHH-HHhccC-CCcccccccEEEEecccccccCCchhH
Q 000129 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 571 ~~~~~~~g--i~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~-l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.++...++ +.+..++||...++.. .+.++|++|||.+|+. ++|... ....++++++||+||+|.+-.-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988777 8999999999887763 5789999999999976 555542 245567899999999999988899999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH---HHhh
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF---QLMN 720 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~~~ 720 (2114)
..++.|+++..+..+.+.|+|+.|||+.|..+.+.-+....-. ..++.+..|-.....+............ ....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~--~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE--VPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce--eeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 9999999999998888999999999999977766555432111 1134444444443333322211001110 1111
Q ss_pred HHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEe
Q 000129 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (2114)
Q Consensus 721 ~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~h 800 (2114)
..-.-.-.....+-++|+|+.||+.++.++...+....... . .+..-+..|
T Consensus 294 ~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~----------------------------~l~~~v~~~ 344 (851)
T COG1205 294 ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G----------------------------KLLDAVSTY 344 (851)
T ss_pred HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h----------------------------hhhhheeec
Confidence 11000111122366999999999999988755544322111 0 111347889
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||+|.+.+|..++..|+.|++.++++|++++-|+|+-++..||....|.+ |..+++||+|||||.+ ..+
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~---------s~~~~~Q~~GRaGR~~--~~~ 413 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV---------SVLSFRQRAGRAGRRG--QES 413 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc---------hHHHHHHhhhhccCCC--CCc
Confidence 99999999999999999999999999999999999999999998443332 6789999999999987 556
Q ss_pred EEEEEcCCCcH
Q 000129 881 EGIIITGHSEL 891 (2114)
Q Consensus 881 ~~iil~~~~e~ 891 (2114)
..+++...+-.
T Consensus 414 l~~~v~~~~~~ 424 (851)
T COG1205 414 LVLVVLRSDPL 424 (851)
T ss_pred eEEEEeCCCcc
Confidence 66666664433
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=328.39 Aligned_cols=327 Identities=20% Similarity=0.326 Sum_probs=253.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
.+..+|. +..|+|-|.++|..++++ +++++..|||+||++||.+|.+-. .| -+|+|.|..+|...+.+.+
T Consensus 8 ~L~~~fG-y~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~------~G--~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 8 VLKQVFG-YASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL------EG--LTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred HHHHHhC-ccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc------CC--CEEEECchHHHHHHHHHHH
Confidence 4566665 999999999999999986 559999999999999999998731 44 7899999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcccc-----hhhccC--CcEEEEChhhHHH--HHhhhcccccccceeEEEecccccccCCCC
Q 000129 1411 EIKFGQGLGMRVVELTGETAMD-----LKLLEK--GQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~-----~~~l~~--~~IIV~TPe~l~~--l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+. .|+.+..+.+..+.+ ...+.. -++++-+||++.. +... ..-..+.+++|||||++..| |
T Consensus 78 ~~-----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~----L~~~~i~l~vIDEAHCiSqW-G 147 (590)
T COG0514 78 EA-----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL----LKRLPISLVAIDEAHCISQW-G 147 (590)
T ss_pred HH-----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH----HHhCCCceEEechHHHHhhc-C
Confidence 73 278899988876654 223444 3899999999743 2221 11456899999999999755 5
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhc
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 1559 (2114)
+.+..-..++..+...++ ++.++++|||... ..|+.+-|+.....+|. .+++.++........
T Consensus 148 hdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--------------~sfdRpNi~~~v~~~ 212 (590)
T COG0514 148 HDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR--------------GSFDRPNLALKVVEK 212 (590)
T ss_pred CccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--------------ecCCCchhhhhhhhc
Confidence 666666677777766666 8899999999765 35888888877644443 222323322222111
Q ss_pred C--HHHHHHHHH-HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1560 T--KPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1560 ~--~~~~~~i~~-~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
. ...+..+.. .....++.||||.||+.|+.+|..|... +..+
T Consensus 213 ~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~-----------------------------------g~~a 257 (590)
T COG0514 213 GEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN-----------------------------------GISA 257 (590)
T ss_pred ccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC-----------------------------------CCce
Confidence 1 111112222 1145667999999999999999877431 4568
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
++|||||+.++|..+++.|..++++|+|||..+.+|||-|++++|| |++.|.|+.+|.|-+|||||. +
T Consensus 258 ~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----------H~~lP~s~EsYyQE~GRAGRD--G 325 (590)
T COG0514 258 GAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----------HYDLPGSIESYYQETGRAGRD--G 325 (590)
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----------EecCCCCHHHHHHHHhhccCC--C
Confidence 9999999999999999999999999999999999999999999999 999999999999999999998 6
Q ss_pred CceEEEEEeecCcHHHHHHHHHh
Q 000129 1717 NSGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
....|++++...+....+.++..
T Consensus 326 ~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 326 LPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CcceEEEeeccccHHHHHHHHHh
Confidence 89999999999887776666643
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-30 Score=348.55 Aligned_cols=433 Identities=14% Similarity=0.159 Sum_probs=285.3
Q ss_pred CCCCCHHHH--HHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1339 FKHFNPIQT--QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1339 f~~~~~iQ~--q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
|..--|+.. +.|...+.+++.++|+|+||||||+.....++.. .....+ ++++..|+|-.|..++.++.+.++.
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~--~~~~~~--~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL--GRGSHG--LIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc--CCCCCc--eEecCCccHHHHHHHHHHHHHHhCC
Confidence 333344443 4455555678889999999999999654444432 111233 8889999999999999999988876
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc-ccCCCCchHHHHHHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~-l~~~~g~~le~i~srl~~i~ 1495 (2114)
..|..|+.-.. .+.+.-.+++|+|+|||.+...+.. ...+.++++|||||||. ..+ ...++..++.+.
T Consensus 138 ~lG~~VGY~vR---~~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il 206 (1283)
T TIGR01967 138 PLGEKVGYKVR---FHDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLL 206 (1283)
T ss_pred CcceEEeeEEc---CCcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhcc-----chhHHHHHHHHH
Confidence 56666654322 2222234678999999998766543 56789999999999993 332 222444455554
Q ss_pred hhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccch---HHHHHhcCHHHHHHHHHHh-
Q 000129 1496 SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF---EARMQAMTKPTFTAIVQHA- 1571 (2114)
Q Consensus 1496 ~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~l- 1571 (2114)
.. .++.|+|+||||+ +...++++++..+ ++.... +..|+++++........ ..... .....+....
T Consensus 207 ~~-rpdLKlIlmSATl-d~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~ 276 (1283)
T TIGR01967 207 PR-RPDLKIIITSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFA 276 (1283)
T ss_pred hh-CCCCeEEEEeCCc-CHHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHh
Confidence 33 4578999999999 5778999997543 444333 44455555433221110 01111 1111222111
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+.+|||+|++++++.++..|..... ....|..+||+|+.++|..+
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~v 324 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAEILRKRNL--------------------------------RHTEILPLYARLSNKEQQRV 324 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHHHHHhcCC--------------------------------CCcEEEeccCCCCHHHHHHH
Confidence 2457899999999999999877743210 01247889999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEE-e---eeEecCCcCcC----CCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~-g---t~~yd~~~~~~----~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
++.+ +..+|||||+++++|||+|++.+||. | ...|+.+.+.. .+.|.++|.||+|||||. ..|.||.
T Consensus 325 f~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~---~~G~cyR 399 (1283)
T TIGR01967 325 FQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---APGICIR 399 (1283)
T ss_pred hCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC---CCceEEE
Confidence 7654 34799999999999999999999993 2 35677664432 467889999999999996 4999999
Q ss_pred EeecCcHHHHHHHHHhccCCCCc--------------cccCCCcc-chHHHHHHHHHHHHHHHHHCCCceecCCCccccC
Q 000129 1724 LCHAPRKEYYKKFLRLTQNPNYY--------------NLQGVSHR-HLSDHLSELVENTISDLEASKCIIIEEDMDLSPS 1788 (2114)
Q Consensus 1724 l~~~~~~~~~~~~lRl~~nP~~y--------------~l~~~s~~-~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t 1788 (2114)
+++..+...... ...|... ++.++... -++..-.+.+..++..|.+.|+|+.++ .....|
T Consensus 400 Lyte~~~~~~~~----~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~-~~~~LT 474 (1283)
T TIGR01967 400 LYSEEDFNSRPE----FTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDE-AEPQLT 474 (1283)
T ss_pred ecCHHHHHhhhh----ccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCcccc
Confidence 998654332221 1222211 11111110 111223578999999999999996332 125789
Q ss_pred cccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1789 NHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1789 ~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
++|+.++.+|++|...++++.+....+ ...++.|.|.-++ .+...|+.++
T Consensus 475 ~lGr~ma~LPldPrlarmLl~a~~~gc-l~e~l~IaA~Ls~-~dp~~~p~~~ 524 (1283)
T TIGR01967 475 PIGRQLAQLPVDPRLARMLLEAHRLGC-LQEVLIIASALSI-QDPRERPMEK 524 (1283)
T ss_pred HHHHHHhhcCCChHHHHHHHHhhhcCC-HHHHHHHHHHHcC-CCcCCCcchh
Confidence 999999999999999999998766543 3555555554333 4444455444
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=312.15 Aligned_cols=479 Identities=17% Similarity=0.179 Sum_probs=329.6
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCC
Q 000129 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~g 578 (2114)
+-.+.+ .++..+..++|.|.||||||+.....+...- ....+.+|-+..|.|--|..++.++.+ .+|
T Consensus 269 ykdell-~av~e~QVLiI~GeTGSGKTTQiPQyL~EaG---------ytk~gk~IgcTQPRRVAAmSVAaRVA~---EMg 335 (902)
T KOG0923|consen 269 YKDELL-KAVKEHQVLIIVGETGSGKTTQIPQYLYEAG---------YTKGGKKIGCTQPRRVAAMSVAARVAE---EMG 335 (902)
T ss_pred hHHHHH-HHHHhCcEEEEEcCCCCCccccccHHHHhcc---------cccCCceEeecCcchHHHHHHHHHHHH---HhC
Confidence 333444 4567778899999999999998655444321 222345699999999999999988876 446
Q ss_pred cEEEEEeC-CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 579 VKVRELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 579 i~v~~l~G-d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
++.+--.| ...+.+.....+-|-++|.+ +|.|.......+..+++|||||||. |.-... |+-.++..+...
T Consensus 336 vkLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHE----RTL~TD-ILfgLvKDIar~ 407 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHE----RTLHTD-ILFGLVKDIARF 407 (902)
T ss_pred cccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhh----hhhhhh-HHHHHHHHHHhh
Confidence 66554444 23444444567889999999 6777776668889999999999994 322233 333333444445
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
++..+++..|||+ +++.+..|+.. .++|.+.+.-.||.+ .|- .......+.+....+.+ |....+.+.+|
T Consensus 408 RpdLKllIsSAT~-DAekFS~fFDd---apIF~iPGRRyPVdi--~Yt---~~PEAdYldAai~tVlq-IH~tqp~GDIL 477 (902)
T KOG0923|consen 408 RPDLKLLISSATM-DAEKFSAFFDD---APIFRIPGRRYPVDI--FYT---KAPEADYLDAAIVTVLQ-IHLTQPLGDIL 477 (902)
T ss_pred CCcceEEeecccc-CHHHHHHhccC---CcEEeccCcccceee--ecc---cCCchhHHHHHHhhhee-eEeccCCccEE
Confidence 7899999999997 78999999974 457887776666544 222 22222222222211111 11223367899
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
||.....+.+.+...|.+....... ...+ .-|...||+|+.+.+..|++--.
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGs-------------------------ki~e---liv~PiYaNLPselQakIFePtP 529 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGS-------------------------KIRE---LIVLPIYANLPSELQAKIFEPTP 529 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhcc-------------------------ccce---EEEeeccccCChHHHHhhcCCCC
Confidence 9999999998888887765322111 0111 12556799999999999999999
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEec----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
.|..+|++||++++.++.++++.+||+. ...|+|.+|.. +++|.++..||+|||||.| +|+|+.+++..
T Consensus 530 ~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 530 PGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred CCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh
Confidence 9999999999999999999999999984 35689998854 7899999999999999985 89999999864
Q ss_pred cHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhH
Q 000129 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (2114)
Q Consensus 890 e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~ 969 (2114)
.....+..+ ..| |- ....|.......-++|. .|.++| +.++.+..
T Consensus 607 aY~~eLE~~--t~P-EI-qRtnL~nvVL~LkSLGI----~Dl~~F---------------------------dFmDpPp~ 651 (902)
T KOG0923|consen 607 AYEHELEEM--TVP-EI-QRTNLGNVVLLLKSLGI----HDLIHF---------------------------DFLDPPPT 651 (902)
T ss_pred hhhhhhccC--CCc-ce-eeccchhHHHHHHhcCc----chhccc---------------------------ccCCCCCh
Confidence 422222111 112 11 11233333333333331 222221 11222334
Q ss_pred HHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHH
Q 000129 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (2114)
Q Consensus 970 ~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~ 1049 (2114)
+.+..||+.|..+|++.- ...+|.+||.||.|+++|...+++..+-+..|+ .+++.|.||.+.+..++.|+.++
T Consensus 652 etL~~aLE~LyaLGALn~-----~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~ 725 (902)
T KOG0923|consen 652 ETLLKALEQLYALGALNH-----LGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDK 725 (902)
T ss_pred HHHHHHHHHHHHhhcccc-----ccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhh
Confidence 567789999999999973 358999999999999999999999988888876 89999999999999999999987
Q ss_pred HHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccC
Q 000129 1050 MELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2114)
Q Consensus 1050 ~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2114)
..-..-..+ + +..+.+--.++|+-|-+...-
T Consensus 726 ~v~ad~a~~---~----f~~~~gDhi~~L~vyn~w~es 756 (902)
T KOG0923|consen 726 QVHADNARK---N----FEEPVGDHIVLLNVYNQWKES 756 (902)
T ss_pred hhhhhhhhh---c----cCCCCcchhhhhHHHHHHhhc
Confidence 543321111 1 223344556788888776544
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=304.80 Aligned_cols=346 Identities=18% Similarity=0.253 Sum_probs=264.1
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
-.+|+.+.++.+|. ||..|+.||+.|+..+..+.+ +++.+++|+|||.+|.+++++.+... .....|++++|+|+|
T Consensus 30 dm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--~ke~qalilaPtreL 106 (397)
T KOG0327|consen 30 DMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--VKETQALILAPTREL 106 (397)
T ss_pred hcCCCHHHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--hHHHHHHHhcchHHH
Confidence 34566788999998 899999999999999988655 99999999999999999999987553 223389999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
|.|..+... .++...+.+|..+.|+.... ...+. ..+|+|+||++...++.+. ......+.++|+||++.+.+
T Consensus 107 a~qi~~v~~-~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--~l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 107 AQQIQKVVR-ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--SLSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHH-hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--cccccceeEEeecchHhhhc
Confidence 999997776 67777889999888876654 22233 3599999999998888762 44566799999999998876
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.+ +...+..+..+++.+.|++++|||.+.. .++.+-+...+..+..-... ..++-..+.+....-
T Consensus 184 ~g------fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---ltl~gikq~~i~v~k----- 249 (397)
T KOG0327|consen 184 RG------FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---LTLEGIKQFYINVEK----- 249 (397)
T ss_pred cc------hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh---hhhhheeeeeeeccc-----
Confidence 65 6677777888889999999999999863 34554443332211110000 001100000000000
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
.+.+..+........+++|||||++.+..+...|. ..++.+.
T Consensus 250 ---~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~-----------------------------------~~~~~~s 291 (397)
T KOG0327|consen 250 ---EEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLR-----------------------------------AHGFTVS 291 (397)
T ss_pred ---cccccHHHHHHHhhhcceEEecchhhHHHHHHHHh-----------------------------------hCCceEE
Confidence 00112222222356789999999999987775552 2345688
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+|+.|.+.+|..+...|++|..+|||.|+.+++|+|+..+..|| +++.|....+|+||+||+||. +.
T Consensus 292 ~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi----------nydlP~~~~~yihR~gr~gr~--gr 359 (397)
T KOG0327|consen 292 AIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV----------NYDLPARKENYIHRIGRAGRF--GR 359 (397)
T ss_pred EeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee----------eeccccchhhhhhhccccccc--CC
Confidence 999999999999999999999999999999999999999999999 999999999999999999996 79
Q ss_pred ceEEEEEeecCcHHHHHHHHHh
Q 000129 1718 SGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
+|.++-++.+.+...+++..+.
T Consensus 360 kg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 360 KGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred CceeeeeehHhhHHHHHhHHHh
Confidence 9999999999888877777643
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=336.30 Aligned_cols=326 Identities=17% Similarity=0.164 Sum_probs=212.5
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
++..+ .||+ |+|||.++++.++.+.++++++||||||||.++.++++.. .... ....+.||++|||+||.
T Consensus 7 ff~~~-~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~-------~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 7 WYQGL-HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGA-------KVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHH-hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccc-------cccceEEEeCchHHHHH
Confidence 34443 4887 9999999999999887778999999999999765444422 1110 11236677889999999
Q ss_pred HHHHHHHHhhccC-----------------------CcEEEEEeCCCccChhhh---ccceEEEcCHhHHHHHHhccC--
Q 000129 565 EVVGNLSNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSG-- 616 (2114)
Q Consensus 565 q~~~~~~~~~~~~-----------------------gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPek~d~l~r~~~-- 616 (2114)
|+++.+.++.+.+ ++++..++|+.....+.. ..++|||+|++ .+.++..
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~ 153 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFS 153 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccc
Confidence 9999999877644 488999999988766543 46899999975 4433321
Q ss_pred -----------CCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccc
Q 000129 617 -----------DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (2114)
Q Consensus 617 -----------~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~ 684 (2114)
....+++++++|+|||| +...+...++.|+..+.+ .....+.|+++||||+|. ..+....+...+
T Consensus 154 gYg~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 154 GYGCGFKSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred ccccccccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 11136889999999999 433565666655554210 001123689999999984 223333332221
Q ss_pred cCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccc
Q 000129 685 EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764 (2114)
Q Consensus 685 ~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~ 764 (2114)
. .+..........-..+++.... ..++..+...+.... ...++++||||||++.|..+++.|...+
T Consensus 231 ~--~i~V~~~~l~a~ki~q~v~v~~---e~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------- 296 (844)
T TIGR02621 231 Y--KHPVLKKRLAAKKIVKLVPPSD---EKFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKEK------- 296 (844)
T ss_pred c--eeecccccccccceEEEEecCh---HHHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhcC-------
Confidence 1 1111111111111112222111 111211111111111 1236789999999999999999987532
Q ss_pred cccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH-----HHHHHHhC----CC-------ceEEEech
Q 000129 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTA 828 (2114)
Q Consensus 765 ~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~-----~v~~~F~~----g~-------i~VLVaT~ 828 (2114)
+..+||+|++.+|. .+++.|++ |. .+|||||+
T Consensus 297 --------------------------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd 344 (844)
T TIGR02621 297 --------------------------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS 344 (844)
T ss_pred --------------------------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc
Confidence 34569999999999 78999987 44 78999999
Q ss_pred HhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 829 tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
++++|||++. .+||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 345 VaerGLDId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 345 AGEVGVNISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hhhhcccCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999998 56665 222 35689999999999885433434444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=307.70 Aligned_cols=347 Identities=20% Similarity=0.290 Sum_probs=267.1
Q ss_pred CCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1321 PLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1321 p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.++...|....++++.. ||..|+|+|++.+|.++++.+ ++-.|-||||||.||.+|+++++.... ..+.|++++.|+
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralilspt 99 (529)
T KOG0337|consen 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPT 99 (529)
T ss_pred CccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCc
Confidence 34556677788888876 799999999999999999777 999999999999999999999999865 556799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc
Q 000129 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1400 r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l 1476 (2114)
++|+.|+.+.++ .+++..+++.+.++|+.+...+ .+ .++|||++||+++..+.-.. ...++.|.+||+||++.|
T Consensus 100 reLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem--~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 100 RELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM--TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred HHHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--eccccceeeeeehhhhHH
Confidence 999999999888 7999889999988887665532 33 46799999999987665542 346899999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1477 ~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
.+.+ +..++..+..+++...|.++||||+|+. +.++-.+.. ..|+-+...+..--........
T Consensus 177 femg------fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl---------~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 177 FEMG------FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGL---------VPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred Hhhh------hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccC---------CCCceEEeehhhhcchhhhhhe
Confidence 7665 7788888888888889999999999854 444443332 1222222211111111111111
Q ss_pred HhcCH----HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1557 QAMTK----PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1557 ~~~~~----~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
....+ .....++......++++|||+|+..++.+...| ...
T Consensus 240 ~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll-----------------------------------~~~ 284 (529)
T KOG0337|consen 240 FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL-----------------------------------RDF 284 (529)
T ss_pred eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH-----------------------------------Hhc
Confidence 11111 112222222233457999999999997766433 223
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+.++..++|.|.+..|..-...|+.++..+||.|++++||+|+|-..-|| +++.|....-|+||+||+.|
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi----------nyd~p~~~klFvhRVgr~ar 354 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI----------NYDFPPDDKLFVHRVGRVAR 354 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc----------cccCCCCCceEEEEecchhh
Confidence 55678899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHHHHHHH
Q 000129 1713 PLLDNSGKCVILCHAPRKEYYKKF 1736 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~~~~~~ 1736 (2114)
+ +..|.+|.++.+.+..|+-.+
T Consensus 355 a--grtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 355 A--GRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred c--cccceEEEEEecccchhhhhh
Confidence 8 689999999998876665433
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=337.04 Aligned_cols=346 Identities=21% Similarity=0.315 Sum_probs=254.6
Q ss_pred CCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEE
Q 000129 1321 PLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYI 1396 (2114)
Q Consensus 1321 p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I 1396 (2114)
.|....+....+..+-. ||..++|||.||+|+++.+++ ||..|-||||||++|.||+++|..... .+.+|.++++
T Consensus 366 sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred hHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 33344555556666633 688999999999999999777 999999999999999999999887642 2336799999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhccc-ccccceeEEEecc
Q 000129 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDE 1472 (2114)
Q Consensus 1397 ~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~-~~l~~v~liIiDE 1472 (2114)
+|||+|+.|+.+.++ .|.+.+|+++++.+|+.... ...++ .+.|+||||++...++-....+ .++.++.++|+||
T Consensus 445 aPtrela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 445 APTRELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred cCCHHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999999888 78888999999999987765 22333 4599999999987766543333 2667777999999
Q ss_pred cccccCCC-CchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCC--CccCcEEEEeccc
Q 000129 1473 LHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVD 1548 (2114)
Q Consensus 1473 aH~l~~~~-g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~ 1548 (2114)
||.+.+.+ -|..-. |...+++..|.+++|||++.. ..++.-.-..+..+..-..+. .-+...+.+....
T Consensus 524 aDrmfdmgfePq~~~-------Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e 596 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITR-------ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE 596 (997)
T ss_pred hhhhheeccCcccch-------HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc
Confidence 99998643 333222 334446789999999999874 234443332222211111000 1111122222111
Q ss_pred ccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHH
Q 000129 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2114)
Q Consensus 1549 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2114)
...+.. ...++......+++||||.+...|..+...|..
T Consensus 597 ~eKf~k---------L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-------------------------------- 635 (997)
T KOG0334|consen 597 NEKFLK---------LLELLGERYEDGKTIIFVDKQEKADALLRDLQK-------------------------------- 635 (997)
T ss_pred hHHHHH---------HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh--------------------------------
Confidence 111111 122222225689999999999999999888753
Q ss_pred HHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHc
Q 000129 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1629 ~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2114)
.++.+..+|||.++.+|..+++.|++|.+.+||||+++++|+|++...+|| ||++|--..+|+||+|
T Consensus 636 ---ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv----------nyd~pnh~edyvhR~g 702 (997)
T KOG0334|consen 636 ---AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV----------NYDFPNHYEDYVHRVG 702 (997)
T ss_pred ---cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE----------EcccchhHHHHHHHhc
Confidence 122344589999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCCceEEEEEeecCcHH
Q 000129 1709 HASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
|+||+ +..|.|+.|..+.+..
T Consensus 703 RTgra--grkg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 703 RTGRA--GRKGAAVTFITPDQLK 723 (997)
T ss_pred ccccC--CccceeEEEeChHHhh
Confidence 99999 6899999999885443
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=310.06 Aligned_cols=423 Identities=16% Similarity=0.161 Sum_probs=307.3
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
++.++.++|.|+||||||+.....+.+.-.. ..| ++.|..|+|--|..++++.....+..+|-.|+...-- +.
T Consensus 63 ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF---ed 135 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--SSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF---ED 135 (674)
T ss_pred HHHCCEEEEEcCCCCCccccHhHHHHhcccc--cCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe---cc
Confidence 3568889999999999999876666654333 244 6999999999999999999988887777777665431 11
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
..-..+.|.+.|.+. ++|.....+.+..+++||+|||| +|.-.-..++.-++.+.+. +++.++|.+|||+ |
T Consensus 136 ~ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki~~~-R~~LklIimSATl-d 206 (674)
T KOG0922|consen 136 STSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKILKK-RPDLKLIIMSATL-D 206 (674)
T ss_pred cCCCceeEEEecchH---HHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHHHhc-CCCceEEEEeeee-c
Confidence 122366899999998 55666668899999999999999 4445556678888877654 5689999999999 8
Q ss_pred hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHH
Q 000129 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (2114)
Q Consensus 1514 ~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~ 1593 (2114)
++.|++|++..+ ++.. ..|..|+++.+...+..+|..... .....|... .+.+.+|||.+++++.+.++..
T Consensus 207 a~kfS~yF~~a~--i~~i--~GR~fPVei~y~~~p~~dYv~a~~----~tv~~Ih~~-E~~GDILvFLtGqeEIe~~~~~ 277 (674)
T KOG0922|consen 207 AEKFSEYFNNAP--ILTI--PGRTFPVEILYLKEPTADYVDAAL----ITVIQIHLT-EPPGDILVFLTGQEEIEAACEL 277 (674)
T ss_pred HHHHHHHhcCCc--eEee--cCCCCceeEEeccCCchhhHHHHH----HHHHHHHcc-CCCCCEEEEeCCHHHHHHHHHH
Confidence 999999998843 4444 346667777776655555544321 112223333 5667899999999999999988
Q ss_pred HHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccc
Q 000129 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gv 1673 (2114)
|.+......... ..-+..+||.|+.+++..|+..-..|..+|++||++++.++
T Consensus 278 l~e~~~~~~~~~---------------------------~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 278 LRERAKSLPEDC---------------------------PELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSL 330 (674)
T ss_pred HHHHhhhccccC---------------------------cceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeE
Confidence 866543222110 01267899999999999999999999999999999999999
Q ss_pred CCCCcEEEE----EeeeEecCCcCcC----CCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH--------
Q 000129 1674 PLTAHLVVV----MGTQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL-------- 1737 (2114)
Q Consensus 1674 dip~~~vVI----~gt~~yd~~~~~~----~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l-------- 1737 (2114)
.+|++.+|| .....|+++.+.+ .|.|.++..||.||||| ..+|+|+.++.+.+. .++.
T Consensus 331 TI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGR---t~pGkcyRLYte~~~---~~~~~~~~PEI~ 404 (674)
T KOG0922|consen 331 TIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGR---TGPGKCYRLYTESAY---DKMPLQTVPEIQ 404 (674)
T ss_pred EecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCC---CCCceEEEeeeHHHH---hhcccCCCCcee
Confidence 999999999 3457888886654 48899999999999999 469999999987654 3333
Q ss_pred HhccCCCCc-----cccCCC-ccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCc-ccchhhhcccCHhHHHHHHhh
Q 000129 1738 RLTQNPNYY-----NLQGVS-HRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSN-HGMIASYYYISYTTIERFSSS 1810 (2114)
Q Consensus 1738 Rl~~nP~~y-----~l~~~s-~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~-lG~i~s~y~i~~~T~~~f~~s 1810 (2114)
|....+... ++.++- ..-++..-.+.+..++..|...|+|+- ++ ..|+ +|..|+.++++|...++++.+
T Consensus 405 R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~--~g--~lt~p~G~~ma~~Pl~p~lsk~ll~s 480 (674)
T KOG0922|consen 405 RVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDD--RG--KLTSPLGRQMAELPLEPHLSKMLLKS 480 (674)
T ss_pred eechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccC--cC--CcCchHHhhhhhcCCCcchhhhhhhc
Confidence 111001111 111111 111222345788999999999999952 22 3444 999999999999999999986
Q ss_pred cCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1811 LTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1811 l~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
-...+. .+++.|.|.-+ -.++-.|..+.
T Consensus 481 ~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 481 SELGCS-EEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred cccCCc-chhhhheeeee-ccceecCccch
Confidence 655554 56666666544 44554554443
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=331.26 Aligned_cols=390 Identities=15% Similarity=0.103 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHH---------HHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICS---------EFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~---------~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
.+|.++++.+.+++ ++++.|+||||||.+. +++.+..+.... .....+++|++|||+||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 47899999998755 5999999999999973 334444432211 112238999999999999999998865
Q ss_pred hcC--CCCcEEEEEcCCcccch--hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1414 FGQ--GLGMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1414 f~~--~~g~~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
.+- ..|..+....|+.+... ......+|+|+|++. ....+.++++||+||||...... .. ++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~~-Dl---lL~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQIG-DI---IIA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccch-hH---HHH
Confidence 542 24677888888876431 122355899999753 11247889999999999875432 22 333
Q ss_pred HHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEeccccc-ch-HHHHHhcCHHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NF-EARMQAMTKPTFTA 1566 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 1566 (2114)
.++... +...|+++||||++. .+.+..|++... .+.... ....|++.+....... .. ..............
T Consensus 313 llk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 313 VARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 333222 223489999999974 567888887432 333322 1124455443221110 00 00000001112222
Q ss_pred HHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1567 i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
+.... ..++++|||||++.+|..++..|.... .+..+..+||+|++
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCH
Confidence 22221 235689999999999999887663211 12458899999997
Q ss_pred HHHHHHHHHH-hcCCceEEEecCccccccCCCCcEEEEEeeeEe--cCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1646 TDQEVVSALF-EAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY--DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1646 ~dR~~v~~~F-~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~y--d~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
. ..+++.| ++|+.+|||||+++++|||+|++.+||-....+ +.......+.|.++|.||+|||||. .+|.|+
T Consensus 434 ~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~ 508 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYV 508 (675)
T ss_pred H--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEE
Confidence 5 4556666 789999999999999999999999999221101 1111234567999999999999995 689999
Q ss_pred EEeecCcHHHHHHHH-----HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcc--cchhh
Q 000129 1723 ILCHAPRKEYYKKFL-----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNH--GMIAS 1795 (2114)
Q Consensus 1723 il~~~~~~~~~~~~l-----Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~l--G~i~s 1795 (2114)
.+++......+++.. .+...-...|+......-++..-.+.++.|++.|...|+.. + ..|.+ |+-++
T Consensus 509 rLyt~~~~~pI~ri~~~~L~~~vL~lk~~g~~~~~~~~ldpP~~~~l~~A~~~L~~lga~~--~----~l~~l~~~~~~~ 582 (675)
T PHA02653 509 YFYDLDLLKPIKRIDSEFLHNYILYAKYFNLTLPEDLFVIPSNLDRLRKTEEYIDSFNISI--E----KWYEILSNYYVN 582 (675)
T ss_pred EEECHHHhHHHHHHhHHHHHHHHHHHHHcCCCCcccccCCCCCHHHHHHHHHHHHHcCCCc--h----hhhhhhccccHH
Confidence 999876533222221 00000001122111111122223578999999999999752 2 35555 65555
Q ss_pred hc
Q 000129 1796 YY 1797 (2114)
Q Consensus 1796 ~y 1797 (2114)
..
T Consensus 583 ~~ 584 (675)
T PHA02653 583 ML 584 (675)
T ss_pred HH
Confidence 54
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=308.06 Aligned_cols=441 Identities=17% Similarity=0.166 Sum_probs=321.9
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v 1422 (2114)
.++-.+.+.++ +.++.++|.|.||||||+.....+...=.. .++.++-|..|+|..|..++.+..+.++..+|..|
T Consensus 267 y~ykdell~av-~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAV-KEHQVLIIVGETGSGKTTQIPQYLYEAGYT---KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHH-HhCcEEEEEcCCCCCccccccHHHHhcccc---cCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 44455556555 458889999999999998765555432222 22325889999999999999999988876666666
Q ss_pred EEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCc
Q 000129 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKI 1502 (2114)
Q Consensus 1423 ~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~ 1502 (2114)
+.-.. .....-.++-|-++|.|+ |+|.....+.+.++++||||||| +|......++..++.|.+. ++++
T Consensus 343 GYsIR---FEdcTSekTvlKYMTDGm---LlREfL~epdLasYSViiiDEAH----ERTL~TDILfgLvKDIar~-RpdL 411 (902)
T KOG0923|consen 343 GYSIR---FEDCTSEKTVLKYMTDGM---LLREFLSEPDLASYSVIIVDEAH----ERTLHTDILFGLVKDIARF-RPDL 411 (902)
T ss_pred ceEEE---eccccCcceeeeeecchh---HHHHHhccccccceeEEEeehhh----hhhhhhhHHHHHHHHHHhh-CCcc
Confidence 54322 111122456788999998 56666667889999999999999 3334445577777777654 6899
Q ss_pred eEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeC
Q 000129 1503 RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVP 1582 (2114)
Q Consensus 1503 riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~ 1582 (2114)
+++..|||+ +++.|..|++..+ +|.++. |..|+.+++...+..++...... ....|... .+.+.+|||..
T Consensus 412 KllIsSAT~-DAekFS~fFDdap--IF~iPG--RRyPVdi~Yt~~PEAdYldAai~----tVlqIH~t-qp~GDILVFlt 481 (902)
T KOG0923|consen 412 KLLISSATM-DAEKFSAFFDDAP--IFRIPG--RRYPVDIFYTKAPEADYLDAAIV----TVLQIHLT-QPLGDILVFLT 481 (902)
T ss_pred eEEeecccc-CHHHHHHhccCCc--EEeccC--cccceeeecccCCchhHHHHHHh----hheeeEec-cCCccEEEEec
Confidence 999999998 8999999998765 677655 55566677666555555432210 01111112 45688999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKV 1662 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~V 1662 (2114)
.....+.+...|...+..-+..-+ ..-|..+|+.|+.+.+..|++.-..|..+|
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~--------------------------eliv~PiYaNLPselQakIFePtP~gaRKV 535 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIR--------------------------ELIVLPIYANLPSELQAKIFEPTPPGARKV 535 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccc--------------------------eEEEeeccccCChHHHHhhcCCCCCCceeE
Confidence 999988887777555432222111 112788999999999999999999999999
Q ss_pred EEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1663 CVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1663 LVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
++||++++.++.|+++.+|| .....|+++++. -.|+|.++..||+|||||. .+|+|+.+++. ..|.
T Consensus 536 VLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt---gPGKCfRLYt~---~aY~ 609 (902)
T KOG0923|consen 536 VLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT---GPGKCFRLYTA---WAYE 609 (902)
T ss_pred EEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC---CCCceEEeech---hhhh
Confidence 99999999999999999999 233567777554 4589999999999999995 59999999974 4566
Q ss_pred HHHHhccCCCCc---------cccCCCccchHH------HHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhccc
Q 000129 1735 KFLRLTQNPNYY---------NLQGVSHRHLSD------HLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799 (2114)
Q Consensus 1735 ~~lRl~~nP~~y---------~l~~~s~~~l~~------~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i 1799 (2114)
+.+....-|... .|+++...++-. ...+.+-++|..|...|++.- ....|.+|+.|+.||+
T Consensus 610 ~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~----~GeLTk~GrrMaEfP~ 685 (902)
T KOG0923|consen 610 HELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNH----LGELTKLGRRMAEFPV 685 (902)
T ss_pred hhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcccc----ccchhhhhhhhhhcCC
Confidence 666554444322 112222222221 235778889999999999943 4568999999999999
Q ss_pred CHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHH
Q 000129 1800 SYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRR 1845 (2114)
Q Consensus 1800 ~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~ 1845 (2114)
+|...+++..+-+..++ .+|+.|.|..+.+..+..|+.+...-+.
T Consensus 686 dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~v~ad 730 (902)
T KOG0923|consen 686 DPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQVHAD 730 (902)
T ss_pred CHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhhhhhh
Confidence 99999999987777755 7899999999999999999888655433
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=316.91 Aligned_cols=301 Identities=21% Similarity=0.246 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc-
Q 000129 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~- 576 (2114)
+|.++++.+++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.|+++++.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999998875 68999999999999999998842 126899999999999999999998753
Q ss_pred ---CCcEEEEEeCCCccChh-----------------------hhccceEEEcCHhHHHHHHhccCC------Ccccccc
Q 000129 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSGD------RTYTQLV 624 (2114)
Q Consensus 577 ---~gi~v~~l~Gd~~~~~~-----------------------~~~~~~IiV~TPek~d~l~r~~~~------~~~l~~v 624 (2114)
.++.+..++|+...+.+ ....++|++|||+.|+.++|.+.. ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36778888887322200 013578999999999988876421 1246889
Q ss_pred cEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc--ccCceEeecC---------
Q 000129 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN--------- 693 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~--~~~~~~~f~~--------- 693 (2114)
++|||||+|.+.......+...+.. ...++......|+++||||+|. .+..++... ....+....+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAY-MQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHH-HHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 9999999999875333333322221 1222222335799999999873 445554421 1111111111
Q ss_pred ---------Ccccc--cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccc
Q 000129 694 ---------SYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (2114)
Q Consensus 694 ---------~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (2114)
.+||+ ++...+.. ........+..+.+.+.+.+ +...++++||||+|++.++.++..|++.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~--- 298 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGLG--- 298 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCCC---
Confidence 23443 33333332 11111111111212111111 1124679999999999999999999764211
Q ss_pred cccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEE
Q 000129 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (2114)
Q Consensus 763 l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV 842 (2114)
..+..+||.+++.+|..+ +..+|||||+++++|||+|.+. |
T Consensus 299 --------------------------------~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~-v 339 (357)
T TIGR03158 299 --------------------------------DDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDW-L 339 (357)
T ss_pred --------------------------------ceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCce-E
Confidence 235678999999998654 4789999999999999999874 4
Q ss_pred EecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
| ++|. +..+|+||+||+|
T Consensus 340 i-----~~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-----FSAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred E-----ECCC-------CHHHHhhhcccCC
Confidence 4 2332 6779999999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=341.48 Aligned_cols=352 Identities=20% Similarity=0.256 Sum_probs=264.6
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
...+.. |+..|+++|.+|+..+.++ +|+||+.|||||||.||++||++++.+ .+.. ++|||.||+|||+.+.+++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a--~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLR-DPSA--RALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhh-CcCc--cEEEEechhhhHhhHHHHH
Confidence 334433 6777999999999999885 679999999999999999999999998 3444 8999999999999999999
Q ss_pred HHHhcCCC-CcEEEEEcCCcccchh---hccCCcEEEEChhhHHH-HHhhhcccc-cccceeEEEecccccccCCCCchH
Q 000129 1411 EIKFGQGL-GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDA-LSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1411 ~~~f~~~~-g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~-l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
++...... ++++..++|++....+ .-+.++|+++||.+|.. ++|.+.... .++++++||+||+|.+.+-.|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 95444442 4889999999988755 24566999999999988 444432222 467799999999999998889999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH--HhcCHH
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM--QAMTKP 1562 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~--~~~~~~ 1562 (2114)
..++.|++.+....+.+.|+|+.|||++|..+++.-+........ +..+..|-.....+...+........ ......
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~ 294 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH
Confidence 999999999999888999999999999998877765544433331 33344444444443333321111111 011111
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
.-..+...+..+-++|+|+.+++.++.++..........+ ..+...|..||++
T Consensus 295 ~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~---------------------------~~l~~~v~~~~~~ 347 (851)
T COG1205 295 LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG---------------------------GKLLDAVSTYRAG 347 (851)
T ss_pred HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc---------------------------hhhhhheeecccc
Confidence 1222233446788999999999999888744432221111 1123458999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC-CHhHHHHhHcccCCCCCCCceEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY-PVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~-s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
|...+|..++..|+.|++.++++|++++-|+|+-++..|| ....|. +..++.||+|||||.+ ..+..
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi----------~~g~P~~s~~~~~Q~~GRaGR~~--~~~l~ 415 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI----------AYGYPGVSVLSFRQRAGRAGRRG--QESLV 415 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh----------hcCCCCchHHHHHHhhhhccCCC--CCceE
Confidence 9999999999999999999999999999999999999999 566777 8999999999999984 45555
Q ss_pred EEEeec
Q 000129 1722 VILCHA 1727 (2114)
Q Consensus 1722 iil~~~ 1727 (2114)
++....
T Consensus 416 ~~v~~~ 421 (851)
T COG1205 416 LVVLRS 421 (851)
T ss_pred EEEeCC
Confidence 554443
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=330.82 Aligned_cols=320 Identities=19% Similarity=0.213 Sum_probs=203.9
Q ss_pred HHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1332 YEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1332 ~~~l~~---gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
|..+|. ||. |+|||.++++.++.+.++++++||||||||.++..+++..... ....-+.||++|||+||.|+++
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~--~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG--AKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc--ccccceEEEeCchHHHHHHHHH
Confidence 444443 687 9999999999999887779999999999999665444422111 1111155678899999999999
Q ss_pred HHHHHhcCCC-----------------------CcEEEEEcCCcccc--hhhc-cCCcEEEEChhhHHHHHhhhc-----
Q 000129 1409 DWEIKFGQGL-----------------------GMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWK----- 1457 (2114)
Q Consensus 1409 ~~~~~f~~~~-----------------------g~~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~----- 1457 (2114)
.+. ++++.+ ++++..++|+.+.+ ...+ ..++|||+|++.+. ++..
T Consensus 81 ~~~-~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~---sr~L~~gYg 156 (844)
T TIGR02621 81 EAE-KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG---SRLLFSGYG 156 (844)
T ss_pred HHH-HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc---CCccccccc
Confidence 988 455432 47899999998765 2333 34599999965432 2211
Q ss_pred --------ccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc--CC---CceEEEEcccCCC-hhHHHHHhcC
Q 000129 1458 --------QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV--EN---KIRIVALSTSLAN-AKDLGEWIGA 1523 (2114)
Q Consensus 1458 --------~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~--~~---~~riV~lSATl~n-~~dla~wl~~ 1523 (2114)
....+.++.++|+|||| +. .. +...+..|.+.+ +. +.|+++||||++. ..++...+..
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD-Ld-~g------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~ 228 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH-LE-PA------FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA 228 (844)
T ss_pred cccccccchhhhhccceEEEEehhh-hc-cc------cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc
Confidence 00136889999999999 32 22 223333333321 22 3699999999975 2344444443
Q ss_pred CCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHH-HhcCCCCEEEEeCChHHHHHHHHHHHHhhccCC
Q 000129 1524 TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602 (2114)
Q Consensus 1524 ~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~ 1602 (2114)
.+. .+.........+-..++ +.... ..... .....+.. ....++++||||||++.|+.++..|..
T Consensus 229 ~p~-~i~V~~~~l~a~ki~q~--v~v~~-e~Kl~----~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~------ 294 (844)
T TIGR02621 229 EDY-KHPVLKKRLAAKKIVKL--VPPSD-EKFLS----TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK------ 294 (844)
T ss_pred CCc-eeecccccccccceEEE--EecCh-HHHHH----HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh------
Confidence 321 11111111111000111 11111 00110 01111111 113567899999999999999977632
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHH-----HHHHHHhc----CC-------ceEEEec
Q 000129 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE-----VVSALFEA----GK-------IKVCVMS 1666 (2114)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~-----~v~~~F~~----g~-------i~VLVaT 1666 (2114)
.++..+||+|++.+|. .+++.|++ |. .+|||||
T Consensus 295 -------------------------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVAT 343 (844)
T TIGR02621 295 -------------------------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCT 343 (844)
T ss_pred -------------------------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEecc
Confidence 2347899999999999 88999987 54 7899999
Q ss_pred CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1667 ~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
+++++|||++.. +|| +.. .+..+|+||+||+||.|....+.++++
T Consensus 344 dVaerGLDId~d-~VI----------~d~--aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 344 SAGEVGVNISAD-HLV----------CDL--APFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred chhhhcccCCcc-eEE----------ECC--CCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 999999999984 555 222 457999999999999864333434444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=305.80 Aligned_cols=332 Identities=19% Similarity=0.272 Sum_probs=258.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||+.|+|||.+.+|.++++.+ ++..|-||||||.||++|+++.+..+. ..+.+++++.|+++|+.|..+.+
T Consensus 39 kg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~qtlkvv 110 (529)
T KOG0337|consen 39 KGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELALQTLKVV 110 (529)
T ss_pred hhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHHHHHHHH
Confidence 7999999999999999999877 999999999999999999999998774 24579999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhhh---ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (2114)
+...+..++++..++|+.+..++.. .+++||++||+++-.+.-... ..++.|.+||+||++.|.+ ++.+.+..+
T Consensus 111 kdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfqeql~e~ 188 (529)
T KOG0337|consen 111 KDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQEQLHEI 188 (529)
T ss_pred HHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhHHHHHHH
Confidence 9988888899998999888777643 479999999998643333322 4678899999999999988 588888888
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEee-cCCcccc-cceeEEEeeccCchhHHHHHhhHHHH
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRPV-PLSQQYIGIQVKKPLQRFQLMNDLCY 724 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f-~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (2114)
++|+ +...|.++||||+| .++..|.+.....++.+- +-..+-. .++..+..+ ++..+ ... +.
T Consensus 189 l~rl-------~~~~QTllfSatlp--~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~--~~a~K-~aa----Ll 252 (529)
T KOG0337|consen 189 LSRL-------PESRQTLLFSATLP--RDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV--RKAEK-EAA----LL 252 (529)
T ss_pred HHhC-------CCcceEEEEeccCc--hhhHHHHHccCCCCceEEeehhhhcchhhhhheeee--ccHHH-HHH----HH
Confidence 8876 55669999999999 567777776554443321 1111111 111122211 11111 111 11
Q ss_pred HHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCC
Q 000129 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (2114)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl 804 (2114)
..+.......+++|||.|+..++.+...|...+... ...+|.|
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~-------------------------------------s~iyssl 295 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEG-------------------------------------SDIYSSL 295 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCc-------------------------------------ccccccc
Confidence 122233345699999999999999888887765443 3448999
Q ss_pred CHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 000129 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2114)
Q Consensus 805 ~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2114)
++..|..-...|+.++..+||.|++++||+|+|-..-||+++.|-++. -|+||+||+.|+| ..|.+|-
T Consensus 296 D~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k----------lFvhRVgr~arag--rtg~aYs 363 (529)
T KOG0337|consen 296 DQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK----------LFVHRVGRVARAG--RTGRAYS 363 (529)
T ss_pred ChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc----------eEEEEecchhhcc--ccceEEE
Confidence 999999999999999999999999999999999999999966666555 3999999999988 7899999
Q ss_pred EcCCCcHHHHHHh
Q 000129 885 ITGHSELRYYLSL 897 (2114)
Q Consensus 885 l~~~~e~~~~~~l 897 (2114)
++..++..|+..+
T Consensus 364 ~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 364 LVASTDDPYLLDL 376 (529)
T ss_pred EEecccchhhhhh
Confidence 9999888777654
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=301.36 Aligned_cols=333 Identities=21% Similarity=0.365 Sum_probs=247.8
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
++..| -||++|+.||+.||..++.+.+ +++.|++|+|||.+|.+++++.+.... ....+++++|+++|++
T Consensus 38 Lrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~~--------ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 38 LRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMSV--------KETQALILAPTRELAQ 108 (397)
T ss_pred HhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcch--------HHHHHHHhcchHHHHH
Confidence 34444 6999999999999999888754 999999999999999999999874432 3457999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccChh--hh--ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~--~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
|+.+.....+...+++|..+.|+.....+ .+ ..++|+|+||++. +.+.+. ......++++|+||++.+.. +
T Consensus 109 qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 109 QIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeecchHhhhccc
Confidence 99988888888889999999998776532 22 3579999999996 555554 24567799999999998876 6
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2114)
+...+..|... .++++|++++|||+|. ..++++-...++.. +..-.....--...+.++.+.... ++.
T Consensus 186 fkdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~-i~vkk~~ltl~gikq~~i~v~k~~---k~~ 254 (397)
T KOG0327|consen 186 FKDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVR-ILVKKDELTLEGIKQFYINVEKEE---KLD 254 (397)
T ss_pred hHHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceE-EEecchhhhhhheeeeeeeccccc---ccc
Confidence 66666666554 4788999999999985 23333322222111 111111111111222333222221 222
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+.+ +|+ .-.|.+|||||++.+..+...|...+. -+
T Consensus 255 ~l~d-l~~------~~~q~~if~nt~r~v~~l~~~L~~~~~-------------------------------------~~ 290 (397)
T KOG0327|consen 255 TLCD-LYR------RVTQAVIFCNTRRKVDNLTDKLRAHGF-------------------------------------TV 290 (397)
T ss_pred HHHH-HHH------hhhcceEEecchhhHHHHHHHHhhCCc-------------------------------------eE
Confidence 2222 111 356899999999999999988865442 24
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
...|+.|.+.+|..+.+.|+.|..+|||.|+.+|+|+|+-.+.+||+ |+.|. ...+|+||+||+||-|
T Consensus 291 s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g-- 358 (397)
T KOG0327|consen 291 SAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG-- 358 (397)
T ss_pred EEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC--
Confidence 56699999999999999999999999999999999999999999999 55554 4567999999999966
Q ss_pred CceEEEEEcCCCcHHHHHHh
Q 000129 878 SYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 878 ~~G~~iil~~~~e~~~~~~l 897 (2114)
.+|.++-+++..+...+.+.
T Consensus 359 rkg~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 359 RKGVAINFVTEEDVRDLKDI 378 (397)
T ss_pred CCceeeeeehHhhHHHHHhH
Confidence 88999999998776666553
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=333.55 Aligned_cols=429 Identities=19% Similarity=0.214 Sum_probs=303.4
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000129 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2114)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v 581 (2114)
..|-.+++.+..++|+||||||||+...+.++..... .+.+|+++.|.|--|..+++++.+.++ .++
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~ 122 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKL 122 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCc
Confidence 4455667778889999999999999988887776541 233899999999989999999887654 444
Q ss_pred EEEeC-CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcccc
Q 000129 582 RELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH 660 (2114)
Q Consensus 582 ~~l~G-d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~ 660 (2114)
+...| ...++......+.|-++|.+ +++|.......++.+++|||||+|. |.-...-++.-+.......+++
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCC
Confidence 44444 23344444568999999999 6777776667899999999999994 5555555666555555556668
Q ss_pred ccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHh--CCCeEEE
Q 000129 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLI 738 (2114)
Q Consensus 661 ~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLV 738 (2114)
.|+|.||||+ |.+.++.+++. .+++...+...||. ..|...... ... +...+...+..+. +.+.+||
T Consensus 196 LKiIimSATl-d~~rfs~~f~~---apvi~i~GR~fPVe--i~Y~~~~~~--d~~---l~~ai~~~v~~~~~~~~GdILv 264 (845)
T COG1643 196 LKLIIMSATL-DAERFSAYFGN---APVIEIEGRTYPVE--IRYLPEAEA--DYI---LLDAIVAAVDIHLREGSGSILV 264 (845)
T ss_pred ceEEEEeccc-CHHHHHHHcCC---CCEEEecCCccceE--EEecCCCCc--chh---HHHHHHHHHHHhccCCCCCEEE
Confidence 9999999998 67899999974 34556565555544 333221111 110 1222222233332 2689999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC
Q 000129 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (2114)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~ 818 (2114)
|.+...+...+++.|.+..... ..-|..+||.|+.+++..+++--..
T Consensus 265 FLpG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~ 311 (845)
T COG1643 265 FLPGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPG 311 (845)
T ss_pred ECCcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCC
Confidence 9999999999999998721110 1125677999999999999998888
Q ss_pred CCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 819 GHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|..+|++||++++.++.+|++++||+.. ..||+.+|.. +++|.++..||.|||||. .+|.||.+++.++
T Consensus 312 ~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~~ 388 (845)
T COG1643 312 GKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEED 388 (845)
T ss_pred CcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHHH
Confidence 9888999999999999999999999963 5788887743 679999999999999998 4899999999744
Q ss_pred HHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHH
Q 000129 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970 (2114)
Q Consensus 891 ~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~ 970 (2114)
|..+...+.| +.++..|.. .+-.+ ..+|+.. +...=+.++.+-..
T Consensus 389 ---~~~~~~~t~P------EIlrtdLs~------------~vL~l-------------~~~G~~~-d~~~f~fld~P~~~ 433 (845)
T COG1643 389 ---FLAFPEFTLP------EILRTDLSG------------LVLQL-------------KSLGIGQ-DIAPFPFLDPPPEA 433 (845)
T ss_pred ---HHhcccCCCh------hhhhcchHH------------HHHHH-------------HhcCCCC-CcccCccCCCCChH
Confidence 3344444333 222222211 11110 0112210 00111334444456
Q ss_pred HHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCcc
Q 000129 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038 (2114)
Q Consensus 971 li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~e 1038 (2114)
.+..|+..|...|+++.+ | .+|++|+.||.++++|+-+++...+-..+|. .+++.|.|+-++
T Consensus 434 ~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~Ls~ 495 (845)
T COG1643 434 AIQAALTLLQELGALDDS---G--KLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASMLSE 495 (845)
T ss_pred HHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhhcc
Confidence 788999999999999844 2 5999999999999999999999988776664 566666665544
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=303.82 Aligned_cols=454 Identities=16% Similarity=0.165 Sum_probs=313.5
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cC
Q 000129 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MY 577 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~ 577 (2114)
.+.+.+. .+..++.++|.+.||||||......++..-.. .+..+.+..|.|.-|..+++++..-.+ .+
T Consensus 360 ~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~edGY~----------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 360 CRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYEDGYA----------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhcccc----------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4555554 45667779999999999999865554433111 223788999999999999999887442 33
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
|-.|+.. ..+++-....+.|-+.|.+ +|+|.......+.++++||+||||. |.-.. .|+--+++.+-..
T Consensus 429 G~~VGYs---IRFEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHE----RslNt-DilfGllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYS---IRFEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHE----RSLNT-DILFGLLKKVLAR 497 (1042)
T ss_pred ccccceE---EEeeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhh----cccch-HHHHHHHHHHHHh
Confidence 3333322 2233333356889999999 6777776567788999999999995 22222 2333344444445
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
..+.++|..|||+ |++.++.|++. .+.|+..+...||.+. +...+ ......+...... .|......+.+|
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn---~p~f~IpGRTyPV~~~--~~k~p---~eDYVeaavkq~v-~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGN---CPQFTIPGRTYPVEIM--YTKTP---VEDYVEAAVKQAV-QIHLSGPPGDIL 567 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCC---CceeeecCCccceEEE--eccCc---hHHHHHHHHhhhe-EeeccCCCCCEE
Confidence 6799999999998 78999999983 3467777766666543 21111 1111111111100 011222357899
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
||...+..++-++..+........... .-...|...++.|+..-+..+++.-.
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~~---------------------------~~~L~vlpiYSQLp~dlQ~kiFq~a~ 620 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSAP---------------------------TTDLAVLPIYSQLPADLQAKIFQKAE 620 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcCC---------------------------CCceEEEeehhhCchhhhhhhcccCC
Confidence 999999999999888876543321110 01123667799999999999999999
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEec----ceeccCCCCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
.|..+++|||++++..+.+|++.+||+. -.+|++..|. ..++|.+...||.|||||.| +|.||.+++..
T Consensus 621 ~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 621 GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED 697 (1042)
T ss_pred CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh
Confidence 9999999999999999999999999984 4679998873 37899999999999999974 89999999863
Q ss_pred cHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhH
Q 000129 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (2114)
Q Consensus 890 e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~ 969 (2114)
. |...++..+.| +..+.++..-+.+-..-.++|+.+| . .+..+..
T Consensus 698 a--y~~eml~stvP------EIqRTNl~nvVLlLkslgV~dll~F---d------------------------FmD~Ppe 742 (1042)
T KOG0924|consen 698 A--YKNEMLPSTVP------EIQRTNLSNVVLLLKSLGVDDLLKF---D------------------------FMDPPPE 742 (1042)
T ss_pred H--HHhhcccCCCc------hhhhcchhhHHHHHHhcChhhhhCC---C------------------------cCCCCHH
Confidence 3 33445555554 2222233222222222223343322 1 1223344
Q ss_pred HHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHH
Q 000129 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (2114)
Q Consensus 970 ~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~ 1049 (2114)
+.+.+++..|...|+|.. ...+|++|+.|+.|+++|...++++-+..-+|+ .|+|.|+|+-+- ..|+.|+.|+
T Consensus 743 d~~~~sly~Lw~LGAl~~-----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpker 815 (1042)
T KOG0924|consen 743 DNLLNSLYQLWTLGALDN-----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPKER 815 (1042)
T ss_pred HHHHHHHHHHHHhhcccc-----CCccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeeccccc
Confidence 678899999999999974 248999999999999999999999988777776 799999998765 5788998888
Q ss_pred HHHHHHh
Q 000129 1050 MELAKLL 1056 (2114)
Q Consensus 1050 ~~l~~l~ 1056 (2114)
.+-..+.
T Consensus 816 ~eead~a 822 (1042)
T KOG0924|consen 816 EEEADAA 822 (1042)
T ss_pred hhhhhhH
Confidence 7766554
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=321.15 Aligned_cols=302 Identities=18% Similarity=0.213 Sum_probs=196.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh-
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~- 592 (2114)
++++||||||||.+|++++++.+.... ..+++|++|+++|+.|+++++...++. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 799999999999999999998875432 238999999999999999999997653 4555555432100
Q ss_pred --------------------hhhccceEEEcCHhHH-HHHHhccCC-Ccccc--cccEEEEecccccccCCchhHHHHHH
Q 000129 593 --------------------QQIEETQIIVTTPEKW-DIITRKSGD-RTYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (2114)
Q Consensus 593 --------------------~~~~~~~IiV~TPek~-d~l~r~~~~-~~~l~--~v~liIiDEaH~l~d~rg~~le~iv~ 648 (2114)
.....++|+|+||+++ ..+.+.... ...+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0112468999999996 333331111 01111 23789999999987642222333333
Q ss_pred HHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccccc---ceeEEEeeccCchhHHHHHhhHHHHH
Q 000129 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDLCYE 725 (2114)
Q Consensus 649 rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (2114)
.+ . ..+.|+++||||+| +.+..|+....... ........+ ...+.+.............+..
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 214 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYVE---FNEPLDLKEERRFERHRFIKIESDKVGEISSLER---- 214 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCcc---cccCCCCccccccccccceeeccccccCHHHHHH----
Confidence 32 2 34789999999998 55677765332110 000000000 1111111111110111111111
Q ss_pred HHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCC
Q 000129 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2114)
Q Consensus 726 ~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~ 805 (2114)
.+.....++++||||+|++.|+.++..|++.+.. ..+..+||+|+
T Consensus 215 l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~~ 259 (358)
T TIGR01587 215 LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRFT 259 (358)
T ss_pred HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCCC
Confidence 1222234689999999999999999999865321 24778899999
Q ss_pred HHHHHHH----HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCC--c
Q 000129 806 RGDRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS--Y 879 (2114)
Q Consensus 806 ~~~R~~v----~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~--~ 879 (2114)
+.+|..+ ++.|++|..+|||||+++++|||+| +.+||+ +.. +..+|+||+||+||.|... .
T Consensus 260 ~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 260 EKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE----cCC--------CHHHHHHHhccccCCCCCCCCC
Confidence 9999764 7899999999999999999999997 455565 321 4668999999999987542 3
Q ss_pred eEEEEEcCCCc
Q 000129 880 GEGIIITGHSE 890 (2114)
Q Consensus 880 G~~iil~~~~e 890 (2114)
|..+++...++
T Consensus 327 ~~~~v~~~~~~ 337 (358)
T TIGR01587 327 FEVYIITIAPE 337 (358)
T ss_pred CeEEEEeecCC
Confidence 58888876654
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=314.91 Aligned_cols=299 Identities=19% Similarity=0.253 Sum_probs=205.2
Q ss_pred HHHHHHHHHHcCCC-cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC---CCc
Q 000129 1345 IQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG---LGM 1420 (2114)
Q Consensus 1345 iQ~q~~~~il~~~~-nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~---~g~ 1420 (2114)
+|+++|+++++++. +++++||||||||.||++|++. ... +++|++|+++|+.|++++|++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~~~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------GEN--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------cCC--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999875 6899999999999999999884 133 78999999999999999999777432 367
Q ss_pred EEEEEcCCcccchhh-----------------------ccCCcEEEEChhhHHHHHhhhcccc------cccceeEEEec
Q 000129 1421 RVVELTGETAMDLKL-----------------------LEKGQIIISTPEKWDALSRRWKQRK------YVQQVSLFIID 1471 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~-----------------------l~~~~IIV~TPe~l~~l~r~~~~~~------~l~~v~liIiD 1471 (2114)
.+..++|+...+.+. ...++|+++||+.|..++|+|.... .++++++||+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 788888874433111 1246899999999999988764322 36899999999
Q ss_pred ccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHh------cCCC----CceeecCC--------
Q 000129 1472 ELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI------GATS----HGLFNFPP-------- 1533 (2114)
Q Consensus 1472 EaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl------~~~~----~~~~~f~~-------- 1533 (2114)
|+|.+..+....+...+..+..+... ....++|++|||++.. +.+++ |... ..-+.+..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~--~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPA--LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHH--HHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 99999876655555555555544332 3357999999999753 33332 2111 00011110
Q ss_pred ---CCCcc--CcEEEEecccccchHHHHHhcCHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1534 ---GVRPV--PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1534 ---~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
.+||+ +++..+.. ...+.... .......+.+.+ .+++++||||+|++.|+.++..|...
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~---l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~--------- 295 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEE---LSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ--------- 295 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHH---HHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh---------
Confidence 22332 23333222 11111111 111222232222 25678999999999999999777321
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeee
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
.....+..+||.+++.+|..+ ++.+|||||+++++|||+|.+.+|+
T Consensus 296 ------------------------~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~---- 341 (357)
T TIGR03158 296 ------------------------GLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIF---- 341 (357)
T ss_pred ------------------------CCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEE----
Confidence 012347789999999998654 4789999999999999999885443
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.|.+..+|+||+||+|
T Consensus 342 ---------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 ---------SARDAAAFWQRLGRLG 357 (357)
T ss_pred ---------CCCCHHHHhhhcccCC
Confidence 2678999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=318.73 Aligned_cols=324 Identities=19% Similarity=0.212 Sum_probs=209.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-------
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD------- 1432 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~------- 1432 (2114)
++|+||||||||++|++++++.+.. ...+ +++|++|+++|+.|++++++..|+. +++.++|.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 7999999999999999999988765 3344 9999999999999999999987764 344444432210
Q ss_pred --------------hhhccCCcEEEEChhhHHHHHhh-hccc-cccc--ceeEEEecccccccCCCCchHHHHHHHHHHH
Q 000129 1433 --------------LKLLEKGQIIISTPEKWDALSRR-WKQR-KYVQ--QVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 --------------~~~l~~~~IIV~TPe~l~~l~r~-~~~~-~~l~--~v~liIiDEaH~l~~~~g~~le~i~srl~~i 1494 (2114)
...+..++|+|+||+++...+.+ .... ..+. ..+++|+||+|.+.+... +.+...++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~---~~l~~~l~~l 151 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTL---ALILAVLEVL 151 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHH---HHHHHHHHHH
Confidence 00123458999999998765443 1111 1111 237999999999875432 2233333333
Q ss_pred HhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccC-cEEEEecccccchHHHHHhcCHHHHHHHHHHhcC
Q 000129 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 1573 (2114)
. ..+.|++++|||++ +.+.+|+...............+.. ...+........ ..........+......
T Consensus 152 ~---~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~~~ 221 (358)
T TIGR01587 152 K---DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESD-----KVGEISSLERLLEFIKK 221 (358)
T ss_pred H---HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCccccccccccceeeccc-----cccCHHHHHHHHHHhhC
Confidence 2 24689999999997 4456665432111000000000000 000000000000 00111222333344356
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH---
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV--- 1650 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~--- 1650 (2114)
++++||||+|+++|+.++..|.... ....+..+||+|++.+|..
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~ 268 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA---------------------------------PEEEIMLLHSRFTEKDRAKKEA 268 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc---------------------------------CCCeEEEEECCCCHHHHHHHHH
Confidence 7899999999999999997774321 1125899999999999976
Q ss_pred -HHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC--CceEEEEEeec
Q 000129 1651 -VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCHA 1727 (2114)
Q Consensus 1651 -v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~--~~G~~iil~~~ 1727 (2114)
+++.|++|..+|||||+++++|+|+|...+|. + +.+..+|+||+||+||.|.. ..|.++++...
T Consensus 269 ~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-----------~--~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 269 ELLEEMKKNEKFVIVATQVIEASLDISADVMIT-----------E--LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHhcCCCCeEEEECcchhceeccCCCEEEE-----------c--CCCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 48899999999999999999999998554443 2 45688999999999998633 33588888876
Q ss_pred CcHHHHHHHHHhccCCCCccccCCCccchHHHHHHHHHHHHHHHHH
Q 000129 1728 PRKEYYKKFLRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1773 (2114)
Q Consensus 1728 ~~~~~~~~~lRl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~ 1773 (2114)
++... .-|-.++++++++.|++
T Consensus 336 ~~~~~------------------------~~~~~~~~~~t~~~~~~ 357 (358)
T TIGR01587 336 PEGKL------------------------FPYPYELVERTIQKLEE 357 (358)
T ss_pred CCCCe------------------------ecCCHHHHHHHHHHHhc
Confidence 54221 12334788888888875
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=294.41 Aligned_cols=345 Identities=20% Similarity=0.225 Sum_probs=229.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1337 ~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
++.-+++.+|..+...++.. |+||+.|||-|||++|.+.+...+.. .++ ++|+++||+-|+.|.+..+++.++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~--~~~--kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRW--FGG--KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHh--cCC--eEEEecCCchHHHHHHHHHHHHhC-
Confidence 34567889999999888753 89999999999999999999988887 233 899999999999999999985544
Q ss_pred CCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i 1494 (2114)
...-.++.++|..+.+ ...+.+++|+|+||+.+.+=+.. ++..+.++.++|+||||+--+. ..|-.+....-
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvGn--yAYv~Va~~y~-- 157 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVGN--YAYVFVAKEYL-- 157 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccCc--chHHHHHHHHH--
Confidence 3355789999999887 44678889999999998765555 5678999999999999986433 33433433222
Q ss_pred HhhcCCCceEEEEcccCCChh----HHHHHhcCCCCce-eecCCCCCccCcEEEE--ecccccch----HHHHHhcCHHH
Q 000129 1495 ASQVENKIRIVALSTSLANAK----DLGEWIGATSHGL-FNFPPGVRPVPLEIHI--QGVDITNF----EARMQAMTKPT 1563 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~----dla~wl~~~~~~~-~~f~~~~rpv~l~~~~--~~~~~~~~----~~~~~~~~~~~ 1563 (2114)
....+++++|||||+++.. ++.+-||.....+ ..-++.++|.--.+.+ ...+.+.- ...+..+.++.
T Consensus 158 --~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 158 --RSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred --HhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 1256889999999998742 4555555543111 1112333332111111 11110000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 000129 1564 -------------------------------------------------------------------------------- 1563 (2114)
Q Consensus 1564 -------------------------------------------------------------------------------- 1563 (2114)
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence
Q ss_pred --------------------------------------HHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1564 --------------------------------------FTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1564 --------------------------------------~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...+.+.+ ..+.++|||++-|..|+.++..|........
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~- 394 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR- 394 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-
Confidence 00000011 1123466666666666665555533211100
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEE
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~ 1683 (2114)
..+++.+-.-+..||++.+++.+++.|++|..+|||||++++.|+|+|.+.+||
T Consensus 395 -------------------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi- 448 (542)
T COG1111 395 -------------------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI- 448 (542)
T ss_pred -------------------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE-
Confidence 001111122234789999999999999999999999999999999999999999
Q ss_pred eeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC--cHHHHHH
Q 000129 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP--RKEYYKK 1735 (2114)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~--~~~~~~~ 1735 (2114)
.|+.--|..-++||.||+|| +..|.++++.... +..||..
T Consensus 449 ---------fYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 449 ---------FYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred ---------EecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHH
Confidence 33333467889999999999 6899999999887 4445543
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=291.97 Aligned_cols=342 Identities=23% Similarity=0.330 Sum_probs=233.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+.-+++.+|...+..++.+ |.|++.|||-|||.+|++.|...+.... + |+|+++|||-|+.|.++.+.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred ccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHH
Confidence 4557889999999988876 8999999999999999999998887652 3 89999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
+.++-..-.+..+||..+.+.+ .+...+|+|+||... |++.. +..+.++.++||||||+-..+.. +-.+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G----rid~~dv~~lifDEAHRAvGnyA--Yv~Va 153 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG----RIDLDDVSLLIFDEAHRAVGNYA--YVFVA 153 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC----ccChHHceEEEechhhhccCcch--HHHHH
Confidence 9876545578999999887754 367899999999986 33322 35678899999999998653322 22222
Q ss_pred HHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEee---cCCccccc--ceeEEEe---------------
Q 000129 648 ARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYF---DNSYRPVP--LSQQYIG--------------- 706 (2114)
Q Consensus 648 ~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f---~~~~rpv~--l~~~~~~--------------- 706 (2114)
...+ ....+++++|||||..+ .+.+.+-...-.-..+.+- +.+.+|.- ...+.+.
T Consensus 154 ~~y~----~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~ 229 (542)
T COG1111 154 KEYL----RSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLR 229 (542)
T ss_pred HHHH----HhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHH
Confidence 2222 23568899999999553 2233332221100111110 01111100 0000000
Q ss_pred ------------------ec---cC--------------c-hhHHHHHh-------------------------------
Q 000129 707 ------------------IQ---VK--------------K-PLQRFQLM------------------------------- 719 (2114)
Q Consensus 707 ------------------~~---~~--------------~-~~~~~~~~------------------------------- 719 (2114)
.. .+ . ....+..|
T Consensus 230 ~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l 309 (542)
T COG1111 230 DALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKL 309 (542)
T ss_pred HHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 00 00 0 00000000
Q ss_pred ----------------h------------------------HHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHH
Q 000129 720 ----------------N------------------------DLCYEKVVAVA---GKHQVLIFVHSRKETAKTARAIRDT 756 (2114)
Q Consensus 720 ----------------~------------------------~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2114)
. +.+.+.+.+.. ++.++|||++-|..++.++..|...
T Consensus 310 ~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~ 389 (542)
T COG1111 310 EEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI 389 (542)
T ss_pred HHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc
Confidence 0 00001112222 2458999999999999999999887
Q ss_pred hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
+.... ..|+. .+-.-+..||++.++..+++.|++|..+||||||+.+.|+|+
T Consensus 390 ~~~~~--~rFiG--------------------------Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI 441 (542)
T COG1111 390 GIKAR--VRFIG--------------------------QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI 441 (542)
T ss_pred CCcce--eEEee--------------------------ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCC
Confidence 65543 12321 111223589999999999999999999999999999999999
Q ss_pred CceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC--cHHHHHH
Q 000129 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLS 896 (2114)
Q Consensus 837 P~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--e~~~~~~ 896 (2114)
|++++||- |+|-- |..-++||.||+||. +.|.++++.+.+ +..||.+
T Consensus 442 p~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 442 PEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred CcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHH
Confidence 99999997 88765 888999999999994 789999998876 4445543
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=320.63 Aligned_cols=410 Identities=16% Similarity=0.160 Sum_probs=297.4
Q ss_pred HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000129 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2114)
Q Consensus 1349 ~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~ 1428 (2114)
.|-.+++.+..++|+||||||||+...+.++..... ..+ +++++.|+|--|..+++++.+.++...|-.|+...-
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR- 131 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR- 131 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE-
Confidence 344455667889999999999999988888876542 244 899999999999999999999988776766665432
Q ss_pred cccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEc
Q 000129 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
.+...-.++.|-++|.|.|...+. ....++.+++||+||+| +|.-....++.-++.+....+.+.++|.||
T Consensus 132 --fe~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 132 --FESKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred --eeccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 122223467899999999665554 47789999999999999 344555668888888877777789999999
Q ss_pred ccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeCChHHH
Q 000129 1509 TSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYV 1587 (2114)
Q Consensus 1509 ATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~sr~~a 1587 (2114)
||+ |+++|+++|+..+ ++. ...|..|+++++......++. . .......+..++ ...+.+|||.|..++.
T Consensus 203 ATl-d~~rfs~~f~~ap--vi~--i~GR~fPVei~Y~~~~~~d~~-l----~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 203 ATL-DAERFSAYFGNAP--VIE--IEGRTYPVEIRYLPEAEADYI-L----LDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred ccc-CHHHHHHHcCCCC--EEE--ecCCccceEEEecCCCCcchh-H----HHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 999 8999999999643 343 345777777777433332221 1 111122222222 3467899999999999
Q ss_pred HHHHHHHHH-hhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 000129 1588 RLTAVDLMT-YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2114)
Q Consensus 1588 ~~la~~L~~-~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT 1666 (2114)
+.++..|.. ... -..-|..+||.|+.+++..+++.-..|+.+|++||
T Consensus 273 ~~~~~~L~~~~l~--------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlAT 320 (845)
T COG1643 273 ERTAEWLEKAELG--------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLAT 320 (845)
T ss_pred HHHHHHHHhcccc--------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEc
Confidence 999987754 100 12348999999999999999999999999999999
Q ss_pred CccccccCCCCcEEEEE-e---eeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHH
Q 000129 1667 SSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1667 ~~la~Gvdip~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lR 1738 (2114)
++++.+|++|++++||- | ...|+.+.+. ..++|.++..||.||||| -.+|+||.++++.+.. .+.
T Consensus 321 NIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~---~~~- 393 (845)
T COG1643 321 NIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL---AFP- 393 (845)
T ss_pred cccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH---hcc-
Confidence 99999999999999993 2 3577777554 357899999999999999 4799999999874332 222
Q ss_pred hccCCCC--------------cccc-CCCccc-hHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHh
Q 000129 1739 LTQNPNY--------------YNLQ-GVSHRH-LSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYT 1802 (2114)
Q Consensus 1739 l~~nP~~--------------y~l~-~~s~~~-l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~ 1802 (2114)
....|.. +|+. +..... ++..-...+..++..|...|++..++ ..|++|+.||.++++|+
T Consensus 394 ~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g----~LT~lG~~ms~lpldpr 469 (845)
T COG1643 394 EFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSG----KLTPLGKQMSLLPLDPR 469 (845)
T ss_pred cCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCC----CCCHHHHHHHhCCCChH
Confidence 0111111 1221 111111 12223567889999999999995443 38999999999999999
Q ss_pred HHHHHHhhcCCCCChhhHHHHHhc
Q 000129 1803 TIERFSSSLTPKTRMKGLLEVLAS 1826 (2114)
Q Consensus 1803 T~~~f~~sl~~~~~~~~iL~ils~ 1826 (2114)
.++++..+-... ...+++.|.|.
T Consensus 470 LA~mLl~a~~~g-~~~e~~~Ias~ 492 (845)
T COG1643 470 LARMLLTAPEGG-CLGEAATIASM 492 (845)
T ss_pred HHHHHHhccccC-cHHHHHHHHHh
Confidence 999999865533 33445444443
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=285.96 Aligned_cols=441 Identities=16% Similarity=0.159 Sum_probs=304.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
..+.+.+..+ ..++.|+|.+.||||||+.....++.. ....+| .+-|..|+|..|..+++++...++..+|..|+
T Consensus 359 ~~R~~ll~~i-r~n~vvvivgETGSGKTTQl~QyL~ed--GY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 359 ACRDQLLSVI-RENQVVVIVGETGSGKTTQLAQYLYED--GYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHH-hhCcEEEEEecCCCCchhhhHHHHHhc--ccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 3455555544 457779999999999998765544432 212344 78899999999999999999988777777776
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
....-.+. .-..+.|-++|.+.| +|.......+.++++||+|||| ++......++..++..... ..+++
T Consensus 434 YsIRFEdv---T~~~T~IkymTDGiL---LrEsL~d~~L~kYSviImDEAH----ERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 434 YSIRFEDV---TSEDTKIKYMTDGIL---LRESLKDRDLDKYSVIIMDEAH----ERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred eEEEeeec---CCCceeEEEeccchH---HHHHhhhhhhhheeEEEechhh----hcccchHHHHHHHHHHHHh-hccce
Confidence 54321111 113557999999985 4444446678999999999999 3444455566666665544 56999
Q ss_pred EEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHh-cCCCCEEEEeC
Q 000129 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVP 1582 (2114)
Q Consensus 1504 iV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~LVFv~ 1582 (2114)
+|.+|||+ |++.|+.|+|..+ .|+. ..|..|+++.+...+..+|.... .+ +.+.-++ ...+.+|||.+
T Consensus 503 liVtSATm-~a~kf~nfFgn~p--~f~I--pGRTyPV~~~~~k~p~eDYVeaa---vk---q~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 503 LIVTSATM-DAQKFSNFFGNCP--QFTI--PGRTYPVEIMYTKTPVEDYVEAA---VK---QAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred EEEeeccc-cHHHHHHHhCCCc--eeee--cCCccceEEEeccCchHHHHHHH---Hh---hheEeeccCCCCCEEEecC
Confidence 99999999 9999999999554 3444 45677777776655555443321 11 1111122 24478999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKV 1662 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~V 1662 (2114)
.+..++.++..+...+..-... ......|..+++.|+..-+..+++.-..|..++
T Consensus 572 GqediE~t~~~i~~~l~ql~~~-------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~ 626 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSA-------------------------PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKC 626 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcC-------------------------CCCceEEEeehhhCchhhhhhhcccCCCCceeE
Confidence 9988877776664432211000 001234889999999999999999999999999
Q ss_pred EEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1663 CVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1663 LVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
+|||++++.++.+|++.+|| ...+.|+.+.+. -+|+|.+..-||.||||| ..+|.||.+++... |..
T Consensus 627 IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGR---t~pG~cYRlYTe~a--y~~ 701 (1042)
T KOG0924|consen 627 IVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGR---TGPGTCYRLYTEDA--YKN 701 (1042)
T ss_pred EEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCC---CCCcceeeehhhhH--HHh
Confidence 99999999999999999999 334678877654 358999999999999999 57999999997632 222
Q ss_pred HHH-----H-hccCCCCc--cccCCCccchHH------HHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccC
Q 000129 1735 KFL-----R-LTQNPNYY--NLQGVSHRHLSD------HLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYIS 1800 (2114)
Q Consensus 1735 ~~l-----R-l~~nP~~y--~l~~~s~~~l~~------~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~ 1800 (2114)
.++ . ...|+.-. -|+.+...+++. ...+.+.+++-.|...|+|.- .-..|++|+.|+.|+++
T Consensus 702 eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~----~g~LT~lG~~MvefpLD 777 (1042)
T KOG0924|consen 702 EMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDN----TGQLTPLGRKMVEFPLD 777 (1042)
T ss_pred hcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhcccc----CCccchhhHHhhhCCCC
Confidence 222 0 11122211 111122222222 267888999999999999943 44689999999999999
Q ss_pred HhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHH
Q 000129 1801 YTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLI 1847 (2114)
Q Consensus 1801 ~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~ 1847 (2114)
|...++++.+..-.+ ..+||.|+|.-+- ..+-.|+.|...-..++
T Consensus 778 P~lsKmll~a~~~Gc-~dEilsIvSmLSv-p~VF~rpker~eead~a 822 (1042)
T KOG0924|consen 778 PPLSKMLLMAARMGC-SDEILSIVSMLSV-PAVFYRPKEREEEADAA 822 (1042)
T ss_pred chHHHHHHHHhccCc-HHHHHHHHHHhcc-cceeeccccchhhhhhH
Confidence 999999987655444 3666666654332 34556666655544443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=313.55 Aligned_cols=359 Identities=16% Similarity=0.178 Sum_probs=222.8
Q ss_pred cCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhc--CC--CCCCCHHHHHHHHHHHcCCCcEEEEcc
Q 000129 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAF--KG--MTQLNRVQSRVYKSALSSADNILLCAP 519 (2114)
Q Consensus 444 ~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f--~g--~~~l~~iQ~~~i~~~l~~~~nvlv~AP 519 (2114)
.+|-|-........++..+.+........++. ++-.++..|+.... .+ ...|+++|.++++.++.++ +.+++||
T Consensus 60 ~~prG~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~-~~il~ap 137 (501)
T PHA02558 60 LLPYGLVGQLKKFAKNRGYSIWVDPRIEENED-ISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNN-RRLLNLP 137 (501)
T ss_pred CcccchHHHHHHHHHhcCCeEecCcccccCCC-CCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcC-ceEEEeC
Confidence 68888766655555554443321111111111 12223344555433 12 3489999999999988764 4899999
Q ss_pred CCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccce
Q 000129 520 TGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599 (2114)
Q Consensus 520 TGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~ 599 (2114)
||+|||.++...+...+... ..++||++||++|+.|+.++|.+++......+..+.|+.... ...+
T Consensus 138 TGsGKT~i~~~l~~~~~~~~----------~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~----~~~~ 203 (501)
T PHA02558 138 TSAGKSLIQYLLSRYYLENY----------EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD----TDAP 203 (501)
T ss_pred CCCCHHHHHHHHHHHHHhcC----------CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC----CCCC
Confidence 99999998765332222221 238999999999999999999986543334454555544322 3579
Q ss_pred EEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHH----
Q 000129 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED---- 675 (2114)
Q Consensus 600 IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~d---- 675 (2114)
|+|+||+++- +.. ..+++++++||+||||++.+ ..++.++..+ ....+++|||||+++...
T Consensus 204 I~VaT~qsl~---~~~--~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~-------~~~~~~lGLTATp~~~~~~~~~ 268 (501)
T PHA02558 204 IVVSTWQSAV---KQP--KEWFDQFGMVIVDECHLFTG---KSLTSIITKL-------DNCKFKFGLTGSLRDGKANILQ 268 (501)
T ss_pred EEEeeHHHHh---hch--hhhccccCEEEEEchhcccc---hhHHHHHHhh-------hccceEEEEeccCCCccccHHH
Confidence 9999999752 222 13567899999999999863 3455554432 234578999999764221
Q ss_pred HHHHHhccccCceEeecC-----CcccccceeEEE--eeccC--------chhHHHH------HhhHHHHHHHHHHh-CC
Q 000129 676 VALFLRVNLEKGLFYFDN-----SYRPVPLSQQYI--GIQVK--------KPLQRFQ------LMNDLCYEKVVAVA-GK 733 (2114)
Q Consensus 676 va~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~--~~~~~--------~~~~~~~------~~~~~~~~~i~~~~-~~ 733 (2114)
+..+++.. .+.... .-..+++....+ ..+.. .....+. .-+..+...+.... .+
T Consensus 269 ~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~ 344 (501)
T PHA02558 269 YVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKG 344 (501)
T ss_pred HHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 11122100 000000 000001111000 00000 0000000 01122222222222 35
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHH
Q 000129 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (2114)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~ 813 (2114)
++++|||++++.++.++..|...+. .+.++||+|+.++|..++
T Consensus 345 ~~~lV~~~~~~h~~~L~~~L~~~g~-------------------------------------~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 345 ENTFVMFKYVEHGKPLYEMLKKVYD-------------------------------------KVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHcCC-------------------------------------CEEEEeCCCCHHHHHHHH
Confidence 6889999999999999988876432 256779999999999999
Q ss_pred HHHhCCCceEEEec-hHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 814 DLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 814 ~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
+.|++|...||||| +++++|+|+|++++||. +.|.+ |...|+||+||+||++.+ +..++++
T Consensus 388 ~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~QriGR~~R~~~~-K~~~~i~ 449 (501)
T PHA02558 388 KIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQSIGRVLRKHGS-KSIATVW 449 (501)
T ss_pred HHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhhhhhccccCCCC-CceEEEE
Confidence 99999999999998 89999999999999997 66665 677899999999998633 3445544
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=315.62 Aligned_cols=389 Identities=18% Similarity=0.186 Sum_probs=250.3
Q ss_pred CCCCHHHHHHHHHHHcC--CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~--~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
..+++.|.++++.+.++ ..++++.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~f--- 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARF--- 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHh---
Confidence 36999999999999874 5679999999999999998888777654 44 89999999999999999999766
Q ss_pred CCcEEEEEcCCcccchh-----hc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC--CCCchHHH-H
Q 000129 1418 LGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEV-I 1487 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~--~~g~~le~-i 1487 (2114)
|.++..++|+.+...+ .+ ...+|+|+|++.+. ..+.++++|||||+|..+. ..++.|.. -
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 4578899998765421 12 24599999997632 3478899999999997653 23444321 1
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCC--CccCcEEEEecccccchHHHHHhcCHHHHH
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1565 (2114)
+..++. ...+.++|++|||++ .+.+..-. ......+...... ++.| .+.+..............+...++.
T Consensus 285 va~~ra----~~~~~~~il~SATps-~~s~~~~~-~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 285 LAVVRA----KLENIPVVLGSATPS-LESLANAQ-QGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred HHHHHh----hccCCCEEEEcCCCC-HHHHHHHh-ccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHH
Confidence 111221 145789999999964 33332211 1112222222221 1122 2333222110000001134567788
Q ss_pred HHHHHhcCCCCEEEEeCChHHH-----HHHHHHH-------------------HHhhccCCcccccccCCCcccchh---
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYV-----RLTAVDL-------------------MTYSSMDGDQKSAFLLWPAEEVEP--- 1618 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a-----~~la~~L-------------------~~~~~~~~~~~~~~l~~~~~~l~~--- 1618 (2114)
.+.+.+..++++|||+|+|..+ +.+...+ |++|.........|..|....+..
T Consensus 358 ~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~ 437 (679)
T PRK05580 358 AIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGP 437 (679)
T ss_pred HHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeec
Confidence 8888888899999999997643 2222111 223332222112244444433332
Q ss_pred hHhhhhHHHHHHHhccceEeecCCCC--HHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeEecCC-cCc
Q 000129 1619 FIDNIQEEMLKATLRHGVGYLHEGLN--KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYYDGQ-ENA 1694 (2114)
Q Consensus 1619 ~~~~i~d~~L~~~l~~gV~~~H~~ls--~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~yd~~-~~~ 1694 (2114)
-.+++.+..-..+.+..|..+|+++. ..+++.+++.|++|+++|||+|+++++|+|+|++.+|+ .+....-.. .-+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 24444444444444678999999986 46789999999999999999999999999999998775 211100000 000
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHH------------H---HhccCCCCccccCCCccc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF------------L---RLTQNPNYYNLQGVSHRH 1755 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~------------l---Rl~~nP~~y~l~~~s~~~ 1755 (2114)
........|+|++|||||. +..|.+++.+..++...++.+ + +....|+|..+..+...+
T Consensus 518 a~Er~~~~l~q~~GRagR~--~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~ 591 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRA--EKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASA 591 (679)
T ss_pred hHHHHHHHHHHHHhhccCC--CCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEec
Confidence 0111257799999999997 789999999987764333222 2 677899999776654433
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=306.11 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|+++|.++++.++.++ +.+++||||||||+++... .+.+.. ...+ ++||++||++|+.|+.++++ .|.....
T Consensus 113 ~~~r~~Q~~av~~~l~~~-~~il~apTGsGKT~i~~~l-~~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~-~~~~~~~ 186 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNN-RRLLNLPTSAGKSLIQYLL-SRYYLE-NYEG--KVLIIVPTTSLVTQMIDDFV-DYRLFPR 186 (501)
T ss_pred CCCCHHHHHHHHHHHhcC-ceEEEeCCCCCHHHHHHHH-HHHHHh-cCCC--eEEEEECcHHHHHHHHHHHH-Hhccccc
Confidence 479999999999998754 5899999999999987543 333233 2233 89999999999999999998 4554323
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
..+..+.|+.... ..++|+|+||+++.... ...++++++||+||||++.+. .++.++.. ++
T Consensus 187 ~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~~---~~~~il~~-------~~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTGK---SLTSIITK-------LD 247 (501)
T ss_pred cceeEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccch---hHHHHHHh-------hh
Confidence 3444444444322 35799999999875432 225788999999999998642 33333322 23
Q ss_pred CCceEEEEcccCCChhH----HHHHhcCCCCcee--ecCCCCCccCcEEEE--ecccc--------cchHHHHHh-cC--
Q 000129 1500 NKIRIVALSTSLANAKD----LGEWIGATSHGLF--NFPPGVRPVPLEIHI--QGVDI--------TNFEARMQA-MT-- 1560 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~d----la~wl~~~~~~~~--~f~~~~rpv~l~~~~--~~~~~--------~~~~~~~~~-~~-- 1560 (2114)
+..+++|||||+.+... +..++|.....+- .........++.+.. ..++. ..+...... ..
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHT 327 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccH
Confidence 45679999999975321 2334442211000 000000011111111 01110 011111100 00
Q ss_pred ---HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1561 ---KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1561 ---~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
......+......+++++|||.+.++|+.++..|.. .+..+.
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~-----------------------------------~g~~v~ 372 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK-----------------------------------VYDKVY 372 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH-----------------------------------cCCCEE
Confidence 011111222224567899999999999888866632 233589
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEec-CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
.+||+|+.++|..+++.|++|...||||| +++++|+|+|.+.+|| ....+.+...|+||+||++|.+ +
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI----------l~~p~~s~~~~~QriGR~~R~~-~ 441 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI----------FAHPSKSKIIVLQSIGRVLRKH-G 441 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE----------EecCCcchhhhhhhhhccccCC-C
Confidence 99999999999999999999999999998 8999999999999999 4555667889999999999985 3
Q ss_pred CceEEEEE
Q 000129 1717 NSGKCVIL 1724 (2114)
Q Consensus 1717 ~~G~~iil 1724 (2114)
....|.++
T Consensus 442 ~K~~~~i~ 449 (501)
T PHA02558 442 SKSIATVW 449 (501)
T ss_pred CCceEEEE
Confidence 34445444
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=275.90 Aligned_cols=330 Identities=18% Similarity=0.304 Sum_probs=232.1
Q ss_pred CCCCCC-CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 491 KGMTQL-NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 491 ~g~~~l-~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.|+.+| ++.|.+++..+..++.+|.||+|||+||++||.||.|-.- + ..|++.|+.||+.++...
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~-------------g-ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG-------------G-ITIVISPLIALIKDQIDH 80 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC-------------C-eEEEehHHHHHHHHHHHH
Confidence 356554 6899999999999999999999999999999999987541 1 689999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChh---------hhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEeccccccc-
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQ---------QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~---------~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (2114)
+.++ .+.+..+.+..+...+ ......+++-|||.. +.+.........-..++++|+||||++..
T Consensus 81 L~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQW 156 (641)
T KOG0352|consen 81 LKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQW 156 (641)
T ss_pred HHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhh
Confidence 8764 4555555554433222 134678999999974 11111111112234578999999999954
Q ss_pred --CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeec-CCcccccceeEEEeeccCch
Q 000129 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 638 --~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~~~ 712 (2114)
+++|.+-.+ ..+++..+++..|+|+||... -+|+..-|+.. .++-.|. +.||. .| |+.+.-++.
T Consensus 157 GHDFRPDYL~L-----G~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~-NL---FYD~~~K~~ 225 (641)
T KOG0352|consen 157 GHDFRPDYLTL-----GSLRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRD-NL---FYDNHMKSF 225 (641)
T ss_pred ccccCcchhhh-----hhHHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhh-hh---hHHHHHHHH
Confidence 456655433 223455678999999999643 45666666543 3443333 23332 11 111111110
Q ss_pred -hHHHHHhhHHHHHHHH------HHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc
Q 000129 713 -LQRFQLMNDLCYEKVV------AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2114)
Q Consensus 713 -~~~~~~~~~~~~~~i~------~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 783 (2114)
..-+..+.+.+...+- +..+ .+-.||||.||++|+.+|-.|...|+...
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~---------------------- 283 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM---------------------- 283 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH----------------------
Confidence 0112222222222111 1111 35689999999999999998877664432
Q ss_pred cCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHH
Q 000129 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2114)
Q Consensus 784 ~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2114)
.+|+||-..+|.+|.+.+.+|++.||+||..+++|||-|+|++||+ ||++. +.+-
T Consensus 284 ---------------AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q------n~Ag 338 (641)
T KOG0352|consen 284 ---------------AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ------NLAG 338 (641)
T ss_pred ---------------HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh------hhHH
Confidence 3499999999999999999999999999999999999999999999 99887 8899
Q ss_pred HHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
|.|..|||||.| ..+.|-++++.++...+.-++
T Consensus 339 YYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 339 YYQESGRAGRDG--KRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred HHHhccccccCC--CccceeeeecccchHHHHHHH
Confidence 999999999998 778999999998877665444
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=311.16 Aligned_cols=370 Identities=22% Similarity=0.211 Sum_probs=244.7
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999874 56799999999999999998888777543 3799999999999999999998
Q ss_pred hhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc--CCchhH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~l 643 (2114)
.+ |.++..++|+.+...+. ....+|+|+|+..+ ...++++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---------~~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---------FLPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---------cccccCCCEEEEECCCccccccCcCCCC
Confidence 65 67899999987654331 24679999999752 13467899999999997643 234433
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccc-eeEEEeeccCchhHHHHHhhHH
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMNDL 722 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~~ 722 (2114)
.. |-+...+....+.++|++||| |..+......... -........+...++ ...++.............+...
T Consensus 281 ~~---r~va~~ra~~~~~~~il~SAT-ps~~s~~~~~~g~--~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 281 HA---RDLAVVRAKLENIPVVLGSAT-PSLESLANAQQGR--YRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred cH---HHHHHHHhhccCCCEEEEcCC-CCHHHHHHHhccc--eeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHH
Confidence 21 111111234568899999999 5555444432211 112222222211111 1223322110000000124455
Q ss_pred HHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----------cccCc-----
Q 000129 723 CYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMVKS----- 786 (2114)
Q Consensus 723 ~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~----------~~~~~----- 786 (2114)
+++.+.+... ++|+|||+|.|..+..+...-+.....+..++..+..+.......|..| ..|..
T Consensus 355 l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 355 LLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 6666666655 5699999999988777666666555444444333332221111122221 12211
Q ss_pred ---------chhhhhcc-CceEEecCCCCH--HHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEE--EecceeccCC
Q 000129 787 ---------NDLKDLLP-YGFAIHHAGMTR--GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPE 852 (2114)
Q Consensus 787 ---------~~L~~ll~-~gv~~hHagl~~--~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~ 852 (2114)
+.|+..++ ..|...|+.+.. .+++.+++.|++|+++|||+|+++++|+|+|++++| ++.+...+.+
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 23445443 478888999874 678999999999999999999999999999999987 4545444444
Q ss_pred CCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 853 ~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
..+..+-....|+|++|||||.+ ..|.+++.|..++...+.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 44444556788999999999965 779999999887644443
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=296.29 Aligned_cols=342 Identities=24% Similarity=0.366 Sum_probs=222.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
++.-.|+.+|.+.+..|+ ++|+||++|||+|||.+|...+++++.... +.|||++||++-|+.|+...|
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHH
Confidence 345589999999999999 678999999999999999999999987753 359999999999999999888
Q ss_pred HHhhccCCcEEEEEeCCC-ccCh--hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQ-TLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~-~~~~--~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (2114)
+..+.+ -.+....||. .... ......+|+|+||..+ +.|.....+. ++.+.++||||||+-.. ...+..+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc--cccHHHH
Confidence 877654 3444444553 2222 2356889999999987 4444444332 78899999999998543 3334455
Q ss_pred HHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhc---cc--------------------------------------
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRV---NL-------------------------------------- 684 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l~~---~~-------------------------------------- 684 (2114)
+...+.. .....||+|||||+++ .+.+...+.. ..
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 5444332 2234499999999763 2222222110 00
Q ss_pred ----------cCceEeecC---Ccc--cc----------cceeE--EE---------------eec------------cC
Q 000129 685 ----------EKGLFYFDN---SYR--PV----------PLSQQ--YI---------------GIQ------------VK 710 (2114)
Q Consensus 685 ----------~~~~~~f~~---~~r--pv----------~l~~~--~~---------------~~~------------~~ 710 (2114)
..+++.... .+. ++ +-.++ +. ++. ..
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 000000000 000 00 00000 00 000 00
Q ss_pred chhHH--------------HHHhhH----------------HHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHh
Q 000129 711 KPLQR--------------FQLMND----------------LCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (2114)
Q Consensus 711 ~~~~~--------------~~~~~~----------------~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2114)
...++ ...|++ .+.+.+.++ ....++||||.+|..|..+-++|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 00111 011111 111222222 235689999999999999998887521
Q ss_pred hcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCC
Q 000129 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2114)
Q Consensus 758 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2114)
....... .+++.|-+.-..||++.++..+++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~--------------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAE--------------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccc--------------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 1000000 12223333334799999999999999999999999999999999999
Q ss_pred ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
.+++||. ||..+ ++...+||.|| ||. +.|+++++++..+..
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEVI 532 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhHH
Confidence 9999999 77766 78899999999 996 679999999854433
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=293.13 Aligned_cols=366 Identities=26% Similarity=0.400 Sum_probs=235.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|..+|.+.+.. ...++.++|+|||.+|||.+-..+|-..+.... .--+||++|+++|+.|...++..++
T Consensus 511 ~Pd~WQ~elLDs-vDr~eSavIVAPTSaGKTfisfY~iEKVLResD---------~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDS-VDRNESAVIVAPTSAGKTFISFYAIEKVLRESD---------SDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhh-hhcccceEEEeeccCCceeccHHHHHHHHhhcC---------CCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999985 466677999999999999998888877776542 2379999999999999999999888
Q ss_pred ccCC-cEEEEEeCCCccChhh-hccceEEEcCHhHHHHHHhc-cCCCcccccccEEEEeccccccc-CCchhHHHHHHHH
Q 000129 575 QMYD-VKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2114)
Q Consensus 575 ~~~g-i~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~d~l~r~-~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (2114)
.... .+-..+.|+...+-+. .-+|+|+||-||.++.++-. .....+..+++++|+||+|+++. +-|-.+|.++-.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 4221 2223334443332221 12799999999999766544 23346889999999999999987 567667765543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccc---cCc--eEeecCC---------------------------cccc
Q 000129 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL---EKG--LFYFDNS---------------------------YRPV 698 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~---~~~--~~~f~~~---------------------------~rpv 698 (2114)
..+.++++|||+.|+..+..|+.... ... ...+... .|.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 36789999999999999999997210 000 0000000 0000
Q ss_pred cc----------eeEEEeecc----------------------------CchhH---------------------HHHHh
Q 000129 699 PL----------SQQYIGIQV----------------------------KKPLQ---------------------RFQLM 719 (2114)
Q Consensus 699 ~l----------~~~~~~~~~----------------------------~~~~~---------------------~~~~~ 719 (2114)
.. ...+..+.. ..... +.+..
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 00 000000000 00000 00000
Q ss_pred h-------------------HHHHHHHH----HHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccc---ccc------
Q 000129 720 N-------------------DLCYEKVV----AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDT---LGR------ 765 (2114)
Q Consensus 720 ~-------------------~~~~~~i~----~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~---l~~------ 765 (2114)
. +.+.+.+. +... .-|.|+|--.|..|+++|..+......... -..
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 00001111 1111 348899999998888877655432110000 000
Q ss_pred ---------------------------------------ccccCch-hHHHHHhhhccc--CcchhhhhccCceEEecCC
Q 000129 766 ---------------------------------------FLKEDSV-SREILQSHTDMV--KSNDLKDLLPYGFAIHHAG 803 (2114)
Q Consensus 766 ---------------------------------------~l~~~~~-~~~~l~~~~~~~--~~~~L~~ll~~gv~~hHag 803 (2114)
|+..... ....+..+.... .+..+-+++-+|+|+||||
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 0000000 000000001111 1245667788999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
|.+..|..||-+||.|++.||+||.||+-|||.|..+||+-++ .-.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gD---------sLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGD---------SLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecc---------ccccCchhHHhhhccccccccccccceE
Confidence 9999999999999999999999999999999999999999643 2346778899999999999999999988
Q ss_pred EEcCC
Q 000129 884 IITGH 888 (2114)
Q Consensus 884 il~~~ 888 (2114)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 87554
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=290.23 Aligned_cols=343 Identities=18% Similarity=0.260 Sum_probs=224.0
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1335 LYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1335 l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
+|...-.++.+|.+....++ ++|+||++|||+|||++|...+++++.. .+.+ |+|+++|++-|+.|+...++ .+
T Consensus 56 ~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw-~p~~--KiVF~aP~~pLv~QQ~a~~~-~~ 129 (746)
T KOG0354|consen 56 IYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW-RPKG--KVVFLAPTRPLVNQQIACFS-IY 129 (746)
T ss_pred cccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc-CCcc--eEEEeeCCchHHHHHHHHHh-hc
Confidence 34445689999999999998 7789999999999999999999999998 4556 99999999999999997766 45
Q ss_pred cCCCCcEEEEEcCC-cccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1415 GQGLGMRVVELTGE-TAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~-~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
+. +..+....|+ .+.. ...+...+|+|+||+.+.+-+....... ++.+.++||||||+-.. ...|-.++..+
T Consensus 130 ~~--~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~k--n~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 130 LI--PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTSK--NHPYNNIMREY 204 (746)
T ss_pred cC--cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEcccccccc--cccHHHHHHHH
Confidence 43 2444445555 3322 3455677999999999877666533333 88999999999997643 34555555444
Q ss_pred HHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCce-----------eecCCCC--CccCcEEE--------------
Q 000129 1492 RYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGL-----------FNFPPGV--RPVPLEIH-------------- 1543 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~-----------~~f~~~~--rpv~l~~~-------------- 1543 (2114)
.... ....||+|||||+++. ..+...+..-...+ +...... .|+++...
T Consensus 205 l~~k---~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 205 LDLK---NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHhh---hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 3332 2344999999999852 23333322110000 0000000 00000000
Q ss_pred -------------------------------Eecccccch--------HH------------------------------
Q 000129 1544 -------------------------------IQGVDITNF--------EA------------------------------ 1554 (2114)
Q Consensus 1544 -------------------------------~~~~~~~~~--------~~------------------------------ 1554 (2114)
..++..... ..
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 000000000 00
Q ss_pred H--HH------------hcC------------HHHHHHHH----HHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCC
Q 000129 1555 R--MQ------------AMT------------KPTFTAIV----QHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602 (2114)
Q Consensus 1555 ~--~~------------~~~------------~~~~~~i~----~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~ 1602 (2114)
+ .. .|. .+.+..+. .+. .+..++||||.+|..|..+-..|..... .+
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~-~~ 440 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE-LG 440 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh-cc
Confidence 0 00 000 01111111 111 2345799999999999888877754111 11
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE
Q 000129 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV 1682 (2114)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI 1682 (2114)
.... .+.+.|-+.--.||++.++..+++.|++|.++|||||++++.|+|++.+.+||
T Consensus 441 ir~~-----------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI 497 (746)
T KOG0354|consen 441 IKAE-----------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI 497 (746)
T ss_pred cccc-----------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE
Confidence 1101 11222333333789999999999999999999999999999999999999999
Q ss_pred EeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1683 MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1683 ~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.|+.-.++...+||+|| || ...|+|+++++...
T Consensus 498 ----------cYd~~snpIrmIQrrGR-gR---a~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 498 ----------CYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTTGSE 530 (746)
T ss_pred ----------EecCCccHHHHHHHhcc-cc---ccCCeEEEEEcchh
Confidence 67777789999999999 99 47999999998544
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=292.67 Aligned_cols=411 Identities=16% Similarity=0.210 Sum_probs=289.2
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v 1422 (2114)
.+.+.+.++ +++.+++++|+|.||||||+.....|+....... +..+++|..|+|--|..+++++....+...|-.|
T Consensus 175 ~~~r~~Il~-~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 175 YKMRDTILD-AIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred HHHHHHHHH-HHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 344444454 4466888999999999999999999999877644 4459999999999999999999877776667666
Q ss_pred EEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCc
Q 000129 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKI 1502 (2114)
Q Consensus 1423 ~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~ 1502 (2114)
+.-.+-.+. .-..+.+.+||.+.+. |+......+.++.++|+||+|.-.-+. .. ++--++.+... ++++
T Consensus 252 GYqvrl~~~---~s~~t~L~fcTtGvLL---r~L~~~~~l~~vthiivDEVHER~i~~-Df---lLi~lk~lL~~-~p~L 320 (924)
T KOG0920|consen 252 GYQVRLESK---RSRETRLLFCTTGVLL---RRLQSDPTLSGVTHIIVDEVHERSINT-DF---LLILLKDLLPR-NPDL 320 (924)
T ss_pred eEEEeeecc---cCCceeEEEecHHHHH---HHhccCcccccCceeeeeeEEEccCCc-cc---HHHHHHHHhhh-CCCc
Confidence 654443222 2234789999999854 444457789999999999999543221 12 44444444433 5799
Q ss_pred eEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEe-------cccccchHHH----------------HHhc
Q 000129 1503 RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-------GVDITNFEAR----------------MQAM 1559 (2114)
Q Consensus 1503 riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~-------~~~~~~~~~~----------------~~~~ 1559 (2114)
++|+||||+ |++.+..|+|..+ ++..+. |..|+..++. .+........ ...+
T Consensus 321 kvILMSAT~-dae~fs~YF~~~p--vi~i~g--rtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 321 KVILMSATL-DAELFSDYFGGCP--VITIPG--RTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred eEEEeeeec-chHHHHHHhCCCc--eEeecC--CCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999 7999999999654 222222 2222221110 0000000000 0012
Q ss_pred CHHHHHHHHHHhc---CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1560 TKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1560 ~~~~~~~i~~~l~---~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
.......+..++. ..+.+|||.|+..++..+...|...+...+. .+.-|
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------~~~~i 447 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------LKFAI 447 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------cceEE
Confidence 3333444444433 3567999999999998888777443321111 12348
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHc
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~G 1708 (2114)
..+|+.|+..+++.|+.....|..+|++||++++.+|.||++.+|| +.-..||...+. ..+.|.+...||.|
T Consensus 448 lplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~G 527 (924)
T KOG0920|consen 448 LPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRG 527 (924)
T ss_pred EeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcc
Confidence 8999999999999999999999999999999999999999999999 334678877543 34678899999999
Q ss_pred ccCCCCCCCceEEEEEeecCcHHHHHHHHHhccCCC---------CccccCCCccchHHHHHH--------HHHHHHHHH
Q 000129 1709 HASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPN---------YYNLQGVSHRHLSDHLSE--------LVENTISDL 1771 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~nP~---------~y~l~~~s~~~l~~~lse--------lve~~l~~L 1771 (2114)
|||| -..|.||.++.... |.++.....-|. ...++-+....+.+||+. .|..++..|
T Consensus 528 RAGR---v~~G~cy~L~~~~~---~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L 601 (924)
T KOG0920|consen 528 RAGR---VRPGICYHLYTRSR---YEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERL 601 (924)
T ss_pred cccC---ccCCeeEEeechhh---hhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999 47999999998654 333332222222 223344455556677764 588999999
Q ss_pred HHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhh
Q 000129 1772 EASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSS 1810 (2114)
Q Consensus 1772 ~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~s 1810 (2114)
.+.|+++.++ .+|++|+.++.+|+++...+++...
T Consensus 602 ~~igaL~~~e----~LT~LG~~la~lPvd~~igK~ll~g 636 (924)
T KOG0920|consen 602 KQIGALDESE----ELTPLGLHLASLPVDVRIGKLLLFG 636 (924)
T ss_pred HHhccccCcc----cchHHHHHHHhCCCccccchhheeh
Confidence 9999997655 6999999999999999999987653
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=295.00 Aligned_cols=365 Identities=18% Similarity=0.192 Sum_probs=231.5
Q ss_pred EEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch-----hh
Q 000129 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL-----KL 1435 (2114)
Q Consensus 1361 li~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~-----~~ 1435 (2114)
|+.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+ .++..++|+.+... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHH
Confidence 578999999999997776655544 44 899999999999999999998774 56888898776532 12
Q ss_pred c--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC--CCCchHHHH-HHHHHHHHhhcCCCceEEEEccc
Q 000129 1436 L--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVI-VSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1436 l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~--~~g~~le~i-~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
+ ..++|||+|+..+. ..+.++++|||||+|.... ..++.|..- +..++.. ..+.++|++|||
T Consensus 72 ~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~----~~~~~vil~SAT 138 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK----KFNCPVVLGSAT 138 (505)
T ss_pred HHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH----hcCCCEEEEeCC
Confidence 2 24589999987531 3478899999999997653 234443221 1222211 247899999999
Q ss_pred CCChhHHHHHhcCCCCceeecCC--CCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHH-
Q 000129 1511 LANAKDLGEWIGATSHGLFNFPP--GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV- 1587 (2114)
Q Consensus 1511 l~n~~dla~wl~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a- 1587 (2114)
+ ..+.+....... ........ ..++.| .+.+....... ....+...++..+.+.+..++++|||+|+|.-+
T Consensus 139 P-sles~~~~~~g~-~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~ 212 (505)
T TIGR00595 139 P-SLESYHNAKQKA-YRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSK 212 (505)
T ss_pred C-CHHHHHHHhcCC-eEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCC
Confidence 5 454444332211 11111111 112222 22332221111 012345667788888888899999999998743
Q ss_pred ----HHHHHH-------------------HHHhhccCCcccccccCCCcccchhh---HhhhhHHHHHHHhccceEeecC
Q 000129 1588 ----RLTAVD-------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1588 ----~~la~~-------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
..+... .|++|.........+..|....+... .+++.+..-..+...+|..+|+
T Consensus 213 ~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~ 292 (505)
T TIGR00595 213 NLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDS 292 (505)
T ss_pred eeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEec
Confidence 222211 12333333222222555555444432 4555554444445678999999
Q ss_pred CCCHHHH--HHHHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeEe-cCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1642 GLNKTDQ--EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYY-DGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1642 ~ls~~dR--~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~y-d~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+++...+ ..+++.|++|+++|||+|+++++|+|+|++.+|+ .+.... .....+........|+|++|||||. +.
T Consensus 293 d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~--~~ 370 (505)
T TIGR00595 293 DTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA--ED 370 (505)
T ss_pred ccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC--CC
Confidence 9987766 8999999999999999999999999999998664 221100 0000011112357899999999997 67
Q ss_pred ceEEEEEeecCcHHHH------------HHHH---HhccCCCCccccCCCccc
Q 000129 1718 SGKCVILCHAPRKEYY------------KKFL---RLTQNPNYYNLQGVSHRH 1755 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~------------~~~l---Rl~~nP~~y~l~~~s~~~ 1755 (2114)
.|.+++.+..++...+ ..-+ +....|+|..+..+...+
T Consensus 371 ~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~ 423 (505)
T TIGR00595 371 PGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRG 423 (505)
T ss_pred CCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEec
Confidence 8999999977764322 2222 667899999877654433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=322.48 Aligned_cols=327 Identities=18% Similarity=0.215 Sum_probs=215.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|| +|+++|.++++.++.+.+ ++++||||||||++++++.+.... .+.+++||+||++|+.|+++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 488 699999999999998865 999999999999976665554322 1348999999999999999999
Q ss_pred HHhhccC--CcEEEEEeCCCccChhh-------hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc---
Q 000129 571 SNRLQMY--DVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD--- 637 (2114)
Q Consensus 571 ~~~~~~~--gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d--- 637 (2114)
+.++..+ ++++..++|+.+...+. .+.++|+|+||+++ +.+.+. ...++++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-----~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-----KHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-----hhCCCCEEEEECceecccccc
Confidence 9977654 56778888987765432 13589999999986 332221 125689999999999864
Q ss_pred ---------CCchhHHH----HHH---------------HHHHHHhhcccccc-EEEEccccCChHHHHHHHhccccCce
Q 000129 638 ---------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGL 688 (2114)
Q Consensus 638 ---------~rg~~le~----iv~---------------rl~~~~~~~~~~~r-iv~lSATlpn~~dva~~l~~~~~~~~ 688 (2114)
++.+.+.. ++. ++.......+...+ ++.+|||++...+...+++... .
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l---~ 294 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL---G 294 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe---E
Confidence 44444432 211 11111112233444 5779999986556666664221 1
Q ss_pred EeecCCcccc--cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHH---HHHHHHHHHHhhccccc
Q 000129 689 FYFDNSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTL 763 (2114)
Q Consensus 689 ~~f~~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~l 763 (2114)
|..+ ..++. .+.+.++... ...+ .. +...+ ... +.++||||+|++.+ +.++..|...++.
T Consensus 295 f~v~-~~~~~lr~i~~~yi~~~---~~~k-~~----L~~ll-~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~---- 359 (1638)
T PRK14701 295 FEVG-SGRSALRNIVDVYLNPE---KIIK-EH----VRELL-KKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK---- 359 (1638)
T ss_pred EEec-CCCCCCCCcEEEEEECC---HHHH-HH----HHHHH-HhC-CCCeEEEEeccccchHHHHHHHHHHHCCCe----
Confidence 2222 22221 2222332211 1111 11 22222 222 46899999998864 7888888875433
Q ss_pred ccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEech----HhhhhcCCCc-
Q 000129 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA- 838 (2114)
Q Consensus 764 ~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~- 838 (2114)
++.+||+ |..+++.|++|+++|||||+ +++||||+|+
T Consensus 360 ---------------------------------a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 360 ---------------------------------IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred ---------------------------------EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCc
Confidence 4556885 88999999999999999994 8999999999
Q ss_pred eEEEEecceeccCCCCccccCCHH-------------HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC
Q 000129 839 HTVIIKGTQIYNPEKGAWTELSPL-------------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2114)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~-------------~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~ 900 (2114)
+++||+ |+.|+.++ |+. ..+++.|||||.| ..+.++............+++..
T Consensus 402 Vryvi~----~~~Pk~~~---~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 402 IRFAVF----YGVPKFRF---RVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cCEEEE----eCCCCCCc---chhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 999999 77665322 222 3456679999987 45666544444444445545444
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=302.89 Aligned_cols=333 Identities=21% Similarity=0.331 Sum_probs=251.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+...| |.+.|+|-|.+|+..++.+.+ ++|..|||+||++||++|++- .++ -.|+|.|..+|+..+...+.
T Consensus 256 l~~~F-g~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l------~~g--itvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 256 LKEVF-GHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALL------LGG--VTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHh-ccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeeccccc------cCC--ceEEeccHHHHHHHHHHhhh
Confidence 33444 599999999999999888777 999999999999999999872 234 78999999999998877653
Q ss_pred HHhcCCCCcEEEEEcCCcccc-----hhhccCC----cEEEEChhhHHHHHhhhcccccccc---eeEEEecccccccCC
Q 000129 1412 IKFGQGLGMRVVELTGETAMD-----LKLLEKG----QIIISTPEKWDALSRRWKQRKYVQQ---VSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~-----~~~l~~~----~IIV~TPe~l~~l~r~~~~~~~l~~---v~liIiDEaH~l~~~ 1479 (2114)
+ .++....++|+.... .+.+..+ +|++.|||++...-+-......+.. +.++||||||++..|
T Consensus 326 ----~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 326 ----K-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred ----h-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 1 378888888877653 2333333 8999999998543222112223444 899999999999755
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
|+.+..-..++..+....+ .+.+|++|||... .+|+.+-|+.....++. .+..+-.+...+..-....
T Consensus 401 -gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~~~------ 470 (941)
T KOG0351|consen 401 -GHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTDKD------ 470 (941)
T ss_pred -cccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccCcc------
Confidence 4667777777776665544 4899999999844 45999999987655443 3333334444443322100
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
........+ ....+..++||||.+|+.|+.++..|.. .+...+
T Consensus 471 -~~~~~~~~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~~-----------------------------------~~~~a~ 513 (941)
T KOG0351|consen 471 -ALLDILEES-KLRHPDQSGIIYCLSRKECEQVSAVLRS-----------------------------------LGKSAA 513 (941)
T ss_pred -chHHHHHHh-hhcCCCCCeEEEeCCcchHHHHHHHHHH-----------------------------------hchhhH
Confidence 001111222 2226778899999999999999977743 124578
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+||+||++.+|..|.+.|..++++|+|||=.+.+|+|.|+|+.|| |+..|.++..|.|-+|||||. +.
T Consensus 514 ~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi----------H~~lPks~E~YYQE~GRAGRD--G~ 581 (941)
T KOG0351|consen 514 FYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI----------HYSLPKSFEGYYQEAGRAGRD--GL 581 (941)
T ss_pred hhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE----------ECCCchhHHHHHHhccccCcC--CC
Confidence 999999999999999999999999999999999999999999999 999999999999999999998 57
Q ss_pred ceEEEEEeecCcHHHHHHHHH
Q 000129 1718 SGKCVILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lR 1738 (2114)
...|++|+...+....+.+++
T Consensus 582 ~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 582 PSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred cceeEEecchhHHHHHHHHHH
Confidence 899999998876655555553
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=312.21 Aligned_cols=304 Identities=23% Similarity=0.212 Sum_probs=200.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ +|+++|..+++.++.+. +++++||||||||. |.++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g~-dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGE-SFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCC-cEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 66 89999999999998774 59999999999996 44455444432 13589999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccCh---h-h-----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C---
Q 000129 572 NRLQMYDVKVRELSGDQTLTR---Q-Q-----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~---~-~-----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (2114)
++....++.+..++|+..... . . ...++|+|+||+++...... .....+++|||||||++.+ .
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888887765321 1 1 13589999999987332221 2345599999999999875 1
Q ss_pred --------Cc-hhHHHHHHHHHH----------------HHhh-ccccccEEEEccccCChHHHH-HHHhccccCceEee
Q 000129 639 --------RG-PVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (2114)
Q Consensus 639 --------rg-~~le~iv~rl~~----------------~~~~-~~~~~riv~lSATlpn~~dva-~~l~~~~~~~~~~f 691 (2114)
+. ..++.++..+.. .+.. .....|++++|||++.. .+. .+++... .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~ll---~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFRELL---GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhccc---eEEe
Confidence 21 234444433211 0000 11267899999998742 121 1222110 0111
Q ss_pred cCC-cccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHHHhhccccccccc
Q 000129 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (2114)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~l~~~l 767 (2114)
... ...-.+.+.++... .+...+. . +.... +.++||||++++. +..++..|...++.
T Consensus 297 ~~~~~~~rnI~~~yi~~~-----~k~~~L~----~-ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-------- 357 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE-----DSVEKLV----E-LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGIN-------- 357 (1176)
T ss_pred cCcccccCCceEEEEEcc-----cHHHHHH----H-HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCc--------
Confidence 111 11112333333222 1111111 1 22222 4589999999887 99999998876533
Q ss_pred ccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEE
Q 000129 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2114)
++..||+| +| .++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 358 -----------------------------v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 358 -----------------------------AELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred -----------------------------EEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 45669999 22 349999999999999 689999999999 8999
Q ss_pred EecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 99 6666533211123468999999863
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=260.06 Aligned_cols=329 Identities=19% Similarity=0.269 Sum_probs=231.0
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHF-NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1331 ~~~~l~~gf~~~-~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.+..+|. +..| ++.|.+|+..+..++.+|.|+.|||+||++||.||.|- .++ ..|++.|..+|+..+...
T Consensus 10 aLKK~FG-h~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------~~g--ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 10 ALKKLFG-HKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------HGG--ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHhC-chhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------hCC--eEEEehHHHHHHHHHHHH
Confidence 4566665 6655 79999999999999999999999999999999999883 244 889999999999999998
Q ss_pred HHHHhcCCCCcEEEEEcCCcccc--------hh-hccCCcEEEEChhhHHH-----HHhhhcccccccceeEEEeccccc
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMD--------LK-LLEKGQIIISTPEKWDA-----LSRRWKQRKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~--------~~-~l~~~~IIV~TPe~l~~-----l~r~~~~~~~l~~v~liIiDEaH~ 1475 (2114)
+. ++ .+.+..+.+..+.. ++ .-.+..+++.|||.... ++... ..-..+.++|+||||+
T Consensus 81 L~-~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 81 LK-RL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVDEAHC 152 (641)
T ss_pred HH-hc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEechhhh
Confidence 87 33 34444444443322 11 11234899999998532 22221 1234578999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCC-ceeecCCCCCccCcEEEEecccccch
Q 000129 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1476 l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~ 1552 (2114)
+..|+ +.+..-.-++-.+.+.+ .++..|+|+||... .+|+..-|..... .+|. .|.+|.. + -+
T Consensus 153 VSQWG-HDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~N-L----------FY 218 (641)
T KOG0352|consen 153 VSQWG-HDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDN-L----------FY 218 (641)
T ss_pred Hhhhc-cccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhcc-Ccchhhh-h----------hH
Confidence 97654 33333333444454443 47889999999743 2467666654421 1222 2233321 0 00
Q ss_pred HHHHHhcCHHHHHHH----HHHhc-----------CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1553 EARMQAMTKPTFTAI----VQHAK-----------NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i----~~~l~-----------~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
...+.......+..+ ...+. ..+-.||||.||.+|+.+|-.|.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~---------------------- 276 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE---------------------- 276 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh----------------------
Confidence 111111111111111 11111 12348999999999999996652
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~ 1697 (2114)
.-+.+...||+||...+|..|.+.+.+|++.||+||..+.+|||-|++++|| |++++
T Consensus 277 -------------~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi----------HW~~~ 333 (641)
T KOG0352|consen 277 -------------IAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI----------HWSPS 333 (641)
T ss_pred -------------hcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE----------ecCch
Confidence 2234556799999999999999999999999999999999999999999999 99999
Q ss_pred CCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1698 ~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
.+++-|.|-.|||||. +....|-+++...+++.+.-++
T Consensus 334 qn~AgYYQESGRAGRD--Gk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRD--GKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred hhhHHHHHhccccccC--CCccceeeeecccchHHHHHHH
Confidence 9999999999999998 6789999999988887766444
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=303.16 Aligned_cols=328 Identities=23% Similarity=0.262 Sum_probs=246.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|.+.+++-|.++|...+.+.+ ++|.+|||+||++||.+|++-. +...|+|.|..+|++.+...+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 5899999999999998777766 8999999999999999998643 126899999999999999887
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-------hc--cceEEEcCHhHHH---HHHhccCCCcccccccEEEEeccccccc-
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IE--ETQIIVTTPEKWD---IITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~--~~~IiV~TPek~d---~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (2114)
.. .+|....++|+.....+. .+ ..+|++.|||+.- .+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 43 488999999887654321 12 6799999999862 2222221111222389999999999854
Q ss_pred --CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 638 --~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
+|+|.+..+-.- +...+.+.+|+||||... .+|+..-|+... ...+..++-+..+...+..-..+.
T Consensus 401 gHdFRp~Yk~l~~l-----~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~---~~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLL-----RIRFPGVPFIALTATATERVREDVIRSLGLRN---PELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHH-----HhhCCCCCeEEeehhccHHHHHHHHHHhCCCC---cceecccCCCCCceEEEEeccCcc--
Confidence 566666544321 123445899999999743 678888887642 225566666666654443222111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
. ...+...+........+||+|.+|++|+.++..|+..+..
T Consensus 471 ~-----~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---------------------------------- 511 (941)
T KOG0351|consen 471 A-----LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---------------------------------- 511 (941)
T ss_pred c-----hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----------------------------------
Confidence 0 1112233444555779999999999999999999986633
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.+++||||+..+|..|.+.|-.++++|+|||=++++|||.|+|+.||+ |+.++ |...|.|-+|||||
T Consensus 512 ---a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 512 ---AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred ---hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 345699999999999999999999999999999999999999999999 77666 78889999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHHHhhcCC
Q 000129 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~~ll~~~ 901 (2114)
.| ....|++++...+...+..++...
T Consensus 579 DG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CC--CcceeEEecchhHHHHHHHHHHcc
Confidence 98 568999999998877777665543
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=286.98 Aligned_cols=428 Identities=17% Similarity=0.160 Sum_probs=285.8
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh-ccCC
Q 000129 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYD 578 (2114)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~-~~~g 578 (2114)
+.+.+-.+++.+..++|+|.||||||+.....||....... ...++++..|+|--|..+++++.... ...|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 44555556788888999999999999999999998865542 35689999999999999999887543 3345
Q ss_pred cEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcc
Q 000129 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2114)
Q Consensus 579 i~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~ 658 (2114)
-.|+.-.+- ..+....+.+.+||.+ +++|.......+..+..||+||+|.=.- -...+-.++..+ -...
T Consensus 249 ~~VGYqvrl---~~~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i-~~DflLi~lk~l----L~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRL---ESKRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSI-NTDFLLILLKDL----LPRN 317 (924)
T ss_pred CeeeEEEee---ecccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccC-CcccHHHHHHHH----hhhC
Confidence 444433332 2222335899999999 5666665567889999999999996321 111232233333 2345
Q ss_pred ccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEE----------e-------eccCc----------
Q 000129 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI----------G-------IQVKK---------- 711 (2114)
Q Consensus 659 ~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~----------~-------~~~~~---------- 711 (2114)
++.|+|+||||+ |.+.+..|++.. ++....+...||. .+|. . .....
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~---pvi~i~grtfpV~--~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGC---PVITIPGRTFPVK--EYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCC---ceEeecCCCcchH--HHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999998 678888888743 3333333333332 1110 0 00000
Q ss_pred -hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 712 -PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 712 -~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
..-.+ .+...+...+.+....+.+|||.++..++..+...|.......+. .
T Consensus 392 ~~~id~-~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~-~-------------------------- 443 (924)
T KOG0920|consen 392 EPEIDY-DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS-L-------------------------- 443 (924)
T ss_pred cccccH-HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-c--------------------------
Confidence 00000 111112222333333689999999999999999888654322211 0
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecc----eeccCCCCcc----ccCCHH
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPL 862 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~~----~~~s~~ 862 (2114)
..-+-..|+.|+..+++.|++....|..+|++||++++.+|.+|+|.+||+.. ..||+..+.. .++|.+
T Consensus 444 ---~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkA 520 (924)
T KOG0920|consen 444 ---KFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKA 520 (924)
T ss_pred ---ceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecccc
Confidence 11255679999999999999999999999999999999999999999999863 5688876533 778999
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhc-cccChHHHHHHHHhhHHH
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG-TVQNAKEACNWIGYTYLY 941 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~-~i~~~~~~~~wl~~t~~~ 941 (2114)
...||.|||||. ..|.||-+++... |.+++. ..++.+.++..|- |+++. .+-...++..||+
T Consensus 521 na~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~-----~~q~PEilR~pL~-~l~L~iK~l~~~~~~~fLs----- 583 (924)
T KOG0920|consen 521 NAKQRRGRAGRV---RPGICYHLYTRSR---YEKLML-----AYQLPEILRTPLE-ELCLHIKVLEQGSIKAFLS----- 583 (924)
T ss_pred chHHhcccccCc---cCCeeEEeechhh---hhhccc-----ccCChHHHhChHH-HhhheeeeccCCCHHHHHH-----
Confidence 999999999997 5899999988654 333332 1223333332222 22221 1222222333332
Q ss_pred HhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcC
Q 000129 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK 1021 (2114)
Q Consensus 942 ~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1021 (2114)
++ ++.+..+.|..|+..|...|.+..++ .+|+||+.+|.+++++.-.++..-..-
T Consensus 584 -ka-------------------ldpP~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~i 638 (924)
T KOG0920|consen 584 -KA-------------------LDPPPADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAI 638 (924)
T ss_pred -Hh-------------------cCCCChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhh
Confidence 21 22223356899999999999998553 899999999999999998888765444
Q ss_pred CCCC
Q 000129 1022 PTMG 1025 (2114)
Q Consensus 1022 ~~~~ 1025 (2114)
.+|-
T Consensus 639 f~cL 642 (924)
T KOG0920|consen 639 FGCL 642 (924)
T ss_pred cccc
Confidence 4443
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=301.64 Aligned_cols=325 Identities=20% Similarity=0.244 Sum_probs=220.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
.-.++++|.+++..++++ |++|++|||+|||++|.+++...+.. +++ ++|||+|+++|+.|+.+.+++.++ ..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~-~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK--KGG--KVLILAPTKPLVEQHAEFFRKFLN-IP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh--CCC--eEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 447899999999998875 79999999999999999999887743 445 999999999999999999986543 23
Q ss_pred CcEEEEEcCCcccch--hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+.++..++|+.+.+. ..+..++|+|+||+.+...+.. .+..+.++++||+||||++.+.. .+..+..+.+
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~--~~~~i~~~~~---- 157 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY--AYVYIAERYH---- 157 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc--cHHHHHHHHH----
Confidence 558888999877652 3456789999999988655433 34467889999999999886443 2222333222
Q ss_pred hcCCCceEEEEcccCCCh-hH---HHHHhcCCCCceeecCCCC----Cc----cCcEEEEecccc---------------
Q 000129 1497 QVENKIRIVALSTSLANA-KD---LGEWIGATSHGLFNFPPGV----RP----VPLEIHIQGVDI--------------- 1549 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~-~d---la~wl~~~~~~~~~f~~~~----rp----v~l~~~~~~~~~--------------- 1549 (2114)
......++++||||+... .. +...++... +.+.+.. .+ ..+.......+.
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~---v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEH---VEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceE---EEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 223467899999998532 23 333333221 1111111 00 000000000000
Q ss_pred --------------------cchH-------HH------------------------------------------HHh--
Q 000129 1550 --------------------TNFE-------AR------------------------------------------MQA-- 1558 (2114)
Q Consensus 1550 --------------------~~~~-------~~------------------------------------------~~~-- 1558 (2114)
.... .. ...
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 0000 00 000
Q ss_pred -----------------------------cCHHHHHHHHHHh------cCCCCEEEEeCChHHHHHHHHHHHHhhccCCc
Q 000129 1559 -----------------------------MTKPTFTAIVQHA------KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1559 -----------------------------~~~~~~~~i~~~l------~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~ 1603 (2114)
...+.+..+...+ ..++++||||++++.|..++..|...
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~------ 388 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE------ 388 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC------
Confidence 0000111111111 35678999999999998888777321
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEee--------cCCCCHHHHHHHHHHHhcCCceEEEecCccccccCC
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL--------HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL 1675 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~--------H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdi 1675 (2114)
+..+..+ |++|++.+|..+++.|++|.++|||||+++++|+|+
T Consensus 389 -----------------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi 439 (773)
T PRK13766 389 -----------------------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI 439 (773)
T ss_pred -----------------------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc
Confidence 1112233 456999999999999999999999999999999999
Q ss_pred CCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1676 p~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|.+++|| +|+.+.+...|+||+||+||. ..|.+++++....
T Consensus 440 ~~~~~VI----------~yd~~~s~~r~iQR~GR~gR~---~~~~v~~l~~~~t 480 (773)
T PRK13766 440 PSVDLVI----------FYEPVPSEIRSIQRKGRTGRQ---EEGRVVVLIAKGT 480 (773)
T ss_pred ccCCEEE----------EeCCCCCHHHHHHHhcccCcC---CCCEEEEEEeCCC
Confidence 9999999 788888999999999999995 4688998887654
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=286.49 Aligned_cols=362 Identities=15% Similarity=0.183 Sum_probs=219.6
Q ss_pred ccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCC--CcEEEEccC
Q 000129 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA--DNILLCAPT 520 (2114)
Q Consensus 443 ~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~--~nvlv~APT 520 (2114)
+.+++......++..-++.+|......+..... -..+|-.+ ..-..|+|+|.+++..++..+ .+.++++||
T Consensus 210 f~i~~~~~~~~k~~~~~~~~p~~~~~~f~~~~~---~~~~~i~L----~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPt 282 (732)
T TIGR00603 210 FEIDQEQVEEVKKRCIELDYPLLEEYDFRNDTV---NPDLNIDL----KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPC 282 (732)
T ss_pred EEECHHHHHHHHHHHHHcCCchhhhhhhccccc---CCCCCccc----ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCC
Confidence 555555555555555566777644332221110 00111111 112478999999999988654 368999999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceE
Q 000129 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQI 600 (2114)
Q Consensus 521 GsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~I 600 (2114)
|+|||++++.++.. +. .++|||+|+..|+.|+.++|.+++......+..++|+.... ......|
T Consensus 283 GaGKTlvai~aa~~-l~-------------k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~--~~~~~~V 346 (732)
T TIGR00603 283 GAGKSLVGVTAACT-VK-------------KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER--FHGEAGV 346 (732)
T ss_pred CCChHHHHHHHHHH-hC-------------CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc--cccCCcE
Confidence 99999999866543 21 15999999999999999999987644456788888864321 1234789
Q ss_pred EEcCHhHHHHHHhccCC----Cccc--ccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChH
Q 000129 601 IVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (2114)
Q Consensus 601 iV~TPek~d~l~r~~~~----~~~l--~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~ 674 (2114)
+|+|+..+....++... ...+ ...++||+||||++. .+.+..++..+ . ....+|||||+...+
T Consensus 347 vVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp---A~~fr~il~~l-------~-a~~RLGLTATP~ReD 415 (732)
T TIGR00603 347 VVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP---AAMFRRVLTIV-------Q-AHCKLGLTATLVRED 415 (732)
T ss_pred EEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc---HHHHHHHHHhc-------C-cCcEEEEeecCcccC
Confidence 99999864321111100 0112 357899999999985 23333333222 2 334699999965322
Q ss_pred ----HHHHHHhccccCceEee-------cCCcccccceeEEEeeccC----------chhHHHHHhhHHHHHH---HHH-
Q 000129 675 ----DVALFLRVNLEKGLFYF-------DNSYRPVPLSQQYIGIQVK----------KPLQRFQLMNDLCYEK---VVA- 729 (2114)
Q Consensus 675 ----dva~~l~~~~~~~~~~f-------~~~~rpv~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~---i~~- 729 (2114)
++...++- .++.. .+..-|+......+..+.. .....+..++..-+.. +..
T Consensus 416 ~~~~~L~~LiGP----~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~ 491 (732)
T TIGR00603 416 DKITDLNFLIGP----KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRF 491 (732)
T ss_pred CchhhhhhhcCC----eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHH
Confidence 12111111 11111 0001111111111111100 0001112232221111 222
Q ss_pred H-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 730 V-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 730 ~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+ ..+.++||||.+...+..++..| |+.+.||+++..+
T Consensus 492 he~~g~kiLVF~~~~~~l~~~a~~L------------------------------------------~~~~I~G~ts~~E 529 (732)
T TIGR00603 492 HEQRGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQQE 529 (732)
T ss_pred HhhcCCeEEEEeCCHHHHHHHHHHc------------------------------------------CCceEECCCCHHH
Confidence 2 24679999999988777776654 1234599999999
Q ss_pred HHHHHHHHhCC-CceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCc-----eEE
Q 000129 809 RQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-----GEG 882 (2114)
Q Consensus 809 R~~v~~~F~~g-~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~-----G~~ 882 (2114)
|..+++.|++| .+++||+|.++.+|||+|++++||+ ++++.| |..+|+||+||++|++.++. ...
T Consensus 530 R~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g-----S~~q~iQRlGRilR~~~~~~~~~~~A~f 600 (732)
T TIGR00603 530 RMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG-----SRRQEAQRLGRILRAKKGSDAEEYNAFF 600 (732)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC-----CHHHHHHHhcccccCCCCCccccccceE
Confidence 99999999875 8899999999999999999999998 665433 78899999999999975433 223
Q ss_pred EEEcCCCcHHH
Q 000129 883 IIITGHSELRY 893 (2114)
Q Consensus 883 iil~~~~e~~~ 893 (2114)
|.+++.+..+.
T Consensus 601 Y~lVs~dT~E~ 611 (732)
T TIGR00603 601 YSLVSKDTQEM 611 (732)
T ss_pred EEEecCCchHH
Confidence 66666655443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=292.61 Aligned_cols=346 Identities=20% Similarity=0.202 Sum_probs=224.8
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh
Q 000129 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2114)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2114)
|+.||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++.| |.++..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-----------~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-----------KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 5789999999999987776666432 379999999999999999999876 56788999887654321
Q ss_pred -------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc--CCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 595 -------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
....+|+|+|+..+ ...++++++|||||+|.... ..++.+.. |-+........+.++|+
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---------f~p~~~l~lIIVDEeh~~sykq~~~p~y~a---r~~a~~ra~~~~~~vil 134 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHA---RDVAVYRAKKFNCPVVL 134 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---------cCcccCCCEEEEECCCccccccccCCCCcH---HHHHHHHHHhcCCCEEE
Confidence 23679999999742 13467899999999998653 33444321 11111122346889999
Q ss_pred EccccCChHHHHHHHhccccCceEeecCCcccccc-eeEEEeeccCchhHHHHHhhHHHHHHHHHHhC-CCeEEEEecCh
Q 000129 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSR 743 (2114)
Q Consensus 666 lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr 743 (2114)
+||| |..+.......... ........+...++ ...++...... ....+...+++.+.+... ++|+|||+|+|
T Consensus 135 ~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrr 208 (505)
T TIGR00595 135 GSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPPEVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRR 208 (505)
T ss_pred EeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCCeEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 9999 77666655543211 11111111111111 12222221111 011234455666665554 67999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----------cccCc--------------chhhhhcc-CceE
Q 000129 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMVKS--------------NDLKDLLP-YGFA 798 (2114)
Q Consensus 744 ~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~----------~~~~~--------------~~L~~ll~-~gv~ 798 (2114)
..+..+...=+.....+..++..+..+.......|..| ..|.. +.|+..++ ..|.
T Consensus 209 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~ 288 (505)
T TIGR00595 209 GYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIA 288 (505)
T ss_pred cCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEE
Confidence 88766555545444444444433333222222222222 22221 34555554 5788
Q ss_pred EecCCCCHHHH--HHHHHHHhCCCceEEEechHhhhhcCCCceEEE--EecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 799 IHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 799 ~hHagl~~~~R--~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
..|+.++...+ +.+++.|++|+++|||+|+++++|+|+|++++| ++.+...+.+..+..+-..+.|+|++|||||.
T Consensus 289 ~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~ 368 (505)
T TIGR00595 289 RIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA 368 (505)
T ss_pred EEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC
Confidence 99999987766 889999999999999999999999999999976 46555444444444555778999999999996
Q ss_pred CCCCceEEEEEcCCCcHHHH
Q 000129 875 QYDSYGEGIIITGHSELRYY 894 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e~~~~ 894 (2114)
+ ..|.+++.+..++...+
T Consensus 369 ~--~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 369 E--DPGQVIIQTYNPNHPAI 386 (505)
T ss_pred C--CCCEEEEEeCCCCCHHH
Confidence 5 67999999877664433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=275.49 Aligned_cols=453 Identities=17% Similarity=0.190 Sum_probs=280.4
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEe
Q 000129 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585 (2114)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2114)
.+++.+..+||||.||||||+.....+...-.... .. .++..|-+..|+|--|..+++++..-++.+|-.|+...
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~----~~-~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTTQVPQFLYEAGFASE----QS-SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHhhcCCeEEEecCCCCCccccchHHHHHcccCCc----cC-CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 45566778999999999999987666554422111 01 11336788999999999999998877766665665432
Q ss_pred CCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccc------
Q 000129 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE------ 659 (2114)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~------ 659 (2114)
.++......+.|.++|.+ +|+|.......+..++.|||||||.-. -....+-.+++|+.+.......
T Consensus 341 ---Rfd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 341 ---RFDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred ---EeccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 122223346899999999 777777666788999999999999521 1234445556666655544444
Q ss_pred cccEEEEccccCChHHHHHHHhc---c-ccCceEeecCCcccccceeEEEeeccCchhHHHH-HhhHHHHHHHHHHhCCC
Q 000129 660 HIRLVGLSATLPNYEDVALFLRV---N-LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ-LMNDLCYEKVVAVAGKH 734 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~---~-~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 734 (2114)
+.++|.|||||- +.+|-.. . ...++.-.+.. ..|+..||-.-+ +...+. +..+.| .|++.++.+
T Consensus 414 pLKLIIMSATLR----VsDFtenk~LFpi~pPlikVdAR--QfPVsIHF~krT---~~DYi~eAfrKtc--~IH~kLP~G 482 (1172)
T KOG0926|consen 414 PLKLIIMSATLR----VSDFTENKRLFPIPPPLIKVDAR--QFPVSIHFNKRT---PDDYIAEAFRKTC--KIHKKLPPG 482 (1172)
T ss_pred ceeEEEEeeeEE----ecccccCceecCCCCceeeeecc--cCceEEEeccCC---CchHHHHHHHHHH--HHhhcCCCC
Confidence 789999999984 3333311 1 11223334433 333444443222 222111 112221 345566688
Q ss_pred eEEEEecChHHHHHHHHHHHHHhhccc------ccccccccCch--------------hH-------HH-----HHh---
Q 000129 735 QVLIFVHSRKETAKTARAIRDTALEND------TLGRFLKEDSV--------------SR-------EI-----LQS--- 779 (2114)
Q Consensus 735 ~vLVFv~sr~~~~~~a~~L~~~~~~~~------~l~~~l~~~~~--------------~~-------~~-----l~~--- 779 (2114)
.+|||+....++..+++.|+......- ......++... .. +. ...
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 999999999999999999998743110 00000000000 00 00 000
Q ss_pred -----------hhcccC---cchhhh-------------hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhh
Q 000129 780 -----------HTDMVK---SNDLKD-------------LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2114)
Q Consensus 780 -----------~~~~~~---~~~L~~-------------ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2114)
+.+... .....+ .-+.-|..+++-|+.+++..|++.-..|..-++|||++++.
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 000000 000100 11233667899999999999999999999999999999999
Q ss_pred hcCCCceEEEEec----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCcc
Q 000129 833 GVNLPAHTVIIKG----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904 (2114)
Q Consensus 833 GVdlP~v~vVI~~----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~pi 904 (2114)
.+.+|++.+||++ ...||..+|.. .++|.++.-||+|||||.| .|+||.+++..-.+. .
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~-------~--- 709 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSN-------D--- 709 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhc-------c---
Confidence 9999999999996 45688877732 6789999999999999985 899999987632210 0
Q ss_pred cchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCC
Q 000129 905 ESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNL 984 (2114)
Q Consensus 905 es~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~ 984 (2114)
+.++-..||....+. +.+ +..+-+.-+..-+++.. +.|. ...++.|.+.|...|+
T Consensus 710 -------Fe~fS~PEIlk~Pve---~lv-------LqMKsMnI~kVvnFPFP---tpPd-----~~~L~~Aer~L~~LgA 764 (1172)
T KOG0926|consen 710 -------FEEFSLPEILKKPVE---SLV-------LQMKSMNIDKVVNFPFP---TPPD-----RSALEKAERRLKALGA 764 (1172)
T ss_pred -------hhhhccHHHhhCcHH---HHH-------HHHHhcCccceecCCCC---CCcc-----HHHHHHHHHHHHHhcc
Confidence 111111122211111 111 01111111222222211 1111 1346889999999999
Q ss_pred cccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC
Q 000129 985 VKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2114)
Q Consensus 985 i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2114)
++.+ | .+|+||+.||+|+++|+-.+++.-+....+
T Consensus 765 Ld~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~ 799 (1172)
T KOG0926|consen 765 LDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNL 799 (1172)
T ss_pred cccc---C--CcccccchhcccccChhHHHHHHHHHhhcc
Confidence 9853 3 789999999999999999998876655444
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=299.10 Aligned_cols=333 Identities=23% Similarity=0.334 Sum_probs=218.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
.-+++++|.+++..++.+ |+|+++|||+|||.+|.+++...+.. .+.++|||+|+++|+.|+.+.+++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 447899999999988876 79999999999999999999887732 123899999999999999999998
Q ss_pred hhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (2114)
.+...+.++..++|+...... .....+|+|+||+.+ +.+.. ...+.++++|||||||++....+ ...+..
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~~liVvDEaH~~~~~~~--~~~i~~ 154 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAG----RISLEDVSLLIFDEAHRAVGNYA--YVYIAE 154 (773)
T ss_pred HhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcC----CCChhhCcEEEEECCcccccccc--HHHHHH
Confidence 776445688899998765432 245789999999986 32222 24567899999999999864322 222222
Q ss_pred HHHHHHhhccccccEEEEccccC-ChHHHHHHHhccccCceEeecCCccc----c--cceeEEEeeccCchh--------
Q 000129 649 RTVRQIETTKEHIRLVGLSATLP-NYEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPL-------- 713 (2114)
Q Consensus 649 rl~~~~~~~~~~~riv~lSATlp-n~~dva~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~-------- 713 (2114)
+. .......+++|||||.. +.+.+...+..-... .+.+.+.+.+ . +....++.+......
T Consensus 155 ~~----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~-~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~ 229 (773)
T PRK13766 155 RY----HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIE-HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLN 229 (773)
T ss_pred HH----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCce-EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHH
Confidence 22 22344677999999943 233333333211000 0111111000 0 000000000000000
Q ss_pred --------------------------------HHH---------------------------------------------
Q 000129 714 --------------------------------QRF--------------------------------------------- 716 (2114)
Q Consensus 714 --------------------------------~~~--------------------------------------------- 716 (2114)
..+
T Consensus 230 ~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~ 309 (773)
T PRK13766 230 EALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLER 309 (773)
T ss_pred HHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 000
Q ss_pred ------------------------HHh---h---------HHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHh
Q 000129 717 ------------------------QLM---N---------DLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (2114)
Q Consensus 717 ------------------------~~~---~---------~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2114)
..+ . +.+.+.+.+. .+++++||||++++.|..++..|...+
T Consensus 310 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~ 389 (773)
T PRK13766 310 LREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG 389 (773)
T ss_pred HHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC
Confidence 000 0 0000111111 346799999999999999999996654
Q ss_pred hcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCC
Q 000129 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2114)
Q Consensus 758 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2114)
.....+ . ..+...-|+||++.+|..+++.|++|.++|||||+++++|+|+|
T Consensus 390 ~~~~~~---~--------------------------g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~ 440 (773)
T PRK13766 390 IKAVRF---V--------------------------GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIP 440 (773)
T ss_pred CceEEE---E--------------------------ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcc
Confidence 332111 0 00000016789999999999999999999999999999999999
Q ss_pred ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
++++||+ ||++. +...|+||+||+||.| .|.+++++..+.
T Consensus 441 ~~~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 441 SVDLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred cCCEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 9999998 77654 7788999999999965 488888877643
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=282.47 Aligned_cols=319 Identities=16% Similarity=0.136 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|..+++.++.+. |..+.||+|||++|.+|++.....+ ..+++++|++.||.|.++.+..++
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~G-----------~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALAG-----------LPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhcC-----------CeEEEEcCcHHHHHHHHHHHHHHH
Confidence 68899999999988775 9999999999999999999876543 479999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc----------------------CCCcccccccEEEE
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS----------------------GDRTYTQLVKLLII 629 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~----------------------~~~~~l~~v~liIi 629 (2114)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|.-+. ........+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999764332 245889999999875 5443321 11123456789999
Q ss_pred ecccccc-cC-C----------chhHHHHHHHHHHHHhhc----------------------------------------
Q 000129 630 DEIHLLH-DN-R----------GPVLESIVARTVRQIETT---------------------------------------- 657 (2114)
Q Consensus 630 DEaH~l~-d~-r----------g~~le~iv~rl~~~~~~~---------------------------------------- 657 (2114)
||+|.++ |+ + ......+...........
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999652 21 1 110000000000000000
Q ss_pred -----------------------------------------------------------------------------ccc
Q 000129 658 -----------------------------------------------------------------------------KEH 660 (2114)
Q Consensus 658 -----------------------------------------------------------------------------~~~ 660 (2114)
..-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 001
Q ss_pred ccEEEEccccCCh-HHHHHHHhccccCceEeecCCcccccce--eEEEeeccCchhHHHHHhhHHHHHHHHHH-hCCCeE
Q 000129 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLS--QQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQV 736 (2114)
Q Consensus 661 ~riv~lSATlpn~-~dva~~l~~~~~~~~~~f~~~~rpv~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~v 736 (2114)
.++.|||||++.. +++..+.+.+ . ...+..+|..-. ..++..+ ...+...+.+. +... ..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~----v-v~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLP----V-VRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCC----e-EEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 1678888887642 2344444332 1 223333443211 1111111 22233333322 2222 235789
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHH
Q 000129 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2114)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2114)
||||+|++.++.++..|...++. +..+||.+...++.. ..|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~i--i~~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAI--VAR 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHH--HHH
Confidence 99999999999999999876543 345699876555544 455
Q ss_pred hCCCceEEEechHhhhhcCCC---ceE-----EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+.+..+|+|||++++||+|+| ++. +||+ |+.+. |...|.||+|||||.| .+|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555567999999999999999 665 8998 66655 6778999999999987 78999999886
Q ss_pred Cc
Q 000129 889 SE 890 (2114)
Q Consensus 889 ~e 890 (2114)
.+
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 44
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=256.76 Aligned_cols=440 Identities=17% Similarity=0.190 Sum_probs=292.2
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCC
Q 000129 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~g 578 (2114)
-|++-|-..+..+.-++++|.||||||.......+.....+. ..+.+..|.|--|.+++.++.. .++
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVad---EMD 116 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVAD---EMD 116 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHH---Hhc
Confidence 366777788888888999999999999987777766655442 2489999999999999988876 456
Q ss_pred cEEEEEeCC-CccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 579 VKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 579 i~v~~l~Gd-~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
+..+.-.|- ..+++....++-+-+||.+ ++.|.......+..+++||+||||. +.....++.-+++.+...
T Consensus 117 v~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeahE-----RtlATDiLmGllk~v~~~ 188 (699)
T KOG0925|consen 117 VTLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAHE-----RTLATDILMGLLKEVVRN 188 (699)
T ss_pred cccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhhh-----hhHHHHHHHHHHHHHHhh
Confidence 667666663 3333333334445566666 6778777778899999999999995 334445555555555555
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
+++.++|.+|||+ ....+..|.+.. ++....+ ..|+.+ . +........+.+....+++.. .....+.+|
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~---Pll~vpg-~~PvEi--~---Yt~e~erDylEaairtV~qih-~~ee~GDil 257 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNA---PLLAVPG-THPVEI--F---YTPEPERDYLEAAIRTVLQIH-MCEEPGDIL 257 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCC---CeeecCC-CCceEE--E---ecCCCChhHHHHHHHHHHHHH-hccCCCCEE
Confidence 6899999999997 567777777643 3444444 445543 1 222222344444444444432 223378999
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
||..+..+.+..++.+...+-.-. .+..+..|..+| +.++..+++...
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~----------------------------~~~g~l~v~PLy----P~~qq~iFep~p 305 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLG----------------------------PQVGPLKVVPLY----PAQQQRIFEPAP 305 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhc----------------------------cccCCceEEecC----chhhccccCCCC
Confidence 999999999999988875431110 011222344445 333333333322
Q ss_pred ---CC--CceEEEechHhhhhcCCCceEEEEec----ceeccCCCCc----cccCCHHHHHHhhcccCCCCCCCceEEEE
Q 000129 818 ---DG--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2114)
Q Consensus 818 ---~g--~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2114)
+| ..+|+|+|++++..+.++++.+||+- ..+|||.-.. ..++|..+..||.|||||. .+|+|+.
T Consensus 306 ~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfr 382 (699)
T KOG0925|consen 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFR 382 (699)
T ss_pred cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEE
Confidence 12 36899999999999999999999984 5788887532 2678999999999999996 6899999
Q ss_pred EcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchh
Q 000129 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (2114)
Q Consensus 885 l~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (2114)
+++..- +.+-+..+ ...+.++.+|.+-+..-.-..+ .++..++ +.+
T Consensus 383 LYte~~---~~~em~~~-----typeilrsNL~s~VL~LKklgI-----------------~dlvhfd-----fmD---- 428 (699)
T KOG0925|consen 383 LYTEEA---FEKEMQPQ-----TYPEILRSNLSSTVLQLKKLGI-----------------DDLVHFD-----FMD---- 428 (699)
T ss_pred eecHHh---hhhcCCCC-----CcHHHHHHhhHHHHHHHHhcCc-----------------ccccCCc-----CCC----
Confidence 998532 32222221 1223344444332221110111 1111121 222
Q ss_pred hhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcC
Q 000129 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (2114)
Q Consensus 965 ~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~ 1044 (2114)
.+--+.+..|++.|.-.++++-| ..+|++|++||.|+++|..+++++.+...+|+ .|+|.|-+|-+- .+..+
T Consensus 429 -pPAPEtLMrALE~LnYLaaLdDd-----GnLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAMLsv-PncFv 500 (699)
T KOG0925|consen 429 -PPAPETLMRALEVLNYLAALDDD-----GNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAMLSV-PNCFV 500 (699)
T ss_pred -CCChHHHHHHHHHhhhhhhhCCC-----cccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhcccC-Ccccc
Confidence 22234567888888888888643 37899999999999999999999999888888 788887777544 45567
Q ss_pred Chh
Q 000129 1045 RQD 1047 (2114)
Q Consensus 1045 r~~ 1047 (2114)
|+.
T Consensus 501 Rp~ 503 (699)
T KOG0925|consen 501 RPT 503 (699)
T ss_pred CCC
Confidence 766
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=310.54 Aligned_cols=331 Identities=18% Similarity=0.178 Sum_probs=212.2
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1331 LYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1331 ~~~~l~~---gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
.+..+|. || .|+++|.++++.++.+++ +++.||||||||++++++.+.... .+. ++|||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHH
Confidence 3444443 68 699999999999999665 999999999999977666554322 233 8999999999999999
Q ss_pred HHHHHHhcCC--CCcEEEEEcCCcccchh-----hcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1408 RDWEIKFGQG--LGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1408 ~~~~~~f~~~--~g~~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+.++. ++.. .++++..++|+.+...+ .+. ..+|+|+||+++....... ...+++++||||||++..
T Consensus 140 ~~l~~-l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 140 EKIES-FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHH-HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccc
Confidence 99984 5443 35678888898775522 233 3599999999876654431 126799999999999875
Q ss_pred CC----------C--chHHH----HH---------------HHHHHHHhhcCCCce-EEEEcccCCChhHHHHHhcCCCC
Q 000129 1479 QG----------G--PVLEV----IV---------------SRMRYIASQVENKIR-IVALSTSLANAKDLGEWIGATSH 1526 (2114)
Q Consensus 1479 ~~----------g--~~le~----i~---------------srl~~i~~~~~~~~r-iV~lSATl~n~~dla~wl~~~~~ 1526 (2114)
++ | +.+.. ++ .++......++...+ ++.+|||++...+...++....
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l- 293 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL- 293 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-
Confidence 31 1 11111 11 011111112334445 5779999976555555553221
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHH---HHHHHHHHHhhccCCc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV---RLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a---~~la~~L~~~~~~~~~ 1603 (2114)
.|..... ++ .+....+.+....... +.....+... .+.++||||+|++.+ +.++..|..
T Consensus 294 -~f~v~~~-~~-~lr~i~~~yi~~~~~~------k~~L~~ll~~--~g~~gIVF~~t~~~~e~ae~la~~L~~------- 355 (1638)
T PRK14701 294 -GFEVGSG-RS-ALRNIVDVYLNPEKII------KEHVRELLKK--LGKGGLIFVPIDEGAEKAEEIEKYLLE------- 355 (1638)
T ss_pred -EEEecCC-CC-CCCCcEEEEEECCHHH------HHHHHHHHHh--CCCCeEEEEeccccchHHHHHHHHHHH-------
Confidence 1222211 11 1111111111111111 0112223333 256899999998864 666655522
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec----CccccccCCCC-c
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS----SSMCWGVPLTA-H 1678 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT----~~la~Gvdip~-~ 1678 (2114)
.+..+..+||+ |..+++.|++|+++||||| ++++||||+|+ +
T Consensus 356 ----------------------------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~V 402 (1638)
T PRK14701 356 ----------------------------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERI 402 (1638)
T ss_pred ----------------------------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCcc
Confidence 24567889985 8899999999999999999 58999999998 9
Q ss_pred EEEEEeeeEecCCcCcCCCC---CHhHH-------------HHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1679 LVVVMGTQYYDGQENAHTDY---PVTDL-------------LQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~---s~~~~-------------lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
++|| |+++|. ++..| +++.|||||.| ..+.++...........++++
T Consensus 403 ryvi----------~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 403 RFAV----------FYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred CEEE----------EeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHh
Confidence 9999 666665 54433 45569999984 456565444444455555555
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=253.38 Aligned_cols=330 Identities=21% Similarity=0.298 Sum_probs=237.6
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
.+++.| ..++++|.|..+|...+.+.+ +++..|||.||++||.||.|-. +| -+++|+|..+|+.
T Consensus 85 ilk~~f-~lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a-------dg-------~alvi~plislme 148 (695)
T KOG0353|consen 85 ILKEQF-HLEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA-------DG-------FALVICPLISLME 148 (695)
T ss_pred HHHHHh-hHHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc-------CC-------ceEeechhHHHHH
Confidence 344555 367899999999999988866 8888999999999999998864 12 5899999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccChhh---------hccceEEEcCHhHH---HHHHhccCCCcccccccEEEEecc
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEI 632 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPek~---d~l~r~~~~~~~l~~v~liIiDEa 632 (2114)
++.-.++.+ ||....+....+.+... .....+|+.|||++ ..+..+.........+.+|-|||+
T Consensus 149 dqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 988877664 77776666554433221 13567999999997 222222211123456789999999
Q ss_pred ccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEeecCCcccccceeEEEee
Q 000129 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (2114)
Q Consensus 633 H~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (2114)
|+... +++|.+..+ .-+ ....++..++||+||..| ..|+...|... ..|.|...|....+...+..-
T Consensus 225 hccsqwghdfr~dy~~l-~il----krqf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GIL----KRQFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQK 296 (695)
T ss_pred eehhhhCcccCcchHHH-HHH----HHhCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeC
Confidence 99854 566766532 212 223578899999999876 56777777653 356777776555554433221
Q ss_pred ccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcc
Q 000129 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2114)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (2114)
+. +...-. +.+...+.....+...||||-|++.|++++..|...++..
T Consensus 297 p~-n~dd~~----edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a--------------------------- 344 (695)
T KOG0353|consen 297 PG-NEDDCI----EDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA--------------------------- 344 (695)
T ss_pred CC-ChHHHH----HHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc---------------------------
Confidence 11 111111 1111222222336678999999999999999999876543
Q ss_pred hhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHH-
Q 000129 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ- 866 (2114)
Q Consensus 788 ~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q- 866 (2114)
+.+|+.|.+++|.-+-+.+..|+|+|+|||-.+++|||-|++++||+ .+.++ |+..|.|
T Consensus 345 ----------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyqa 404 (695)
T KOG0353|consen 345 ----------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQA 404 (695)
T ss_pred ----------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHHH
Confidence 34599999999999999999999999999999999999999999999 44444 7778888
Q ss_pred ------------------------------------------hhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 867 ------------------------------------------MLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 867 ------------------------------------------r~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|||||.+ .+..||+++.-.+.-...+
T Consensus 405 sarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~difk~ss 474 (695)
T KOG0353|consen 405 SARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADIFKISS 474 (695)
T ss_pred HHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHHHhHHH
Confidence 789999976 6789999988666544433
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=283.28 Aligned_cols=324 Identities=19% Similarity=0.203 Sum_probs=213.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ .|+++|..+...+..+ .|+.+.||+|||++|.+|++.....+ ..+.+++|++.||.|.++.+.
T Consensus 76 g~-~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred CC-CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 44 7899999998866544 39999999999999999998665543 369999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCc-cC-hhhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEecccccc-c-CCch-
Q 000129 572 NRLQMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP- 641 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~-~~-~~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~- 641 (2114)
.++..+|++|+.++|+.+ .. ++....++|+++||+++ |.+..+. .....++.+.++||||||.++ | .+-|
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999887 32 23345799999999996 6555432 122456788999999999763 3 1222
Q ss_pred ----------hHHHHHHHHHHHHhhc-----cccc---------------------------------------------
Q 000129 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (2114)
Q Consensus 642 ----------~le~iv~rl~~~~~~~-----~~~~--------------------------------------------- 661 (2114)
.+-.+..++...+... ....
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1111111221111100 0011
Q ss_pred ----------------------------------------------------------------cEEEEccccCChHHHH
Q 000129 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (2114)
Q Consensus 662 ----------------------------------------------------------------riv~lSATlpn~~dva 677 (2114)
++.|||.|.... -.
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~--~~ 378 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTE--EK 378 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHH--HH
Confidence 223333332110 01
Q ss_pred HHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHH
Q 000129 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (2114)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2114)
+|.... .-.+ ..-+..+|+.....-..+.. ....+..++. ..+.. +..+.|+||||+|++.++.++..|...
T Consensus 379 e~~~~Y-~l~v-~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~----~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVY-NMEV-VQIPTNRPIIRIDYPDKVFV-TLDEKYKAVI----EEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHh-CCcE-EECCCCCCcccccCCCeEEc-CHHHHHHHHH----HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 111111 0011 11122233221110000000 1112222222 22222 234789999999999999999999876
Q ss_pred hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
++. +..+||.+...++..+...++.| +|+|||++++||+|+
T Consensus 452 gi~-------------------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI 492 (790)
T PRK09200 452 GIP-------------------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDI 492 (790)
T ss_pred CCC-------------------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCC
Confidence 543 34569999999998888888777 799999999999999
Q ss_pred ---CceE-----EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 837 ---PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 837 ---P~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|++. +||+ |+.+. |...|.||+|||||.| .+|.++.+++..+
T Consensus 493 ~l~~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 493 KLGEGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CcccccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 7998 9998 66555 6788999999999987 7899999887644
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=248.75 Aligned_cols=300 Identities=22% Similarity=0.289 Sum_probs=216.6
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
|+.++.+- .||++|+.+|.+|||.++.+-+ ++..|..|.|||.+|.++-|+++.... +...+++++.||+
T Consensus 51 pellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~--------g~vsvlvmchtre 121 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVD--------GQVSVLVMCHTRE 121 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCC--------CeEEEEEEeccHH
Confidence 55556555 7999999999999999999877 999999999999999999999986531 3568999999999
Q ss_pred HHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 562 LVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
||-|+.+++.++.+.+ +++|..+.|+....+.. .+-++|+|+||+++..+.|... ..+++++.+|+|||+.+.+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHH
Confidence 9999988876655433 79999999998876542 3467999999999988888765 6788999999999998754
Q ss_pred ---CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCccc---ccceeEEEeeccCc
Q 000129 638 ---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVKK 711 (2114)
Q Consensus 638 ---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~~ 711 (2114)
.|+.+-| | .+.++...|++.+|||+++ ++....+.....++-.|...... -.++++|+..++..
T Consensus 200 ~lDMrRDvQE-i-------fr~tp~~KQvmmfsatlsk--eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e 269 (387)
T KOG0329|consen 200 QLDMRRDVQE-I-------FRMTPHEKQVMMFSATLSK--EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE 269 (387)
T ss_pred HHHHHHHHHH-H-------hhcCcccceeeeeeeecch--hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh
Confidence 3433322 2 2346788899999999984 34333332223333232222211 23445555444333
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
...++ ++ +++...-+|++||+.|....
T Consensus 270 KNrkl-------~d-LLd~LeFNQVvIFvKsv~Rl--------------------------------------------- 296 (387)
T KOG0329|consen 270 KNRKL-------ND-LLDVLEFNQVVIFVKSVQRL--------------------------------------------- 296 (387)
T ss_pred hhhhh-------hh-hhhhhhhcceeEeeehhhhh---------------------------------------------
Confidence 22222 21 23344467999999765430
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
+ | ..+ +|||+.+.||+|+..++.+||++.|-+ ...|+||+|||
T Consensus 297 -------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~----------~DtYlHrv~rA 339 (387)
T KOG0329|consen 297 -------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPED----------SDTYLHRVARA 339 (387)
T ss_pred -------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCC----------chHHHHHhhhh
Confidence 0 2 123 899999999999999999999554444 45699999999
Q ss_pred CCCCCCCceEEEEEcCCCcHHHHH
Q 000129 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
||-| +.|.+|.+.+..+....+
T Consensus 340 grfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 340 GRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred hccc--cccceeehhcchhhHHHh
Confidence 9966 889999998876654443
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=272.83 Aligned_cols=382 Identities=23% Similarity=0.348 Sum_probs=249.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|..+|.+.+..+ ..++.++|+|||.+|||.+-..+|=.++.. ...+ -+||++|+++|+.|+......+|....-.
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSD--VVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhh-cCCC--EEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 5888999998877 446679999999999999887888777777 5566 89999999999999999999899543233
Q ss_pred EEEEEcCCcccchhh-ccCCcEEEEChhhHHHHHhh-hcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l~~l~r~-~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
+...+.|+...+.+. .-+++|+|+-|+.+..++-. .....+..+++++|+||+|.+|.. .|..+|.++-.
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------- 659 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------- 659 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-------
Confidence 344455655555332 23679999999999987765 223457899999999999999974 56666555531
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCC------CceeecCC--------------CCCccCc-------------E---
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATS------HGLFNFPP--------------GVRPVPL-------------E--- 1541 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~------~~~~~f~~--------------~~rpv~l-------------~--- 1541 (2114)
.++.++++|||++|+..+..|+.... .....+.. +...+++ .
T Consensus 660 --i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred --cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 36889999999999999999997210 01111110 0000000 0
Q ss_pred -------EEEeccccc------------------ch-H--------------------HHHHh--------------cCH
Q 000129 1542 -------IHIQGVDIT------------------NF-E--------------------ARMQA--------------MTK 1561 (2114)
Q Consensus 1542 -------~~~~~~~~~------------------~~-~--------------------~~~~~--------------~~~ 1561 (2114)
..+..+... .+ . ..+.. ..+
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 000000000 00 0 00000 000
Q ss_pred HH---------------HHHHHH---Hh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCc-c----------------
Q 000129 1562 PT---------------FTAIVQ---HA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD-Q---------------- 1604 (2114)
Q Consensus 1562 ~~---------------~~~i~~---~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~-~---------------- 1604 (2114)
++ ...++. .+ ...-|+|+|-..|..|+.+|..+...+..... .
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00 000000 00 23458999999998888777654322111000 0
Q ss_pred -----------------cc-------------cccCC----CcccchhhHhhh--hHHHHHHHhccceEeecCCCCHHHH
Q 000129 1605 -----------------KS-------------AFLLW----PAEEVEPFIDNI--QEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2114)
Q Consensus 1605 -----------------~~-------------~~l~~----~~~~l~~~~~~i--~d~~L~~~l~~gV~~~H~~ls~~dR 1648 (2114)
.. .|+.. +..+++.....+ .+..+...+-.|||+||+||+...|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 00 00000 000010000011 2455677888899999999999999
Q ss_pred HHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
..|+-+|+.|...||+||.+++-|||.|+.+||..|.. ...++..|.||+|||||.|||..|.++.|--+.
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~ 1048 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR 1048 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCcH
Confidence 99999999999999999999999999999999985432 456788999999999999999999999886553
Q ss_pred cHHHHHHHH-----HhccCCCCc
Q 000129 1729 RKEYYKKFL-----RLTQNPNYY 1746 (2114)
Q Consensus 1729 ~~~~~~~~l-----Rl~~nP~~y 1746 (2114)
. ...+++ .+..+|+|-
T Consensus 1049 ~--kv~rLlts~L~diqG~~p~T 1069 (1330)
T KOG0949|consen 1049 Q--KVQRLLTSLLPDIQGAYPYT 1069 (1330)
T ss_pred H--HHHHHHHHhhhcccCCCcch
Confidence 2 333444 455666654
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=301.81 Aligned_cols=303 Identities=18% Similarity=0.185 Sum_probs=197.9
Q ss_pred hHHHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1330 PLYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1330 ~~~~~l~~---gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..++++|. |+ .|+++|.++++.++.+. +++++||||||||..+ +++...+.. .+. +++||+||++||.|+
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~-dv~i~ApTGsGKT~f~-l~~~~~l~~--~g~--~alIL~PTreLa~Qi 139 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGE-SFAIIAPTGVGKTTFG-LVMSLYLAK--KGK--KSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCC-cEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEEeccHHHHHHH
Confidence 34556664 45 89999999999999854 5999999999999744 454444433 233 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCccc---c----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAM---D----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~---~----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
++.++ .++...++.+..+.|+... . ...+. ..+|+|+||+++...+.. .....++++|+||||.+.
T Consensus 140 ~~~l~-~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 140 VEKLE-KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHH-HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhh
Confidence 99999 5666667788777765432 1 12222 469999999998765542 234569999999999887
Q ss_pred CC----------CCc---hHHHHHHHHH-------------HHHhhc----CCCceEEEEcccCCCh-hH---HHHHhcC
Q 000129 1478 GQ----------GGP---VLEVIVSRMR-------------YIASQV----ENKIRIVALSTSLANA-KD---LGEWIGA 1523 (2114)
Q Consensus 1478 ~~----------~g~---~le~i~srl~-------------~i~~~~----~~~~riV~lSATl~n~-~d---la~wl~~ 1523 (2114)
++ .|. .++.++..++ .+.... +...|++++|||.+.. .. +.+.++
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~- 293 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG- 293 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce-
Confidence 52 122 2222322221 111111 1267899999999642 11 122222
Q ss_pred CCCceeecCCCCCc-cCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHH---HHHHHHHHHHhhc
Q 000129 1524 TSHGLFNFPPGVRP-VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSS 1599 (2114)
Q Consensus 1524 ~~~~~~~f~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~---a~~la~~L~~~~~ 1599 (2114)
+........ -.+...+.... . . ......+... -+.++||||++++. |..++..|..
T Consensus 294 -----~~v~~~~~~~rnI~~~yi~~~--~---k-----~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~--- 353 (1176)
T PRK09401 294 -----FEVGSPVFYLRNIVDSYIVDE--D---S-----VEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYLED--- 353 (1176)
T ss_pred -----EEecCcccccCCceEEEEEcc--c---H-----HHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHHHH---
Confidence 111111000 01111111000 0 0 1112223333 24689999999877 8777766532
Q ss_pred cCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCC
Q 000129 1600 MDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPL 1675 (2114)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdi 1675 (2114)
.+..+..+||+| ++ .++.|++|+++|||| |++++||||+
T Consensus 354 --------------------------------~gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDi 396 (1176)
T PRK09401 354 --------------------------------LGINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDL 396 (1176)
T ss_pred --------------------------------CCCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCC
Confidence 245688999999 22 349999999999999 6899999999
Q ss_pred CC-cEEEEEeeeEecCCcCcCCCC------CHhHHHHhHcccCC
Q 000129 1676 TA-HLVVVMGTQYYDGQENAHTDY------PVTDLLQMMGHASR 1712 (2114)
Q Consensus 1676 p~-~~vVI~gt~~yd~~~~~~~~~------s~~~~lQr~GRAGR 1712 (2114)
|. +++|| ++++|. ....+.||+||+-+
T Consensus 397 P~~IryVI----------~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 397 PERIRYAI----------FYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CcceeEEE----------EeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 89999 777776 45678999999864
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=277.69 Aligned_cols=322 Identities=17% Similarity=0.193 Sum_probs=204.1
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
++|+|.+++..+..... .++.++||+|||++|.+|++.....+ ..++|++|+++||.|.++.+..++.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 34444445544433333 69999999999999999987665543 2599999999999999999999999
Q ss_pred cCCcEEEEEeCCCc---cC---hhhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEecccccc-cC-Cchh
Q 000129 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-DN-RGPV 642 (2114)
Q Consensus 576 ~~gi~v~~l~Gd~~---~~---~~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d~-rg~~ 642 (2114)
.+|++|+..+++.. .. .+....++|+++||+++ |.+.... .....++.+.++||||||.++ |+ |-|.
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999998877522 22 22335899999999997 5443321 122356789999999999873 21 2111
Q ss_pred -----------HHHHHHHHHHHHhhc-----cccc---------------------------------------------
Q 000129 643 -----------LESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (2114)
Q Consensus 643 -----------le~iv~rl~~~~~~~-----~~~~--------------------------------------------- 661 (2114)
+-....++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 111111111111000 0011
Q ss_pred ----------------------------------------------------------------cEEEEccccCChHHHH
Q 000129 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (2114)
Q Consensus 662 ----------------------------------------------------------------riv~lSATlpn~~dva 677 (2114)
++.|||.|.. ..-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~--~~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK--VAEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh--hHHH
Confidence 3334444421 1112
Q ss_pred HHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHH
Q 000129 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (2114)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2114)
+|.... .- -+..-+..+|+.....--.+.. ....+..++. +.+.+ +..+.|+||||+|++.++.++..|...
T Consensus 375 Ef~~iY-~l-~v~~IPt~kp~~r~d~~d~i~~-~~~~K~~ai~----~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETY-SL-SVVKIPTNKPIIRIDYPDKIYA-TLPEKLMATL----EDVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHh-CC-CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHH----HHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 222211 01 1122233333322110000000 1112222222 22222 344779999999999999999999876
Q ss_pred hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
++. ...+||.+...+|..+...++.| +|+|||++++||+|+
T Consensus 448 gi~-------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI 488 (762)
T TIGR03714 448 GIP-------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDI 488 (762)
T ss_pred CCC-------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCC
Confidence 543 34559999999998888877777 799999999999999
Q ss_pred C---------ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 837 P---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 837 P---------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
| ++.||++ |++++ ...+ .||+|||||.| .+|.++.+++..+
T Consensus 489 ~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 489 KLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred CCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 9 9999998 77775 3344 99999999987 7899999887654
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=279.28 Aligned_cols=317 Identities=13% Similarity=0.214 Sum_probs=205.6
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1340 KHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
..++|+|.+++..++..+ .+.+|++|||+|||++++.++. .+ .+ ++|||||+..|+.|+.+++. +|...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----~k--~tLILvps~~Lv~QW~~ef~-~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----KK--SCLVLCTSAVSVEQWKQQFK-MWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----CC--CEEEEeCcHHHHHHHHHHHH-HhcCC
Confidence 368999999999998644 4789999999999999976554 22 23 79999999999999999998 45443
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcc----cccc--cceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ----RKYV--QQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~----~~~l--~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
....+..++|+.... ......|+|+|++.+....++... ...+ ...++||+||||++.. +.+..++
T Consensus 325 ~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il--- 396 (732)
T TIGR00603 325 DDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVL--- 396 (732)
T ss_pred CCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHH---
Confidence 345778888864332 123468999999876433222100 0112 3578999999999852 2222222
Q ss_pred HHHHhhcCCCceEEEEcccCCChh----HHHHHhcCCCCceeecCC-----CCCccCcEEE--EecccccchH-------
Q 000129 1492 RYIASQVENKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPP-----GVRPVPLEIH--IQGVDITNFE------- 1553 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~~----dla~wl~~~~~~~~~f~~-----~~rpv~l~~~--~~~~~~~~~~------- 1553 (2114)
..+. ....+|||||+...+ ++...+|-. +|.... ...-.+.+.. ........+.
T Consensus 397 ----~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~ 468 (732)
T TIGR00603 397 ----TIVQ-AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS 468 (732)
T ss_pred ----HhcC-cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc
Confidence 2222 345699999996433 233333322 222110 0011111111 1111111111
Q ss_pred ---HHHHhcCHHHHHH---HHHH-hcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHH
Q 000129 1554 ---ARMQAMTKPTFTA---IVQH-AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2114)
Q Consensus 1554 ---~~~~~~~~~~~~~---i~~~-l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2114)
.....++...+.. +... -..+.++||||.+...+..++..|
T Consensus 469 ~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------------- 516 (732)
T TIGR00603 469 RKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------------- 516 (732)
T ss_pred hhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------------
Confidence 1112233333332 2222 136778999999988876666433
Q ss_pred HHHHHhccceEeecCCCCHHHHHHHHHHHhcC-CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC-CHhHHH
Q 000129 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY-PVTDLL 1704 (2114)
Q Consensus 1627 ~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g-~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~-s~~~~l 1704 (2114)
++.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|++.+|| +...+. |...|+
T Consensus 517 --------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI----------~~s~~~gS~~q~i 578 (732)
T TIGR00603 517 --------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLI----------QISSHYGSRRQEA 578 (732)
T ss_pred --------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEE----------EeCCCCCCHHHHH
Confidence 356789999999999999999875 889999999999999999999999 555553 899999
Q ss_pred HhHcccCCCCCCCc-----eEEEEEeecCcHH
Q 000129 1705 QMMGHASRPLLDNS-----GKCVILCHAPRKE 1731 (2114)
Q Consensus 1705 Qr~GRAGR~~~~~~-----G~~iil~~~~~~~ 1731 (2114)
||+||++|++.++. +..|.+++....+
T Consensus 579 QRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 579 QRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999854332 3347777665443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=264.52 Aligned_cols=433 Identities=18% Similarity=0.158 Sum_probs=284.5
Q ss_pred HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000129 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425 (2114)
Q Consensus 1349 ~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l 1425 (2114)
+..+| +.+..|||||.||||||+.....++..=-... ..| .+-+..|+|-.|..++++....++. +|..|+..
T Consensus 264 IMEaI-n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 264 IMEAI-NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHHh-hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 34444 45777999999999999887666665422211 123 6778999999999999999888876 46666654
Q ss_pred cCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC-----
Q 000129 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN----- 1500 (2114)
Q Consensus 1426 ~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~----- 1500 (2114)
.. .+...-..+.|.++|.|.| +|.......+..++.||+||||.-. -....+--+++|+-.+...+..
T Consensus 340 IR---fd~ti~e~T~IkFMTDGVL---LrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 340 IR---FDGTIGEDTSIKFMTDGVL---LREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred EE---eccccCCCceeEEecchHH---HHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 32 1222234568999999984 4555557789999999999999432 1233444467777666555444
Q ss_pred -CceEEEEcccCCChhHHHHHhcCCCCceeecCC-----CCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCC
Q 000129 1501 -KIRIVALSTSLANAKDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (2114)
Q Consensus 1501 -~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 1574 (2114)
++++|.||||+ ...||.+ . ..+|...| ..|..|+.+|+..-...+|..... .....|.+. .+.
T Consensus 413 kpLKLIIMSATL-RVsDFte---n--k~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf----rKtc~IH~k-LP~ 481 (1172)
T KOG0926|consen 413 KPLKLIIMSATL-RVSDFTE---N--KRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF----RKTCKIHKK-LPP 481 (1172)
T ss_pred CceeEEEEeeeE-Eeccccc---C--ceecCCCCceeeeecccCceEEEeccCCCchHHHHHH----HHHHHHhhc-CCC
Confidence 89999999999 4444432 1 11232222 447778888887666555543321 112234444 467
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCc-----------------cccc-----ccCCCcccchhhHh-----------
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGD-----------------QKSA-----FLLWPAEEVEPFID----------- 1621 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~-----------------~~~~-----~l~~~~~~l~~~~~----------- 1621 (2114)
+.+|||+....++..++..|.......-. .... -.....+.+..-.+
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 78999999999999999999876431100 0000 00000011100000
Q ss_pred -----------------------hhhHHHHHHHhc--------cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 000129 1622 -----------------------NIQEEMLKATLR--------HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2114)
Q Consensus 1622 -----------------------~i~d~~L~~~l~--------~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2114)
...+..+....+ .-|..+++-|+.+++.+|++.-..|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 001111111111 1278899999999999999999999999999999999
Q ss_pred cccCCCCcEEEEEe----eeEecCCcCc---C-CCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH-HHHHHH----
Q 000129 1671 WGVPLTAHLVVVMG----TQYYDGQENA---H-TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFL---- 1737 (2114)
Q Consensus 1671 ~Gvdip~~~vVI~g----t~~yd~~~~~---~-~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~-~~~~~l---- 1737 (2114)
.+++||++.+||-+ +..||...+. . ..+|.++.-||+|||||. ..|+||.++++.-.+ -|..|-
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt---gpGHcYRLYSSAVf~~~Fe~fS~PEI 718 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT---GPGHCYRLYSSAVFSNDFEEFSLPEI 718 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC---CCCceeehhhhHHhhcchhhhccHHH
Confidence 99999999999932 3467665432 1 246788899999999995 599999999875432 222222
Q ss_pred ------------HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHH
Q 000129 1738 ------------RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIE 1805 (2114)
Q Consensus 1738 ------------Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~ 1805 (2114)
+.+.-++.-++..-+..+ ...++.+...|...|+++.++ ..|.+|..||.|+++|+-.+
T Consensus 719 lk~Pve~lvLqMKsMnI~kVvnFPFPtpPd-----~~~L~~Aer~L~~LgALd~~g----~lT~lGk~mS~FPlsPrfsK 789 (1172)
T KOG0926|consen 719 LKKPVESLVLQMKSMNIDKVVNFPFPTPPD-----RSALEKAERRLKALGALDSNG----GLTKLGKAMSLFPLSPRFSK 789 (1172)
T ss_pred hhCcHHHHHHHHHhcCccceecCCCCCCcc-----HHHHHHHHHHHHHhccccccC----CcccccchhcccccChhHHH
Confidence 222222222222223322 256788999999999997643 68999999999999999999
Q ss_pred HHHhhcCCCC
Q 000129 1806 RFSSSLTPKT 1815 (2114)
Q Consensus 1806 ~f~~sl~~~~ 1815 (2114)
++..+-..++
T Consensus 790 mL~~~~Q~~~ 799 (1172)
T KOG0926|consen 790 MLATSDQHNL 799 (1172)
T ss_pred HHHHHHhhcc
Confidence 9987554443
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=239.72 Aligned_cols=296 Identities=19% Similarity=0.275 Sum_probs=217.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|+.+.++++-. ||.+|+.+|.+||+...-+-+ ++..|..|.|||.+|.++-++.+... .|.+.+++++.||+||.|
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv--~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPV--DGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCC--CCeEEEEEEeccHHHHHH
Confidence 44566777765 899999999999999888666 99999999999999999999888763 455689999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccc--hhhccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+.+++. +|+++ .++++.++.|+.... ...+.++ +|+|+||+++..+.|. ....++++..+|+|||+.+.++-
T Consensus 126 i~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~l- 201 (387)
T KOG0329|consen 126 ISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQL- 201 (387)
T ss_pred HHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHHH-
Confidence 999988 78877 678999999987653 4455555 9999999999999997 45679999999999999775431
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEe--------cccccch
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ--------GVDITNF 1552 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~--------~~~~~~~ 1552 (2114)
.....+..+.+.++...|+..+|||+++. +-+..-+-.. |+++++. +......
T Consensus 202 ----DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQd--------------PmEi~vDdE~KLtLHGLqQ~Yv 263 (387)
T KOG0329|consen 202 ----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQD--------------PMEIFVDDEAKLTLHGLQQYYV 263 (387)
T ss_pred ----HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcC--------------chhhhccchhhhhhhhHHHHHH
Confidence 13344566667778899999999999763 2222222122 2222222 1111000
Q ss_pred HHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000129 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2114)
Q Consensus 1553 ~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2114)
.-.-...++..+. ++.. .+-.+++||+.|....
T Consensus 264 kLke~eKNrkl~d-LLd~-LeFNQVvIFvKsv~Rl--------------------------------------------- 296 (387)
T KOG0329|consen 264 KLKENEKNRKLND-LLDV-LEFNQVVIFVKSVQRL--------------------------------------------- 296 (387)
T ss_pred hhhhhhhhhhhhh-hhhh-hhhcceeEeeehhhhh---------------------------------------------
Confidence 0000111112222 2222 3456888888765210
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
+ | ..+ +|||+.+.||+|+..++.|+ +|+.|-+...|+||+|||||
T Consensus 297 -----------~----------f---~kr-~vat~lfgrgmdiervNi~~----------NYdmp~~~DtYlHrv~rAgr 341 (387)
T KOG0329|consen 297 -----------S----------F---QKR-LVATDLFGRGMDIERVNIVF----------NYDMPEDSDTYLHRVARAGR 341 (387)
T ss_pred -----------h----------h---hhh-hHHhhhhccccCcccceeee----------ccCCCCCchHHHHHhhhhhc
Confidence 0 2 123 89999999999999999999 99999999999999999999
Q ss_pred CCCCCceEEEEEeecCcHH
Q 000129 1713 PLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1713 ~~~~~~G~~iil~~~~~~~ 1731 (2114)
- +..|.++.|....+..
T Consensus 342 f--Gtkglaitfvs~e~da 358 (387)
T KOG0329|consen 342 F--GTKGLAITFVSDENDA 358 (387)
T ss_pred c--ccccceeehhcchhhH
Confidence 6 7999999999876543
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=261.67 Aligned_cols=315 Identities=23% Similarity=0.345 Sum_probs=230.5
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+|.-|.+++..|... .-|=++.|.-|||||+++.++++..+.. +. ++..++||.-||.|.|..+.+.|.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHHHHHHHHHHHHHhh
Confidence 6999999999998742 2377999999999999999999988876 44 999999999999999999997776
Q ss_pred CCCCcEEEEEcCCcccch-----hhccC--CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~-----~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
. +|++|+.++|...... ..+.+ .+|+|+|-. ++. ....+++++++|+||=|+.+ +.
T Consensus 337 ~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFG---------V~ 399 (677)
T COG1200 337 P-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFG---------VH 399 (677)
T ss_pred h-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEecccccc---------HH
Confidence 6 4899999999876542 23334 399999954 222 34578999999999999987 55
Q ss_pred HHHHHHHhhcCC-CceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHH
Q 000129 1489 SRMRYIASQVEN-KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (2114)
Q Consensus 1489 srl~~i~~~~~~-~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1566 (2114)
.|.+.... +. .+.++.||||+-. .-.+..|=...-+.+-..++...|+.- ...... . ....+..
T Consensus 400 QR~~L~~K--G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T--~~i~~~--~--------~~~v~e~ 465 (677)
T COG1200 400 QRLALREK--GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITT--VVIPHE--R--------RPEVYER 465 (677)
T ss_pred HHHHHHHh--CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEE--EEeccc--c--------HHHHHHH
Confidence 55544322 44 5789999999733 223334433443444455555555432 222111 1 1234556
Q ss_pred HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH-HhccceEeecCCCCH
Q 000129 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1567 i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gV~~~H~~ls~ 1645 (2114)
+...+..+.++.+.||-..+.+.+-..- ..... ..|.. .....|+.+||.|+.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~---------------------a~~~~-----~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQA---------------------AEELY-----EELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhh---------------------HHHHH-----HHHHHHcccceeEEEecCCCh
Confidence 6666688999999999887665322000 00000 12222 234569999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
.++..|++.|++|+++|||||.+.+.|||+|+.++.| ... .-+-.+.+-|-.||+||. +..+.|+++
T Consensus 520 ~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~A----------ERFGLaQLHQLRGRVGRG--~~qSyC~Ll 587 (677)
T COG1200 520 AEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENA----------ERFGLAQLHQLRGRVGRG--DLQSYCVLL 587 (677)
T ss_pred HHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEech----------hhhhHHHHHHhccccCCC--CcceEEEEE
Confidence 9999999999999999999999999999999887765 211 224578999999999997 789999999
Q ss_pred eecCc
Q 000129 1725 CHAPR 1729 (2114)
Q Consensus 1725 ~~~~~ 1729 (2114)
+.++.
T Consensus 588 ~~~~~ 592 (677)
T COG1200 588 YKPPL 592 (677)
T ss_pred eCCCC
Confidence 99887
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=245.67 Aligned_cols=333 Identities=19% Similarity=0.303 Sum_probs=241.4
Q ss_pred CCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1320 QPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1320 ~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.-+|.+.-....+.+.|. ...|+|.|..+++..+.+.+ +++..|||.||++||.+|.+- .+| -+++|+|.
T Consensus 74 d~fpws~e~~~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~------adg--~alvi~pl 143 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALC------ADG--FALVICPL 143 (695)
T ss_pred CCCCCchHHHHHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHh------cCC--ceEeechh
Confidence 345555555567777776 78999999999999998776 999999999999999999982 355 79999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-hhh----c----cCCcEEEEChhhHHH---HHhhhcccccccceeE
Q 000129 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKL----L----EKGQIIISTPEKWDA---LSRRWKQRKYVQQVSL 1467 (2114)
Q Consensus 1400 r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-~~~----l----~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v~l 1467 (2114)
.+|+..+.-.++ .+ |+....+....+.. .+. + ..-.+|+.|||++.. ++.+.........+.+
T Consensus 144 islmedqil~lk-ql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLK-QL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHH-Hh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 999998887777 33 66666666555443 111 1 122799999999853 3333333335667899
Q ss_pred EEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHHHHhcCCCCceeecCCCCCccCcEEEEe
Q 000129 1468 FIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545 (2114)
Q Consensus 1468 iIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~ 1545 (2114)
|-+||+|+...|+ +.+..-.+.+.-+.+|+ +...+|+++||..| ..|..+.++... .|.|...+....+...+.
T Consensus 219 iaidevhccsqwg-hdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~yev~ 294 (695)
T KOG0353|consen 219 IAIDEVHCCSQWG-HDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYEVR 294 (695)
T ss_pred EeecceeehhhhC-cccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeEee
Confidence 9999999987543 33333333344344443 57899999999877 346667776654 344444443334444433
Q ss_pred cccccchHHHHHhcCHHHHHHHHHHh---cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhh
Q 000129 1546 GVDITNFEARMQAMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2114)
Q Consensus 1546 ~~~~~~~~~~~~~~~~~~~~~i~~~l---~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2114)
.-+.. .. .....|...+ -.+...||||-|++.|+.++..|..
T Consensus 295 qkp~n--~d-------d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn-------------------------- 339 (695)
T KOG0353|consen 295 QKPGN--ED-------DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKN-------------------------- 339 (695)
T ss_pred eCCCC--hH-------HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHh--------------------------
Confidence 22211 11 1122222222 2456789999999999999977632
Q ss_pred hhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhH
Q 000129 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTD 1702 (2114)
Q Consensus 1623 i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~ 1702 (2114)
.+...+.+|+.|.+++|.-+-+.+..|+|+|+|||-.+.+|+|-|++++|| |...|.|+..
T Consensus 340 ---------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi----------hhsl~ksien 400 (695)
T KOG0353|consen 340 ---------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI----------HHSLPKSIEN 400 (695)
T ss_pred ---------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE----------ecccchhHHH
Confidence 233467899999999999999999999999999999999999999999999 8899999999
Q ss_pred HHH-------------------------------------------hHcccCCCCCCCceEEEEEeec
Q 000129 1703 LLQ-------------------------------------------MMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1703 ~lQ-------------------------------------------r~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
|.| -.|||||. |.+..|++++.-
T Consensus 401 yyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd--~~~a~cilyy~~ 466 (695)
T KOG0353|consen 401 YYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRD--DMKADCILYYGF 466 (695)
T ss_pred HHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccC--CCcccEEEEech
Confidence 999 78999997 778899987754
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=270.11 Aligned_cols=322 Identities=14% Similarity=0.098 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|..+++.++.++ |..+.||+|||++|.+|++..... +. .+++++||++||.|.++.+.. +...+|+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~---G~--~v~VvTptreLA~qdae~~~~-l~~~lGl 173 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA---GL--PVHVITVNDYLAERDAELMRP-LYEALGL 173 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc---CC--eEEEEcCcHHHHHHHHHHHHH-HHhhcCC
Confidence 68899999999999866 899999999999999999987654 33 899999999999999999884 5556799
Q ss_pred EEEEEcCCcccch-hhccCCcEEEEChhhH-HHHHhhhcc-----------------------cccccceeEEEeccccc
Q 000129 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWKQ-----------------------RKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~~-----------------------~~~l~~v~liIiDEaH~ 1475 (2114)
+|+.++|+.+... +....++|+|+|...+ ...+|.... ......+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 9999999876553 3345679999999987 223332110 11235578999999995
Q ss_pred cc-CC-C------C----chHHHHHHHHHHHHhhcCC-------------------------------------------
Q 000129 1476 IG-GQ-G------G----PVLEVIVSRMRYIASQVEN------------------------------------------- 1500 (2114)
Q Consensus 1476 l~-~~-~------g----~~le~i~srl~~i~~~~~~------------------------------------------- 1500 (2114)
+. ++ + | .....+......+..++..
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 42 11 1 1 1000111111111000000
Q ss_pred --------------------------------------------------------------------------CceEEE
Q 000129 1501 --------------------------------------------------------------------------KIRIVA 1506 (2114)
Q Consensus 1501 --------------------------------------------------------------------------~~riV~ 1506 (2114)
=.++.|
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 023667
Q ss_pred EcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChH
Q 000129 1507 LSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2114)
Q Consensus 1507 lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~ 1585 (2114)
||||.+.. +++.++++... +. .|..+|..-. ....+-......... .+...+......+.|+||||+|++
T Consensus 414 mTGTa~~~~~El~~~y~l~v---v~-IPt~kp~~r~-~~~~~v~~t~~~K~~----aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPV---VR-IPTNRPSQRR-HLPDEVFLTAAAKWA----AVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred ccCcChHHHHHHHHHHCCCe---EE-eCCCCCccce-ecCCEEEeCHHHHHH----HHHHHHHHHHhcCCCEEEEeCcHH
Confidence 77777653 35666666552 11 2223332111 111110011111111 122223222234688999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000129 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2114)
Q Consensus 1586 ~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa 1665 (2114)
.++.++..|.. .+..+..+||.++..++..+ .|..+...|+||
T Consensus 485 ~se~L~~~L~~-----------------------------------~gi~~~~Lhg~~~~rE~~ii--~~ag~~g~VlVA 527 (656)
T PRK12898 485 ASERLSALLRE-----------------------------------AGLPHQVLNAKQDAEEAAIV--ARAGQRGRITVA 527 (656)
T ss_pred HHHHHHHHHHH-----------------------------------CCCCEEEeeCCcHHHHHHHH--HHcCCCCcEEEE
Confidence 99999877732 23457899999765555554 455555679999
Q ss_pred cCccccccCCC---CcE-----EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1666 SSSMCWGVPLT---AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1666 T~~la~Gvdip---~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|++++||+|++ ++. +|| +++.|.+...|.||+|||||. +.+|.++.+++..+
T Consensus 528 TdmAgRGtDI~l~~~V~~~GGLhVI----------~~d~P~s~r~y~hr~GRTGRq--G~~G~s~~~is~eD 587 (656)
T PRK12898 528 TNMAGRGTDIKLEPGVAARGGLHVI----------LTERHDSARIDRQLAGRCGRQ--GDPGSYEAILSLED 587 (656)
T ss_pred ccchhcccCcCCccchhhcCCCEEE----------EcCCCCCHHHHHHhcccccCC--CCCeEEEEEechhH
Confidence 99999999999 665 888 899999999999999999998 68999999988744
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=265.06 Aligned_cols=315 Identities=24% Similarity=0.351 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHHcC---C--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS---A--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
+||.-|++++..+... . -|-|++|.-|||||++|+++++..+..+ +++..++||--||.|.+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-----------~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-----------YQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-----------CeeEEeccHHHHHHHHHHH
Confidence 7899999999998653 1 2679999999999999999999998754 5899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
+.++|.++|++|..++|...-..+. ....+|+|+|.. +.. +...++++.|+||||=|+.+ -.
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFG----V~ 399 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFG----VH 399 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEecccccc----HH
Confidence 9999999999999999987655432 246899999976 222 33567889999999999864 22
Q ss_pred HHHHHHHHHHHHhhccc-cccEEEEccccCChHHHHHHHhccccCceEe-ecCCcccccceeEEEeeccCchhHHHHHhh
Q 000129 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~-~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 720 (2114)
-. ..+...+. .+.++.|||| |=+..++--.-.++...... ....- .|+.-..+ ..... .
T Consensus 400 QR-------~~L~~KG~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~GR--kpI~T~~i--~~~~~----~--- 460 (677)
T COG1200 400 QR-------LALREKGEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPGR--KPITTVVI--PHERR----P--- 460 (677)
T ss_pred HH-------HHHHHhCCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCCC--CceEEEEe--ccccH----H---
Confidence 11 11223445 6889999999 55556555443333211110 00111 12222222 22211 1
Q ss_pred HHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc-cCceE
Q 000129 721 DLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFA 798 (2114)
Q Consensus 721 ~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll-~~gv~ 798 (2114)
.+++.+. +...++|+.+.|+-..+.+++- +..... . ...|+..+ .+.|+
T Consensus 461 -~v~e~i~~ei~~GrQaY~VcPLIeESE~l~--l~~a~~--------------~------------~~~L~~~~~~~~vg 511 (677)
T COG1200 461 -EVYERIREEIAKGRQAYVVCPLIEESEKLE--LQAAEE--------------L------------YEELKSFLPELKVG 511 (677)
T ss_pred -HHHHHHHHHHHcCCEEEEEeccccccccch--hhhHHH--------------H------------HHHHHHHcccceeE
Confidence 1222332 2335889999999887776332 110000 0 01122222 24589
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000129 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2114)
..||.|+..++..|++.|++|+++|||||.+.+.|||+|+.+++|- +|++. +..+++.|-.||.||.+ .
T Consensus 512 L~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~ 580 (677)
T COG1200 512 LVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--L 580 (677)
T ss_pred EEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--c
Confidence 9999999999999999999999999999999999999999999774 78775 58999999999999965 6
Q ss_pred ceEEEEEcCCCc
Q 000129 879 YGEGIIITGHSE 890 (2114)
Q Consensus 879 ~G~~iil~~~~e 890 (2114)
.+.|++++..+.
T Consensus 581 qSyC~Ll~~~~~ 592 (677)
T COG1200 581 QSYCVLLYKPPL 592 (677)
T ss_pred ceEEEEEeCCCC
Confidence 799999998765
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=268.68 Aligned_cols=323 Identities=15% Similarity=0.133 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|..+...+..+ .|..++||+|||++|.+|++-....+ ..+.+++|+..||.|.++.+..++
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 6788898888765443 39999999999999999995443332 158999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccccc--CCchhHH--
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE-- 644 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~le-- 644 (2114)
..+|++|+.++|+.+...+ ..-.++|+|+||.++ |.+..+. .....++.++++||||+|.++- .|.|.+-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 9999999999998775443 234689999999986 6665442 1234568899999999997742 2222111
Q ss_pred ------HHH---HHHHHHHhhc-----cccc-------------------------------------------------
Q 000129 645 ------SIV---ARTVRQIETT-----KEHI------------------------------------------------- 661 (2114)
Q Consensus 645 ------~iv---~rl~~~~~~~-----~~~~------------------------------------------------- 661 (2114)
.+. ..+.+.+... ...-
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 111 1111111100 0011
Q ss_pred ------------------------------------------------------------cEEEEccccCChHHHHHHHh
Q 000129 662 ------------------------------------------------------------RLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 662 ------------------------------------------------------------riv~lSATlpn~~dva~~l~ 681 (2114)
++.|||.|... +-.+|..
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~~ 359 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFEK 359 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHHH
Confidence 22222333211 0111111
Q ss_pred ccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000129 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2114)
Q Consensus 682 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2114)
.. .-. +..-+..+|+.....-..+. .....+..++ +.+....+..+.|+||||+|...++.++..|...++..
T Consensus 360 iY-~l~-vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai---~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~- 432 (745)
T TIGR00963 360 IY-NLE-VVVVPTNRPVIRKDLSDLVY-KTEEEKWKAV---VDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH- 432 (745)
T ss_pred Hh-CCC-EEEeCCCCCeeeeeCCCeEE-cCHHHHHHHH---HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe-
Confidence 10 000 11112222221110000000 0011122222 12222234457899999999999999999998765433
Q ss_pred ccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCc---
Q 000129 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA--- 838 (2114)
Q Consensus 762 ~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~--- 838 (2114)
..+||. +.+|+..+..|+.+...|+|||++++||+|++.
T Consensus 433 ------------------------------------~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 433 ------------------------------------NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred ------------------------------------EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 345888 789999999999999999999999999999998
Q ss_pred ----eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 839 ----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 839 ----v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
..+||+ |+.+. |...+.|+.|||||.| .+|.+..+.+..+
T Consensus 475 ~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 475 KELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred hhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 558998 55554 7788999999999988 7799888887654
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=275.23 Aligned_cols=315 Identities=20% Similarity=0.211 Sum_probs=194.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+...|+|+|..+... -.+...+||.||||+|||.+++.++.+.+..+. ..+++|..||+++++++++++.
T Consensus 283 ~~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~---------~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 283 NGYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL---------ADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEECcHHHHHHHHHHHHH
Confidence 345899999988543 234567999999999999999887776554321 2379999999999999999988
Q ss_pred HhhccC--CcEEEEEeCCCccCh-----------------------hhh-------ccceEEEcCHhHH-HHHHhccCCC
Q 000129 572 NRLQMY--DVKVRELSGDQTLTR-----------------------QQI-------EETQIIVTTPEKW-DIITRKSGDR 618 (2114)
Q Consensus 572 ~~~~~~--gi~v~~l~Gd~~~~~-----------------------~~~-------~~~~IiV~TPek~-d~l~r~~~~~ 618 (2114)
+.+... ..++..++|...+.. +.. --.+|+|||+.++ ..+.....
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh-- 430 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH-- 430 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--
Confidence 644321 346777787654221 001 1268999999985 23332211
Q ss_pred cccccc----cEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhcc-c-c----C
Q 000129 619 TYTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVN-L-E----K 686 (2114)
Q Consensus 619 ~~l~~v----~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~-~-~----~ 686 (2114)
.+++.+ ++|||||+|.+- +.+..++.++++.... ...++|+||||+|.. +.+..-++.. . . .
T Consensus 431 ~~lR~~~La~svvIiDEVHAyD----~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~Y 504 (878)
T PRK09694 431 RFIRGFGLGRSVLIVDEVHAYD----AYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAY 504 (878)
T ss_pred HHHHHHhhccCeEEEechhhCC----HHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccccccccc
Confidence 122222 589999999873 2333444445444333 456799999999852 1111111110 0 0 0
Q ss_pred ceE---------eecCCcc----cccceeEEEeeccCchhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHH
Q 000129 687 GLF---------YFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARA 752 (2114)
Q Consensus 687 ~~~---------~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~ 752 (2114)
+.. .+..... +.+....+........ .-...+.+.+.+. ..++++||||||++.|+.+++.
T Consensus 505 Plvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~ 579 (878)
T PRK09694 505 PLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQR 579 (878)
T ss_pred ccccccccccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHH
Confidence 000 0000000 0111000000000000 0011233334333 3478999999999999999999
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH----HHHHHH-hCCC---ceEE
Q 000129 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVL 824 (2114)
Q Consensus 753 L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~----~v~~~F-~~g~---i~VL 824 (2114)
|++.+.. ...+..+||+++..+|. .+++.| ++|. .+||
T Consensus 580 L~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 580 LKELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 9754211 02367889999999995 466677 6666 4799
Q ss_pred EechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
|||+++++|||++ .+++|... .++..++||+||+||.+.
T Consensus 626 VaTQViE~GLDId-~DvlItdl------------aPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDLD-FDWLITQL------------CPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeecC-CCeEEECC------------CCHHHHHHHHhccCCCCC
Confidence 9999999999995 68888521 145689999999999865
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=290.33 Aligned_cols=284 Identities=18% Similarity=0.192 Sum_probs=186.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+|+++|..+++.++.+. +++++||||||||. |.+++...+... +.+++||+||++||.|+++.+.+
T Consensus 76 g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHHHHHHHHH
Confidence 3479999999999998875 59999999999997 556666555331 35899999999999999999999
Q ss_pred hhccCCcEE---EEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C---
Q 000129 573 RLQMYDVKV---RELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2114)
Q Consensus 573 ~~~~~gi~v---~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (2114)
+....|+.+ +.++|+.+...+. ...++|+|+||+++........ ..++++|+||||.+.+ .
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887777654 3577887654431 1358999999998733222211 1789999999999976 2
Q ss_pred --------Cch-hHHHHHHHH---------------HHHHhhcccccc--EEEEccccCChHHHH-HHHhccccCceEee
Q 000129 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (2114)
Q Consensus 639 --------rg~-~le~iv~rl---------------~~~~~~~~~~~r--iv~lSATlpn~~dva-~~l~~~~~~~~~~f 691 (2114)
+.+ .++.++..+ ....+..+...| ++.+|||..+. .+. .+++... .+..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~ll---~~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRELL---GFEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccccc---ceEe
Confidence 222 233332211 111112223333 67789994322 222 2222111 1111
Q ss_pred cCCc-ccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecCh---HHHHHHHHHHHHHhhccccccccc
Q 000129 692 DNSY-RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (2114)
Q Consensus 692 ~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~l~~~l 767 (2114)
.... ..-.+.+.++.. .. .... +.+ +.... +.++||||+|+ +.|..++..|.+.++
T Consensus 295 ~~~~~~~r~I~~~~~~~--~~---~~~~----L~~-ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~--------- 354 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVED--ED---LKET----LLE-IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGV--------- 354 (1171)
T ss_pred cCccccccceEEEEEec--cc---HHHH----HHH-HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCc---------
Confidence 1111 111222333211 11 1111 112 22222 46899999999 999999999876543
Q ss_pred ccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEE
Q 000129 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2114)
.++.+||+|+. .+++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 355 ----------------------------~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 355 ----------------------------KAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred ----------------------------eEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 24567999973 6889999999999999 489999999999 8999
Q ss_pred EecceeccCCC
Q 000129 843 IKGTQIYNPEK 853 (2114)
Q Consensus 843 I~~~~~yd~~~ 853 (2114)
|+ |+.|+
T Consensus 403 I~----~~~P~ 409 (1171)
T TIGR01054 403 VF----LGVPK 409 (1171)
T ss_pred EE----ECCCC
Confidence 99 88775
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=263.14 Aligned_cols=403 Identities=18% Similarity=0.254 Sum_probs=282.1
Q ss_pred CCCHHHHHHHHHHHc---CC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYN---TD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~---~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.-||-|..||+.+.+ +. -+=||||.-|-|||.+|+=|++..... ++ ++.++|||.-||.|.|+.|+++|.
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHHhHHHHHHHHHHHhc
Confidence 579999999999874 22 247999999999999999998887766 44 999999999999999999999998
Q ss_pred CCCCcEEEEEcCCcccc-----hhhccCC--cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMD-----LKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~-----~~~l~~~--~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
.. +++|..+..-.+.. .+.++.+ ||||+|-. ++. ....+++++|+||||-|+.|-. --
T Consensus 669 ~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~---kdv~FkdLGLlIIDEEqRFGVk-------~K 733 (1139)
T COG1197 669 GF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS---KDVKFKDLGLLIIDEEQRFGVK-------HK 733 (1139)
T ss_pred CC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC---CCcEEecCCeEEEechhhcCcc-------HH
Confidence 75 89999988755443 3445555 99999943 222 3556889999999999998732 12
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHH
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1568 (2114)
.+++.+ ..++-++-||||+-.-.-=....|...-.++..+|..| .|+..++..++.. -+..+|.
T Consensus 734 EkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-~pV~T~V~~~d~~-----------~ireAI~ 797 (1139)
T COG1197 734 EKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-LPVKTFVSEYDDL-----------LIREAIL 797 (1139)
T ss_pred HHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-cceEEEEecCChH-----------HHHHHHH
Confidence 334444 56899999999974322222344555555666555544 4777777665422 2345666
Q ss_pred HHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHH
Q 000129 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2114)
Q Consensus 1569 ~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR 1648 (2114)
..+..+|++-..+|..+....++..|..... ...|++-||.|+..+-
T Consensus 798 REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP---------------------------------EarI~vaHGQM~e~eL 844 (1139)
T COG1197 798 RELLRGGQVFYVHNRVESIEKKAERLRELVP---------------------------------EARIAVAHGQMREREL 844 (1139)
T ss_pred HHHhcCCEEEEEecchhhHHHHHHHHHHhCC---------------------------------ceEEEEeecCCCHHHH
Confidence 7778999999999999999999987754332 2359999999999999
Q ss_pred HHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
+.++..|-+|+.+|||||.+.+.|||+|+.+.+|. ++.--+-.+++.|..||+||. +..|.||+++.+.
T Consensus 845 E~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII---------e~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~ 913 (1139)
T COG1197 845 EEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII---------ERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE---------eccccccHHHHHHhccccCCc--cceEEEEEeecCc
Confidence 99999999999999999999999999997666552 344446789999999999998 8999999999976
Q ss_pred c---HHHHHHHHHhcc-------------CCCCcc---ccCCCcc-chH----HHHHHHHHHHHHHHHHCCCceecC-CC
Q 000129 1729 R---KEYYKKFLRLTQ-------------NPNYYN---LQGVSHR-HLS----DHLSELVENTISDLEASKCIIIEE-DM 1783 (2114)
Q Consensus 1729 ~---~~~~~~~lRl~~-------------nP~~y~---l~~~s~~-~l~----~~lselve~~l~~L~~~~~I~~~~-~~ 1783 (2114)
+ +...+++.-+.. +-...| +.|..+. ++. +.-.++++.++..|....-+.... +.
T Consensus 914 k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLeeAI~~lk~~~e~~~~~~~~ 993 (1139)
T COG1197 914 KALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEV 993 (1139)
T ss_pred cccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccccCchheecHHHHHHHHHHHHHHHhcCCcccccCCCe
Confidence 4 344444442222 112222 2222111 121 224688999999998833332111 11
Q ss_pred ccccCcccchhhhcccCHhHHH-HHHhhcCCCCChhhHHHHH
Q 000129 1784 DLSPSNHGMIASYYYISYTTIE-RFSSSLTPKTRMKGLLEVL 1824 (2114)
Q Consensus 1784 ~~~~t~lG~i~s~y~i~~~T~~-~f~~sl~~~~~~~~iL~il 1824 (2114)
.+..---+.|- ..||.-...+ .|+..+....+..++-++-
T Consensus 994 eIdL~~~a~iP-e~YI~d~~~rl~~YkRi~~~~s~~el~~i~ 1034 (1139)
T COG1197 994 EIDLPVPAFIP-EDYIPDDNLRLELYKRLANAESEEELEEIK 1034 (1139)
T ss_pred eEecCCCCcCC-hhhccCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23222224443 4455544444 5666677666666555554
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=270.18 Aligned_cols=325 Identities=17% Similarity=0.138 Sum_probs=208.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+++|..+...+..+ .|+.+.||+|||++|.+|++..... +. .+.+++||++||.|.+..+.. +...+|+
T Consensus 78 ~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~~-l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMGQ-VYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHHH-HHhhcCC
Confidence 7888998888777543 2999999999999999999865554 33 799999999999999998884 5556799
Q ss_pred EEEEEcCCcc-cc-hhhccCCcEEEEChhhH-HHHHhh-h---cccccccceeEEEeccccccc-CC-C------Cch--
Q 000129 1421 RVVELTGETA-MD-LKLLEKGQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG-GQ-G------GPV-- 1483 (2114)
Q Consensus 1421 ~v~~l~G~~~-~~-~~~l~~~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~liIiDEaH~l~-~~-~------g~~-- 1483 (2114)
+|+.++|+.+ .. .+....++|+++||+.+ ..+++. . .....+..+.++|+||||.+. ++ + |+.
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999887 43 44455679999999998 233332 1 112356789999999999553 21 2 111
Q ss_pred HHHHHHHHHHHHhhcCC--------CceEEEEccc----------CCC---h--hHHHHHhcCC----------------
Q 000129 1484 LEVIVSRMRYIASQVEN--------KIRIVALSTS----------LAN---A--KDLGEWIGAT---------------- 1524 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~--------~~riV~lSAT----------l~n---~--~dla~wl~~~---------------- 1524 (2114)
-..+......+..++.. ..+.+.++.. ++| . ..+..|+...
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 01112122222222111 1222222210 000 0 0111222100
Q ss_pred ----------------------------------------------------------------------------CCce
Q 000129 1525 ----------------------------------------------------------------------------SHGL 1528 (2114)
Q Consensus 1525 ----------------------------------------------------------------------------~~~~ 1528 (2114)
.-.+
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 0001
Q ss_pred eecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1529 FNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1529 ~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
+.. |..+|+...- ....-........ ..+...+......+.|+||||+|++.+..++..|..
T Consensus 389 ~~I-Pt~kp~~r~d-~~~~i~~~~~~K~----~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~------------ 450 (790)
T PRK09200 389 VQI-PTNRPIIRID-YPDKVFVTLDEKY----KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE------------ 450 (790)
T ss_pred EEC-CCCCCccccc-CCCeEEcCHHHHH----HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------
Confidence 111 1112211100 0000000000011 112222222224688999999999999988877632
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCC---CCcE-----E
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL---TAHL-----V 1680 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdi---p~~~-----v 1680 (2114)
.+..+..+||.++..++..+...+..| +|+|||++++||+|+ |++. +
T Consensus 451 -----------------------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 451 -----------------------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred -----------------------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 234578999999999998888887776 799999999999999 6887 9
Q ss_pred EEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|| +++.|.+...|.||+|||||. |.+|.++.+++..+
T Consensus 506 VI----------~~d~p~s~r~y~qr~GRtGR~--G~~G~s~~~is~eD 542 (790)
T PRK09200 506 VI----------GTERMESRRVDLQLRGRSGRQ--GDPGSSQFFISLED 542 (790)
T ss_pred EE----------eccCCCCHHHHHHhhccccCC--CCCeeEEEEEcchH
Confidence 99 899999999999999999998 78999999987644
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=271.10 Aligned_cols=316 Identities=17% Similarity=0.193 Sum_probs=195.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
...|+|+|+.+-... .+...++|.||||+|||.+++.++.+.+.. ...+ +++|..||+++++++++++++.+....
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 458999999885432 346679999999999999998777655544 2233 899999999999999999875332221
Q ss_pred -CcEEEEEcCCcccch-----------------------hhcc-------CCcEEEEChhhHHHHHhhhcccccccce--
Q 000129 1419 -GMRVVELTGETAMDL-----------------------KLLE-------KGQIIISTPEKWDALSRRWKQRKYVQQV-- 1465 (2114)
Q Consensus 1419 -g~~v~~l~G~~~~~~-----------------------~~l~-------~~~IIV~TPe~l~~l~r~~~~~~~l~~v-- 1465 (2114)
..++..++|....+. ..+. -++|+|||+.++..-.-..+ ...++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k-h~~lR~~~L 438 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK-HRFIRGFGL 438 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc-hHHHHHHhh
Confidence 246777777543110 1111 25999999999763221111 1122222
Q ss_pred --eEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh--HHHHHhcCCCC----c---ee-----
Q 000129 1466 --SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK--DLGEWIGATSH----G---LF----- 1529 (2114)
Q Consensus 1466 --~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~--dla~wl~~~~~----~---~~----- 1529 (2114)
++|||||+|.+.......++.+ ++.+ . ....++|+||||+|... .+.+-++.... . .+
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~---L~~l-~--~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAV---LKAQ-A--QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHH---HHHH-H--hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 5899999998843222222222 2322 2 23567999999998632 33332222100 0 00
Q ss_pred ----ecCCCC----CccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccC
Q 000129 1530 ----NFPPGV----RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2114)
Q Consensus 1530 ----~f~~~~----rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~ 1601 (2114)
.+.... .+.+..+.+........ .........+...+..++++||||||++.|..+++.|.....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-- 585 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-- 585 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC--
Confidence 000000 01111111111100000 001233445555556788999999999999999987743210
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHH----HHHHHH-hcCC---ceEEEecCcccccc
Q 000129 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE----VVSALF-EAGK---IKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~----~v~~~F-~~g~---i~VLVaT~~la~Gv 1673 (2114)
-...+..+||.++..+|. .+++.| ++|+ .+|||||+++++||
T Consensus 586 ------------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GL 635 (878)
T PRK09694 586 ------------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSL 635 (878)
T ss_pred ------------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhee
Confidence 012488999999999994 567778 6666 47999999999999
Q ss_pred CCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC
Q 000129 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2114)
Q Consensus 1674 dip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~ 1715 (2114)
|++. .++| . ...|+..++||+||+||.+.
T Consensus 636 DId~-DvlI----------t--dlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 636 DLDF-DWLI----------T--QLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ecCC-CeEE----------E--CCCCHHHHHHHHhccCCCCC
Confidence 9975 5666 1 23468899999999999864
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=268.91 Aligned_cols=427 Identities=18% Similarity=0.209 Sum_probs=283.9
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~---~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
...+|+-|..++..+..+ ....++.+.||||||.+|+-+|-+.+.+ ++ .+|+++|-.+|..|+.++|+.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk--qvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK--QVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC--EEEEEeccccchHHHHHHHHHHhC
Confidence 347999999999998765 4679999999999999999888888877 45 899999999999999999999996
Q ss_pred CCCCcEEEEEcCCcccch-----hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccc--cCCCCchH--
Q 000129 1416 QGLGMRVVELTGETAMDL-----KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI--GGQGGPVL-- 1484 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~-----~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l--~~~~g~~l-- 1484 (2114)
.+|++++++.+... ... .++.|+|+| +..-...++++++|||||-|-- ..+.++.|
T Consensus 271 ----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 271 ----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred ----CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 47889998877642 222 345899999 5455668999999999999933 33344443
Q ss_pred -HHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCC--ceeecCCCC-CccCcEEEEecccccchHHHHHhcC
Q 000129 1485 -EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH--GLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMT 1560 (2114)
Q Consensus 1485 -e~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~--~~~~f~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~ 1560 (2114)
++.+-|-+ ..++.+|+-|||++ +..|...... ..+.+.... +..+..+.+........... ....
T Consensus 338 RdvA~~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS 406 (730)
T COG1198 338 RDVAVLRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLS 406 (730)
T ss_pred HHHHHHHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCC
Confidence 22222222 34789999999985 4445444332 222332222 22234444443332221111 1167
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHH-----HH-------------------HHHHhhccCCcccccccCCCcccc
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLT-----AV-------------------DLMTYSSMDGDQKSAFLLWPAEEV 1616 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~l-----a~-------------------~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2114)
..++..|.+.+..+.++|+|+|.|.-+-.+ .. ..|++|.........|..|..+.+
T Consensus 407 ~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 407 PALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 888999999999999999999999743211 11 124455544333333666655544
Q ss_pred hh---hHhhhhHHHHHHHhccceEeecCCCCHH--HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEE-E--eeeEe
Q 000129 1617 EP---FIDNIQEEMLKATLRHGVGYLHEGLNKT--DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-M--GTQYY 1688 (2114)
Q Consensus 1617 ~~---~~~~i~d~~L~~~l~~gV~~~H~~ls~~--dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~--gt~~y 1688 (2114)
.. -.+++.++.-..+....|..+.++.+.. .-+..+..|.+|+++|||.|++++.|.|+|+++.|. . ++..+
T Consensus 487 ~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~ 566 (730)
T COG1198 487 RAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG 566 (730)
T ss_pred EEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc
Confidence 43 3566666666666688899998886653 356789999999999999999999999999998775 2 22222
Q ss_pred cCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH---------------HhccCCCCccccCCCc
Q 000129 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL---------------RLTQNPNYYNLQGVSH 1753 (2114)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l---------------Rl~~nP~~y~l~~~s~ 1753 (2114)
.+. -+........+.|-+|||||. +..|.+++.+..++...++..+ +....|+|+.+..+..
T Consensus 567 ~~D-fRA~Er~fqll~QvaGRAgR~--~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~ 643 (730)
T COG1198 567 SPD-FRASERTFQLLMQVAGRAGRA--GKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIA 643 (730)
T ss_pred CCC-cchHHHHHHHHHHHHhhhccC--CCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeEe
Confidence 222 233344577899999999997 7899999999999855444333 5788999998766533
Q ss_pred cch-HHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcc
Q 000129 1754 RHL-SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYY 1798 (2114)
Q Consensus 1754 ~~l-~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~ 1798 (2114)
.+- .+...+.+...-..|....-..+ +-.+..|.++.+++..|-
T Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vlGP~~a~~~r~~~~yR 688 (730)
T COG1198 644 SAKNEEKALEFARALRELLKEALPVDV-EVLGPAPAPLAKLAGRYR 688 (730)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccc-eeeCCCcchhHHhCCceE
Confidence 322 12222222222223333322211 112345666666666654
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=264.08 Aligned_cols=323 Identities=14% Similarity=0.172 Sum_probs=203.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++|+|.|++..+..... .++.++||+|||++|.+|++..... +. .++|++|+++||.|.++.+. .+.+.+|+
T Consensus 68 glrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~-~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMG-PVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHH-HHHhhcCC
Confidence 457777777776654344 6999999999999999998766554 33 68999999999999998877 56566799
Q ss_pred EEEEEcCCc-----ccc-hhhccCCcEEEEChhhH-HHHHhhh----cccccccceeEEEecccccccC-C-C------C
Q 000129 1421 RVVELTGET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-G------G 1481 (2114)
Q Consensus 1421 ~v~~l~G~~-----~~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~liIiDEaH~l~~-~-~------g 1481 (2114)
+|+...++. ..+ .+....++|+++||+++ ..+++.. .....++.+.++|+||||.++- + + |
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 998877652 111 23345779999999998 3444331 1123467899999999996632 1 1 1
Q ss_pred ch-H-HHHHHHHHHHHhhcCC--------Cce------------------------------------------------
Q 000129 1482 PV-L-EVIVSRMRYIASQVEN--------KIR------------------------------------------------ 1503 (2114)
Q Consensus 1482 ~~-l-e~i~srl~~i~~~~~~--------~~r------------------------------------------------ 1503 (2114)
+. . ..+...+..+...+.. ..+
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 10 0 0112222122222111 112
Q ss_pred -------------------------------------------------------------EEEEcccCCC-hhHHHHHh
Q 000129 1504 -------------------------------------------------------------IVALSTSLAN-AKDLGEWI 1521 (2114)
Q Consensus 1504 -------------------------------------------------------------iV~lSATl~n-~~dla~wl 1521 (2114)
+.|||.|... ..+|.+..
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 2223333211 01111111
Q ss_pred cCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccC
Q 000129 1522 GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2114)
Q Consensus 1522 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~ 1601 (2114)
+.. ++. -|..+|+...-. ...-........ ......+.+....+.|+||||+|+..++.++..|..
T Consensus 381 ~l~---v~~-IPt~kp~~r~d~-~d~i~~~~~~K~----~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~----- 446 (762)
T TIGR03714 381 SLS---VVK-IPTNKPIIRIDY-PDKIYATLPEKL----MATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR----- 446 (762)
T ss_pred CCC---EEE-cCCCCCeeeeeC-CCeEEECHHHHH----HHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH-----
Confidence 110 111 122222211100 000000001111 112222333335688999999999999888876632
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC-----
Q 000129 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT----- 1676 (2114)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip----- 1676 (2114)
.+..+..+||.+++.+|..+...++.| +|+|||++++||+|+|
T Consensus 447 ------------------------------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v 494 (762)
T TIGR03714 447 ------------------------------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGV 494 (762)
T ss_pred ------------------------------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccc
Confidence 234578899999999998888877777 7999999999999999
Q ss_pred ----CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1677 ----AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1677 ----~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
++.||+ +++.|....+ .||+|||||. |.+|.++.+++..+
T Consensus 495 ~~~GGL~vIi----------t~~~ps~rid-~qr~GRtGRq--G~~G~s~~~is~eD 538 (762)
T TIGR03714 495 AELGGLAVIG----------TERMENSRVD-LQLRGRSGRQ--GDPGSSQFFVSLED 538 (762)
T ss_pred cccCCeEEEE----------ecCCCCcHHH-HHhhhcccCC--CCceeEEEEEccch
Confidence 889998 7777766666 9999999998 78999999987654
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=238.86 Aligned_cols=430 Identities=16% Similarity=0.159 Sum_probs=278.5
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
|-.+++ ...-|---|+.-|-.++..++.++++|.||||||.......+...... .+ .+.+..|+|.-|.+++.+.
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RV 111 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRV 111 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHH
Confidence 344443 233455567788888998899899999999999987766666554442 23 6889999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
...+.-.+|-.|+...- .....-.++-+-+||.+. ++|.......+..+++||+||||. |.-.-..+..-
T Consensus 112 adEMDv~lG~EVGysIr---fEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeahE----RtlATDiLmGl 181 (699)
T KOG0925|consen 112 ADEMDVTLGEEVGYSIR---FEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAHE----RTLATDILMGL 181 (699)
T ss_pred HHHhccccchhcccccc---ccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhhh----hhHHHHHHHHH
Confidence 87665434444433211 111111112234567665 455555677899999999999993 33334456666
Q ss_pred HHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHH
Q 000129 1491 MRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH 1570 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 1570 (2114)
++.+..+ .+++++|.+|||+ ++..+..|+|..+ +...+. . .|+++.+..-...++.. +..+.++ .|...
T Consensus 182 lk~v~~~-rpdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~--~PvEi~Yt~e~erDylE---aairtV~-qih~~ 250 (699)
T KOG0925|consen 182 LKEVVRN-RPDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPG-T--HPVEIFYTPEPERDYLE---AAIRTVL-QIHMC 250 (699)
T ss_pred HHHHHhh-CCCceEEEeeccc-chHHHHHHhCCCC--eeecCC-C--CceEEEecCCCChhHHH---HHHHHHH-HHHhc
Confidence 6766655 3699999999998 7889999998875 454443 3 34555444333333222 1112222 22222
Q ss_pred hcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1571 l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
...+.+|||.++..+.+.+++.+..... ..........|..+| +.++..
T Consensus 251 -ee~GDilvFLtgeeeIe~aC~~i~re~~--------------------------~L~~~~g~l~v~PLy----P~~qq~ 299 (699)
T KOG0925|consen 251 -EEPGDILVFLTGEEEIEDACRKISREVD--------------------------NLGPQVGPLKVVPLY----PAQQQR 299 (699)
T ss_pred -cCCCCEEEEecCHHHHHHHHHHHHHHHH--------------------------hhccccCCceEEecC----chhhcc
Confidence 4578899999999998888877642211 111122233466777 444444
Q ss_pred HHHHHhc---C--CceEEEecCccccccCCCCcEEEE----EeeeEecCCcCc----CCCCCHhHHHHhHcccCCCCCCC
Q 000129 1651 VSALFEA---G--KIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1651 v~~~F~~---g--~i~VLVaT~~la~Gvdip~~~vVI----~gt~~yd~~~~~----~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
+++.... | ..+|+|+|++++.++.++++.+|| ...+.|+++... -.|+|.++..||.||||| ..
T Consensus 300 iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr---t~ 376 (699)
T KOG0925|consen 300 IFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR---TR 376 (699)
T ss_pred ccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC---CC
Confidence 5444322 2 468999999999999999999999 234678877432 458999999999999999 58
Q ss_pred ceEEEEEeecCcHH------HHHHHHHhccCCCC-----ccccCCCccch-HHHHHHHHHHHHHHHHHCCCceecCCCcc
Q 000129 1718 SGKCVILCHAPRKE------YYKKFLRLTQNPNY-----YNLQGVSHRHL-SDHLSELVENTISDLEASKCIIIEEDMDL 1785 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~------~~~~~lRl~~nP~~-----y~l~~~s~~~l-~~~lselve~~l~~L~~~~~I~~~~~~~~ 1785 (2114)
+|+|+.++++.-.. .|..++|......- .++.+.-+.+. ....-|.+.+++++|.-.+|+.- +-
T Consensus 377 pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdD----dG 452 (699)
T KOG0925|consen 377 PGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDD----DG 452 (699)
T ss_pred CCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCC----Cc
Confidence 99999999764211 12222211100000 12222222221 11134777888999988888842 34
Q ss_pred ccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHh
Q 000129 1786 SPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLA 1825 (2114)
Q Consensus 1786 ~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils 1825 (2114)
..|.+|.+||.|+++|..+++++.+...+++ .++|.|-|
T Consensus 453 nLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisA 491 (699)
T KOG0925|consen 453 NLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISA 491 (699)
T ss_pred ccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHh
Confidence 5788999999999999999999998877766 45555544
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=276.57 Aligned_cols=288 Identities=17% Similarity=0.125 Sum_probs=182.1
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
..|.++|. ....|+|+|.++++.++.+. +++++||||||||+ |.+++...+.. .+. +++||+||++||.|++
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~--~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAK--KGK--RCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHh--cCC--eEEEEeCHHHHHHHHH
Confidence 34566664 24579999999999999865 59999999999997 55666655544 233 9999999999999999
Q ss_pred HHHHHHhcCCCCcEE---EEEcCCcccchh-----hcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1408 RDWEIKFGQGLGMRV---VELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v---~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.+++ +....|+.+ +.++|+.+...+ .+. ..+|+|+||+++.....++. .+++++|+||||.+.
T Consensus 139 ~~l~~-l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 139 EKISS-LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHH-HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhh
Confidence 99985 554445443 457787765421 222 36999999999876655421 179999999999887
Q ss_pred CCC----------Cc---hHHHHHHH---------------HHHHHhhcCCCce--EEEEcccCCChhHHH-HHhcCCCC
Q 000129 1478 GQG----------GP---VLEVIVSR---------------MRYIASQVENKIR--IVALSTSLANAKDLG-EWIGATSH 1526 (2114)
Q Consensus 1478 ~~~----------g~---~le~i~sr---------------l~~i~~~~~~~~r--iV~lSATl~n~~dla-~wl~~~~~ 1526 (2114)
+.. |. .++.++.. +..+....+...| ++++|||..+.. +. .++.. ..
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~-~~~~l~r~-ll 290 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRG-KRAKLFRE-LL 290 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccc-cHHHHccc-cc
Confidence 631 11 12222211 1111222233333 677899943221 11 12111 10
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCCh---HHHHHHHHHHHHhhccCCc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR---KYVRLTAVDLMTYSSMDGD 1603 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr---~~a~~la~~L~~~~~~~~~ 1603 (2114)
. +....... .+....+.+..... . ......+...+ +.++||||+|+ +.|..++..|..
T Consensus 291 ~-~~v~~~~~--~~r~I~~~~~~~~~--~-----~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~------- 351 (1171)
T TIGR01054 291 G-FEVGGGSD--TLRNVVDVYVEDED--L-----KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLEN------- 351 (1171)
T ss_pred c-eEecCccc--cccceEEEEEeccc--H-----HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHh-------
Confidence 0 11111111 11111111110010 0 11122233332 46799999999 888888866622
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCCCC-c
Q 000129 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-H 1678 (2114)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~-~ 1678 (2114)
.+..+..+||+|+. .+++.|++|+++|||| |++++||||+|+ +
T Consensus 352 ----------------------------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V 399 (1171)
T TIGR01054 352 ----------------------------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERV 399 (1171)
T ss_pred ----------------------------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccc
Confidence 23468899999973 6889999999999999 589999999999 7
Q ss_pred EEEE
Q 000129 1679 LVVV 1682 (2114)
Q Consensus 1679 ~vVI 1682 (2114)
++||
T Consensus 400 ~~vI 403 (1171)
T TIGR01054 400 RYAV 403 (1171)
T ss_pred cEEE
Confidence 8888
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=257.68 Aligned_cols=322 Identities=16% Similarity=0.096 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+++|..+...+..+ .+..++||+|||++|.+|++-.... +. .+.+++||+.||.|.++.+. .+.+.+|+
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~-~l~~~LGL 126 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMG-QVYRFLGL 126 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHH-HHhccCCC
Confidence 6778888777766543 3899999999999999999533333 33 68999999999999999888 55566799
Q ss_pred EEEEEcCCcccch-hhccCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEecccccccC--CC------Cc--hH
Q 000129 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG--QG------GP--VL 1484 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~~--~~------g~--~l 1484 (2114)
+|+.++|+.+... +..-.++|+|+||.++ ..++|... ....++.+.++||||+|.++- .+ |+ .-
T Consensus 127 sv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 9999999877653 2334579999999998 66666521 123578899999999996642 11 21 00
Q ss_pred HHHHHHHHHHHhhcCC--------Cce-----------------------------------------------------
Q 000129 1485 EVIVSRMRYIASQVEN--------KIR----------------------------------------------------- 1503 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~--------~~r----------------------------------------------------- 1503 (2114)
..+......+...+.. ..+
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 286 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRD 286 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 1111111111111110 111
Q ss_pred --------------------------------------------------------EEEEcccCCCh-hHHHHHhcCCCC
Q 000129 1504 --------------------------------------------------------IVALSTSLANA-KDLGEWIGATSH 1526 (2114)
Q Consensus 1504 --------------------------------------------------------iV~lSATl~n~-~dla~wl~~~~~ 1526 (2114)
+.|||.|.... .+|.+..+..
T Consensus 287 ~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~-- 364 (745)
T TIGR00963 287 GEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE-- 364 (745)
T ss_pred CEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC--
Confidence 22222222110 1111111111
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
++. -|..+|+...- .+..-+.... ...+.....+......+.|+||||+|...++.++..|..
T Consensus 365 -vv~-IPtnkp~~R~d----~~d~i~~t~~-~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~---------- 427 (745)
T TIGR00963 365 -VVV-VPTNRPVIRKD----LSDLVYKTEE-EKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE---------- 427 (745)
T ss_pred -EEE-eCCCCCeeeee----CCCeEEcCHH-HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH----------
Confidence 111 12222211100 0000000000 011122333333336789999999999999999877633
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCC-------cE
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA-------HL 1679 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~-------~~ 1679 (2114)
.+.....+||. +.+|...+..|+.+...|+|||++++||+|++. ..
T Consensus 428 -------------------------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 428 -------------------------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred -------------------------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 12346788998 789999999999999999999999999999998 56
Q ss_pred EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|| +++.|.|...+.|++|||||. |.+|.+..+++..+
T Consensus 481 ~VI----------~t~~p~s~ri~~q~~GRtGRq--G~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVI----------GTERHESRRIDNQLRGRSGRQ--GDPGSSRFFLSLED 518 (745)
T ss_pred EEE----------ecCCCCcHHHHHHHhccccCC--CCCcceEEEEeccH
Confidence 899 888999999999999999998 68899999988765
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=222.00 Aligned_cols=317 Identities=19% Similarity=0.265 Sum_probs=221.3
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.+++|.|..+-+.++ +..+..||.|-||+|||....-+|-..+.+ ++ ++.+..|+...|-+++.+++..|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc-
Confidence 389999998877764 456679999999999998876666665555 55 899999999999999999998886
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+..+..++|+.+.-. +++++|+|..++..+ -+.++++||||+|...-...+.+...+..-+.
T Consensus 170 --~~~I~~Lyg~S~~~f----r~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--- 231 (441)
T COG4098 170 --NCDIDLLYGDSDSYF----RAPLVVATTHQLLRF---------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--- 231 (441)
T ss_pred --cCCeeeEecCCchhc----cccEEEEehHHHHHH---------HhhccEEEEeccccccccCCHHHHHHHHHhhc---
Confidence 468899999877553 379999998875432 23579999999997754445556555554432
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCC--CCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 1574 (2114)
..--.|.+|||+++. +..-+..........+.. .+|.|+-..+...+......+ ..+.-..+..+..+...+
T Consensus 232 ---~~g~~IylTATp~k~--l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lekq~~~~ 305 (441)
T COG4098 232 ---KEGATIYLTATPTKK--LERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEKQRKTG 305 (441)
T ss_pred ---ccCceEEEecCChHH--HHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHHHHhcC
Confidence 355679999998753 222222221112222221 233333333222211111111 112334555566666778
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~ 1654 (2114)
.|++||+|+....+.+|..|.... ....++..|+. ...|.+..+.
T Consensus 306 ~P~liF~p~I~~~eq~a~~lk~~~---------------------------------~~~~i~~Vhs~--d~~R~EkV~~ 350 (441)
T COG4098 306 RPVLIFFPEIETMEQVAAALKKKL---------------------------------PKETIASVHSE--DQHRKEKVEA 350 (441)
T ss_pred CcEEEEecchHHHHHHHHHHHhhC---------------------------------Cccceeeeecc--CccHHHHHHH
Confidence 999999999999988886663221 12246778876 4678999999
Q ss_pred HhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|++|++++||+|.+++||+++|.+.|+|.|.. | .-++.+.++|++||+||.-....|.++.|-....
T Consensus 351 fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae------h--~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 351 FRDGKITLLITTTILERGVTFPNVDVFVLGAE------H--RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred HHcCceEEEEEeehhhcccccccceEEEecCC------c--ccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999999999999999999999999986543 2 2367889999999999986556677776655443
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-23 Score=235.61 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=189.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCC---CCcEEEEEcCCcccc--hhhc-cCCcEEEEChhhHHHHHhhhcccccccc
Q 000129 1391 MRAVYIAPLEALAKERYRDWEIKFGQG---LGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (2114)
Q Consensus 1391 ~k~l~I~Ptr~La~q~~~~~~~~f~~~---~g~~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (2114)
+++|++-|.|+|+.|+++.+. .|... ..++...+.|+.... .+.+ ...+|+|+||++++.++.. ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 689999999999999999766 45433 133433455544332 2233 4459999999999988765 4557889
Q ss_pred eeEEEecccccccCCCCchHHHHHHHHH----HHHhhcCCCceEEEEcccCCCh--hHHH-------HHhcCCCCc----
Q 000129 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMR----YIASQVENKIRIVALSTSLANA--KDLG-------EWIGATSHG---- 1527 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~g~~le~i~srl~----~i~~~~~~~~riV~lSATl~n~--~dla-------~wl~~~~~~---- 1527 (2114)
++++|+||++.+.+.. |...+.|+. .+.+. +..+|.+.+|||+.-. ..++ .|.......
T Consensus 364 crFlvlDead~lL~qg---y~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQG---YDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eEEEEecchhhhhhcc---cHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 9999999999887543 333444443 33221 3578999999998542 1222 333222111
Q ss_pred -eeecCCCCCc--------c--CcEE---E----E-ecccccchHHHHHhcCHH--HHHHHHHHhcCCCCEEEEeCChHH
Q 000129 1528 -LFNFPPGVRP--------V--PLEI---H----I-QGVDITNFEARMQAMTKP--TFTAIVQHAKNEKPALVFVPSRKY 1586 (2114)
Q Consensus 1528 -~~~f~~~~rp--------v--~l~~---~----~-~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~LVFv~sr~~ 1586 (2114)
+..+.....| . +++. + + .+...+...+....+.+. ...++.++ ...++||||.|+..
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQD 517 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEecccc
Confidence 1111000000 0 0000 0 0 000001111111111111 12223332 45689999999999
Q ss_pred HHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 000129 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2114)
Q Consensus 1587 a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT 1666 (2114)
|..+-+.+.+... -.+.+..+|++..+.+|+.-++.|+.+.++.||||
T Consensus 518 cDnLer~~~qkgg--------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict 565 (725)
T KOG0349|consen 518 CDNLERMMNQKGG--------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT 565 (725)
T ss_pred chHHHHHHHHcCC--------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEe
Confidence 9887766643221 13458889999999999999999999999999999
Q ss_pred CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1667 ~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++++||+|+.++-++| +...|-....|+||+||+||+ .+.|.++.++....+.
T Consensus 566 dvaargldi~g~p~~i----------nvtlpd~k~nyvhrigrvgra--ermglaislvat~~ek 618 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMI----------NVTLPDDKTNYVHRIGRVGRA--ERMGLAISLVATVPEK 618 (725)
T ss_pred hhhhccccccCCceEE----------EEecCcccchhhhhhhccchh--hhcceeEEEeeccchh
Confidence 9999999999999999 777888999999999999998 7899999988765443
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=247.25 Aligned_cols=296 Identities=21% Similarity=0.282 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
...|+++|.+++..+... ....++++|||+|||.+++..+-... .+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc--------------CCEEEEECcHHHHHHHHHH
Confidence 347999999999998874 56699999999999999977665431 1499999999999999988
Q ss_pred HHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhc-cCCCcccccccEEEEecccccccCCchhHHHHHH
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~-~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (2114)
+.+.+.. +..++.+.|+...... ..|.|+|... +.+. .......+..++||+||||++.... +..+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~qt---l~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQT---LARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhHH---HhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 8776542 2346666665432221 5799999874 4443 1111233368999999999987432 232322
Q ss_pred HHHHHHhhcccccc-EEEEccccCChHH------HHHHHhccccCceEeec-------CCcccccceeEEEeeccCc---
Q 000129 649 RTVRQIETTKEHIR-LVGLSATLPNYED------VALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVKK--- 711 (2114)
Q Consensus 649 rl~~~~~~~~~~~r-iv~lSATlpn~~d------va~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~~--- 711 (2114)
.+ .... ++|||||.+ ..| +...++ ...+.+. ....|..+...........
T Consensus 169 ~~--------~~~~~~LGLTATp~-R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~ 235 (442)
T COG1061 169 LL--------SAAYPRLGLTATPE-REDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEERE 235 (442)
T ss_pred hh--------hcccceeeeccCce-eecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHH
Confidence 22 1223 899999965 222 222221 0011111 0111111111111000000
Q ss_pred ---hhHHH-------------------HHhhH----HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccccc
Q 000129 712 ---PLQRF-------------------QLMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765 (2114)
Q Consensus 712 ---~~~~~-------------------~~~~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~ 765 (2114)
...+. ...+. .+...+..+..+.+++||+.+...+..++..+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~-------- 307 (442)
T COG1061 236 YAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG-------- 307 (442)
T ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC--------
Confidence 00000 00011 111112222245699999999999999988775422
Q ss_pred ccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEec
Q 000129 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG 845 (2114)
Q Consensus 766 ~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (2114)
++....+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 308 ------------------------------~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~- 356 (442)
T COG1061 308 ------------------------------IVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII- 356 (442)
T ss_pred ------------------------------ceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE-
Confidence 1345689999999999999999999999999999999999999999996
Q ss_pred ceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 846 ~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
-.|.+ |...|+||+||.-|+
T Consensus 357 ---~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 ---LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred ---eCCCC------cHHHHHHHhhhhccC
Confidence 55533 899999999999996
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-21 Score=215.23 Aligned_cols=311 Identities=22% Similarity=0.283 Sum_probs=207.4
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|++.|+.+-..++ ...+.+||.|-||||||....-.|-..+.++ .++.+.+|....|-|.+.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-----------CeEEEecCcccchHHHHHHHH
Confidence 89999998877654 4567799999999999998766666666543 379999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
..|. ++.+..++|+..... .++++|+|... +.|. -+.++++||||+|-..-.-.+.+...+...
T Consensus 166 ~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a- 229 (441)
T COG4098 166 QAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA- 229 (441)
T ss_pred Hhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHH------HhhccEEEEeccccccccCCHHHHHHHHHh-
Confidence 9876 567888999865433 37899998774 3332 234799999999976543445555444433
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCc--ccccceeEEEeeccCchhHHHHHhhHHHHHHHHH
Q 000129 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA 729 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 729 (2114)
....--+|.||||-++ .+.+-+... ..........| +|.|+...+....-.+...+ +.+...++..+.+
T Consensus 230 -----rk~~g~~IylTATp~k--~l~r~~~~g-~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lek 300 (441)
T COG4098 230 -----RKKEGATIYLTATPTK--KLERKILKG-NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEK 300 (441)
T ss_pred -----hcccCceEEEecCChH--HHHHHhhhC-CeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHH
Confidence 2345567999999553 222222110 00111122222 23333322211111111111 1122233444444
Q ss_pred HhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 730 VAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 730 ~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+.. +.|++||+++....+++|..|+..... ..++..|+. ..+
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~~ 343 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQH 343 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--Ccc
Confidence 443 679999999999999999988654211 124555664 467
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEc
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2114)
|.+..+.|++|++++|++|.+|+|||.+|.++|.|- +.+. .-++.+.++|++||+||.---..|..+.+-
T Consensus 344 R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-----gaeh---~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 344 RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-----GAEH---RVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred HHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-----cCCc---ccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 888999999999999999999999999999999884 3332 235788999999999996433446655553
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=244.24 Aligned_cols=299 Identities=16% Similarity=0.181 Sum_probs=195.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~---~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
...++++|.+++.++.+. .+..++++|||+|||+++..++- .+.. +++||||+++|+.|+++.+...+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~~-------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELKR-------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-HhcC-------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 346999999999999874 66699999999999999966554 2222 599999999999999988775544
Q ss_pred CCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~ 1495 (2114)
. ...++.+.|+..... ...|.|+|...+...- ..........++||+||||++.... +..+...+
T Consensus 106 ~--~~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~---- 170 (442)
T COG1061 106 L--NDEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL---- 170 (442)
T ss_pred C--ccccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh----
Confidence 2 234666666544321 1579999987754321 0011123369999999999997543 22222221
Q ss_pred hhcCCCce-EEEEcccCCChh-----HHHHHhcCCCCceeecC-------CCCCccCcEEEEecccccc------hH---
Q 000129 1496 SQVENKIR-IVALSTSLANAK-----DLGEWIGATSHGLFNFP-------PGVRPVPLEIHIQGVDITN------FE--- 1553 (2114)
Q Consensus 1496 ~~~~~~~r-iV~lSATl~n~~-----dla~wl~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~~------~~--- 1553 (2114)
. ... ++|||||++..+ ++...+| ..++.+. ....|.............. ..
T Consensus 171 ---~-~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 171 ---S-AAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred ---h-cccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 1 233 899999986433 3444444 1222222 1111211111111011000 00
Q ss_pred ----------------HHHHhcCHHHHHHHHHHhc---CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcc
Q 000129 1554 ----------------ARMQAMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614 (2114)
Q Consensus 1554 ----------------~~~~~~~~~~~~~i~~~l~---~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~ 1614 (2114)
.............+...+. .+.+++||+.+..++..++..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------ 305 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------ 305 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC------------------
Confidence 0011111111222222222 467999999999999988866521
Q ss_pred cchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCc
Q 000129 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2114)
Q Consensus 1615 ~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~ 1694 (2114)
..++..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|+ .
T Consensus 306 ------------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----------~ 357 (442)
T COG1061 306 ------------------PGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----------L 357 (442)
T ss_pred ------------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE----------e
Confidence 111678899999999999999999999999999999999999999999883 2
Q ss_pred CCCCCHhHHHHhHcccCCC
Q 000129 1695 HTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~ 1713 (2114)
...-|...|+||+||.-|+
T Consensus 358 ~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 358 RPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCcHHHHHHHhhhhccC
Confidence 2356889999999999996
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=250.66 Aligned_cols=307 Identities=20% Similarity=0.279 Sum_probs=223.3
Q ss_pred CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.-|+=|..||..+... .. +-||||.-|-|||.+|+-+++.....+ .+|.+++||.-||+|.+++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------KQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------KQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------CeEEEEcccHHhHHHHHHH
Confidence 6799999999988653 22 469999999999999999999988754 4899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
|+++|..++++|..++-=.+...+. .+..+|||+|.- ++.+ ...+++++|+||||-|+.+ -.
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~k---dv~FkdLGLlIIDEEqRFG----Vk 731 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSK---DVKFKDLGLLIIDEEQRFG----VK 731 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCC---CcEEecCCeEEEechhhcC----cc
Confidence 9999999999999987644433221 357899999975 2222 2567889999999999864 22
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHH-hccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhH
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l-~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (2114)
-. ..+.....++-++-|||| |=+..+.--+ +.. .-.+.. .+.....|++- |+. ..+. .
T Consensus 732 ~K-------EkLK~Lr~~VDvLTLSAT-PIPRTL~Msm~GiR-dlSvI~-TPP~~R~pV~T-~V~--~~d~--------~ 790 (1139)
T COG1197 732 HK-------EKLKELRANVDVLTLSAT-PIPRTLNMSLSGIR-DLSVIA-TPPEDRLPVKT-FVS--EYDD--------L 790 (1139)
T ss_pred HH-------HHHHHHhccCcEEEeeCC-CCcchHHHHHhcch-hhhhcc-CCCCCCcceEE-EEe--cCCh--------H
Confidence 22 122334578999999999 4333333222 211 100111 11111122222 221 1111 1
Q ss_pred HHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEe
Q 000129 722 LCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (2114)
Q Consensus 722 ~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~h 800 (2114)
.+.+.+ .+..+++|+-.-+|..+..++.+..|++...+ ..|++-
T Consensus 791 ~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE-----------------------------------arI~va 835 (1139)
T COG1197 791 LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE-----------------------------------ARIAVA 835 (1139)
T ss_pred HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc-----------------------------------eEEEEe
Confidence 122222 34566899998899999999999998875432 247888
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||.|+..+-+.++..|-+|+.+|||||.+.+.|||+|+.+.+|- .+... +..+++.|.-||.||.. ..|
T Consensus 836 HGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD~-----fGLsQLyQLRGRVGRS~--~~A 904 (1139)
T COG1197 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSN--KQA 904 (1139)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----ecccc-----ccHHHHHHhccccCCcc--ceE
Confidence 99999999999999999999999999999999999999987663 34333 58999999999999964 789
Q ss_pred EEEEEcCCCc
Q 000129 881 EGIIITGHSE 890 (2114)
Q Consensus 881 ~~iil~~~~e 890 (2114)
.||+++.+.+
T Consensus 905 YAYfl~p~~k 914 (1139)
T COG1197 905 YAYFLYPPQK 914 (1139)
T ss_pred EEEEeecCcc
Confidence 9999998754
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=249.67 Aligned_cols=373 Identities=23% Similarity=0.233 Sum_probs=260.4
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
...+|+-|..++..+..+ ....|+.+.||||||.+|+-+|-..+.+++ .+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-----------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-----------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-----------EEEEEeccccchHHHHHH
Confidence 347899999999988766 467999999999999999999999988753 799999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc--cCCc
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRG 640 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg 640 (2114)
|+.+|+ .+|.+++++.+...+. .++..|+|+| ++.-+..++++++|||||-|--. ...+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999874 7899999887655432 3678999999 44456778999999999999542 2344
Q ss_pred hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccc-cceeEEEeeccCchhHHHHHh
Q 000129 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 641 ~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
+.+. +|-+...+....++.+|+-||| |..+........ ....+.+...+... +....++.......... ..+
T Consensus 333 prYh---ARdvA~~Ra~~~~~pvvLgSAT-PSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~l 405 (730)
T COG1198 333 PRYH---ARDVAVLRAKKENAPVVLGSAT-PSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSL 405 (730)
T ss_pred CCcC---HHHHHHHHHHHhCCCEEEecCC-CCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccC-ccC
Confidence 4443 2333334455678999999999 665554444221 11233344433322 33344444332221111 014
Q ss_pred hHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc----------cCc--
Q 000129 720 NDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM----------VKS-- 786 (2114)
Q Consensus 720 ~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~----------~~~-- 786 (2114)
...+++.+.+... +.|+|+|+|.|..+-.+.+.=+..-..|..+...+..+.......|..|.. |..
T Consensus 406 S~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 406 SPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 5666677766655 779999999999887766655555556666655555554444444544432 221
Q ss_pred ------------chhhhhcc-CceEEecCCCCHHH--HHHHHHHHhCCCceEEEechHhhhhcCCCceEE--EEecceec
Q 000129 787 ------------NDLKDLLP-YGFAIHHAGMTRGD--RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIY 849 (2114)
Q Consensus 787 ------------~~L~~ll~-~gv~~hHagl~~~~--R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~y 849 (2114)
+.|+.++| ..|...-++.+... -+..++.|.+|+++|||.|..++.|.|+|+++. |++.+...
T Consensus 486 L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L 565 (730)
T COG1198 486 LRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL 565 (730)
T ss_pred eEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh
Confidence 34555553 45555656555433 356788999999999999999999999999997 45544444
Q ss_pred cCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 850 NPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 850 d~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
..+..|..|-..+-+.|-+|||||.+ ..|.++|.|..++...+..+
T Consensus 566 ~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 566 GSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred cCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHH
Confidence 44455667788899999999999965 78999999998885554433
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=228.94 Aligned_cols=288 Identities=17% Similarity=0.241 Sum_probs=184.5
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHH---hhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccc
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSN---RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~---~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~ 622 (2114)
+.+++|++-|.++|+.|....+.+ ......++-..+.|+.....+ ....++|+|+||++++-...+. ...+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g--~~~lt 362 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG--LVTLT 362 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc--ceeee
Confidence 456899999999999999996554 333223444456665544332 3468999999999985444332 25678
Q ss_pred cccEEEEecccccccCCchhHHHHHHHHHHHHhhc---cccccEEEEccccCCh--HHHHH-------HHhccccC----
Q 000129 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT---KEHIRLVGLSATLPNY--EDVAL-------FLRVNLEK---- 686 (2114)
Q Consensus 623 ~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~---~~~~riv~lSATlpn~--~dva~-------~l~~~~~~---- 686 (2114)
.++++++||++.++. ..+...+.|+..++... ....|.+.+|||+.-. ..+++ |.......
T Consensus 363 ~crFlvlDead~lL~---qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLG---QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eeEEEEecchhhhhh---cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 899999999999874 33455566665544433 3467889999998632 12222 22111000
Q ss_pred ceEe--------ecCCcccc---------cceeEEEe--eccCchhHHHHHh-hHHHHHHHHHHhCCCeEEEEecChHHH
Q 000129 687 GLFY--------FDNSYRPV---------PLSQQYIG--IQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSRKET 746 (2114)
Q Consensus 687 ~~~~--------f~~~~rpv---------~l~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vLVFv~sr~~~ 746 (2114)
.+.. .+.++... +-...... ............+ .+.+...+.++ ...++||||.|+..|
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dc 518 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDC 518 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccc
Confidence 0000 00111000 00000000 0001111111111 11122222222 256899999999999
Q ss_pred HHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe
Q 000129 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (2114)
Q Consensus 747 ~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa 826 (2114)
..+-+++.+.+-.. +.....||...+.+|..-++.|+.+..+.|||
T Consensus 519 DnLer~~~qkgg~~----------------------------------~scvclhgDrkP~Erk~nle~Fkk~dvkflic 564 (725)
T KOG0349|consen 519 DNLERMMNQKGGKH----------------------------------YSCVCLHGDRKPDERKANLESFKKFDVKFLIC 564 (725)
T ss_pred hHHHHHHHHcCCcc----------------------------------ceeEEEecCCChhHHHHHHHhhhhcCeEEEEE
Confidence 99999998765321 23456799999999999999999999999999
Q ss_pred chHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 827 T~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|+++|||+|+..+-++|+-|.|-+.. .|+||+||.||+- .-|.+|.++..
T Consensus 565 tdvaargldi~g~p~~invtlpd~k~----------nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTLPDDKT----------NYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred ehhhhccccccCCceEEEEecCcccc----------hhhhhhhccchhh--hcceeEEEeec
Confidence 99999999999999999987776543 5999999999964 67888877543
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=249.03 Aligned_cols=327 Identities=14% Similarity=0.129 Sum_probs=195.5
Q ss_pred CCCHHHHHHHHHHH----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.++++|.+|+..+. ++.++++|++|||||||.++...+.+.+.. ...+ ++|+|+|+++|+.|..+.|+. ++.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~~-~~~ 488 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFKD-TKI 488 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHHh-ccc
Confidence 58999999998875 355679999999999999875555444433 3334 999999999999999999884 432
Q ss_pred CCCcEEEEEcCCccc-chhhccCCcEEEEChhhHHHHHhhhc---ccccccceeEEEecccccccC------C---CCch
Q 000129 1417 GLGMRVVELTGETAM-DLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG------Q---GGPV 1483 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~-~~~~l~~~~IIV~TPe~l~~l~r~~~---~~~~l~~v~liIiDEaH~l~~------~---~g~~ 1483 (2114)
..+..+..+.+-... +...-..++|+|+|.+++...+.... ....+..+++||+||||+-.. . ....
T Consensus 489 ~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 489 EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 112121111111100 11111346999999998765432211 113567899999999997421 0 1111
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecC--------CCCC-ccCcEEEEe--ccc--c-
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFP--------PGVR-PVPLEIHIQ--GVD--I- 1549 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~--------~~~r-pv~l~~~~~--~~~--~- 1549 (2114)
.....+..+.+.... +...||||||+.. ...+++|... ..|.+. ..+. |+.+...+. +.. .
T Consensus 569 ~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~pv-~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 569 QLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGEPV-YTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCCee-EEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 122345555555433 3578999999852 3455566321 111110 0000 111111100 000 0
Q ss_pred ---------------cchHH----HHHhcC---------HHHHHHHHHHhc--CCCCEEEEeCChHHHHHHHHHHHHhhc
Q 000129 1550 ---------------TNFEA----RMQAMT---------KPTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSS 1599 (2114)
Q Consensus 1550 ---------------~~~~~----~~~~~~---------~~~~~~i~~~l~--~~~~~LVFv~sr~~a~~la~~L~~~~~ 1599 (2114)
..... ....+. +.+...+..++. ..+++||||.++.+|+.++..|.....
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 00000 000011 111222333332 236899999999999988877754321
Q ss_pred cCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc-eEEEecCccccccCCCCc
Q 000129 1600 MDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI-KVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i-~VLVaT~~la~Gvdip~~ 1678 (2114)
... .......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.+
T Consensus 724 ~~~--------------------------~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 724 KKY--------------------------GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred hhc--------------------------CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 000 0000123556888875 56789999999987 799999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
.+|| ....+.|...|+||+||+.|..
T Consensus 776 ~~vV----------f~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLV----------FLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEE----------EecCCCCHHHHHHHHhhhccCC
Confidence 9888 4556689999999999999963
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=236.30 Aligned_cols=324 Identities=19% Similarity=0.213 Sum_probs=193.1
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.|.|+|..+...++.. ...+|+.-.+|-|||..+.+.+-..+..+. ..+++||+|. +|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6999999998876654 346999999999999999776665554432 2279999997 8999999999876
Q ss_pred hccCCcEEEEEeCCCccC-----hhhhccceEEEcCHhHHHHHHhcc--CCCcccccccEEEEeccccccc--CCchhHH
Q 000129 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE 644 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~-----~~~~~~~~IiV~TPek~d~l~r~~--~~~~~l~~v~liIiDEaH~l~d--~rg~~le 644 (2114)
| ++.+..+.++.... .......+++|+|.+.+ .+.. .....-...++||+||||++.. ......-
T Consensus 222 F---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 F---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred h---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 6 34455444432110 12233578999998753 2211 0001123579999999999863 1111111
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCC--hHH---------------HHHHHh-----------------ccc-c----
Q 000129 645 SIVARTVRQIETTKEHIRLVGLSATLPN--YED---------------VALFLR-----------------VNL-E---- 685 (2114)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riv~lSATlpn--~~d---------------va~~l~-----------------~~~-~---- 685 (2114)
..+..+ . .....+++||||.-. .++ ...|.. ... .
T Consensus 296 ~~v~~L----a--~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~ 369 (956)
T PRK04914 296 QVVEQL----A--EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDAL 369 (956)
T ss_pred HHHHHH----h--hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHH
Confidence 222222 1 123467999999321 111 111110 000 0
Q ss_pred ------------------------------------------CceEeecCCcccc---c-ceeEEEeeccCchhHH----
Q 000129 686 ------------------------------------------KGLFYFDNSYRPV---P-LSQQYIGIQVKKPLQR---- 715 (2114)
Q Consensus 686 ------------------------------------------~~~~~f~~~~rpv---~-l~~~~~~~~~~~~~~~---- 715 (2114)
.+-+.|.....-+ | -..+.+.+........
T Consensus 370 ~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~ 449 (956)
T PRK04914 370 NALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKV 449 (956)
T ss_pred HHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHH
Confidence 0000111100000 0 0000011110000000
Q ss_pred ---------------HHHh------------hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH-hhccccccccc
Q 000129 716 ---------------FQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFL 767 (2114)
Q Consensus 716 ---------------~~~~------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~l~~~l 767 (2114)
+..+ .+.+.+ +.+...+.++||||+++..+..++..|+.. +
T Consensus 450 ~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~-~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---------- 518 (956)
T PRK04914 450 SLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLID-FLKSHRSEKVLVICAKAATALQLEQALREREG---------- 518 (956)
T ss_pred hHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHH-HHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC----------
Confidence 0000 001111 222233679999999999999999988542 2
Q ss_pred ccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCC--CceEEEechHhhhhcCCCceEEEEec
Q 000129 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (2114)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g--~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (2114)
..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||++
T Consensus 519 ---------------------------i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 519 ---------------------------IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred ---------------------------eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 2245679999999999999999974 69999999999999999999999996
Q ss_pred ceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 846 ~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+.|++| ..|.||+||+||.|..+.-..++.+..
T Consensus 572 DlP~nP----------~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 572 DLPFNP----------DLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred cCCCCH----------HHHHHHhcccccCCCCceEEEEEccCC
Confidence 555554 579999999999985433333333333
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=247.97 Aligned_cols=324 Identities=18% Similarity=0.225 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.++++|.+|+..+. .+.++.|+++|||||||.+++..+.+.+... ...++|+++|+++|+.|..+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHHH
Confidence 58999999998765 3456799999999999998765554443322 1238999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH-HHHHhcc--CCCcccccccEEEEeccccccc-C--Cc---
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW-DIITRKS--GDRTYTQLVKLLIIDEIHLLHD-N--RG--- 640 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~-d~l~r~~--~~~~~l~~v~liIiDEaH~l~d-~--rg--- 640 (2114)
.......+..+....+-..+... .....+|+|+|..++ ..+.... .....+..+++|||||||+-.. + .+
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred HhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 87532222122112211111111 123579999999986 2222211 1113467789999999998421 0 00
Q ss_pred ---hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeec-------C---Ccc-cccceeEE--
Q 000129 641 ---PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------N---SYR-PVPLSQQY-- 704 (2114)
Q Consensus 641 ---~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~-------~---~~r-pv~l~~~~-- 704 (2114)
.............+.. .+...|||||| |.. ....+++. +++.++ + .+. |......+
T Consensus 564 ~~~~~~~~~~~~yr~iL~y--FdA~~IGLTAT-P~r-~t~~~FG~----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~ 635 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDY--FDAVKIGLTAT-PAL-HTTEIFGE----PVYTYSYREAVIDGYLIDHEPPIRIETRLSQ 635 (1123)
T ss_pred hccchhhhHHHHHHHHHhh--cCccEEEEecC-Ccc-chhHHhCC----eeEEeeHHHHHhcCCcccCcCCEEEEEEecc
Confidence 0001112222222221 13567999999 432 22333332 111100 0 000 11110000
Q ss_pred Eeec--cC---------c-h------hH----HHHH---------hhHHHHHHHHHHh---CCCeEEEEecChHHHHHHH
Q 000129 705 IGIQ--VK---------K-P------LQ----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKTA 750 (2114)
Q Consensus 705 ~~~~--~~---------~-~------~~----~~~~---------~~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a 750 (2114)
.|+. .. . . .. .... .++.+.+.+.++. ..+++||||.++..|..++
T Consensus 636 ~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 636 EGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred ccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 0000 00 0 0 00 0001 1112222233322 2479999999999999999
Q ss_pred HHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc-eEEEechH
Q 000129 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTAT 829 (2114)
Q Consensus 751 ~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i-~VLVaT~t 829 (2114)
..|.+....... ..-...+...||+++ ++..+++.|+++.. +|+|++++
T Consensus 716 ~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdm 765 (1123)
T PRK11448 716 RLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDL 765 (1123)
T ss_pred HHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecc
Confidence 988764311000 000112344577765 56789999999887 79999999
Q ss_pred hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
+.+|+|+|.+.+||. +.|.. |...|+||+||+.|.-
T Consensus 766 L~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 766 LTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLC 801 (1123)
T ss_pred cccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCC
Confidence 999999999999986 56655 8889999999999964
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=208.86 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=143.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|+.+...+ .|++.|+++|.++++.+++ ++|++++||||+|||++++++++..+..... ..+++++|++|+
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCC
Confidence 344555555 5899999999999999887 4679999999999999999999998876521 134689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hh-ccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~-~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+...+..+....++++..++|+...... .. .+++|+|+||+++..+.+... ..+++++++|+||+|.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhh
Confidence 9999999999998877778999999998765432 12 378999999999855444433 567889999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
+ .++..+..++.++ ....+++++|||++ .++..++...
T Consensus 157 ~~~~~~~~~~~~~~l-------~~~~~~~~~SAT~~--~~~~~~~~~~ 195 (203)
T cd00268 157 DMGFEDQIREILKLL-------PKDRQTLLFSATMP--KEVRDLARKF 195 (203)
T ss_pred ccChHHHHHHHHHhC-------CcccEEEEEeccCC--HHHHHHHHHH
Confidence 6 4566666555433 45899999999998 4555655543
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-19 Score=228.74 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|--.--. ++.+ -|..++||+|||++|.+|++..+..+ ..+.+++|++.||.|.++.+..++
T Consensus 82 ~~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 456677655433 3333 48899999999999999999776543 258999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccCC---CcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~~---~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.++|+.+...+. .-.++|+|+||+++ |.+...... ......+.++||||||.+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 99999999999987755432 34789999999995 666554221 112367899999999976
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=230.17 Aligned_cols=326 Identities=16% Similarity=0.176 Sum_probs=199.3
Q ss_pred CCCCHHHHHHHHHHHc-CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~-~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
-.|.|+|..+...++. ....+|++-+.|-|||+.+.+.+-..+.. ...+ ++|||||. .|+.|+..++.++|+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~--- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN--- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC---
Confidence 3699999999888764 23469999999999999996665554444 3334 89999997 899999999987775
Q ss_pred CcEEEEEcCCcccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHH
Q 000129 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMR 1492 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~ 1492 (2114)
+.+..+.++.... ...+...+++|+|.+.+..-- .+.....-...++||+||||++... ..+.- ....++
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~--~y~~v~ 299 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-QRLEQALAAEWDLLVVDEAHHLVWSEEAPSR--EYQVVE 299 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-HHHHHHhhcCCCEEEEechhhhccCCCCcCH--HHHHHH
Confidence 3444444432111 123345689999977643211 1111111236899999999999632 11211 122333
Q ss_pred HHHhhcCCCceEEEEcccCCC--hhHH---------------HHHhc-----------------CCC-C--------ce-
Q 000129 1493 YIASQVENKIRIVALSTSLAN--AKDL---------------GEWIG-----------------ATS-H--------GL- 1528 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n--~~dl---------------a~wl~-----------------~~~-~--------~~- 1528 (2114)
.+.. ....+++||||+-. ..++ ..|.. ... . .+
T Consensus 300 ~La~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 300 QLAE---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHhh---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 3322 23468999999853 1111 11110 000 0 00
Q ss_pred --------------------------------------eecCCC---CCccC-cEEEEeccccc-chHHHH---------
Q 000129 1529 --------------------------------------FNFPPG---VRPVP-LEIHIQGVDIT-NFEARM--------- 1556 (2114)
Q Consensus 1529 --------------------------------------~~f~~~---~rpv~-l~~~~~~~~~~-~~~~~~--------- 1556 (2114)
+-|... +...| -..+......+ .+....
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 000000 00000 00000001100 010000
Q ss_pred ---------Hh-------c-CHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1557 ---------QA-------M-TKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1557 ---------~~-------~-~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
.. . ..+....+...+ ....++||||+++..+..++..|..
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~--------------------- 515 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRE--------------------- 515 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhh---------------------
Confidence 00 0 011122222222 2357899999999999888865522
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC--CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcC
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG--KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAH 1695 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g--~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~ 1695 (2114)
..+..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+.+|| +++
T Consensus 516 -------------~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----------nfD 572 (956)
T PRK04914 516 -------------REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----------LFD 572 (956)
T ss_pred -------------ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----------Eec
Confidence 1244578899999999999999999984 699999999999999999999999 899
Q ss_pred CCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1696 TDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1696 ~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
.|.++..|.||+||+||.| ..|.+.+++
T Consensus 573 lP~nP~~~eQRIGR~~RiG--Q~~~V~i~~ 600 (956)
T PRK04914 573 LPFNPDLLEQRIGRLDRIG--QKHDIQIHV 600 (956)
T ss_pred CCCCHHHHHHHhcccccCC--CCceEEEEE
Confidence 9999999999999999985 444444443
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=225.23 Aligned_cols=352 Identities=17% Similarity=0.213 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|--.--. ++.+. |....||+|||+++.+|++.....+. .+-+++|+--||.+-++.+..++
T Consensus 80 ~~~dvQlig~l~-l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~-----------~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIV-LHEGN--IAEMKTGEGKTLTATLPVYLNALTGK-----------GVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHH-HhcCC--cccccCCCCCcHHHHHHHHHHHHcCC-----------CeEEEeccHHHHHhhHHHHHHHH
Confidence 577888776554 44333 88999999999999999988877653 68899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEecccccc-c-CCch-----
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP----- 641 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~----- 641 (2114)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|.-+. ........+.+.||||||.++ | .|.|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999865543 3456899999999875 5444332 122234567899999999652 2 1211
Q ss_pred ---h---HHHHHHHHHHHHhhc----------------cccccEEEEccc----------cCCh---H--HHHHHHhccc
Q 000129 642 ---V---LESIVARTVRQIETT----------------KEHIRLVGLSAT----------LPNY---E--DVALFLRVNL 684 (2114)
Q Consensus 642 ---~---le~iv~rl~~~~~~~----------------~~~~riv~lSAT----------lpn~---~--dva~~l~~~~ 684 (2114)
. +-..+.++...+... ....+.+.++.. ++|. + .+..|+....
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 1 111122222211110 011222333310 1210 0 1122221100
Q ss_pred ---------------cCceEeecCC-ccccc-------------------------------------cee---------
Q 000129 685 ---------------EKGLFYFDNS-YRPVP-------------------------------------LSQ--------- 702 (2114)
Q Consensus 685 ---------------~~~~~~f~~~-~rpv~-------------------------------------l~~--------- 702 (2114)
...+..++.. -|..+ +..
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 0001111000 00000 000
Q ss_pred -------------EEEeeccCch--------------hHHHHHhhHHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHH
Q 000129 703 -------------QYIGIQVKKP--------------LQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754 (2114)
Q Consensus 703 -------------~~~~~~~~~~--------------~~~~~~~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2114)
.++.++..++ ..+.. .+.+.+. .+..+.|+||||+|+..++.++..|.
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~----al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFN----AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHH----HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0111111111 11111 1222232 23457899999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhc
Q 000129 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2114)
Q Consensus 755 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2114)
..+... ..+||.+...++..+.++++.|. |+|||++++||.
T Consensus 462 ~~gi~~-------------------------------------~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGt 502 (796)
T PRK12906 462 EAGIPH-------------------------------------AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGT 502 (796)
T ss_pred HCCCCe-------------------------------------eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCC
Confidence 765432 45599999888888888888886 999999999999
Q ss_pred CCC---ceE-----EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc-HH------HHHHhh-
Q 000129 835 NLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-LR------YYLSLM- 898 (2114)
Q Consensus 835 dlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e-~~------~~~~ll- 898 (2114)
|++ ++. +||+ ++.+. |...+.|+.|||||.| .+|.+..+++-++ +- .+.+++
T Consensus 503 DI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~~ 570 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFLD 570 (796)
T ss_pred CCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHHH
Confidence 994 888 8998 55443 6778999999999988 7899988887653 11 122232
Q ss_pred -----cCCCcccchhhHhhHHH
Q 000129 899 -----NQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 899 -----~~~~pies~l~~~l~d~ 915 (2114)
....||++.+.....+.
T Consensus 571 ~~~~~~~~~~i~~~~~~~~i~~ 592 (796)
T PRK12906 571 RLGMNDDDQVIESRMITRQVES 592 (796)
T ss_pred HcCCCCCCCcccchHHHHHHHH
Confidence 33568888876654443
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=205.21 Aligned_cols=174 Identities=24% Similarity=0.372 Sum_probs=135.4
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
..++.+.. |+..|+++|.++++.+++ ++|++++||||+|||++|.++++..+......++++++|++|+++|+.|+.+
T Consensus 9 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~ 87 (203)
T cd00268 9 ELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAE 87 (203)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHH
Confidence 34445543 689999999999999998 5679999999999999999999999888421233499999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccc--hhhcc-CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.++. +....++++..++|+.... ...+. +++|+|+||+++..++.+. ...+.+++++|+||+|.+.+..
T Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~l~~lIvDE~h~~~~~~----- 159 (203)
T cd00268 88 VARK-LGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG--KLDLSKVKYLVLDEADRMLDMG----- 159 (203)
T ss_pred HHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--CCChhhCCEEEEeChHHhhccC-----
Confidence 9984 6555688999999987653 22333 6799999999998888763 3567899999999999987443
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1486 VIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
+...+..+...++.+.+++++|||+++
T Consensus 160 -~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 160 -FEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred -hHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 112222233334568999999999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=235.50 Aligned_cols=328 Identities=20% Similarity=0.248 Sum_probs=203.9
Q ss_pred CCHHHHHHHHHHHcC--CC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 496 LNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~--~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+.|..++..+... .. .+++.||||+|||.+++.+++..+..+.. ...+++|+.|+++++.++++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHHh
Confidence 488999999888754 23 68999999999999999999888766311 245899999999999999999998
Q ss_pred hhccCCcEEEEEeCCCccCh----hh-------------hccceEEEcCHhHHHHH-HhccCCCc-ccccccEEEEeccc
Q 000129 573 RLQMYDVKVRELSGDQTLTR----QQ-------------IEETQIIVTTPEKWDII-TRKSGDRT-YTQLVKLLIIDEIH 633 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~----~~-------------~~~~~IiV~TPek~d~l-~r~~~~~~-~l~~v~liIiDEaH 633 (2114)
.++..++....++|.....- .. ..-..++++||-.+-.. ........ ..-..+++|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 87654443332344322110 00 11234555666543221 11111110 00124789999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE-eecCCcccccceeEEEeeccCch
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF-YFDNSYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~-~f~~~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+.++. .-.++..++.... ..+.++|+||||+|. .+.+.+......+.. ..... .++..... .+.....
T Consensus 349 ~~~~~~---~~~~l~~~i~~l~--~~g~~ill~SATlP~--~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~-~~~~~~~ 418 (733)
T COG1203 349 LYADET---MLAALLALLEALA--EAGVPVLLMSATLPP--FLKEKLKKALGKGREVVENAK--FCPKEDEP-GLKRKER 418 (733)
T ss_pred hhcccc---hHHHHHHHHHHHH--hCCCCEEEEecCCCH--HHHHHHHHHHhcccceecccc--cccccccc-ccccccc
Confidence 998763 2222233333222 357889999999995 344444332222111 11111 11111100 0000000
Q ss_pred hHHHHHhhHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 713 LQRFQLMNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
..............+ .....+++++|-|||.+.|.+++..|++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--------------------------------- 465 (733)
T COG1203 419 VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--------------------------------- 465 (733)
T ss_pred hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---------------------------------
Confidence 000000000011112 2233478999999999999999999987542
Q ss_pred hccCceEEecCCCCHHHHHHHHHHH----hCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHh
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLF----GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F----~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2114)
.+..+||.++..+|...++.+ +.+...|+|||++.+.|||+. .+++|- ++. ++.+++||
T Consensus 466 ----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLIQR 528 (733)
T COG1203 466 ----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLIQR 528 (733)
T ss_pred ----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHHHH
Confidence 256679999999999888754 457889999999999999995 777773 332 56789999
Q ss_pred hcccCCCCCCCceEEEEEcCCCc
Q 000129 868 LGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
+||++|-|.+..|..++......
T Consensus 529 ~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 529 AGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHhhcccccCCceeEeecccC
Confidence 99999998777788888766543
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=198.11 Aligned_cols=158 Identities=30% Similarity=0.475 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000129 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (2114)
||+|.++++.++ ++++++++||||+|||+++++++++.+.... ..+++|++|+++|+.|+++++.+.+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeecccccccccccccccccc
Confidence 689999999988 5577999999999999999999999887652 238999999999999999999999888
Q ss_pred CCcEEEEEeCCCccChh---hh-ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHH
Q 000129 577 YDVKVRELSGDQTLTRQ---QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (2114)
Q Consensus 577 ~gi~v~~l~Gd~~~~~~---~~-~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~ 651 (2114)
.++++..++|+...... .. .+++|+|+||+++..+.+... ..+.++++|||||+|.+.+ .++..+..++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~- 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK--INISRLSLIVIDEAHHLSDETFRAMLKSILRRL- 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS--STGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccc--cccccceeeccCcccccccccHHHHHHHHHHHh-
Confidence 78899999998875422 12 469999999999855555432 2445599999999999987 4566555555443
Q ss_pred HHHhhccccccEEEEccccC
Q 000129 652 RQIETTKEHIRLVGLSATLP 671 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlp 671 (2114)
.. ..+.+++++|||++
T Consensus 148 ---~~-~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 148 ---KR-FKNIQIILLSATLP 163 (169)
T ss_dssp ---HT-TTTSEEEEEESSST
T ss_pred ---cC-CCCCcEEEEeeCCC
Confidence 22 23688999999987
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=194.14 Aligned_cols=158 Identities=30% Similarity=0.514 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v 1422 (2114)
||+|.++++.++ +++++++.||||||||+++.+++++.+.+. ..+ +++|++|+++|+.|+++++.+.+.. .+.++
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFSN-TNVRV 75 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTTT-TTSSE
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeecccccccccccccccccc-ccccc
Confidence 699999999999 467799999999999999999999998884 344 9999999999999999999965554 57889
Q ss_pred EEEcCCcccc---hhhc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1423 VELTGETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1423 ~~l~G~~~~~---~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
..++|+...+ ...+ ..++|+|+||+++..+++.+.. .+.++++||+||+|.+..+ .+..+..++.+++ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~----~ 149 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK----R 149 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH----T
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc----C
Confidence 9999987643 2233 4689999999999998887333 5666999999999999764 2333333333221 1
Q ss_pred cCCCceEEEEcccCC
Q 000129 1498 VENKIRIVALSTSLA 1512 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~ 1512 (2114)
..+.++|++|||++
T Consensus 150 -~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 -FKNIQIILLSATLP 163 (169)
T ss_dssp -TTTSEEEEEESSST
T ss_pred -CCCCcEEEEeeCCC
Confidence 23689999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=217.85 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=87.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh-hccC
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEK 1438 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~-~l~~ 1438 (2114)
-|..++||+|||++|.+|++..... +. .+++++|+++||.|.++.+. .+.+.+|++|+.++|+.+...+ ..-.
T Consensus 98 ~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~-~l~~~lGLtv~~i~gg~~~~~r~~~y~ 171 (896)
T PRK13104 98 NIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMK-PIYEFLGLTVGVIYPDMSHKEKQEAYK 171 (896)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHH-HHhcccCceEEEEeCCCCHHHHHHHhC
Confidence 4889999999999999999976654 33 68999999999999999887 5666679999999998765533 3336
Q ss_pred CcEEEEChhhH-HHHHhhhccc----ccccceeEEEeccccccc
Q 000129 1439 GQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~liIiDEaH~l~ 1477 (2114)
++|+|+||+++ ..+++..... ...+.+.++||||||.++
T Consensus 172 ~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 172 ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 79999999997 6666652111 123579999999999553
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=228.86 Aligned_cols=327 Identities=20% Similarity=0.229 Sum_probs=207.5
Q ss_pred CCHHHHHHHHHHHcC--CC-cEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1342 FNPIQTQVFTVLYNT--DD-NVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~--~~-nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
..+.|..++..+... .. .+++.||||+|||.+++.+.+..+... ...+ |++|+.|++.++.+++++++..++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~--r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKS--RVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccc--eEEEEccHHHHHHHHHHHHHhhhccc
Confidence 388999999987642 23 789999999999999988888777662 2233 99999999999999999999766543
Q ss_pred CCcEEEE-EcCCcccchh-----------------hccCCcEEEEChhhHHHHHhhhcccccc--cceeEEEeccccccc
Q 000129 1418 LGMRVVE-LTGETAMDLK-----------------LLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1418 ~g~~v~~-l~G~~~~~~~-----------------~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~liIiDEaH~l~ 1477 (2114)
..... ++|....... ...-..++++||-++....-.......+ -..+++|+||+|.+.
T Consensus 274 --~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 274 --SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred --ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 12222 3443222100 0011156666666654421111111111 235799999999997
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHH
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 1555 (2114)
++. .+..+..-+..+. ..+..+|++|||+|.. +.+...++.......+.. .-+..-+..+...........
T Consensus 352 ~~~--~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~ 424 (733)
T COG1203 352 DET--MLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVDVEDG 424 (733)
T ss_pred ccc--hHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchhhhhh
Confidence 663 3333333333332 3478999999999874 244444444332111100 000000000000000000000
Q ss_pred HHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000129 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2114)
Q Consensus 1556 ~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2114)
.. ......+...+..+++++|.|||...|..++..|.... . .
T Consensus 425 ~~---~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~----------------------------------~-~ 466 (733)
T COG1203 425 PQ---EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG----------------------------------P-K 466 (733)
T ss_pred hh---HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC----------------------------------C-C
Confidence 00 11223333445778999999999999999997774321 1 4
Q ss_pred eEeecCCCCHHHHHHHHHHHh----cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1636 VGYLHEGLNKTDQEVVSALFE----AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1636 V~~~H~~ls~~dR~~v~~~F~----~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
+..+||.+...+|...++.+. .+...|+|||++.+.|||+....+|- .+.|+.+++||+||++
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mIT-------------e~aPidSLIQR~GRv~ 533 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLIT-------------ELAPIDSLIQRAGRVN 533 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeee-------------cCCCHHHHHHHHHHHh
Confidence 899999999999998888654 56789999999999999999555443 5668999999999999
Q ss_pred CCCCCCceEEEEEeecCcH
Q 000129 1712 RPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~~ 1730 (2114)
|.|....|.++++......
T Consensus 534 R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 534 RHGKKENGKIYVYNDEERG 552 (733)
T ss_pred hcccccCCceeEeecccCC
Confidence 9875578888888776543
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=215.06 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+ .+ ..+-+++|+..||.|.++.+..+
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~G-----------~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNAL-TG-----------KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHH-cC-----------CCEEEEecCHHHHHHHHHHHHHH
Confidence 567778766543 4433 48899999999999999996 554 22 14679999999999999999999
Q ss_pred hccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
+..+|++|+.++|+.+...+. .-.++|+++||..+ |.+..+.. .....+.+.++||||||.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999999999987765432 34689999999997 55544331 1134577899999999976
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=206.98 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=108.7
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 492 g~~~l---~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
||..| +|+|.++++.++.+.+ +++.|+||+|||++|.+|++..+..+. .+++|+|++.||.|.++
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g~-----------~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTGK-----------PVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhcC-----------CeEEEeCCHHHHHHHHH
Confidence 67666 9999999998887755 999999999999999999998775431 37889999999999999
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccCCCc----ccccccEEEEecccccc
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~~~~----~l~~v~liIiDEaH~l~ 636 (2114)
.+..+.+.+|++|+.+.|+.+...+. .-.++|+|+||+++ |.+.++..... ..+.+.++||||||.++
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 99999988999999999998876543 33689999999998 66655432211 22456899999999763
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=211.64 Aligned_cols=331 Identities=15% Similarity=0.116 Sum_probs=203.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.++ |....||+|||+++.+|++-.... +. .+-+++|+.-||.+-+..+...|. .+|+
T Consensus 80 ~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~~~~-~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGELYR-WLGL 150 (796)
T ss_pred CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHHHHH-hcCC
Confidence 5666666554444 3233 889999999999999999877766 44 788999999999999998886555 4699
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhhh----cccccccceeEEEeccccccc-C-CC------Cc--hH
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG-G-QG------GP--VL 1484 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~liIiDEaH~l~-~-~~------g~--~l 1484 (2114)
+|+.++|+.+.. .+..-.++|+++|...+- ..+|.. ..........+.||||+|.++ + .+ |+ ..
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 999999987654 344557799999998763 233321 111234567899999999543 1 11 11 11
Q ss_pred HHHHHHHHHHHhhcCC-------------------CceEEEEcc----------cCCC---hh--HHHHHhcC-------
Q 000129 1485 EVIVSRMRYIASQVEN-------------------KIRIVALST----------SLAN---AK--DLGEWIGA------- 1523 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~-------------------~~riV~lSA----------Tl~n---~~--dla~wl~~------- 1523 (2114)
..+...+..+..++.. ..+.|.++. .++| .. .+..|+..
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 1122222222221111 122222221 0111 11 12233211
Q ss_pred ---CCCce------eecC-CCCCc-------------------cCcE------------------EEEecccccch----
Q 000129 1524 ---TSHGL------FNFP-PGVRP-------------------VPLE------------------IHIQGVDITNF---- 1552 (2114)
Q Consensus 1524 ---~~~~~------~~f~-~~~rp-------------------v~l~------------------~~~~~~~~~~~---- 1552 (2114)
....+ ..+. ...|. +++. ..+.|......
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 00000 0000 00000 0000 00111111000
Q ss_pred ------------------------HHHHH----hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcc
Q 000129 1553 ------------------------EARMQ----AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQ 1604 (2114)
Q Consensus 1553 ------------------------~~~~~----~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~ 1604 (2114)
..... .-.+.+...+......+.|+||||+|+..++.++..|...
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~------- 463 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA------- 463 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC-------
Confidence 00000 0011222333333357899999999999999998777431
Q ss_pred cccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC---CcE--
Q 000129 1605 KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT---AHL-- 1679 (2114)
Q Consensus 1605 ~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip---~~~-- 1679 (2114)
+.....+||++...++..+.+.++.|. |+|||++++||.|++ ++.
T Consensus 464 ----------------------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 464 ----------------------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred ----------------------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhh
Confidence 234678999999999999988888887 999999999999995 777
Q ss_pred ---EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1680 ---VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1680 ---vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|| +++.|.+...+.|+.|||||. |.+|.+..+++-.+
T Consensus 514 GGLhVI----------~te~pes~ri~~Ql~GRtGRq--G~~G~s~~~~sleD 554 (796)
T PRK12906 514 GGLAVI----------GTERHESRRIDNQLRGRSGRQ--GDPGSSRFYLSLED 554 (796)
T ss_pred CCcEEE----------eeecCCcHHHHHHHhhhhccC--CCCcceEEEEeccc
Confidence 898 788899999999999999998 78999998888764
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=209.32 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHH-HHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il-~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
.++++|--.--.+ +.+ -|..++||+|||++|.+|++ +.+ . +. .+-+++|+..||.|.++.+.. +.+.+|
T Consensus 81 ~~~dvQlig~l~L-~~G--~Iaem~TGeGKTLva~lpa~l~aL-~---G~--~V~IvTpn~yLA~rd~e~~~~-l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEG--KIAEMKTGEGKTLVATLPAYLNAL-T---GK--GVHVVTVNDYLAKRDAEWMGP-LYEFLG 150 (830)
T ss_pred CCCccHHHhhHHh-cCC--chhhhhcCCCcHHHHHHHHHHHHH-c---CC--CEEEEecCHHHHHHHHHHHHH-HHhhcC
Confidence 4556665444333 323 48899999999999999996 444 3 22 466999999999999998884 556679
Q ss_pred cEEEEEcCCcccchh-hccCCcEEEEChhhH-HHHHhhhccc----ccccceeEEEecccccc
Q 000129 1420 MRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~liIiDEaH~l 1476 (2114)
++|+.++|+.+...+ ..-.++|+++||..+ ..++|..... ...+.+.++||||||.+
T Consensus 151 lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 151 LSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999998776532 333579999999998 6677653211 23567899999999955
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=208.50 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--.-- +++.+ -|..++||.|||++|.+|++.....+. .+.+|+|+..||.+..+.+..++
T Consensus 82 ~~ydVQliGgl-~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~-----------~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGM-VLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK-----------GVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcch-HhcCC--ccccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEeCCHHHHHHHHHHHHHHH
Confidence 45566654433 23333 588999999999999999987765542 49999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChhhh-ccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~-~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~ 636 (2114)
..+|++|+.++|+.+...+.. -.++|+++||..+ |.|..+.. .......+.++||||||.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999877644433 3789999999996 66555421 12234678999999999764
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-16 Score=200.16 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=106.7
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1338 GFKHF---NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1338 gf~~~---~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
||..| +|+|.|+++.+..+.+ +++.++||+|||++|.+|++..+.. +. .+++|+|+++||.|.++.+. .+
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IVTpTrELA~Qdae~m~-~L 158 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLVTVNDYLAQRDCEWVG-SV 158 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEEeCCHHHHHHHHHHHH-HH
Confidence 67777 9999999999988655 9999999999999999999987765 22 47899999999999998887 56
Q ss_pred cCCCCcEEEEEcCCcccchh-hccCCcEEEEChhhH-HHHHhhhcccc-----cccceeEEEeccccccc
Q 000129 1415 GQGLGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQRK-----YVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~~-----~l~~v~liIiDEaH~l~ 1477 (2114)
.+.+|++++.+.|+.+...+ ..-.++|+||||+++ ..+++...-.. ..+.+.++||||||.+.
T Consensus 159 ~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 159 LRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 67789999999998876633 223589999999999 77777621111 12356899999999653
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=185.91 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=220.8
Q ss_pred cccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcC
Q 000129 1797 YYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSR 1876 (2114)
Q Consensus 1797 y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr 1876 (2114)
-.+.+.||.+|+..+....++..+|+++|.|.||..+ .| .-|-.-..-||++|++|
T Consensus 225 ~gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~----------------~p--------k~pk~~~ekll~dhlnr 280 (610)
T COG5407 225 VGVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRM----------------NP--------KGPKCTLEKLLGDHLNR 280 (610)
T ss_pred cceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHh----------------CC--------CCCchhHHHHHHHHHhH
Confidence 3567889999999998888899999999999998544 12 11223356689999998
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCC-CCccccCCCCCHHHHHHHHcCCCC
Q 000129 1877 QQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWER-DSMLLQLPHFMKDLAKRCQENPGK 1955 (2114)
Q Consensus 1877 ~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~-~s~L~QLP~i~~~~~~~l~~~~~~ 1955 (2114)
-.-. .+. ..+|+.++.-|++|+.+|++..+++.++..++.+.|||+||+.-+ ..+++||||.+.+.++++.-..
T Consensus 281 ~~s~-~fn--~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~-- 355 (610)
T COG5407 281 ARSV-EFN--EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRL-- 355 (610)
T ss_pred hhcc-cch--heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhh--
Confidence 6532 222 678999999999999999999999999999999999999999866 6789999999999999888777
Q ss_pred cccCHHHHhcCCHHHHHHHhc-CChHHHHHHHHHHhcCCceEE---EEEEeccccccCCCcEEEEEEE--EEcC------
Q 000129 1956 SIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDM---SFEVQDSENVRAGEDITLQVVL--ERDL------ 2023 (2114)
Q Consensus 1956 ~i~t~~dl~~~~~~~r~~ll~-~~~~~~~~i~~~~~~~P~i~v---~~~v~~~~~v~~g~~~~l~v~l--~r~~------ 2023 (2114)
|+++..|..+.+++....|+ +...++.++.++++.+|++.+ .|=|.++..|++++.--+..+. .-..
T Consensus 356 -I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~t 434 (610)
T COG5407 356 -IEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRT 434 (610)
T ss_pred -hhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCcccc
Confidence 99999999999999988887 888999999999999999876 5667777888888776444433 1100
Q ss_pred ---------C----------------CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecc----cccEEEEE
Q 000129 2024 ---------E----------------GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQ----RKSRVKLD 2074 (2114)
Q Consensus 2024 ---------~----------------~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~----~~~~~~l~ 2074 (2114)
+ +.++.+...||+||....-.||+.+.+++.+.++ |...++. ......++
T Consensus 435 s~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~I-ip~~Si~~v~K~~~d~Ri~ 513 (610)
T COG5407 435 SALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYI-IPGGSIATVSKVTLDRRIQ 513 (610)
T ss_pred cccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEE-eCCccccccchhhhhcccc
Confidence 0 0023447899999999999999999999987643 3333332 23346677
Q ss_pred EEecCCCCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2075 FAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2075 f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
|.+|+-.|+..+.+.+++-+|+|.+.--.+..-
T Consensus 514 ~dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~ 546 (610)
T COG5407 514 GDVAPVDKTGGKQLIVHAPFMVGAFSVKWIVML 546 (610)
T ss_pred cccCccccccceeeeecCchhhccceeeeEEEE
Confidence 777766778888899999999998876665433
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=204.81 Aligned_cols=134 Identities=18% Similarity=0.323 Sum_probs=91.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++++|||++|.+..+.++..|...... .++.++..+.. ..|..+
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~l 717 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAKI 717 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHHH
Confidence 578999999999999999888642110 01122223333 478889
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEE--EEecceeccCCC----------------CccccC----CHHHHHHhhcc
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIYNPEK----------------GAWTEL----SPLDIMQMLGR 870 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~yd~~~----------------g~~~~~----s~~~~~Qr~GR 870 (2114)
++.|++|...||+||+.+++|||+|+..+ ||-...||.++. ..|.++ ....+.|.+||
T Consensus 718 l~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GR 797 (850)
T TIGR01407 718 KKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGR 797 (850)
T ss_pred HHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcc
Confidence 99999999999999999999999998653 444556776543 112333 44678999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCc
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~p 903 (2114)
.-|... ..|..+++-..-....|-+.+-..+|
T Consensus 798 lIRs~~-D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 798 LIRREN-DRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred ccccCC-ceEEEEEEccccccchHHHHHHHhCC
Confidence 999754 46766666444333455554444455
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=172.26 Aligned_cols=279 Identities=24% Similarity=0.383 Sum_probs=213.7
Q ss_pred CCCCCHHHHHHHhhCCccC-----CCCcCChhHHHHHHHHhccCCC---CCCCC-CC-ChhHHHHHHHHHHHhcccCCCC
Q 000129 1021 KPTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-LE-EPSAKINVLLQAYISQLKLEGL 1090 (2114)
Q Consensus 1021 ~~~~~~~~~l~i~s~s~ef-----~~i~~r~~e~~~l~~l~~~~~~---~~~~~-~~-~~~~K~~~llq~~i~~~~~~~~ 1090 (2114)
.+.|...-++.+||.|.|| +++.-|+.+.-+.-.|+..++- .-++. .. .-+.|..+||.||+||++++.=
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 3556667788999999999 5677888888888888766542 11111 11 3367999999999999999977
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHH-------Hc---C--cHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHH
Q 000129 1091 SLTSDMVFITQSAGRLLRALFEIVL-------KR---G--WAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (2114)
Q Consensus 1091 ~l~~d~~~i~~~a~rl~~a~~ei~~-------~~---~--~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l 1158 (2114)
.|.-|..||+....|++.-|+..+- .+ . -.....++|.|+.|+.|++|...|||.|+|||.+.-++.+
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 8999999999999999988876432 11 1 1245678999999999999999999999999999999999
Q ss_pred HhCC-C-chhhhccCChHHhhhhhcC-chhH-HHHHHHHhcCCceeEEEEEeecc---------CceEEEEEEEccC---
Q 000129 1159 EKKD-F-AWERYYDLSPQELGELIRF-PKMG-RTLHKFVHQFPKLILAAHVQPIT---------RTVLKVELTITPD--- 1222 (2114)
Q Consensus 1159 ~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~~~~P~~~~~~~~~~~~---------~~~l~~~l~i~~~--- 1222 (2114)
.++- + +..++.-|.+++...||++ .... ..+...+..||.+.++...+-+. +.+++|.|++++.
T Consensus 168 ~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~ 247 (520)
T KOG4434|consen 168 RKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLI 247 (520)
T ss_pred hhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecccc
Confidence 7654 3 6778888899999999874 4444 78889999999999987776442 5667777777431
Q ss_pred --------------------------------------------------------------------------------
Q 000129 1223 -------------------------------------------------------------------------------- 1222 (2114)
Q Consensus 1223 -------------------------------------------------------------------------------- 1222 (2114)
T Consensus 248 d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ 327 (520)
T KOG4434|consen 248 DPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATE 327 (520)
T ss_pred ChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhh
Confidence
Q ss_pred ------------------------------------------------CccCC-------------------CCCCcccc
Q 000129 1223 ------------------------------------------------FLWDD-------------------KVHGYVEP 1235 (2114)
Q Consensus 1223 ------------------------------------------------f~~~~-------------------~~~~~~~~ 1235 (2114)
-.|.+ .||++++|
T Consensus 328 ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFP 407 (520)
T KOG4434|consen 328 KALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFP 407 (520)
T ss_pred hhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCc
Confidence 00211 08888877
Q ss_pred ------EEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcccccccc
Q 000129 1236 ------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2114)
Q Consensus 1236 ------~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~ 1301 (2114)
||+.|.|..+..+|...+...+=+ -.++..+.|+.| ..|+-+.|.|.+-||+|+|.+...|+-+
T Consensus 408 eEKqEwWW~Yi~drKsrtLlt~PyhV~tL~-d~eei~lkF~AP-~~pG~Ytytv~lrSDSYmg~dq~~~lKl 477 (520)
T KOG4434|consen 408 EEKQEWWWLYIADRKSRTLLTMPYHVCTLK-DTEEIELKFPAP-GKPGNYTYTVFLRSDSYMGLDQIKPLKL 477 (520)
T ss_pred chhhheeeeeeecccccceecchhhhhccc-ccceeEEeccCC-CCCCceEEEEEEecccccChhhccceee
Confidence 999999998888876666432211 146778899988 5788899999999999999998777654
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=197.71 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=86.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc-C
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE-K 1438 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~-~ 1438 (2114)
-|..++||.|||++|.+|++..... +. .+.+|+|+..||.+-++.+.. +-..+|++|++++|+.+...+.-. .
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~~-l~~~lGlsv~~i~~~~~~~~r~~~Y~ 171 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNRP-LFEFLGLTVGINVAGLGQQEKKAAYN 171 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHHH-HHHhcCCeEEEecCCCCHHHHHhcCC
Confidence 5889999999999999999876655 33 589999999999999887774 555679999999998776543332 6
Q ss_pred CcEEEEChhhH-HHHHhhh-ccc---ccccceeEEEeccccccc
Q 000129 1439 GQIIISTPEKW-DALSRRW-KQR---KYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~-~~~---~~l~~v~liIiDEaH~l~ 1477 (2114)
++|+++||+.+ ..++|.. ... ...+.+.++||||||.++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 79999999997 5566653 111 123678999999999654
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=200.21 Aligned_cols=359 Identities=14% Similarity=0.108 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~---------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.+++.|..|+..+++ +.++.+|+.|||||||+++...+...+.. ... .++|+|+|+++|..|+.+.|.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHH
Confidence 367889999888643 24579999999999999987766555433 223 399999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcccch-hhcc--CCcEEEEChhhHHHHHhhhcccccccc-eeEEEecccccccCCCCchHHHH
Q 000129 1412 IKFGQGLGMRVVELTGETAMDL-KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~-~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~-v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
. ++.. .+. ..+. ..++ ..+. .+.|+|+|.+++...+..+........ --+||+||||+..... +
T Consensus 315 ~-~~~~---~~~-~~~s-~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~------~ 382 (667)
T TIGR00348 315 S-LQKD---CAE-RIES-IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE------L 382 (667)
T ss_pred h-hCCC---CCc-ccCC-HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH------H
Confidence 4 4421 010 0111 1111 1222 358999999998764433211111111 1289999999764221 3
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCChhH--HHHHhcCCC-Cceeec--CCC---CCccCcEEEEec----ccccc----
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLANAKD--LGEWIGATS-HGLFNF--PPG---VRPVPLEIHIQG----VDITN---- 1551 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n~~d--la~wl~~~~-~~~~~f--~~~---~rpv~l~~~~~~----~~~~~---- 1551 (2114)
...|+.. -++..++|||||+-...+ -...+|... ..++.+ ... .-.+|+...... .....
T Consensus 383 ~~~l~~~----~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 383 AKNLKKA----LKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHhh----CCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 3333322 245789999999854211 112222110 011111 000 011111111000 00000
Q ss_pred hHHHH-------------------Hh-----c----CHHHHHHHHHHh----c-CCCCEEEEeCChHHHHHHHHHHHHhh
Q 000129 1552 FEARM-------------------QA-----M----TKPTFTAIVQHA----K-NEKPALVFVPSRKYVRLTAVDLMTYS 1598 (2114)
Q Consensus 1552 ~~~~~-------------------~~-----~----~~~~~~~i~~~l----~-~~~~~LVFv~sr~~a~~la~~L~~~~ 1598 (2114)
+.... .. . .......+..+. . .+++++|||.++..|..++..|..+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhc
Confidence 00000 00 0 011112222222 1 24789999999999999998886654
Q ss_pred ccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC-CHHHHHHHHHHHhc-CCceEEEecCccccccCCC
Q 000129 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL-NKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLT 1676 (2114)
Q Consensus 1599 ~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l-s~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdip 1676 (2114)
.............+... .... ......+... ++.- .......+.+.|++ +.++|||+++.+..|+|.|
T Consensus 539 ~~~~~~~~vv~s~~~~~-~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP 608 (667)
T TIGR00348 539 NEKFEASAIVMTGKESD-DAEI-----RDYNKHIRTK----FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAP 608 (667)
T ss_pred ccccCCeeEEecCCccc-hhHH-----HHHHHHhccc----cccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCC
Confidence 32210000011111000 0000 0011111110 0000 01234568888976 6899999999999999999
Q ss_pred CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHh
Q 000129 1677 AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1677 ~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
.+.+++. +.|..-..++|++||+.|.-...+-.++|+..-...+.+++.+.+
T Consensus 609 ~l~tLyl-----------dKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g~~~~l~~Al~~ 660 (667)
T TIGR00348 609 ILNTLYL-----------DKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRGLEKSLIDALSL 660 (667)
T ss_pred ccceEEE-----------eccccccHHHHHHHHhccccCCCCCCEEEEECcChHHHHHHHHHH
Confidence 9888872 344444568999999999522222224444444444555554433
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=183.42 Aligned_cols=381 Identities=10% Similarity=-0.004 Sum_probs=242.5
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+....+|.+ -..+..+|.++++.+-+ ++|+++.-.|.+||.+|+.++....+... +.. ..+|+.|++++++...
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s--~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTLC-HAT--NSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhcC-ccc--ceecchhHHHHhhccC
Confidence 455667775 45789999999998865 66699999999999999999988777663 333 6799999999988754
Q ss_pred HHHHHHhcCCC---CcEEEEEcCCcccchhhc--cCCcEEEEChhhHHH-HH-hhhcccccccceeEEEecccccccCCC
Q 000129 1408 RDWEIKFGQGL---GMRVVELTGETAMDLKLL--EKGQIIISTPEKWDA-LS-RRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1408 ~~~~~~f~~~~---g~~v~~l~G~~~~~~~~l--~~~~IIV~TPe~l~~-l~-r~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (2114)
+-+.-.+.... .--|-...|++....+.+ .+.+++++.|..... .+ .....+..+-...++++||+|.+....
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 43221111110 111222334443333322 244899999987643 22 221223345567889999999988777
Q ss_pred CchHHHHHHHHHHHHhhc--CCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1481 GPVLEVIVSRMRYIASQV--ENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~--~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
|......+.++..+..-+ ..+.+++-.|||+-+.. ...+.+|.....++....+-....+-+...+-..+.....-.
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 766666666665554432 35789999999997754 444555655444443332221111111111111111111111
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
......-..+.+.+..+-++|.||++|+-|+.+-......+... -. .+-..|.
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET--------------------------~~-~LV~~i~ 561 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAET--------------------------AP-HLVEAIT 561 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHh--------------------------hH-HHHHHHH
Confidence 11122223333444668899999999999987764433221100 00 1112355
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+.||-+.+||+.++...-.|++.-+|||+.++-|+|+.....|+ +...|+|++.+.|..|||||.. .
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl----------~~GFP~S~aNl~QQ~GRAGRRN--k 629 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL----------HLGFPGSIANLWQQAGRAGRRN--K 629 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE----------EccCchhHHHHHHHhccccccC--C
Confidence 678999999999999999999999999999999999999999999 7889999999999999999984 4
Q ss_pred ceEEEEE--eecCcHHHHHHHHHhccCCCCccccCCCc
Q 000129 1718 SGKCVIL--CHAPRKEYYKKFLRLTQNPNYYNLQGVSH 1753 (2114)
Q Consensus 1718 ~G~~iil--~~~~~~~~~~~~lRl~~nP~~y~l~~~s~ 1753 (2114)
+..++.+ ..+-+..|++.-..++..|++--..+...
T Consensus 630 ~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N 667 (1034)
T KOG4150|consen 630 PSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQN 667 (1034)
T ss_pred CceEEEEEeccchhhHhhcCcHHHhCCCcceeEEeccc
Confidence 4444444 33444455555557778887764444333
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=199.49 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=115.8
Q ss_pred ceEEEEcccCC---ChhHHHHHhcCCCCceeec-CCCCC-ccCcEEEEec-ccccch--HHHHHhcCHHHHHHHHHHh-c
Q 000129 1502 IRIVALSTSLA---NAKDLGEWIGATSHGLFNF-PPGVR-PVPLEIHIQG-VDITNF--EARMQAMTKPTFTAIVQHA-K 1572 (2114)
Q Consensus 1502 ~riV~lSATl~---n~~dla~wl~~~~~~~~~f-~~~~r-pv~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~~~l-~ 1572 (2114)
..+|++|||+. +..-+.+.+|........+ ++.+. .-...+.+.. .+.... ..... ......+...+ .
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~---~~ia~~i~~l~~~ 672 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYA---QEIASYIIEITAI 672 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHH---HHHHHHHHHHHHh
Confidence 46899999997 4556778888764332222 11111 1112222211 111110 11111 11122222211 2
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..+++|||++|.+..+.++..|..... ..++..+..+.. ..|..++
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~---------------------------------~~~~~~l~q~~~-~~r~~ll 718 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPE---------------------------------FEGYEVLAQGIN-GSRAKIK 718 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhcc---------------------------------ccCceEEecCCC-ccHHHHH
Confidence 457899999999999888876632110 112333444444 5788999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcE---EEEEeeeEecCC----------------c---CcCCCCCHhHHHHhHccc
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHL---VVVMGTQYYDGQ----------------E---NAHTDYPVTDLLQMMGHA 1710 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~---vVI~gt~~yd~~----------------~---~~~~~~s~~~~lQr~GRA 1710 (2114)
+.|++|+..||+||+.+.+|||+|+.. +||.|.++-.+. . .+..|..+..+.|.+||.
T Consensus 719 ~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRl 798 (850)
T TIGR01407 719 KRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRL 798 (850)
T ss_pred HHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccc
Confidence 999999999999999999999999754 445555543221 1 112233457788999999
Q ss_pred CCCCCCCceEEEEEeecCcHHHH-HHHHHhc
Q 000129 1711 SRPLLDNSGKCVILCHAPRKEYY-KKFLRLT 1740 (2114)
Q Consensus 1711 GR~~~~~~G~~iil~~~~~~~~~-~~~lRl~ 1740 (2114)
-|.. +..|.++++-..-....| +.|++.+
T Consensus 799 IRs~-~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 799 IRRE-NDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred cccC-CceEEEEEEccccccchHHHHHHHhC
Confidence 9974 567766666444333344 5555444
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=194.18 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=175.8
Q ss_pred CCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+++.|..|+..++.. .++.+++.|||||||+++...+...+... ...++|+|+|+++|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 577888888776432 35799999999999999877765544222 245899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEeCCC-ccChhh-hccceEEEcCHhHHHHHHhccCCCcccccc-cEEEEecccccccCCchhH
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQ-TLTRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV-KLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~-~~~~~~-~~~~~IiV~TPek~d~l~r~~~~~~~l~~v-~liIiDEaH~l~d~rg~~l 643 (2114)
.+.|...... . + ...+.. .+.... .....|+|+|..++...............- -+||+||||+... | .+
T Consensus 310 ~~~f~~~~~~-~--~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~ 382 (667)
T TIGR00348 310 MKEFQSLQKD-C--A-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-EL 382 (667)
T ss_pred HHHHHhhCCC-C--C-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HH
Confidence 9999886421 0 1 001110 010111 124689999999874321111100011111 2899999998542 1 12
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHH--HHHHhccccCceEeec--C---CcccccceeEEEeecc------C
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDV--ALFLRVNLEKGLFYFD--N---SYRPVPLSQQYIGIQV------K 710 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn~~dv--a~~l~~~~~~~~~~f~--~---~~rpv~l~~~~~~~~~------~ 710 (2114)
...+. ..-++..++|||||.-...+- ...++......++.+. . .-..+|+. |.+... .
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~--Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKID--YEDRLPEDHLDRK 453 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEE--EEecchhhccChH
Confidence 22221 123567899999994221111 1111110001111100 0 00011111 111000 0
Q ss_pred c-----------------h-----hH-HHHH---------hhHHHHHHHHHHh----C--CCeEEEEecChHHHHHHHHH
Q 000129 711 K-----------------P-----LQ-RFQL---------MNDLCYEKVVAVA----G--KHQVLIFVHSRKETAKTARA 752 (2114)
Q Consensus 711 ~-----------------~-----~~-~~~~---------~~~~~~~~i~~~~----~--~~~vLVFv~sr~~~~~~a~~ 752 (2114)
. . .+ .... ....+...+.++. . +++++|||.+|..|...++.
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 0 0 00 0000 0011111222221 2 47999999999999999998
Q ss_pred HHHHhhccc-ccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCC-CHHHHHHHHHHHhC-CCceEEEechH
Q 000129 753 IRDTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTAT 829 (2114)
Q Consensus 753 L~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl-~~~~R~~v~~~F~~-g~i~VLVaT~t 829 (2114)
|.+...... .....+............ ..+.+.. .++.- .......+.+.|++ +.++|||+++.
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdm 600 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRD---------YNKHIRT----KFDKSDGFEIYYKDLERFKKEENPKLLIVVDM 600 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHH---------HHHHhcc----ccccchhhhHHHHHHHHhcCCCCceEEEEEcc
Confidence 876542210 000001000000000000 0000000 00000 01134568889976 78999999999
Q ss_pred hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
+..|+|.|.+.+++- |-+- .-..++|++||+.|+-...+-.++|+.-.
T Consensus 601 llTGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 601 LLTGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred cccccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEECc
Confidence 999999999998874 3221 22348999999999522223335555443
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=181.49 Aligned_cols=289 Identities=23% Similarity=0.321 Sum_probs=192.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~ 593 (2114)
++-+|||.||||.-| |+.+.... +.+|--|.|-||.|++.++.+. |+.+..+||.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc-----------cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 677899999999865 45554432 5799999999999999998875 8999999997543222
Q ss_pred -hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000129 594 -QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2114)
Q Consensus 594 -~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp 671 (2114)
.-..++.+-||-|+.+ .-..+.+.||||+++|.| .||..+...+--+ ....+.+.|=-|-++
T Consensus 255 ~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsvld 318 (700)
T KOG0953|consen 255 DNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSVLD 318 (700)
T ss_pred CCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchHHH
Confidence 1235778888888532 223478999999999999 6998887554333 223444444433333
Q ss_pred ChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHH
Q 000129 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR 751 (2114)
Q Consensus 672 n~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~ 751 (2114)
-|.+.+...... +....-.|-.|+.. . +.+...+ .....+.++| |-||+....+.+
T Consensus 319 ---lV~~i~k~TGd~--vev~~YeRl~pL~v-----~------------~~~~~sl-~nlk~GDCvV-~FSkk~I~~~k~ 374 (700)
T KOG0953|consen 319 ---LVRKILKMTGDD--VEVREYERLSPLVV-----E------------ETALGSL-SNLKPGDCVV-AFSKKDIFTVKK 374 (700)
T ss_pred ---HHHHHHhhcCCe--eEEEeecccCccee-----h------------hhhhhhh-ccCCCCCeEE-EeehhhHHHHHH
Confidence 233333322111 11111112222221 0 0111111 2233555555 557888887777
Q ss_pred HHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC--CCceEEEechH
Q 000129 752 AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVSTAT 829 (2114)
Q Consensus 752 ~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVaT~t 829 (2114)
.+...+. ..+++.+|+|+++.|..--.+|.+ +..+|||||++
T Consensus 375 kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA 418 (700)
T KOG0953|consen 375 KIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA 418 (700)
T ss_pred HHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc
Confidence 7766542 226788999999999999999987 99999999999
Q ss_pred hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC-CcHHHHHHhhcC
Q 000129 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRYYLSLMNQ 900 (2114)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~e~~~~~~ll~~ 900 (2114)
.++|+|+.-.++|+..-..|+... ..+++..+..|.+|||||-|- +...+++-+-+ .++..+.+.++.
T Consensus 419 IGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s-~~~~G~vTtl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 419 IGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGS-KYPQGEVTTLHSEDLKLLKRILKR 487 (700)
T ss_pred cccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhccccccc-CCcCceEEEeeHhhHHHHHHHHhC
Confidence 999999988888887777777543 578999999999999999763 23344444433 556666666554
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-14 Score=187.51 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
..+..+......+.++||||+|++.++.++..|.. .+..+.++|+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~-----------------------------------~gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE-----------------------------------LGIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh-----------------------------------hccceeeeeC
Confidence 34455555556788999999999999998876632 1335788999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
+++..+|..+++.|+.|.++|||||+.+++|+|+|.+.+|| .++.. .+..|.+..+|+||+|||||. ..|+|
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~Dad-ifG~p~~~~~~iqriGRagR~---~~G~v 546 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKV 546 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCcc-cccCCCCHHHHHHHhcCCCCC---CCCEE
Confidence 99999999999999999999999999999999999999877 12222 334677899999999999995 58999
Q ss_pred EEEeecCcH
Q 000129 1722 VILCHAPRK 1730 (2114)
Q Consensus 1722 iil~~~~~~ 1730 (2114)
++++.....
T Consensus 547 i~~~~~~~~ 555 (655)
T TIGR00631 547 IMYADKITD 555 (655)
T ss_pred EEEEcCCCH
Confidence 999886554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=175.01 Aligned_cols=288 Identities=20% Similarity=0.211 Sum_probs=172.0
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
+.++.+|.. ...|...|+-....++.+ ++.-+.||||.|||+-..+..+-... .++ +++||+||..|+.|++
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg-~SFaiiAPTGvGKTTfg~~~sl~~a~---kgk--r~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRG-KSFAIIAPTGVGKTTFGLLMSLYLAK---KGK--RVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcC-CceEEEcCCCCchhHHHHHHHHHHHh---cCC--eEEEEecCHHHHHHHH
Confidence 446666662 238999999999999884 55999999999999866544442222 244 9999999999999999
Q ss_pred HHHHHHhcCCCC-cEEEE-EcCCcccc-----hhhccC--CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1408 RDWEIKFGQGLG-MRVVE-LTGETAMD-----LKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1408 ~~~~~~f~~~~g-~~v~~-l~G~~~~~-----~~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
++++ .|+...| ..+.. .+|..+.. ...+.+ .||+|+|..-+..-.... .--++++|++|++|.+.-
T Consensus 143 ~kl~-~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 143 ERLK-KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHH-HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cccCCCEEEEccHHHHHh
Confidence 9998 5664323 33322 66765443 234454 489999976533222211 113689999999996542
Q ss_pred CC----------CchHHHH------------------HHHHHHHHh--------hcCCCceEEEEcccCCChh----HHH
Q 000129 1479 QG----------GPVLEVI------------------VSRMRYIAS--------QVENKIRIVALSTSLANAK----DLG 1518 (2114)
Q Consensus 1479 ~~----------g~~le~i------------------~srl~~i~~--------~~~~~~riV~lSATl~n~~----dla 1518 (2114)
.. |-.=|.+ ..+.+.+.. +-.+..++|..|||..... -+.
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 11 2111111 111111111 1124578999999985432 334
Q ss_pred HHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCC---hHHHHHHHHHHH
Q 000129 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPS---RKYVRLTAVDLM 1595 (2114)
Q Consensus 1519 ~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~s---r~~a~~la~~L~ 1595 (2114)
+.+| |.......-+.-.+..+.... .......+.+.+ +.-.||||+. +..++.++..|.
T Consensus 298 eLlg--------FevG~~~~~LRNIvD~y~~~~--------~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr 359 (1187)
T COG1110 298 ELLG--------FEVGSGGEGLRNIVDIYVESE--------SLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLR 359 (1187)
T ss_pred HHhC--------CccCccchhhhheeeeeccCc--------cHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHH
Confidence 4444 333322222222222222111 111122233332 4468999999 666666665442
Q ss_pred HhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec----Ccccc
Q 000129 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS----SSMCW 1671 (2114)
Q Consensus 1596 ~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT----~~la~ 1671 (2114)
. .+..+..+|++ .+..++.|..|+++|||+. .++.|
T Consensus 360 ~-----------------------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVR 399 (1187)
T COG1110 360 S-----------------------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVR 399 (1187)
T ss_pred h-----------------------------------cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceee
Confidence 2 23456777773 3778899999999999987 56999
Q ss_pred ccCCCC-cEEEE-Eeee
Q 000129 1672 GVPLTA-HLVVV-MGTQ 1686 (2114)
Q Consensus 1672 Gvdip~-~~vVI-~gt~ 1686 (2114)
|+|+|. ++++| .|.+
T Consensus 400 GlDLP~rirYaIF~GvP 416 (1187)
T COG1110 400 GLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cCCchhheeEEEEecCC
Confidence 999995 44444 5655
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=181.57 Aligned_cols=310 Identities=15% Similarity=0.159 Sum_probs=184.2
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
..++.+|..|+..+. .++..+|+++.||+|||..| ++|+..|.+....+ |+|+++-+++|+.|.+..+.. |-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~K--RVLFLaDR~~Lv~QA~~af~~-~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVK--RVLFLADRNALVDQAYGAFED-FL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhh--eeeEEechHHHHHHHHHHHHH-hC
Confidence 468999999998764 45667999999999999998 45555555544455 999999999999999998884 44
Q ss_pred CCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhh-c--ccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW-K--QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~-~--~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
.. +-.+..+.+.... ..++|.|+|...+......- . .+.....++||||||||+=.-. -+..++ -
T Consensus 240 P~-~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~---~~~~I~---d 307 (875)
T COG4096 240 PF-GTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS---EWSSIL---D 307 (875)
T ss_pred CC-ccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh---hhHHHH---H
Confidence 33 4444444442221 25689999999876655432 1 1224556999999999953111 111222 2
Q ss_pred HHHhhcCCCceEEEEcccCCChhH--HHHHh-cCCCCceeec--------CCCCCccCcE--EEEecccccchHHH----
Q 000129 1493 YIASQVENKIRIVALSTSLANAKD--LGEWI-GATSHGLFNF--------PPGVRPVPLE--IHIQGVDITNFEAR---- 1555 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n~~d--la~wl-~~~~~~~~~f--------~~~~rpv~l~--~~~~~~~~~~~~~~---- 1555 (2114)
+.. ...++++||+.+..+ --.++ |.+. ..|.. -..++++.+. ....|.....-..+
T Consensus 308 YFd------A~~~gLTATP~~~~d~~T~~~F~g~Pt-~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 308 YFD------AATQGLTATPKETIDRSTYGFFNGEPT-YAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HHH------HHHHhhccCcccccccccccccCCCcc-eeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 221 234666999876432 23345 3321 11110 0112222222 22222221111000
Q ss_pred ------------------H---HhcCHHHHHHHHHHhcC------CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1556 ------------------M---QAMTKPTFTAIVQHAKN------EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1556 ------------------~---~~~~~~~~~~i~~~l~~------~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
. ..-...+...+..++.. -+++||||.+..+|+.+...+.......+
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~------ 454 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN------ 454 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc------
Confidence 0 00011222333344444 35799999999999999988755332110
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHh-cCCceEEEecCccccccCCCCcEEEEEeeeE
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE-AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~-~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~ 1687 (2114)
+.=+..+.+. ....+..+-.-+. +.--+|.|+.+++..|||+|.+..+|
T Consensus 455 ------------------------~~~a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV----- 504 (875)
T COG4096 455 ------------------------GRYAMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV----- 504 (875)
T ss_pred ------------------------CceEEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee-----
Confidence 0113334433 2344444544444 34568999999999999999888777
Q ss_pred ecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1688 YDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
-.-.-.|.+-|.||+||+-|.
T Consensus 505 -----F~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 505 -----FDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred -----ehhhhhhHHHHHHHhcCcccc
Confidence 122235889999999999996
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=171.25 Aligned_cols=355 Identities=13% Similarity=0.040 Sum_probs=229.0
Q ss_pred hhhHhhcCCC--CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 484 EWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 484 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
+.+...+.|. +.+..+|.+++..+-+ ++|+++.-.|.|||.+|+.++....+..... ...+|+.||++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~---------s~~~~~~~~~~ 342 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTLCHA---------TNSLLPSEMVE 342 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhcCcc---------cceecchhHHH
Confidence 3444555444 4678899999997654 5679999999999999999988877665432 25789999999
Q ss_pred HHHHHHHHHHHhhccC----CcEEEEEeCCCccChhh--hccceEEEcCHhHH--HHHHhccCCCcccccccEEEEeccc
Q 000129 562 LVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+++...+.+.-.+... +--|....|+...++.. ..+.+++++.|... ..+......+.++-...+++.||+|
T Consensus 343 ~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 343 HLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred HhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 9987755443222110 12233344444444432 35789999999985 3333333334455567899999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhh--ccccccEEEEccccCChHHHHHHH-hccccCceEeecCCcccccceeEEEe----
Q 000129 634 LLHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIG---- 706 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~--~~~~~riv~lSATlpn~~dva~~l-~~~~~~~~~~f~~~~rpv~l~~~~~~---- 706 (2114)
.+...+|......+.++.+.... ...+.+++-.|||+.+......-+ +.+ .-.+...+++ |..-...++-
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K~~V~WNP~~ 499 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEKLFVLWNPSA 499 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccceEEEeCCCC
Confidence 99877787777777776665433 245789999999997654443333 322 2223333333 2221111110
Q ss_pred --eccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhccc
Q 000129 707 --IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2114)
Q Consensus 707 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (2114)
....+..........++.+.+. .+-++|-||.+|+-|+-+.+..++...+...
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~---------------------- 554 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAP---------------------- 554 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH----------------------
Confidence 0111111222222333333222 2568999999999999887776665433211
Q ss_pred CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 785 ~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
.|. ..|..+.||-+.++|+.++...-.|++.-+|||++|+-|||+...+.|++-..| +|.+.+
T Consensus 555 ---~LV----~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP----------~S~aNl 617 (1034)
T KOG4150|consen 555 ---HLV----EAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP----------GSIANL 617 (1034)
T ss_pred ---HHH----HHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc----------hhHHHH
Confidence 000 012345899999999999999999999999999999999999999999984433 378899
Q ss_pred HHhhcccCCCCCCCceEEEEEcCC-CcHHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGH-SELRYYL 895 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~-~e~~~~~ 895 (2114)
.|.+|||||.. +.+.++.+... +-.++|.
T Consensus 618 ~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 618 WQQAGRAGRRN--KPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred HHHhccccccC--CCceEEEEEeccchhhHhh
Confidence 99999999976 44555555443 2334554
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=186.54 Aligned_cols=343 Identities=14% Similarity=0.081 Sum_probs=202.7
Q ss_pred EecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-----hhhcc
Q 000129 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-----LKLLE 1437 (2114)
Q Consensus 1363 ~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-----~~~l~ 1437 (2114)
.+.+|||||.+|+-.+-..+.. ++ .+|+++|..+|+.|+.++++++|+. ..|+.++++.+.. +..+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHh
Confidence 3446999999998877777665 55 8999999999999999999998862 4688899887654 22223
Q ss_pred C--CcEEEEChhhHHHHHhhhcccccccceeEEEeccccc--ccCCCCchH---HHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1438 K--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL--IGGQGGPVL---EVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1438 ~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~--l~~~~g~~l---e~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
. .+|+|+| +..-...+.++++|||||-|- +.+++++.| +..+-|-+ ..+..+|+.|||
T Consensus 238 ~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------~~~~~lvLgSaT 302 (665)
T PRK14873 238 RGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------QHGCALLIGGHA 302 (665)
T ss_pred CCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------HcCCcEEEECCC
Confidence 3 4899999 545567899999999999993 333445543 22222222 347899999999
Q ss_pred CCChhHHHHHhcCCCCceeecCCC---CCccCcEEEEecccccchH----HHHHhcCHHHHHHHHHHhcCCCCEEEEeCC
Q 000129 1511 LANAKDLGEWIGATSHGLFNFPPG---VRPVPLEIHIQGVDITNFE----ARMQAMTKPTFTAIVQHAKNEKPALVFVPS 1583 (2114)
Q Consensus 1511 l~n~~dla~wl~~~~~~~~~f~~~---~rpv~l~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~LVFv~s 1583 (2114)
++ .+ .|.......+...... .+...-.+++.+....... .....+.......+.+.+..+ |+|||+|.
T Consensus 303 PS-le---s~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnR 377 (665)
T PRK14873 303 RT-AE---AQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPR 377 (665)
T ss_pred CC-HH---HHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecC
Confidence 74 32 3322222111111111 1111113333332110000 001125667788888888878 99999999
Q ss_pred hHHH-----HHHHHH-------------------HHHhhccCCcccccccCCCcccchhh---HhhhhHHHHHHHhccce
Q 000129 1584 RKYV-----RLTAVD-------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1584 r~~a-----~~la~~-------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~gV 1636 (2114)
|.-+ ..+... .|++|.....+.. |..|....+... .+++.++.-..+....|
T Consensus 378 rGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~-Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V 456 (665)
T PRK14873 378 RGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWR-CPRCGSDRLRAVVVGARRTAEELGRAFPGVPV 456 (665)
T ss_pred CCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCcc-CCCCcCCcceeeeccHHHHHHHHHHHCCCCCE
Confidence 8743 222111 1333333222222 445544443322 44444444444444455
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecC----ccccccCCCCcEEE-EEeee--EecCCcCcCCCCCHhHHHHhHcc
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSS----SMCWGVPLTAHLVV-VMGTQ--YYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~----~la~Gvdip~~~vV-I~gt~--~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
...- +..+++.|. ++.+|||+|. +++ | .+..| |.+.. .+.+. -+.......-+.|-+||
T Consensus 457 ~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pD-fRA~Er~~qll~qvagr 522 (665)
T PRK14873 457 VTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQD-LRAAEDTLRRWMAAAAL 522 (665)
T ss_pred EEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-C----CceEEEEEcchhhhcCCC-cChHHHHHHHHHHHHHh
Confidence 5432 335888897 5999999999 665 3 33433 32221 11111 11122236677899999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHH------------HHHH---HhccCCCCccccCC
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYY------------KKFL---RLTQNPNYYNLQGV 1751 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~------------~~~l---Rl~~nP~~y~l~~~ 1751 (2114)
|||. +..|.+++.+ .++...+ +.-+ +....|+|..+..+
T Consensus 523 agr~--~~~G~V~iq~-~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i 576 (665)
T PRK14873 523 VRPR--ADGGQVVVVA-ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAV 576 (665)
T ss_pred hcCC--CCCCEEEEEe-CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEE
Confidence 9997 7889999986 4443222 2222 66778988877655
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-14 Score=175.99 Aligned_cols=310 Identities=17% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
-..++.+|..||..+. .++..+|+++.||+|||.+|+..|.+.+..+. -.++|+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~---------~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW---------VKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch---------hheeeEEechHHHHHHHHH
Confidence 3578999999997654 34456999999999999998655554443332 2389999999999999999
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhc-c-CCCcccccccEEEEecccccccCCchhHHH
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK-S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~-~-~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (2114)
.|...+. .+-.+..+.+-... ..++|.|+|...+ ..+... . ........++||||||||+=.- .....
T Consensus 234 af~~~~P-~~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFLP-FGTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhCC-CccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 9887654 45445444443221 1579999999986 333322 1 1123345589999999997211 11223
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHH--HHHhccccCceEeec----------CCccccc--ceeEEEeeccCc
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFYFD----------NSYRPVP--LSQQYIGIQVKK 711 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlpn~~dva--~~l~~~~~~~~~~f~----------~~~rpv~--l~~~~~~~~~~~ 711 (2114)
|+..+ ....+|++||..+-.+.. .|+.. .+++.++ ..++++. +....-|.....
T Consensus 305 I~dYF---------dA~~~gLTATP~~~~d~~T~~~F~g---~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~ 372 (875)
T COG4096 305 ILDYF---------DAATQGLTATPKETIDRSTYGFFNG---EPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDA 372 (875)
T ss_pred HHHHH---------HHHHHhhccCcccccccccccccCC---CcceeecHHHHhhccccCCCCceEEeeeccccCcCcCc
Confidence 43332 122367799965422222 22211 1111100 0122211 111111111110
Q ss_pred hh----------------------HH---HHHhhHHHHHHHHHHh-----C--CCeEEEEecChHHHHHHHHHHHHHhhc
Q 000129 712 PL----------------------QR---FQLMNDLCYEKVVAVA-----G--KHQVLIFVHSRKETAKTARAIRDTALE 759 (2114)
Q Consensus 712 ~~----------------------~~---~~~~~~~~~~~i~~~~-----~--~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2114)
.. .+ ...-.+.+...+.+.. + -+++||||.+..+|+.++..|......
T Consensus 373 ~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype 452 (875)
T COG4096 373 GSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE 452 (875)
T ss_pred cchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc
Confidence 00 00 0000111111122211 1 358999999999999999998875433
Q ss_pred ccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh-CCCceEEEechHhhhhcCCCc
Q 000129 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPA 838 (2114)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~-~g~i~VLVaT~tla~GVdlP~ 838 (2114)
... .+ +-...+. ....+..+-+.+. +.-.+|.|+.+.+..|||+|.
T Consensus 453 ~~~--~~------------------------------a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpe 499 (875)
T COG4096 453 YNG--RY------------------------------AMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPE 499 (875)
T ss_pred ccC--ce------------------------------EEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchh
Confidence 110 00 1111222 2333444444443 456789999999999999999
Q ss_pred eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC
Q 000129 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2114)
+..+| ++-.- .|..-|.||+||+-|.-
T Consensus 500 v~nlV-----F~r~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 500 VVNLV-----FDRKV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eeeee-----ehhhh-----hhHHHHHHHhcCccccC
Confidence 98888 33322 27888999999999953
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-14 Score=187.98 Aligned_cols=324 Identities=18% Similarity=0.217 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|.++|.+.+.-++ ..+.+.|++-..|.|||+.++..+ ..+..... ....+|||+|. +|..++.++|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~-------~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG-------ITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC-------CCCCEEEEeCh-HHHHHHHHHHH
Confidence 78999999998664 355678999999999999875443 33332211 11258999995 77789999998
Q ss_pred HhhccCCcEEEEEeCCCccChhh------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (2114)
+++. .+++..++|+....... ....+|+|+|.+.+. +.... ..--..++||+||+|.+.....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~---~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAI---KEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHH---HHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46788888865322111 235789999999752 11100 1112357999999999864221
Q ss_pred HHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEe----e------cC-------------Cccc---
Q 000129 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (2114)
Q Consensus 646 iv~rl~~~~~~~~~~~riv~lSATlp--n~~dva~~l~~~~~~~~~~----f------~~-------------~~rp--- 697 (2114)
.+++.++.+ .. ...++||+|.- |..++...+..-.+ +.|. | .. -.+|
T Consensus 309 klskalr~L---~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P-~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---ST-NYRLLITGTPLQNNLHELWALLNFLLP-EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---hc-CcEEEEecCCCCCCHHHHHHHHhcCCC-CcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122222222 22 33488999931 23443333221100 0000 0 00 0000
Q ss_pred ----------c-cceeEEEeeccCchhHH-HHH------------------hh------HHH------------------
Q 000129 698 ----------V-PLSQQYIGIQVKKPLQR-FQL------------------MN------DLC------------------ 723 (2114)
Q Consensus 698 ----------v-~l~~~~~~~~~~~~~~~-~~~------------------~~------~~~------------------ 723 (2114)
. |.....+.+........ +.. ++ ..|
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 0 11111111111110000 000 00 000
Q ss_pred ------------HHHHHHH--hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 724 ------------YEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 724 ------------~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
...++.. ..+.++|||+........+...|..
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~---------------------------------- 509 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMY---------------------------------- 509 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHH----------------------------------
Confidence 0000100 1134555555544333333332221
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhC---CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHH
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~---g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2114)
..+++..+||+++..+|..+++.|.+ +..-+|++|.+.+.|||+...++||.++..|+|. ...|
T Consensus 510 ---~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~----------~d~Q 576 (1033)
T PLN03142 510 ---RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQ----------VDLQ 576 (1033)
T ss_pred ---cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChH----------HHHH
Confidence 12456677999999999999999964 3346789999999999999999999966666554 6999
Q ss_pred hhcccCCCCCCCceEEEEEcCCCc
Q 000129 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
++|||-|.|..+.-.+|.+++.+.
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999766666666666654
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-13 Score=184.12 Aligned_cols=351 Identities=15% Similarity=0.190 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.+.|+|.+.+.-++ ..+.+.|++-..|.|||+.+. +++..+... ...+ .+|||||. +++.++.+.+. +|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~~g--p~LIVvP~-SlL~nW~~Ei~-kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGITG--PHMVVAPK-STLGNWMNEIR-RFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCCCC--CEEEEeCh-HHHHHHHHHHH-HHCC
Confidence 68899999998764 456679999999999999874 444444331 2233 78999996 67788888887 4543
Q ss_pred CCCcEEEEEcCCcccchh------hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDLK------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
..++..++|....... .....+|+|+|.+.+....... .--..++||+||||.+..... .+++
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L----~k~~W~~VIvDEAHrIKN~~S-----klsk 312 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL----KRFSWRYIIIDEAHRIKNENS-----LLSK 312 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh----ccCCCCEEEEcCccccCCHHH-----HHHH
Confidence 4678888886543211 1134589999998864322211 112467999999999975432 1111
Q ss_pred HHHHHhhcCCCceEEEEcccCCC--hhH------------------HHHHhcCCCCc-----eeecCCCCCc--------
Q 000129 1491 MRYIASQVENKIRIVALSTSLAN--AKD------------------LGEWIGATSHG-----LFNFPPGVRP-------- 1537 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n--~~d------------------la~wl~~~~~~-----~~~f~~~~rp-------- 1537 (2114)
....+... ..++||+|+-. ..+ +..|+...... +-.+..-.+|
T Consensus 313 ---alr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 313 ---TMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred ---HHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 11122233 44788999732 223 33333321100 0000000000
Q ss_pred -----cC-cEEEEecccccchHHH-----HH----hc----CH-HHHHHHHHH-hcCCCCEEE--------EeCChH---
Q 000129 1538 -----VP-LEIHIQGVDITNFEAR-----MQ----AM----TK-PTFTAIVQH-AKNEKPALV--------FVPSRK--- 1585 (2114)
Q Consensus 1538 -----v~-l~~~~~~~~~~~~~~~-----~~----~~----~~-~~~~~i~~~-l~~~~~~LV--------Fv~sr~--- 1585 (2114)
.| ....+..+........ +. .+ .. .....+... .....|.|+ +.....
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 01 0111111111110000 00 00 00 000000000 000011110 000000
Q ss_pred ---HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC---C
Q 000129 1586 ---YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG---K 1659 (2114)
Q Consensus 1586 ---~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g---~ 1659 (2114)
....+ ..|...+...+ .+..+.+ .....++.+.+. + ...+++...+||+++..+|..+++.|.+. .
T Consensus 469 ~SgKl~lL-dkLL~~Lk~~g--~KVLIFS---Qft~~LdiLed~-L-~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~ 540 (1033)
T PLN03142 469 NSGKMVLL-DKLLPKLKERD--SRVLIFS---QMTRLLDILEDY-L-MYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEK 540 (1033)
T ss_pred hhhHHHHH-HHHHHHHHhcC--CeEEeeh---hHHHHHHHHHHH-H-HHcCCcEEEECCCCCHHHHHHHHHHhccccCCc
Confidence 00001 11111111110 1101110 011111111111 1 22356788899999999999999999753 3
Q ss_pred ceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1660 IKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1660 i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.-+|++|.+++.|||+....+|| +++.+.++....|++|||-|.|....-.++.|+....
T Consensus 541 ~VfLLSTrAGGlGINLt~Ad~VI----------iyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 541 FVFLLSTRAGGLGINLATADIVI----------LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred eEEEEeccccccCCchhhCCEEE----------EeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 46799999999999999999999 7899999999999999999998777777788877764
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=190.26 Aligned_cols=331 Identities=15% Similarity=0.069 Sum_probs=200.5
Q ss_pred ccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---
Q 000129 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (2114)
Q Consensus 518 APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--- 594 (2114)
+.+|||||.+|+-.+-..+..++ .+|+++|..+|+.|+.++|+++|+ +..|..++++.+..++.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~Gk-----------~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAGR-----------GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcCC-----------eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 34699999999998888887642 799999999999999999999885 25688899887655432
Q ss_pred ----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc--ccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL--HDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 595 ----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l--~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
.+...|+|+| ++.-+..+.++++|||||-|-- .++++|.+.. |-+...+....++.+|+.||
T Consensus 234 ~~~~~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha---RdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA---REVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccH---HHHHHHHHHHcCCcEEEECC
Confidence 2467899999 4445677899999999999953 2345555432 21222233457899999999
Q ss_pred ccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC----chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000129 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2114)
Q Consensus 669 Tlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2114)
| |..+.......... ..+.......+...-..++++.... +....-..+...+++.+.+....+|+|||+|.|.
T Consensus 302 T-PSles~~~~~~g~~-~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrG 379 (665)
T PRK14873 302 A-RTAEAQALVESGWA-HDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRG 379 (665)
T ss_pred C-CCHHHHHHHhcCcc-eeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCC
Confidence 9 65544433221110 0000000001110111223322110 0000001144556677777776559999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc---------ccCc--------------chhhhhccCceEEec
Q 000129 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD---------MVKS--------------NDLKDLLPYGFAIHH 801 (2114)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~---------~~~~--------------~~L~~ll~~gv~~hH 801 (2114)
.+..+...=+.....+..+...+..+.......|..|. .|.. +.|+.+++ .
T Consensus 380 yap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP------~ 453 (665)
T PRK14873 380 YVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP------G 453 (665)
T ss_pred CCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC------C
Confidence 88776666565555555554444433222222233332 2222 22333333 1
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEech----HhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 802 AGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
...-+.++..+.+.|. ++.+|||+|. .++ | ++ ..-+|++.+...+.+..+..+-...-++|-+|||||..
T Consensus 454 ~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~-~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-- 527 (665)
T PRK14873 454 VPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY-GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-- 527 (665)
T ss_pred CCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc-eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC--
Confidence 2222334556888997 5999999998 666 3 22 23345555555554555556667888999999999954
Q ss_pred CceEEEEEcC
Q 000129 878 SYGEGIIITG 887 (2114)
Q Consensus 878 ~~G~~iil~~ 887 (2114)
..|+++|.+.
T Consensus 528 ~~G~V~iq~~ 537 (665)
T PRK14873 528 DGGQVVVVAE 537 (665)
T ss_pred CCCEEEEEeC
Confidence 6799999863
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-13 Score=177.72 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+......+.++||||+|++.|+.++..|.. .+..+.++||+
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~-----------------------------------~gi~~~~~h~~ 479 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE-----------------------------------LGIKVRYLHSD 479 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh-----------------------------------cceeEEEEECC
Confidence 3445555556788999999999999999876632 23457889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
++..+|..+++.|+.|.+.|||||+.+++|+|+|.+.+|| .++.. .+..|.+..+|+||+|||||. ..|.|+
T Consensus 480 ~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~e-ifG~~~~~~~yiqr~GR~gR~---~~G~~i 551 (652)
T PRK05298 480 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKVI 551 (652)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCc-ccccCCCHHHHHHHhccccCC---CCCEEE
Confidence 9999999999999999999999999999999999999887 22221 344577899999999999994 589999
Q ss_pred EEeecCc
Q 000129 1723 ILCHAPR 1729 (2114)
Q Consensus 1723 il~~~~~ 1729 (2114)
+++....
T Consensus 552 ~~~~~~~ 558 (652)
T PRK05298 552 LYADKIT 558 (652)
T ss_pred EEecCCC
Confidence 9998543
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=177.61 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+|++.++.++..|.+.+.. +.+.||+++..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~-------------------------------------~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIK-------------------------------------VRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccc-------------------------------------eeeeeCCCCHHHHHH
Confidence 3679999999999999999999876432 456799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|+.|.++|||||+.+++|+|+|++.+||. +|....+ ..-+..+|+||+|||||. ..|.++++++..+.
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCH
Confidence 999999999999999999999999999998887 4432110 112778999999999996 47999999887553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=177.16 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHH---HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 491 KGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 491 ~g~~~l~~iQ~~---~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
.|| +.++-|.+ ++..++.++..+++.|+||+|||++|++|++.... +.++|+++||++|+.|+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~------------~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD------------QRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC------------CCcEEEEeCcHHHHHHHH
Confidence 565 68999998 55666777888999999999999999999887531 247999999999999995
Q ss_pred -HHHHHhhccCCcEEEEEeC
Q 000129 568 -GNLSNRLQMYDVKVRELSG 586 (2114)
Q Consensus 568 -~~~~~~~~~~gi~v~~l~G 586 (2114)
+.+..+.+.+++++..+.|
T Consensus 309 ~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 309 AEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHHHHHHHhcCCcEEEEEC
Confidence 5555544445666665554
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=176.77 Aligned_cols=346 Identities=14% Similarity=0.174 Sum_probs=199.3
Q ss_pred CCCHHHHH---HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH-HHHHHHhcC
Q 000129 1341 HFNPIQTQ---VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q---~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~-~~~~~~f~~ 1416 (2114)
++++-|.+ ++...+.++..+++.|+||+|||++|++|++... .+. ++|+++||++|+.|+. +++. .+++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~--~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQR--QIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCC--cEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 68999998 4445566778899999999999999999988643 123 8999999999999995 5555 5666
Q ss_pred CCCcEEEEEcCCccc------------------------------------c----------------------------
Q 000129 1417 GLGMRVVELTGETAM------------------------------------D---------------------------- 1432 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~------------------------------------~---------------------------- 1432 (2114)
..++++..+.|.... |
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 566666544331100 0
Q ss_pred ----------hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC----CCch--HHHHHH-------
Q 000129 1433 ----------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ----GGPV--LEVIVS------- 1489 (2114)
Q Consensus 1433 ----------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~----~g~~--le~i~s------- 1489 (2114)
.+....++|||+.-.-+...+.. ...+...+.+||||||++.+. .+.. +..+..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~---~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQD---DKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhh---ccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 00123458888887765543322 234667899999999987531 1110 000000
Q ss_pred -------------------------------------------HHHHHH-----------hh------------------
Q 000129 1490 -------------------------------------------RMRYIA-----------SQ------------------ 1497 (2114)
Q Consensus 1490 -------------------------------------------rl~~i~-----------~~------------------ 1497 (2114)
.+..+. ..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 000000 00
Q ss_pred ---------------cCCCceEEEEcccCC--ChhHHHHHhcCCCCceeecCCCCCccCcEEEEe-cccccch--HHHHH
Q 000129 1498 ---------------VENKIRIVALSTSLA--NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-GVDITNF--EARMQ 1557 (2114)
Q Consensus 1498 ---------------~~~~~riV~lSATl~--n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~-~~~~~~~--~~~~~ 1557 (2114)
++....+|++|||++ +..++.+.+|.........+..+... ..+.+. ..+.... ....
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~-~~~~i~~~~p~~~~~~~~~~- 632 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQD-QLVVVDQDMPLVTETSDEVY- 632 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHc-cEEEeCCCCCCCCCCChHHH-
Confidence 011246799999995 22357888886532222221111111 111111 1221110 0111
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
.......+......+++++|+++|.+..+.++..|... ...+
T Consensus 633 --~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~-----------------------------------~~~~- 674 (820)
T PRK07246 633 --AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW-----------------------------------QVSH- 674 (820)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc-----------------------------------CCcE-
Confidence 11122222222245789999999999988887655210 0112
Q ss_pred eecC-CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCC---cEEEEEeeeEecC----------------Cc---Cc
Q 000129 1638 YLHE-GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA---HLVVVMGTQYYDG----------------QE---NA 1694 (2114)
Q Consensus 1638 ~~H~-~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~---~~vVI~gt~~yd~----------------~~---~~ 1694 (2114)
+..| +. .|..+.+.|+++.-.||++|..+.+|||+|+ ..+||.+.++-.+ +. .+
T Consensus 675 l~Qg~~~---~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~ 751 (820)
T PRK07246 675 LAQEKNG---TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDY 751 (820)
T ss_pred EEeCCCc---cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhe
Confidence 2222 22 2456889999998999999999999999973 4456655544322 11 11
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHHHHHHHHHhc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLRLT 1740 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~~~~~~lRl~ 1740 (2114)
..|.-+..+.|-+||.-|.. +..|.++++=..- .+.|-+.|++.+
T Consensus 752 ~lP~A~iklkQg~GRLIRs~-~D~Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 752 FLPMTILRLKQAIGRTMRRE-DQKSAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred eHHHHHHHHHHHhcccccCC-CCcEEEEEECCcccccHHHHHHHHhC
Confidence 12333567889999999974 5678666554432 344556666443
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=156.43 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=124.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++..+++.|.+++..++++..++++++|||||||.++..++++.+... ... +++|++|+++++.|+...+...+...
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~--~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-KGK--RVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-CCC--cEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 367899999999999987646799999999999999999999888762 233 89999999999999999998655432
Q ss_pred CCcEEEEEcCCccc-chh-hccCC-cEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAM-DLK-LLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~-~~~-~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~ 1493 (2114)
.+.....+.+.... ... ..... +++++|++.+........ .....++++|+||+|.+.. .... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~-------~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGD-------QLEK 152 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHH-------HHHH
Confidence 12445555554422 222 22333 999999999888777632 3567889999999999875 3222 2222
Q ss_pred HHhhcCCCceEEEEcccCCChhHHHHH
Q 000129 1494 IASQVENKIRIVALSTSLANAKDLGEW 1520 (2114)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n~~dla~w 1520 (2114)
+........+++++|||+++..+...+
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHH
Confidence 323335688999999999865444333
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-13 Score=161.56 Aligned_cols=278 Identities=21% Similarity=0.266 Sum_probs=180.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh-hc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LL 1436 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~-~l 1436 (2114)
+-++-+|||.||||.-| |+++.. .+ +.+|--|.|-||.++++++.+ .|+.+..+||+...... .-
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~ 257 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNG 257 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCC
Confidence 33667899999999655 566665 23 569999999999999998773 37889999997654321 12
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~ 1515 (2114)
..+..+=||-|+.. .-..+++.||||++++.+ .||..|...+--+. ...+.+.|=-|-++=.+
T Consensus 258 ~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~ 321 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVR 321 (700)
T ss_pred CcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHH
Confidence 24578888888632 124579999999999987 57776644332221 12333333222222122
Q ss_pred HHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHH
Q 000129 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM 1595 (2114)
Q Consensus 1516 dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~ 1595 (2114)
++.+-.|.. +......|-.|+.+. ......+ .. -..+.++| |=|++....+...+
T Consensus 322 ~i~k~TGd~----vev~~YeRl~pL~v~-----------------~~~~~sl-~n-lk~GDCvV-~FSkk~I~~~k~kI- 376 (700)
T KOG0953|consen 322 KILKMTGDD----VEVREYERLSPLVVE-----------------ETALGSL-SN-LKPGDCVV-AFSKKDIFTVKKKI- 376 (700)
T ss_pred HHHhhcCCe----eEEEeecccCcceeh-----------------hhhhhhh-cc-CCCCCeEE-EeehhhHHHHHHHH-
Confidence 222222221 111112222232211 1111111 11 12344444 44566665554433
Q ss_pred HhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEecCcccccc
Q 000129 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCWGV 1673 (2114)
Q Consensus 1596 ~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~--g~i~VLVaT~~la~Gv 1673 (2114)
.....+.+++++|+|+++.|..--.+|.+ +..+|||||+...+|+
T Consensus 377 ---------------------------------E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGL 423 (700)
T KOG0953|consen 377 ---------------------------------EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGL 423 (700)
T ss_pred ---------------------------------HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccc
Confidence 12234568999999999999999999987 8999999999999999
Q ss_pred CCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEe
Q 000129 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILC 1725 (2114)
Q Consensus 1674 dip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~ 1725 (2114)
|+.-.++|......|+|++- .+++..+..|.+|||||-|.. ..|.+..|.
T Consensus 424 NL~IrRiiF~sl~Kysg~e~--~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 424 NLNIRRIIFYSLIKYSGRET--EDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred ccceeEEEEeecccCCcccc--eeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 99999999988899998864 678899999999999997533 246555554
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-13 Score=172.31 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
++++|--.-- +++.+ -|.-..||-|||+++.||+.-....++ -|-+|+..--||.-=.+.+...+.
T Consensus 139 ~ydVQLiGgi-vLh~G--~IAEM~TGEGKTLvatlp~yLnAL~G~-----------gVHvVTvNDYLA~RDaewm~p~y~ 204 (1025)
T PRK12900 139 PYDVQLIGGI-VLHSG--KISEMATGEGKTLVSTLPTFLNALTGR-----------GVHVVTVNDYLAQRDKEWMNPVFE 204 (1025)
T ss_pred ccchHHhhhH-HhhcC--CccccCCCCCcchHhHHHHHHHHHcCC-----------CcEEEeechHhhhhhHHHHHHHHH
Confidence 4556654433 33443 378899999999999999876665542 255666777788888888888888
Q ss_pred cCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 576 MYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
.+|++|+....+.+...+ ..-.++|+++|.--+ |.|.-+.. .........+.||||||.+
T Consensus 205 flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSv 270 (1025)
T PRK12900 205 FHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSV 270 (1025)
T ss_pred HhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhh
Confidence 999999998776554433 345899999998764 54433321 1234466789999999965
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=167.92 Aligned_cols=367 Identities=18% Similarity=0.203 Sum_probs=217.5
Q ss_pred ccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCC--cEEEEccC
Q 000129 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSAD--NILLCAPT 520 (2114)
Q Consensus 443 ~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~--nvlv~APT 520 (2114)
+.+.+.+....+|.+-|+.+|-....+|..+..... |+- -++.-..++|+|.+.+...+.++. .-+|+.|.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npd---l~i----dLKPst~iRpYQEksL~KMFGNgRARSGiIVLPC 329 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPD---LDI----DLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPC 329 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCC---CCc----CcCcccccCchHHHHHHHHhCCCcccCceEEEec
Confidence 556666666778888889999877666654332111 110 112346899999999999987653 57888999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceE
Q 000129 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQI 600 (2114)
Q Consensus 521 GsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~I 600 (2114)
|+|||++..-++.. + +..+|+++..---+.|+...|..+..--.-.++.+|.|.... ...++.|
T Consensus 330 GAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~--~~~~~gv 393 (776)
T KOG1123|consen 330 GAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER--FPSGAGV 393 (776)
T ss_pred CCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc--CCCCCcE
Confidence 99999987655432 2 126899999988899999998876543345678888876432 2357889
Q ss_pred EEcCHhHHHHHHhccC------CCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh
Q 000129 601 IVTTPEKWDIITRKSG------DRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 601 iV~TPek~d~l~r~~~------~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~ 673 (2114)
+|+|.-++..-.+++. +...-+..+++++||+|.+.. .++.++..+-+ .++ +||+|||-..
T Consensus 394 vvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a-----------HcK-LGLTATLvRE 461 (776)
T KOG1123|consen 394 VVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA-----------HCK-LGLTATLVRE 461 (776)
T ss_pred EEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH-----------Hhh-ccceeEEeec
Confidence 9999875422211111 111224468999999998764 33333332222 233 8999998532
Q ss_pred HH--------------HHHHHhccccCceEeecCCcccccceeEEEeeccCc-hhHH--HHHhhHH----HHHHHHHHh-
Q 000129 674 ED--------------VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQR--FQLMNDL----CYEKVVAVA- 731 (2114)
Q Consensus 674 ~d--------------va~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~-~~~~--~~~~~~~----~~~~i~~~~- 731 (2114)
+| -++|+.......+-.......-+|....|+...... ..++ +..||.. |--.+.-+.
T Consensus 462 DdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~ 541 (776)
T KOG1123|consen 462 DDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER 541 (776)
T ss_pred cccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh
Confidence 22 134443321111111111111222222211100000 0011 1112211 111111222
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++|||..+.-.-...|-.| |=.+.+|..++.+|..
T Consensus 542 RgDKiIVFsDnvfALk~YAikl------------------------------------------~KpfIYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQNERMK 579 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHc------------------------------------------CCceEECCCchhHHHH
Confidence 3668999987765443333322 2235699999999999
Q ss_pred HHHHHh-CCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC--CC--ceEEEEEc
Q 000129 812 VEDLFG-DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DS--YGEGIIIT 886 (2114)
Q Consensus 812 v~~~F~-~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~--~G~~iil~ 886 (2114)
+++.|+ +..++.++-.-+....+|+|..+|+|.-...+ | |..+=.||.||.-|+-. |. ...-|-++
T Consensus 580 ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~----G-----SRRQEAQRLGRILRAKk~~de~fnafFYSLV 650 (776)
T KOG1123|consen 580 ILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG----G-----SRRQEAQRLGRILRAKKRNDEEFNAFFYSLV 650 (776)
T ss_pred HHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc----c-----chHHHHHHHHHHHHHhhcCccccceeeeeee
Confidence 999998 56788899999999999999999999743333 2 56688999998777521 11 12334455
Q ss_pred CCCcHHHHH
Q 000129 887 GHSELRYYL 895 (2114)
Q Consensus 887 ~~~e~~~~~ 895 (2114)
+.+..+.|.
T Consensus 651 S~DTqEM~Y 659 (776)
T KOG1123|consen 651 SKDTQEMYY 659 (776)
T ss_pred ecchHHHHh
Confidence 555444443
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=155.27 Aligned_cols=164 Identities=27% Similarity=0.355 Sum_probs=120.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
++.+++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 5678999999999998876467999999999999999999998876542 2379999999999999999999
Q ss_pred HhhccCC-cEEEEEeCCCccCh--hhhccc-eEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHH
Q 000129 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2114)
Q Consensus 572 ~~~~~~g-i~v~~l~Gd~~~~~--~~~~~~-~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (2114)
..+.... .....+.|...... ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 44444544432111 112233 999999998754444432 3456789999999999876 555544444
Q ss_pred HHHHHHHHhhccccccEEEEccccCCh
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~ 673 (2114)
+.. .....+++++|||.++.
T Consensus 154 ~~~-------~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKL-------LPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHh-------CCccceEEEEecCCchh
Confidence 432 25678999999997743
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=154.81 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=119.7
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLI 738 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLV 738 (2114)
..|+|..|||..++ ++..- +-.+...-.||..|---.+.+... .... .++ +..+.. ...+.++||
T Consensus 386 ~~q~i~VSATPg~~-E~e~s-------~~~vveQiIRPTGLlDP~ievRp~--~~Qv---dDL-~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDY-ELEQS-------GGNVVEQIIRPTGLLDPEIEVRPT--KGQV---DDL-LSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChH-HHHhc-------cCceeEEeecCCCCCCCceeeecC--CCcH---HHH-HHHHHHHHhcCCeEEE
Confidence 56899999994433 33211 111233445665543322222221 1122 222 222333 344789999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC
Q 000129 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (2114)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~ 818 (2114)
-+-|++-|+.+..+|.+.+.. +.+.|+....-+|..++..++.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gik-------------------------------------v~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIK-------------------------------------VRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCce-------------------------------------EEeeeccchHHHHHHHHHHHhc
Confidence 999999999999999887643 5677999999999999999999
Q ss_pred CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|.++|||.-+.|-.|+|+|.|.+|.- .|..+-++ --|-.+++|-+|||.|. -.|++|++.+.
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998764 55543221 23777899999999994 57998888764
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-12 Score=170.87 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=94.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+|++.++.++..|.+.+. .+.++||+++..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 367999999999999999999876542 2566799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
+++.|+.|.+.|||||+.+++|+|+|++.+||. +|.+..+ -.-+..+|+||+|||||. ..|.++++++..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999999999999999999887 4432111 112778999999999994 579999999854
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-11 Score=170.93 Aligned_cols=135 Identities=19% Similarity=0.327 Sum_probs=91.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++++|||++|.+.-+.++..|....... ++.+.-=|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~~-----------------------------------~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEELE-----------------------------------GYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhccccc-----------------------------------CceEEecCCCCCCHHHH
Confidence 6789999999999999998886532110 11111124444567889
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCce--EEEEecceeccCCCC----------------ccccC----CHHHHHHhhcc
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (2114)
.+.|+.+.-.||++|..+..|||+|+- ..||-...||.++.. .|.++ ....+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999888999999999999999974 555555667764431 12333 35677999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCc
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~p 903 (2114)
.=|... ..|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~~-D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTET-DRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccCC-ceEEEEEecCccccchHHHHHHHhCC
Confidence 999754 46766665544344455554444455
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=166.91 Aligned_cols=282 Identities=21% Similarity=0.262 Sum_probs=172.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ .|...|.-....++.+.. .-+.||||.|||.-.++..+-...++ .+++||+||..|+.|.+++++
T Consensus 80 G~-~~ws~QR~WakR~~rg~S-FaiiAPTGvGKTTfg~~~sl~~a~kg-----------kr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKS-FAIIAPTGVGKTTFGLLMSLYLAKKG-----------KRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCc-eEEEcCCCCchhHHHHHHHHHHHhcC-----------CeEEEEecCHHHHHHHHHHHH
Confidence 44 899999999999887755 99999999999987666555444332 389999999999999999999
Q ss_pred HhhccCC-cEEEE-EeCCCccChh-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CC--
Q 000129 572 NRLQMYD-VKVRE-LSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR-- 639 (2114)
Q Consensus 572 ~~~~~~g-i~v~~-l~Gd~~~~~~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r-- 639 (2114)
++....| ..+.. ++|..+.... ..++.+|+|+|.. .+.++...... -++++|++|.+|.+.- .+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccH
Confidence 8775444 33333 5665443321 1247899999987 33333211111 3579999999996632 11
Q ss_pred -------c---hhHHHH--HHHHHHHHh---------------------hccccccEEEEccccCChH----HHHHHHhc
Q 000129 640 -------G---PVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYE----DVALFLRV 682 (2114)
Q Consensus 640 -------g---~~le~i--v~rl~~~~~---------------------~~~~~~riv~lSATlpn~~----dva~~l~~ 682 (2114)
| .+++.. +.++.+... ......++|..|||..... -+...|+.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 1 111100 011111100 1123467899999975433 23333332
Q ss_pred cccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecC---hHHHHHHHHHHHHHhhc
Q 000129 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALE 759 (2114)
Q Consensus 683 ~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~ 759 (2114)
. .......+...+-.+....... .+.+ +.+.. +.-.||||+. +..++.++..|++.+++
T Consensus 303 e---------vG~~~~~LRNIvD~y~~~~~~e-------~~~e-lvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 303 E---------VGSGGEGLRNIVDIYVESESLE-------KVVE-LVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred c---------cCccchhhhheeeeeccCccHH-------HHHH-HHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 2 2211222221111111111111 1112 22223 4468999999 88899999999887755
Q ss_pred ccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEech----HhhhhcC
Q 000129 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVN 835 (2114)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVd 835 (2114)
.. ..|++ ....++.|..|+++|||..+ ++-||+|
T Consensus 365 a~-------------------------------------~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 365 AE-------------------------------------LIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred EE-------------------------------------Eeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 42 33653 36778999999999999864 7999999
Q ss_pred CCceEEEEecceeccCCC
Q 000129 836 LPAHTVIIKGTQIYNPEK 853 (2114)
Q Consensus 836 lP~v~vVI~~~~~yd~~~ 853 (2114)
+|.. |++...|..|+
T Consensus 403 LP~r---irYaIF~GvPk 417 (1187)
T COG1110 403 LPHR---IRYAVFYGVPK 417 (1187)
T ss_pred chhh---eeEEEEecCCc
Confidence 9974 33334477665
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-12 Score=150.59 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
.++..|......+.++||-+-|++.|+.+...|.. .+..+.++|+
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-----------------------------------~gikv~YlHS 478 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-----------------------------------LGIKVRYLHS 478 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-----------------------------------cCceEEeeec
Confidence 44566666667889999999999988877765532 3456899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
++..-+|..++...+.|.++|||.-+.+-.|+|+|.+.+|. -.|.. .-.+..|-.+++|-+|||.| ...|++
T Consensus 479 didTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA----IlDAD-KeGFLRse~SLIQtIGRAAR---N~~Gkv 550 (663)
T COG0556 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAAR---NVNGKV 550 (663)
T ss_pred cchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE----EeecC-ccccccccchHHHHHHHHhh---ccCCeE
Confidence 99999999999999999999999999999999999998875 12222 22345678899999999999 579999
Q ss_pred EEEeecCcHHHHHHHH-----HhccCCCCccccCCCccchHHHHHHHHH
Q 000129 1722 VILCHAPRKEYYKKFL-----RLTQNPNYYNLQGVSHRHLSDHLSELVE 1765 (2114)
Q Consensus 1722 iil~~~~~~~~~~~~l-----Rl~~nP~~y~l~~~s~~~l~~~lselve 1765 (2114)
+++...-. +.+++.+ |-...-.|-.-.++++..+...+.+++.
T Consensus 551 IlYAD~iT-~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~ 598 (663)
T COG0556 551 ILYADKIT-DSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILD 598 (663)
T ss_pred EEEchhhh-HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhh
Confidence 88775433 3344444 1111112223345566655554444433
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=158.57 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|.-..-.++.| -|....||+|||+++.+|+......+ ..+-+++|+--||.+-++.+..++
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~G-----------~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQG-----------RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHcC-----------CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 6788998888766654 37789999999999999988776654 268999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|.-+.. +......+.+.||||||.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3345799999999874 44433321 1223455789999999965
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=159.13 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--.--. ++.+ -|....||+|||+++.+|++.....+ ..+-+++|+.-||.+-++.+..++
T Consensus 82 ~~ydVQliGg~~-Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G-----------~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHEG--KIAEMRTGEGKTLVGTLAVYLNALSG-----------KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hccC--ccccccCCCCChHHHHHHHHHHHHcC-----------CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 456777655433 3333 58889999999999999998776654 268899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.++|+.+...+ ..-.++|+++|..-+ |.|..... .......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 9999999999998765432 345699999999874 54443321 1234477899999999976
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=161.99 Aligned_cols=409 Identities=16% Similarity=0.145 Sum_probs=255.8
Q ss_pred HHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000129 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2114)
Q Consensus 1350 ~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~ 1429 (2114)
+..+...++.++|-+.||+|||..++..||..+..........+++..|++..+..+++++.+.-+...|-.| |-.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv----gy~ 461 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC----GYN 461 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc----ccc
Confidence 3344455777999999999999999999999999866555567889999999999999888765544333333 221
Q ss_pred ccchhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEE
Q 000129 1430 AMDLKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2114)
Q Consensus 1430 ~~~~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~l 1507 (2114)
..-.... ..+-|..||-+-+...+-. -+..+.++|+||+|...- .+..+..++..|..+ -+.++++++
T Consensus 462 vRf~Sa~prpyg~i~fctvgvllr~~e~-----glrg~sh~i~deiherdv-~~dfll~~lr~m~~t----y~dl~v~lm 531 (1282)
T KOG0921|consen 462 VRFDSATPRPYGSIMFCTVGVLLRMMEN-----GLRGISHVIIDEIHERDV-DTDFVLIVLREMIST----YRDLRVVLM 531 (1282)
T ss_pred ccccccccccccceeeeccchhhhhhhh-----cccccccccchhhhhhcc-chHHHHHHHHhhhcc----chhhhhhhh
Confidence 1111111 2337999999986655443 356789999999996642 234444444444433 468899999
Q ss_pred cccCCChhHHHHHhcCCCCceee-------------------cCCCCCccCcEEEE-ecc---------------cccch
Q 000129 1508 STSLANAKDLGEWIGATSHGLFN-------------------FPPGVRPVPLEIHI-QGV---------------DITNF 1552 (2114)
Q Consensus 1508 SATl~n~~dla~wl~~~~~~~~~-------------------f~~~~rpv~l~~~~-~~~---------------~~~~~ 1552 (2114)
|||+ |.+-|..+++..+..... +.++ ++.+..... ..+ ..+.+
T Consensus 532 satI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 532 SATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhh
Confidence 9998 676777777654321100 0000 111110000 000 00000
Q ss_pred HHH-HHhcC--------HHHHHHHHHHhc---CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhH
Q 000129 1553 EAR-MQAMT--------KPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI 1620 (2114)
Q Consensus 1553 ~~~-~~~~~--------~~~~~~i~~~l~---~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 1620 (2114)
... ..+|. -.+..+++.++. -.+-++||.+.-.....+...+..+-
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~---------------------- 667 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ---------------------- 667 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh----------------------
Confidence 000 00111 112223332221 13558888888776655554443221
Q ss_pred hhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEe----cCC---cC
Q 000129 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY----DGQ---EN 1693 (2114)
Q Consensus 1621 ~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~y----d~~---~~ 1693 (2114)
...+.-.+.+...|+.+...+++.|++....|..+++++|.+++..+.+.++..||.....| ... .+
T Consensus 668 ------~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~ 741 (1282)
T KOG0921|consen 668 ------EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTH 741 (1282)
T ss_pred ------hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceee
Confidence 12233345688899999999999999999999999999999999999999988887433211 111 11
Q ss_pred -cCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH--HhccCCCCccc---cCCCccchHHH--------
Q 000129 1694 -AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL--RLTQNPNYYNL---QGVSHRHLSDH-------- 1759 (2114)
Q Consensus 1694 -~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l--Rl~~nP~~y~l---~~~s~~~l~~~-------- 1759 (2114)
..+..+.....||.||+|| -+.|.|..+|+....+.+.... |+...|..--. +-.-.-++-.|
T Consensus 742 ~Atvw~sktn~eqr~gr~gr---vR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~ 818 (1282)
T KOG0921|consen 742 YATVWASKTNLEQRKGRAGR---VRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPP 818 (1282)
T ss_pred eeeecccccchHhhcccCce---ecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCC
Confidence 1346678899999999999 5899999999876555444333 55555532211 00011112222
Q ss_pred HHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHh
Q 000129 1760 LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSS 1809 (2114)
Q Consensus 1760 lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~ 1809 (2114)
+-+.|+.+-..|...++.+..++ .|++|+..+..++.+...+++.-
T Consensus 819 p~dav~e~e~~l~~m~~ld~n~e----lt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 819 PYDAVIEAEAVLREMGALDANDE----LTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred chhhccCchHHHHHhhhhhccCc----ccchhhhhhhccCcccccceeee
Confidence 33556666677888888876543 78999999999999988777653
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-10 Score=160.52 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=88.7
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.++++|||++|.+..+.++..|..... ..++..+--|++...|..+.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~---------------------------------~~~~~ll~Qg~~~~~r~~l~ 797 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE---------------------------------LEGYVLLAQGVSSGSRARLT 797 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc---------------------------------ccCceEEecCCCCCCHHHHH
Confidence 467999999999998888866632111 11233333355556788999
Q ss_pred HHHhcCCceEEEecCccccccCCCCc---EEEEEeeeEecC----------------CcC---cCCCCCHhHHHHhHccc
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAH---LVVVMGTQYYDG----------------QEN---AHTDYPVTDLLQMMGHA 1710 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~---~vVI~gt~~yd~----------------~~~---~~~~~s~~~~lQr~GRA 1710 (2114)
+.|+++.-.||++|..+..|||+|+. .|||.+.++-.+ +.. +..|.-+..+.|-+||.
T Consensus 798 ~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRl 877 (928)
T PRK08074 798 KQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRL 877 (928)
T ss_pred HHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhh
Confidence 99999988999999999999999973 456656554211 111 12233366788999999
Q ss_pred CCCCCCCceEEEEEeecCc-HHHHHHHHHhc
Q 000129 1711 SRPLLDNSGKCVILCHAPR-KEYYKKFLRLT 1740 (2114)
Q Consensus 1711 GR~~~~~~G~~iil~~~~~-~~~~~~~lRl~ 1740 (2114)
-|.. +..|.++++-..-. +.|=+.|++.+
T Consensus 878 IRs~-~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 878 IRTE-TDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred cccC-CceEEEEEecCccccchHHHHHHHhC
Confidence 9975 56776666554433 33445555443
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=132.23 Aligned_cols=141 Identities=29% Similarity=0.444 Sum_probs=101.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh---
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK--- 1434 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--- 1434 (2114)
+++++.+|||+|||.++..++.+.+.. ...+ +++|++|++.++.|....+...+.. +..+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 368999999999999998888887765 2334 8999999999999999988855442 5677777776554422
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
.....+|+++|++.+........ ......+++|+||+|.+....... .. +... .......+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~---~~--~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGL---LG--LKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHH---HH--HHHH-hhCCccceEEEEeccC
Confidence 24567999999999876655432 235578999999999886543111 10 1111 2235678999999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-12 Score=142.96 Aligned_cols=151 Identities=23% Similarity=0.327 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1341 HFNPIQTQVFTVLYN------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
.|+++|.+++..+.+ ...++++.+|||||||.++...+.+... ++++++|++.|+.|..+.|. .+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~-~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFD-DF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHH-Hh
Confidence 589999999999874 2577999999999999999765554332 79999999999999999996 34
Q ss_pred cCCCCcEEEEEc------------CCcccc---hhhccCCcEEEEChhhHHHHHhhh---------cccccccceeEEEe
Q 000129 1415 GQGLGMRVVELT------------GETAMD---LKLLEKGQIIISTPEKWDALSRRW---------KQRKYVQQVSLFII 1470 (2114)
Q Consensus 1415 ~~~~g~~v~~l~------------G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~---------~~~~~l~~v~liIi 1470 (2114)
... ...+.... ...... .......+++++|..+|....+.. .........++||+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 432 11111110 000001 122345689999999998766531 12234567899999
Q ss_pred cccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1471 DELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1471 DEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
||||++.+..+ +..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 99998753221 222222 45778999999984
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-11 Score=155.70 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=90.3
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.|+||||+|+..++.++..|... +.....+|+ .+.+|...
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~-----------------------------------gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAK-----------------------------------RIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHc-----------------------------------CCCceeecC--CHHHhHHH
Confidence 46789999999999998888766431 233567886 58899999
Q ss_pred HHHHhcCCceEEEecCccccccCCC---Cc-----EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLT---AH-----LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip---~~-----~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
+..|+.+...|+|||++++||+||+ .+ .+|| +...+.+...|.|++|||||. |.+|.++.
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI----------gterhes~Rid~Ql~GRtGRq--GdpGsS~f 706 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL----------GSERHESRRIDRQLRGRAGRQ--GDPGESVF 706 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee----------CCCCCchHHHHHHHhhhhhcC--CCCcceEE
Confidence 9999999999999999999999999 34 2446 566788889999999999998 78999999
Q ss_pred EeecCc
Q 000129 1724 LCHAPR 1729 (2114)
Q Consensus 1724 l~~~~~ 1729 (2114)
|++..+
T Consensus 707 fvSleD 712 (1025)
T PRK12900 707 YVSLED 712 (1025)
T ss_pred EechhH
Confidence 888755
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=131.92 Aligned_cols=140 Identities=29% Similarity=0.378 Sum_probs=101.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
++++++|||+|||.+++..+.+....+. ..+++|++|+++|+.|..+.+...... ++.+..+.+......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 6899999999999999999888776521 238999999999999999999887765 677888887665443
Q ss_pred hh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 593 QQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 593 ~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.. ....+|+++|++.+........ ......+++||||+|.+......... ...........+++++|||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEecc
Confidence 32 4688999999998643333221 23456889999999998653211111 1111224567889999999
Q ss_pred c
Q 000129 670 L 670 (2114)
Q Consensus 670 l 670 (2114)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 4
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=146.46 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--..-.++.| + |....||+|||+++.+|++..... +. .+.+++|+.-||.+-++.+...|. .+|+
T Consensus 78 r~ydvQlig~l~Ll~G-~--VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~~ly~-~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAG-D--VIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMGPLYE-ALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCC-C--cccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHHHHHH-hcCC
Confidence 5777887777666653 3 678999999999999999876655 44 788999999999999998886554 4699
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhhhc----ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~liIiDEaH~l 1476 (2114)
+|+.++++.+.. .+..-.+||+++|..-+- ..+|... .......+.+.||||+|.+
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999987755 334457899999998752 1333211 1123455889999999954
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=142.38 Aligned_cols=316 Identities=14% Similarity=0.204 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1339 FKHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
-..++|+|.+.+..++.++ .+-+|..|-|+|||++..-|+. .-++ +||+++.+-.-+.|+...|+ .+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------tikK--~clvLcts~VSVeQWkqQfk-~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------TIKK--SCLVLCTSAVSVEQWKQQFK-QWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------eecc--cEEEEecCccCHHHHHHHHH-hhcc
Confidence 4578999999999998654 4689999999999998755543 1233 79999999999999888887 6776
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHh-hhcccc-----cccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR-RWKQRK-----YVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r-~~~~~~-----~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
.....++.+|++..... -..+.|+|+|..++..--+ .|...+ .-+..+++|+||+|.+.. ..+..+++-
T Consensus 371 i~d~~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---KMFRRVLSI 445 (776)
T ss_pred cCccceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---HHHHHHHHH
Confidence 66677888888765432 2356899999877543221 111111 124579999999998742 122223332
Q ss_pred HHHHHhhcCCCceEEEEcccCCChhH----H----------HHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1491 MRYIASQVENKIRIVALSTSLANAKD----L----------GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~d----l----------a~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
+.. .+ -+||+||+-..+| + +.|+.....+.+. .|.....-.+....-+...+
T Consensus 446 v~a-------Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA------~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 446 VQA-------HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA------KVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred HHH-------Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee------EEeeeeeecCCCHHHHHHHH
Confidence 221 22 2899999965332 1 4555443322211 00000000111111111110
Q ss_pred ----------HhcCHHHHHH----HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhh
Q 000129 1557 ----------QAMTKPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2114)
Q Consensus 1557 ----------~~~~~~~~~~----i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2114)
..|+...+.+ |.-|-..+.++|||..+.-.-...|
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA------------------------------- 560 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA------------------------------- 560 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH-------------------------------
Confidence 1122221211 1122234556777766654333333
Q ss_pred hhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHh
Q 000129 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVT 1701 (2114)
Q Consensus 1623 i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~ 1701 (2114)
+..|--+++|..++.+|..|++.|.- ..+.-++-+.+...++|+|..+++|.-..+|. |..
T Consensus 561 ---------ikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRR 622 (776)
T KOG1123|consen 561 ---------IKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRR 622 (776)
T ss_pred ---------HHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chH
Confidence 33456689999999999999999985 47899999999999999999999994333333 334
Q ss_pred HHHHhHcccCCCCC--C--CceEEEEEeecCcHH
Q 000129 1702 DLLQMMGHASRPLL--D--NSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1702 ~~lQr~GRAGR~~~--~--~~G~~iil~~~~~~~ 1731 (2114)
.=.||.||.-|+-. + -....|.+++....+
T Consensus 623 QEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 623 QEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 55799998777521 1 234455555554433
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=138.80 Aligned_cols=150 Identities=24% Similarity=0.307 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
+|+++|.+++..+.. ...++++.||||||||.++...+.+... ++++++|+++|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 589999999998874 2567999999999999999866665532 69999999999999999
Q ss_pred HHHHhhccCCcEEEEEe------------CCCccCh---hhhccceEEEcCHhHHHHHHhccC---------CCcccccc
Q 000129 569 NLSNRLQMYDVKVRELS------------GDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~------------Gd~~~~~---~~~~~~~IiV~TPek~d~l~r~~~---------~~~~l~~v 624 (2114)
.|...... ...+.... ....... ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 99654432 11111110 0001111 113467899999999854443211 11234567
Q ss_pred cEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
++||+||||++....+ +..++. .....+|+||||.
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp 182 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATP 182 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCc
Confidence 8999999998753111 222222 4577789999994
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.2e-10 Score=143.77 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=54.8
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh-cc--CCcEEE
Q 000129 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QM--YDVKVR 582 (2114)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~-~~--~gi~v~ 582 (2114)
.++..+..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. +. ..+++.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 3456677899999999999999999999877532 12489999999999999999887655 22 244554
Q ss_pred EEeC
Q 000129 583 ELSG 586 (2114)
Q Consensus 583 ~l~G 586 (2114)
.+.|
T Consensus 82 ~lkG 85 (636)
T TIGR03117 82 FFPG 85 (636)
T ss_pred EEEC
Confidence 4433
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=129.69 Aligned_cols=105 Identities=33% Similarity=0.518 Sum_probs=89.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.++++||||+++..++.+++.|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4679999999999999999888651 245788999999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
+.+.|.+|..+||+||+++++|+|+|..++||. ++++ .+..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~~------~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDLP------WSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCCC------CCHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999999988886 4443 26778999999999988 46777653
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=130.12 Aligned_cols=113 Identities=27% Similarity=0.363 Sum_probs=95.2
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCC
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls 1644 (2114)
..+......++++||||++...++.++..|.. ...++.++||+++
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~ 63 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDGS 63 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCCC
Confidence 33444433678999999999999888866632 2456899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
..+|..+.+.|.+|..+||++|+.+++|+|+|...+|| ..+.+.+..+++|++||+||.| ..|.++++
T Consensus 64 ~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi----------~~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 64 QEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----------NYDLPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE----------EeCCCCCHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999999999999888777 5677899999999999999984 47887764
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-12 Score=120.54 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=66.3
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
....+.++||+++..+|..+++.|.+|..+|||||+++++|||+|++++||. |+++. +..+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 3467899999999999999999999999999999999999999999999998 55543 7788999999999
Q ss_pred CCC
Q 000129 873 RPQ 875 (2114)
Q Consensus 873 R~g 875 (2114)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=141.32 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=52.3
Q ss_pred HHHHHHHH---HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1346 QTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1346 Q~q~~~~i---l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
|.+.+..+ +..+..+++.||||+|||++|++|++..+.. ..+. ++||++||++|+.|++++|. .+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~--rvlIstpT~~Lq~Ql~~~l~-~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQ--KIAIAVPTLALMGQLWSELE-RLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCc--eEEEECCcHHHHHHHHHHHH-HHH
Confidence 44444443 3557779999999999999999999987764 1234 99999999999999999888 455
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-10 Score=148.32 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHc----C--CC-cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1342 FNPIQTQVFTVLYN----T--DD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~----~--~~-nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
-..+|-+|++.+.. + .. =++-.|.||||||++=. =|+..+.. +..++|..+-.-.|.|.-|+-..+++++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD--DKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC--CCCCceEEEEccccceeccchHHHHHhc
Confidence 45699999998753 1 11 23445999999998753 33334444 2334588888999999999888888776
Q ss_pred cCCCCcEEEEEcCCcc----------------------c--------------------------------chhhccCCc
Q 000129 1415 GQGLGMRVVELTGETA----------------------M--------------------------------DLKLLEKGQ 1440 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~----------------------~--------------------------------~~~~l~~~~ 1440 (2114)
+-. .-..+++.|+.. . ..+.+-.+.
T Consensus 486 ~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 486 NLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred CCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 521 223333333110 0 001112348
Q ss_pred EEEEChhhHHHHHhhhcccc-ccc----ceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1441 IIISTPEKWDALSRRWKQRK-YVQ----QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1441 IIV~TPe~l~~l~r~~~~~~-~l~----~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
|+|||+.++....-..+... .+. .-+.|||||+|.+... .-.++.++-..... -..++++||||+|..
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~----~~~~L~rlL~w~~~--lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE----DLPALLRLVQLAGL--LGSRVLLSSATLPPA 637 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH----HHHHHHHHHHHHHH--cCCCEEEEeCCCCHH
Confidence 99999999876552211111 111 1368999999977532 22344444444333 368899999999874
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=118.50 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=70.3
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
+..+..+..+||+++..+|..+++.|.+|..+|||||+++++|+|+|.+.+|| .++.+.+..+|.|++||
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----------~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----------FYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----------ESSSESSHHHHHHHHTT
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----------ccccCCCHHHHHHHhhc
Confidence 34567899999999999999999999999999999999999999999999999 78889999999999999
Q ss_pred cCCCC
Q 000129 1710 ASRPL 1714 (2114)
Q Consensus 1710 AGR~~ 1714 (2114)
+||.|
T Consensus 74 ~~R~g 78 (78)
T PF00271_consen 74 AGRIG 78 (78)
T ss_dssp SSTTT
T ss_pred CCCCC
Confidence 99964
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=142.80 Aligned_cols=160 Identities=23% Similarity=0.221 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHc----CCC---cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 497 NRVQSRVYKSALS----SAD---NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~----~~~---nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
..+|-+|++.+.. +.+ =++-.|.||||||++=.- |+..+... ..+++..+..-.|.|.-|....
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~--------~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD--------KQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC--------CCCceEEEEccccceeccchHH
Confidence 4699999987754 111 245569999999986432 33344322 2356888888888888888888
Q ss_pred HHHhhccCCcEEEEEeCCCcc----------------------C-----hh---------------------------hh
Q 000129 570 LSNRLQMYDVKVRELSGDQTL----------------------T-----RQ---------------------------QI 595 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~----------------------~-----~~---------------------------~~ 595 (2114)
++++++--.-.++++.|+... + .. ..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 888765333334444442110 0 00 01
Q ss_pred ccceEEEcCHhHHHHHH--hccCCCcccc----cccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 596 EETQIIVTTPEKWDIIT--RKSGDRTYTQ----LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 596 ~~~~IiV~TPek~d~l~--r~~~~~~~l~----~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+.|+|||+..+-... -+.+. ..+. .-+.|||||+|.+ .+..-.++.+++..... .+.++++||||
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~-~~l~ll~La~svlVlDEVHaY----D~~~~~~L~rlL~w~~~--lG~~VlLmSAT 633 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGH-HIAPMLRLMSSDLILDEPDDY----EPEDLPALLRLVQLAGL--LGSRVLLSSAT 633 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccch-hHHHHHHhcCCCEEEECCccC----CHHHHHHHHHHHHHHHH--cCCCEEEEeCC
Confidence 13579999999863222 11111 1111 1267999999965 34444556666554443 46889999999
Q ss_pred cCC
Q 000129 670 LPN 672 (2114)
Q Consensus 670 lpn 672 (2114)
||.
T Consensus 634 LP~ 636 (1110)
T TIGR02562 634 LPP 636 (1110)
T ss_pred CCH
Confidence 995
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-11 Score=148.93 Aligned_cols=336 Identities=17% Similarity=0.165 Sum_probs=208.2
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEE
Q 000129 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (2114)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~ 583 (2114)
+-.+...++.++|-+.||+|||..+...||..+...... ..+-+++-.|++-.+..+++++..-- +-.++.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g------~~~na~v~qprrisaisiaerva~er---~e~~g~ 456 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG------ASFNAVVSQPRRISAISLAERVANER---GEEVGE 456 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc------ccccceeccccccchHHHHHHHHHhh---HHhhcc
Confidence 344556677799999999999999999999998876431 23468888999999999888876422 112222
Q ss_pred EeCCCc-cChh-hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccc
Q 000129 584 LSGDQT-LTRQ-QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2114)
Q Consensus 584 l~Gd~~-~~~~-~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ 661 (2114)
..|-.. +... ....--|..||-| .+.|..- .-+..+.++|+||+|.- .+...++..+++-+..+...+
T Consensus 457 tvgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiher-----dv~~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 457 TCGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHER-----DVDTDFVLIVLREMISTYRDL 526 (1282)
T ss_pred cccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhh-----ccchHHHHHHHHhhhccchhh
Confidence 222111 1000 1123458899988 4555432 34556889999999973 233344455556666778899
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEeecCCcccc--------------------cceeEEEe---------------
Q 000129 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--------------------PLSQQYIG--------------- 706 (2114)
Q Consensus 662 riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv--------------------~l~~~~~~--------------- 706 (2114)
+++++|||+ |-+-+..|++.-+.. ...+...|+ +....+..
T Consensus 527 ~v~lmsatI-dTd~f~~~f~~~p~~---~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n 602 (1282)
T KOG0921|consen 527 RVVLMSATI-DTDLFTNFFSSIPDV---TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMN 602 (1282)
T ss_pred hhhhhhccc-chhhhhhhhccccce---eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccc
Confidence 999999997 445566666543221 111111111 11000000
Q ss_pred -eccCchhH-HHHHhh--------HHHHHHHHHHhC----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCch
Q 000129 707 -IQVKKPLQ-RFQLMN--------DLCYEKVVAVAG----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV 772 (2114)
Q Consensus 707 -~~~~~~~~-~~~~~~--------~~~~~~i~~~~~----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~ 772 (2114)
........ -..+|. --+.+++..... .+-++||.+.-.....+..++.......
T Consensus 603 ~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg------------ 670 (1282)
T KOG0921|consen 603 ILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG------------ 670 (1282)
T ss_pred cccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc------------
Confidence 00000000 000000 001122222111 4678999999888888877776542111
Q ss_pred hHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCC
Q 000129 773 SREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852 (2114)
Q Consensus 773 ~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~ 852 (2114)
.+-.+.+...|+.+...++..|.+....|..+++++|.+++..+.+.++..||+....|-.-
T Consensus 671 ------------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~ 732 (1282)
T KOG0921|consen 671 ------------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKL 732 (1282)
T ss_pred ------------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeee
Confidence 11123344559999999999999999999999999999999999999988888755443211
Q ss_pred --C------CccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 853 --K------GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 853 --~------g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+ -..++.|.....||.||+||. .+|.|..+|+.-..+.+.
T Consensus 733 ~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 733 FTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALE 780 (1282)
T ss_pred eccccceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHH
Confidence 0 012677889999999999996 689999998865544433
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-09 Score=141.59 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=53.9
Q ss_pred hhcCCCCCCCHHHHHHHHH---HHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 488 PAFKGMTQLNRVQSRVYKS---ALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 488 ~~f~g~~~l~~iQ~~~i~~---~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
..++|| +.++-|.+.... ++.+ ++.++|-||||+|||++|++|++...... +.++||-+.|
T Consensus 19 ~~~~~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------~k~vVIST~T 87 (697)
T PRK11747 19 EQLPGF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------KKKLVISTAT 87 (697)
T ss_pred HhCCCC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------CCeEEEEcCC
Confidence 334566 689999985544 4555 36688999999999999999998765532 2379999999
Q ss_pred HHHHHHHHH
Q 000129 560 KALVAEVVG 568 (2114)
Q Consensus 560 raLa~q~~~ 568 (2114)
++|-.|+..
T Consensus 88 ~~LQeQL~~ 96 (697)
T PRK11747 88 VALQEQLVS 96 (697)
T ss_pred HHHHHHHHh
Confidence 999988863
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-09 Score=138.77 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--.--. ++.+ -|.-..||=|||+++.+|+.-....++ .|-+++..--||..=++.+...+
T Consensus 78 r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk-----------gVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALTGK-----------GVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhcCC-----------ceEEEecchhhhhhhHHHHHHHH
Confidence 567788766543 4433 478999999999999998865444432 46777888889998888999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+....+..... +..-.++|+++|..-+ |.|.-+.. .......+.+.||||||.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999999999887765443 3345799999998875 55543321 1233466789999999965
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-10 Score=144.36 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.+ -|....||+|||+++.+|++-.... +. .+.+++|+.-||.+-+..+...|. .+|+
T Consensus 82 ~~ydVQliGg~~L-h~G--~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~~l~~-~lGl 152 (913)
T PRK13103 82 RHFDVQLIGGMTL-HEG--KIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMRPLYE-FLGL 152 (913)
T ss_pred CcchhHHHhhhHh-ccC--ccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHHHHhc-ccCC
Confidence 4555554433223 323 5788999999999999999866555 33 788999999999999998885554 5699
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhH--HHHHhhhc---ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
+|++++|+.+.. .+..-.++|+++|..-+ |.|-.+.. .......+.++||||+|.+
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999987654 33445589999999875 32222111 1123467899999999955
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=139.28 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|--..-. +.. .-|..+.||.|||+++.+|+.-....+ ..|-+|+++..||..-++.+...+
T Consensus 76 r~ydvQlig~l~-L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDVQLIGGLV-LND--GKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCchHhhhhHh-hcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHHHHH
Confidence 467777765433 332 368899999999999999985443332 258899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+...++.+...+ ..-.++|+++|..-+ |.|.-+.. .....+.+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999887765543 345789999999764 55443321 1223456789999999965
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-09 Score=143.56 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
|..++|.|.+....++ ..++++++.||||+|||++.+.|.+........ ..+++|.+.|..-..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~--~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPE--VRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccc--cccEEEEcccchHHHHHHHHHHh
Confidence 8888999999888764 467889999999999999999999987664222 23899999999999999999984
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=135.06 Aligned_cols=340 Identities=18% Similarity=0.230 Sum_probs=197.4
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~---il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
-.++++|-+-++- +++.+-|.|+.-.-|=|||+.. ++++..+.... ..| .-+|++|.-.| ..+.++++ +|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G--PfLVi~P~StL-~NW~~Ef~-rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG--PFLVIAPKSTL-DNWMNEFK-RFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC--CeEEEeeHhhH-HHHHHHHH-HhC
Confidence 3688999887775 4667888999999999999875 44554554422 234 56899998666 44566666 566
Q ss_pred CCCCcEEEEEcCCcccchh----hcc--CCcEEEEChhhHHHHHhhhccccccc--ceeEEEecccccccCCCCchHHHH
Q 000129 1416 QGLGMRVVELTGETAMDLK----LLE--KGQIIISTPEKWDALSRRWKQRKYVQ--QVSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~~~----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~--~v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
+ ++++..++|+...... .+. .-+|+|+|.|....- ...++ ..+++||||+|+|-...
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d------k~~lk~~~W~ylvIDEaHRiKN~~------- 305 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD------KSFLKKFNWRYLVIDEAHRIKNEK------- 305 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh------HHHHhcCCceEEEechhhhhcchh-------
Confidence 4 7899999998654322 122 349999999985432 11222 35799999999997654
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCC-------------------hhHHHHHhcCCCCceeecCCCCCccCcEEEEeccc
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLAN-------------------AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n-------------------~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~ 1548 (2114)
+++..+.+.+....|+++...++.| +++|..|+..... .. .
T Consensus 306 -s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~-----~~--------------~ 365 (971)
T KOG0385|consen 306 -SKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC-----EG--------------D 365 (971)
T ss_pred -hHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc-----cc--------------C
Confidence 2222333333445554444444433 3455666654210 00 0
Q ss_pred ccchHHHHHhcCHHH-----HHHHHHHhcCCCCEEEEeCCh--------------------------HHHHHHHHHHHHh
Q 000129 1549 ITNFEARMQAMTKPT-----FTAIVQHAKNEKPALVFVPSR--------------------------KYVRLTAVDLMTY 1597 (2114)
Q Consensus 1549 ~~~~~~~~~~~~~~~-----~~~i~~~l~~~~~~LVFv~sr--------------------------~~a~~la~~L~~~ 1597 (2114)
.....++....+|- ...+...+-+.+-++|||+-. ..-..+...|.+.
T Consensus 366 -~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKc 444 (971)
T KOG0385|consen 366 -QELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKC 444 (971)
T ss_pred -HHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHh
Confidence 00001111111110 001111111222233333322 2223334444444
Q ss_pred hccC----Cccc-ccccCC-----C---cccchhhHhhhhH------------------HHHHHHhccceEeecCCCCHH
Q 000129 1598 SSMD----GDQK-SAFLLW-----P---AEEVEPFIDNIQE------------------EMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1598 ~~~~----~~~~-~~~l~~-----~---~~~l~~~~~~i~d------------------~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
|... +... .+|... . -.-+++++..+.+ +.....-++....+.|.++.+
T Consensus 445 cnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~e 524 (971)
T KOG0385|consen 445 CNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHE 524 (971)
T ss_pred cCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcH
Confidence 4321 0000 001100 0 0012222333221 111223345577788999999
Q ss_pred HHHHHHHHHhcC---CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1647 DQEVVSALFEAG---KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1647 dR~~v~~~F~~g---~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
+|...++.|... +.=.|++|...+-|||+-+..+|| -|+.+.++..=+|-+-||-|-|...+-+++.
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI----------lyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI----------LYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE----------EecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 999999999864 345789999999999999888888 5777778888889999999988788899999
Q ss_pred EeecCcH
Q 000129 1724 LCHAPRK 1730 (2114)
Q Consensus 1724 l~~~~~~ 1730 (2114)
+++++..
T Consensus 595 LitentV 601 (971)
T KOG0385|consen 595 LITENTV 601 (971)
T ss_pred EeccchH
Confidence 9988753
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=144.31 Aligned_cols=340 Identities=19% Similarity=0.283 Sum_probs=181.5
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (2114)
.-++|+|+|+.|++.++++ ++.-=+.+..|+|||..++- |...+.. .+++|++|..+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh------------hheEeecchHHHHHHHHH
Confidence 4568999999999998764 33333445679999998753 4444433 389999999999999999
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhh----------------------------hccceEEEcCHhHHHHHHhccCCCcc
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~----------------------------~~~~~IiV~TPek~d~l~r~~~~~~~ 620 (2114)
.|..- +.+.++...+++|...++.. ..+--|+++|...+-.+... ...-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcC
Confidence 99763 34566666666655433210 11334888888765433322 1234
Q ss_pred cccccEEEEeccccccc--CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce------Eeec
Q 000129 621 TQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL------FYFD 692 (2114)
Q Consensus 621 l~~v~liIiDEaH~l~d--~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~------~~f~ 692 (2114)
+..+++||.||||+-.. .-|.. .+-..|+.. .+.-+..+.+-|+||..-+.+-.+--.......+ ..|+
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 56789999999997532 01100 011111100 0011233457788883212111110000000000 0111
Q ss_pred CCccccc---------c---eeEEEeeccCchhHHH-------------HHhhHH--HHHHHHHHhC-------------
Q 000129 693 NSYRPVP---------L---SQQYIGIQVKKPLQRF-------------QLMNDL--CYEKVVAVAG------------- 732 (2114)
Q Consensus 693 ~~~rpv~---------l---~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~i~~~~~------------- 732 (2114)
+.+.... | ..-+..+........+ .....+ ++..+.+..+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 1111100 0 0001111111000000 000000 1222222111
Q ss_pred -CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh-hccCceEEec--CCCCHHH
Q 000129 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-LLPYGFAIHH--AGMTRGD 808 (2114)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~-ll~~gv~~hH--agl~~~~ 808 (2114)
-.+.|-||.+.+....++..+.... ... +.++++ .....+.+-| |.|...+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vv--------------------e~Y-----~~Elk~d~~nL~iSi~HvDGtmNal~ 513 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVV--------------------EAY-----DEELKKDFKNLKISIDHVDGTMNALE 513 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--------------------HHH-----HHHHHhcCCCceEEeecccccccHHH
Confidence 1235666666666666555443321 000 011111 1223345555 7899999
Q ss_pred HHHHHHH---HhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 809 RQLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 809 R~~v~~~---F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
|...+.. |....++||-..-.|+.|||+|+.+-||- +||.+ |..|++|-+||..|.... +-.+||+
T Consensus 514 R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~g-K~yGYII 582 (1518)
T COG4889 514 RLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAKG-KKYGYII 582 (1518)
T ss_pred HHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCcC-CccceEE
Confidence 9554443 45678999999999999999999998885 89987 899999999999995432 3344554
Q ss_pred c
Q 000129 886 T 886 (2114)
Q Consensus 886 ~ 886 (2114)
.
T Consensus 583 L 583 (1518)
T COG4889 583 L 583 (1518)
T ss_pred E
Confidence 3
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=144.84 Aligned_cols=341 Identities=18% Similarity=0.259 Sum_probs=180.1
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~---~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
-+.|+|+|++|+++.++ .++.-=+....|+|||..+ |-|.+.+.. . ++||++|+.+|..|+.+.|...-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~----~--~iL~LvPSIsLLsQTlrew~~~~- 230 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA----A--RILFLVPSISLLSQTLREWTAQK- 230 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh----h--heEeecchHHHHHHHHHHHhhcc-
Confidence 46899999999999865 2333445566799999987 445554443 2 89999999999999999998532
Q ss_pred CCCCcEEEEEcCCcccc------------------h-------hhccCC---cEEEEChhhHHHHHhhhcccccccceeE
Q 000129 1416 QGLGMRVVELTGETAMD------------------L-------KLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~------------------~-------~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (2114)
.+.++...++++.... . +..+++ -||++|.+.+..+-.. +..-+..+++
T Consensus 231 -~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDl 307 (1518)
T COG4889 231 -ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDL 307 (1518)
T ss_pred -CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccE
Confidence 2355555554433211 0 011122 5888998887655443 4556889999
Q ss_pred EEecccccccCC--CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHH-HHhcCCCCce---------------e
Q 000129 1468 FIIDELHLIGGQ--GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG-EWIGATSHGL---------------F 1529 (2114)
Q Consensus 1468 iIiDEaH~l~~~--~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla-~wl~~~~~~~---------------~ 1529 (2114)
||.||||+--+. .|.. +....++.. .+.-+..+.+-|+||+-=..+-+ .-.......+ .
T Consensus 308 iicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl 384 (1518)
T COG4889 308 IICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRL 384 (1518)
T ss_pred EEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcc
Confidence 999999954321 0100 001111100 00012234466777762110000 0000000000 0
Q ss_pred ecCCCCCc---cCcEEEEecccccchHHHHHh------------cCHH---HHHHHHHHhc-------------CCCCEE
Q 000129 1530 NFPPGVRP---VPLEIHIQGVDITNFEARMQA------------MTKP---TFTAIVQHAK-------------NEKPAL 1578 (2114)
Q Consensus 1530 ~f~~~~rp---v~l~~~~~~~~~~~~~~~~~~------------~~~~---~~~~i~~~l~-------------~~~~~L 1578 (2114)
.|...+.. ..-.+.+...+.......+.. +... +...+...-. +..++|
T Consensus 385 ~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAI 464 (1518)
T COG4889 385 GFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAI 464 (1518)
T ss_pred cHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHH
Confidence 11100000 000111111111111111100 0000 0111111100 012356
Q ss_pred EEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEe--ecCCCCHHHHHHHHHH--
Q 000129 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY--LHEGLNKTDQEVVSAL-- 1654 (2114)
Q Consensus 1579 VFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~--~H~~ls~~dR~~v~~~-- 1654 (2114)
-||.+.+....++..+-. -++.+...+. .......|.+ ..|.|...+|...+.+
T Consensus 465 aF~k~I~tSK~i~~sFe~------------------Vve~Y~~Elk----~d~~nL~iSi~HvDGtmNal~R~~l~~l~~ 522 (1518)
T COG4889 465 AFAKDIKTSKQIAESFET------------------VVEAYDEELK----KDFKNLKISIDHVDGTMNALERLDLLELKN 522 (1518)
T ss_pred HHHHhhHHHHHHHHHHHH------------------HHHHHHHHHH----hcCCCceEEeecccccccHHHHHHHHhccC
Confidence 677766666666544421 1222222221 1123333444 4477999998555443
Q ss_pred -HhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCC-CCceEEEEEe
Q 000129 1655 -FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL-DNSGKCVILC 1725 (2114)
Q Consensus 1655 -F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~-~~~G~~iil~ 1725 (2114)
|...+.+||---..++.|||+|+..-|| +|+++ .+..+++|-+||..|..- ...|..++=+
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsVi----Ff~pr------~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVI----FFDPR------SSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEE----EecCc------hhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 3567889999999999999999999999 56655 378999999999999532 2346555543
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-09 Score=135.79 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|--.--. ++.+ -|..+.||-|||+++.+|+.-....++ .|-+|++..-||..=++.+...+
T Consensus 85 r~ydVQliGgl~-Lh~G--~IAEM~TGEGKTL~atlpaylnAL~Gk-----------gVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMV-LHEG--QIAEMKTGEGKTLVATLPSYLNALTGK-----------GVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhh-hcCC--ceeeecCCCChhHHHHHHHHHHhhcCC-----------CeEEEeCCHHHHHhHHHHHHHHH
Confidence 566777665443 3333 588999999999999999876655432 58899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+...++.+...+ ..-.++|+++|+..+ |.|.-+. ........+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 9999999999887665443 345899999999885 4443332 11234567889999999965
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=145.48 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
..++++.|.+.+.. ++.++..+++.||||+|||+.|++|++....... .+++|.++|++|-.|..++
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~----------~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG----------KKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC----------CcEEEECCCHHHHHHHHHh
Confidence 45899999988754 4666677999999999999999999998875542 4799999999999999887
Q ss_pred HHHh
Q 000129 570 LSNR 573 (2114)
Q Consensus 570 ~~~~ 573 (2114)
....
T Consensus 83 ~~~~ 86 (654)
T COG1199 83 DLPI 86 (654)
T ss_pred hcch
Confidence 6553
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=136.22 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHH---cC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLY---NT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
.+++-|.+....++ .+ +..++|-||||+|||++|++|.+..... .+. ++||-+.|++|-.|+.
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHHHHH
Confidence 68999998666554 44 3668899999999999999999865554 244 8999999999999986
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=144.81 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHH---HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~i---l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
...+++.|.+....+ +.++..+++.||||+|||+.|++|++...... +. +++|.++|+.|-.|..++..
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~--~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GK--KVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CC--cEEEECCCHHHHHHHHHhhc
Confidence 558999999887764 55667799999999999999999999776652 23 89999999999999877644
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.9e-09 Score=128.89 Aligned_cols=327 Identities=20% Similarity=0.259 Sum_probs=188.2
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..|+++|.+-+.- .++++-|.|+.-.-|=|||+... +.+-.+.....-.| --+|++|.--| ..+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~G-------PfLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPG-------PFLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCC-------CeEEEeeHhhH-HHHHHHH
Confidence 3788999887764 45666789999999999998753 33333333222112 35789998776 5677788
Q ss_pred HHhhccCCcEEEEEeCCCccChhh------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (2114)
+++.. +++|..++||....... ....+|+|||.|.. .+... ...--..+++||||+|++....
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~---i~dk~-~lk~~~W~ylvIDEaHRiKN~~----- 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIA---IKDKS-FLKKFNWRYLVIDEAHRIKNEK----- 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHH---HhhHH-HHhcCCceEEEechhhhhcchh-----
Confidence 77644 78999999986432211 23789999999963 22110 0011125899999999986432
Q ss_pred HHHHHHHHHHhhccccccEEEEcccc----------------C----ChHHHHHHHhccccCce----EeecCCcccc--
Q 000129 645 SIVARTVRQIETTKEHIRLVGLSATL----------------P----NYEDVALFLRVNLEKGL----FYFDNSYRPV-- 698 (2114)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riv~lSATl----------------p----n~~dva~~l~~~~~~~~----~~f~~~~rpv-- 698 (2114)
+.+.++++.. ... .-+++|.|. | ..+++..|+......+. .......+|-
T Consensus 306 s~L~~~lr~f---~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREF---KTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHh---ccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 2333443332 222 347788881 1 23566666643210000 0000000000
Q ss_pred ------------ccee--EEEeec-------------------cCch--hHHH-HH---hhH------------------
Q 000129 699 ------------PLSQ--QYIGIQ-------------------VKKP--LQRF-QL---MND------------------ 721 (2114)
Q Consensus 699 ------------~l~~--~~~~~~-------------------~~~~--~~~~-~~---~~~------------------ 721 (2114)
|... .+++.. .... ..++ +. +.+
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 0000 111100 0000 0000 00 011
Q ss_pred ------------HHHHHHHHH--hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcc
Q 000129 722 ------------LCYEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2114)
Q Consensus 722 ------------~~~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (2114)
.+.++++.. ..+++||||..-.+ +-..|.+.+.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHHHHHH-----------------------------
Confidence 112222221 23779999964222 2223332221
Q ss_pred hhhhhccCceEEecCCCCHHHHHHHHHHHhCC---CceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 788 ~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
+..+...-..|.++.++|...++.|... ..-.|++|-+.+-|||+-+.++||-++.-|||.. =
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~----------D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQV----------D 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchh----------h
Confidence 1122334458999999999999999753 4557899999999999999999998776676653 5
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+|-+-||-|-|..+.-.+|.+++.+..
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchH
Confidence 677777777777788888988888654
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-08 Score=129.36 Aligned_cols=367 Identities=18% Similarity=0.139 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 494 TQLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
..++|+|.+.+.-++.. ..-+|+.=..|+|||+...-.|...+.+++.... ---+.+||+| ..|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~----~~~k~lVV~P-~sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP----LINKPLVVAP-SSLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc----cccccEEEcc-HHHHH
Confidence 47899999999866532 1126677778999999887777667776653211 1137899999 58899
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccCh---h-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTR---Q-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~---~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
-+.++|.+++....+.+..++|...... . ..-...|.+.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 9999999988766677777887765310 0 112456788888876322222 3455689999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc-cc-CceEeecCCccc----ccceeEE--Ee
Q 000129 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN-LE-KGLFYFDNSYRP----VPLSQQY--IG 706 (2114)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~-~~-~~~~~f~~~~rp----v~l~~~~--~~ 706 (2114)
+-....-.+.. +++ . .-.|-|+||.|+= -.++.+++..- .. .+.+--..+++. ..+...- ..
T Consensus 388 lkN~~s~~~ka-L~~-------l-~t~rRVLLSGTp~-QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 388 LKNSDSLTLKA-LSS-------L-KTPRRVLLTGTPI-QNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred ccchhhHHHHH-HHh-------c-CCCceEEeeCCcc-cccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 86544332222 222 2 3445689999943 23455544321 00 011100111110 0000000 00
Q ss_pred eccCchhHHHHHhhHHHHH--------HHHHHhCC-CeEEEEecChHHHHHHHHHHHHHh---------hc--------c
Q 000129 707 IQVKKPLQRFQLMNDLCYE--------KVVAVAGK-HQVLIFVHSRKETAKTARAIRDTA---------LE--------N 760 (2114)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~--------~i~~~~~~-~~vLVFv~sr~~~~~~a~~L~~~~---------~~--------~ 760 (2114)
-.......+++.|..++-. .+.+++++ .-.+|||+.-..=..+...|.+.. .. +
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 0000112223333333222 22233332 357889987655555555444420 00 0
Q ss_pred --cccc----------cccc-----------cC--ch--hH--HHHHhhh----cc-------cCc--------chhhhh
Q 000129 761 --DTLG----------RFLK-----------ED--SV--SR--EILQSHT----DM-------VKS--------NDLKDL 792 (2114)
Q Consensus 761 --~~l~----------~~l~-----------~~--~~--~~--~~l~~~~----~~-------~~~--------~~L~~l 792 (2114)
..+- .+.. .+ .. +. -.|...+ +. +.+ ..+...
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 0000 0000 00 00 00 0000000 00 000 122233
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCC--ce-EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGH--VQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~--i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
..+.+..+||.|+..+|+.+.+.|.+-. .. .|.+|-+.+.|+|+=+.+-||.++..|||. .=.|-++
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa----------~d~QAma 687 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPA----------VDQQAMA 687 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCch----------hHHHHHH
Confidence 3567778899999999999999997533 23 456778899999999888888877777765 3789999
Q ss_pred ccCCCCCCCceEEEEEcCCC
Q 000129 870 RAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~ 889 (2114)
||=|+|..+.-..|.+....
T Consensus 688 R~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HhccCCCcceEEEEEeecCC
Confidence 99999977666666666553
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-07 Score=129.23 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
..|..++|.|.+....+ +..++++++.||||+|||++.+.+.+....... ...|++|.+.|.+=..|..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHH
Confidence 34778899999987765 556788999999999999999999998765432 2248999999999888888
Q ss_pred HHHHHh
Q 000129 568 GNLSNR 573 (2114)
Q Consensus 568 ~~~~~~ 573 (2114)
+++++.
T Consensus 78 ~Elk~~ 83 (705)
T TIGR00604 78 EELRKL 83 (705)
T ss_pred HHHHhh
Confidence 888773
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-08 Score=126.90 Aligned_cols=127 Identities=20% Similarity=0.119 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.+ -|.-..||-|||+++.+|++-.... +. .+-+++..--||..=+..+. .+-..+|+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg-~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMG-KVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHH-HHHHHhCC
Confidence 4556665544333 323 4789999999999999988644443 33 45677777788876555444 34445799
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhhhc----ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~liIiDEaH~l 1476 (2114)
+|++...+.+.. .+..-.+||.++|...|- ..+|... .......+.+.||||+|.+
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999998876554 334446799999998762 2344211 1123456789999999954
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-08 Score=124.61 Aligned_cols=369 Identities=17% Similarity=0.157 Sum_probs=198.1
Q ss_pred CCCCCHHHHHHHHHHHc---------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-----CceEEEEEcccHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~---------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-----~~~k~l~I~Ptr~La~ 1404 (2114)
...++|+|.+.|.-++. +..-.|++=..|+|||+...-.|...+.+ .+. . ++|||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~--k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLIN--KPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCcccccc--ccEEEccH-HHHH
Confidence 35789999999998764 11226777788999999885555555555 455 4 88999995 5555
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch---h-hc------cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccc
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---K-LL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~-~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
-++++|.+-.+. ..+.+..+.|.....+ + .+ -..-|.+.+.+.+....+. .....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCC
Confidence 555555532221 1344555556544310 0 00 1125667777776544433 456789999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCC---CCceeecCCCCCccCcEEEEeccccc-
Q 000129 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT---SHGLFNFPPGVRPVPLEIHIQGVDIT- 1550 (2114)
Q Consensus 1475 ~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~---~~~~~~f~~~~rpv~l~~~~~~~~~~- 1550 (2114)
.+-+..+.++. ....+. -.|-|+||.|+- ..++.+++..- ..+++.-..+.+..--.....+-+..
T Consensus 387 rlkN~~s~~~k--------aL~~l~-t~rRVLLSGTp~-QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 387 RLKNSDSLTLK--------ALSSLK-TPRRVLLTGTPI-QNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred CccchhhHHHH--------HHHhcC-CCceEEeeCCcc-cccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCc
Confidence 98765422222 222223 345578888873 23455555332 11111100000000000000000000
Q ss_pred ---ch--HHH---HHhcCHHH-----HHHHHHHhcCCC-CEEEEeCChHHHHHHHHHHHHh-------------------
Q 000129 1551 ---NF--EAR---MQAMTKPT-----FTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTY------------------- 1597 (2114)
Q Consensus 1551 ---~~--~~~---~~~~~~~~-----~~~i~~~l~~~~-~~LVFv~sr~~a~~la~~L~~~------------------- 1597 (2114)
.. ..+ +..|.... -..+..+ -+++ -.+|||+.-..-..+...|...
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~-LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k 535 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTGDILLKY-LPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKK 535 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeecccchhhhh-CCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHH
Confidence 00 111 11111100 0112223 2332 3788888765444444444332
Q ss_pred -hccCCc--------ccccccC-----------CCccc---------chhhHhhhhH-------------------HHHH
Q 000129 1598 -SSMDGD--------QKSAFLL-----------WPAEE---------VEPFIDNIQE-------------------EMLK 1629 (2114)
Q Consensus 1598 -~~~~~~--------~~~~~l~-----------~~~~~---------l~~~~~~i~d-------------------~~L~ 1629 (2114)
|..... ....+.+ ....+ +..++..+.. +.+.
T Consensus 536 ~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~ 615 (776)
T KOG0390|consen 536 LCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLC 615 (776)
T ss_pred HhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHH
Confidence 110000 0000000 00000 0011111110 2233
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCc--e-EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHh
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKI--K-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i--~-VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2114)
...++.+..+||.|+..+|..+.+.|.+..- . .|.+|.+.+.|||+-+..-|| -++.+.+++.=.|-
T Consensus 616 ~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli----------l~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 616 RWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI----------LFDPDWNPAVDQQA 685 (776)
T ss_pred hhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE----------EeCCCCCchhHHHH
Confidence 3446779999999999999999999986432 3 566677889999987666555 37888899999999
Q ss_pred HcccCCCCCCCceEEEEEeecC--cHHHHHHHH
Q 000129 1707 MGHASRPLLDNSGKCVILCHAP--RKEYYKKFL 1737 (2114)
Q Consensus 1707 ~GRAGR~~~~~~G~~iil~~~~--~~~~~~~~l 1737 (2114)
++||=|+|....-.+|.|.... ++..|.+-.
T Consensus 686 maR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~ 718 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATGTIEEKIYQRQT 718 (776)
T ss_pred HHHhccCCCcceEEEEEeecCCCchHHHHHHHH
Confidence 9999999887888888887765 344554433
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-09 Score=105.03 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=64.2
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
...+..+||+|+..+|..+++.|.+|..+|||+|+++++|+|+|.+..||. ++++ .+..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLP------WSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCC------CCHHHHHHhhccccc
Confidence 456889999999999999999999999999999999999999998888886 4443 377889999999999
Q ss_pred CC
Q 000129 874 PQ 875 (2114)
Q Consensus 874 ~g 875 (2114)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-07 Score=110.81 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
+..|-|+|.+-+.-+++.+..+++.-.-|-|||..|+- |....... .-.++|+|- +|-..+.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraE-----------wplliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAE-----------WPLLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhc-----------CcEEEEecH-HHhHHHHHHHHH
Confidence 34677999999999999988899999999999999854 44433221 147889996 455667777777
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+|.... .+..+.+..+.-...-....|.|.+.+.+..+..... -...++||+||.|+|.+.+......++.
T Consensus 263 ~lps~~-pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~d---- 333 (689)
T KOG1000|consen 263 FLPSIH-PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATD---- 333 (689)
T ss_pred hccccc-ceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhh----
Confidence 765332 2444444433322222245688888887644433221 2236899999999998754333333322
Q ss_pred HHhhccccccEEEEccc
Q 000129 653 QIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSAT 669 (2114)
-...-.++|+||.|
T Consensus 334 ---llk~akhvILLSGT 347 (689)
T KOG1000|consen 334 ---LLKVAKHVILLSGT 347 (689)
T ss_pred ---HHHHhhheEEecCC
Confidence 12345678999999
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-07 Score=117.72 Aligned_cols=371 Identities=17% Similarity=0.186 Sum_probs=201.2
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHH--HHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICS--EFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~--~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
+..+.|+|+..+.-++ ..+.--|++-.-|=|||+.. .|+.+.+-. .-.+ .+|||||. .++.|+.++|. .
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k~~~--paLIVCP~-Tii~qW~~E~~-~ 276 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--KLTK--PALIVCPA-TIIHQWMKEFQ-T 276 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--cccC--ceEEEccH-HHHHHHHHHHH-H
Confidence 4578899999988765 34444789999999999653 344443331 1234 89999996 57788899888 4
Q ss_pred hcCCCCcEEEEEcCCccc------------c----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1414 FGQGLGMRVVELTGETAM------------D----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1414 f~~~~g~~v~~l~G~~~~------------~----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.. ..+|.+++|..+. + ......+.|+|+|.+.+- .......--..+++|+||.|.|-
T Consensus 277 w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 277 WWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred hCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecCccccc
Confidence 543 4688888875542 1 112235589999987642 21111111245899999999997
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC-CC-hhHHHHHhcCCCCcee----ecCCCCCccCcEEEEecccc-c
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL-AN-AKDLGEWIGATSHGLF----NFPPGVRPVPLEIHIQGVDI-T 1550 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl-~n-~~dla~wl~~~~~~~~----~f~~~~rpv~l~~~~~~~~~-~ 1550 (2114)
+..... .+ .+.++...-||| ||.|+ .| ..++-..+.-...+.. .|... ..+|+.. -++.. +
T Consensus 351 Npns~i---sl-----ackki~T~~RiI-LSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~-f~~pI~~--GgyaNAs 418 (923)
T KOG0387|consen 351 NPNSKI---SL-----ACKKIRTVHRII-LSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQN-FEHPINR--GGYANAS 418 (923)
T ss_pred CCccHH---HH-----HHHhccccceEE-eeCccccchHHHHHHHhhhccCCcccchHHHHhh-hhhheec--cccCCCC
Confidence 654222 22 122334455554 55554 44 2333322211110000 01110 1112211 11111 1
Q ss_pred chHHH----HH----hcCHH-----HHHHHHH-HhcCCCCEEEEeCChHHHHHHHHHHHHh-------------------
Q 000129 1551 NFEAR----MQ----AMTKP-----TFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTY------------------- 1597 (2114)
Q Consensus 1551 ~~~~~----~~----~~~~~-----~~~~i~~-~l~~~~~~LVFv~sr~~a~~la~~L~~~------------------- 1597 (2114)
..... .. ....| ....+.. .+....-.++||.--..-+.+++.+.+.
T Consensus 419 ~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~i 498 (923)
T KOG0387|consen 419 PRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDI 498 (923)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHH
Confidence 11000 00 01111 1111111 2223344899998766666666655321
Q ss_pred ----hccCCccccc---ccCCCcc--------cchhhHhhhhH------------------HHHHHHh----ccceEeec
Q 000129 1598 ----SSMDGDQKSA---FLLWPAE--------EVEPFIDNIQE------------------EMLKATL----RHGVGYLH 1640 (2114)
Q Consensus 1598 ----~~~~~~~~~~---~l~~~~~--------~l~~~~~~i~d------------------~~L~~~l----~~gV~~~H 1640 (2114)
|...+.-.+. ....+.. .++-+...+.+ ..+..++ ++....+.
T Consensus 499 LrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmD 578 (923)
T KOG0387|consen 499 LRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMD 578 (923)
T ss_pred HHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEec
Confidence 1110000000 0000000 01111111100 1222333 34456678
Q ss_pred CCCCHHHHHHHHHHHhcCCc--eEEEecCccccccCCCCc-EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1641 EGLNKTDQEVVSALFEAGKI--KVCVMSSSMCWGVPLTAH-LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i--~VLVaT~~la~Gvdip~~-~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
|..+...|....+.|.++.. =.|++|.+..-|+|+-+. +||| ++.+.++..=.|-.-||=|.|...
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----------fDPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----------FDPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----------ECCCCCCccchHHHHHHHhhcCcc
Confidence 99999999999999997753 367889999999999854 5555 666677777788888888887667
Q ss_pred ceEEEEEeecCc-------HHHHHHHH--HhccCCC
Q 000129 1718 SGKCVILCHAPR-------KEYYKKFL--RLTQNPN 1744 (2114)
Q Consensus 1718 ~G~~iil~~~~~-------~~~~~~~l--Rl~~nP~ 1744 (2114)
.-.+|.|..... +..|+.+| |++.||.
T Consensus 648 dV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~ 683 (923)
T KOG0387|consen 648 DVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPE 683 (923)
T ss_pred ceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 777788877653 23456666 7777774
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-09 Score=103.15 Aligned_cols=71 Identities=28% Similarity=0.390 Sum_probs=65.9
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
..++..+||+++..+|..+++.|++|...|||+|+++++|+|+|.+..|| ..+.+++..+|.||+||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi----------~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVI----------IYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEE----------EeCCCCCHHHHHHhhccccc
Confidence 56799999999999999999999999999999999999999999888777 45678999999999999999
Q ss_pred C
Q 000129 1713 P 1713 (2114)
Q Consensus 1713 ~ 1713 (2114)
.
T Consensus 81 ~ 81 (82)
T smart00490 81 A 81 (82)
T ss_pred C
Confidence 6
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=121.40 Aligned_cols=127 Identities=18% Similarity=0.124 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+ +.+ -|....||-|||+++.+|++-.... +. .+-+|+++.-||..=++.+.. +-+.+|+
T Consensus 85 r~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~~-vy~~LGL 155 (939)
T PRK12902 85 RHFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMGQ-VHRFLGL 155 (939)
T ss_pred CcchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHHH-HHHHhCC
Confidence 4455554433333 322 5889999999999999988754444 33 578999999999987776664 4445799
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhH--HHHHhhhc---ccccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
+|++..++.+.. .+..-.+||+++|+..+ |.|-.+.. .......+.+.||||+|.+
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 999998876655 34445679999999986 22222211 1224567889999999954
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-07 Score=120.73 Aligned_cols=303 Identities=14% Similarity=0.152 Sum_probs=161.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
+.-.+|-||.|||||.+..-++-..+.. .+.++++|+.+++|+.+...+|+...- .|+..-.-.++...
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~----------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN----------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC----------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 4457899999999998765444333221 245899999999999999999976421 12222111112111
Q ss_pred ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhH---HHHHHHHHHHHhhccccccEEEE
Q 000129 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL---ESIVARTVRQIETTKEHIRLVGL 666 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~l---e~iv~rl~~~~~~~~~~~riv~l 666 (2114)
.. ...+-+++..+ ++-|... ..+.++++|||||+-.+.. -+.+.+ +.+.+.+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12344555544 5555443 4567799999999975432 122222 2222222222 2345678999
Q ss_pred ccccCChHHHHHHHh-ccccCceEeecCCcccccceeEEEee---------------cc----Cc----------hhHHH
Q 000129 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYIGI---------------QV----KK----------PLQRF 716 (2114)
Q Consensus 667 SATlpn~~dva~~l~-~~~~~~~~~f~~~~rpv~l~~~~~~~---------------~~----~~----------~~~~~ 716 (2114)
-||+.+ ..-+|+. ..+...+.++..+|........-..+ .. .. .....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999963 3333442 33344444444443322111111000 00 00 00000
Q ss_pred HHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccC
Q 000129 717 QLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2114)
Q Consensus 717 ~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (2114)
..-....+..+.. ...++.+-||++|...++.+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 0000112333333 3347788899999988887777665431 1
Q ss_pred ceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEE--EEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.|..+++.-+.. .++. =++.+|++=|+++..|+++-...+ +.-+-.+. .. --+..+..||+||.-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~--~~----gpd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM--SY----GPDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCC--CC----CCcHHHHHHHHHHHHh
Confidence 234445543333 2221 356899999999999999864321 22211111 11 1256679999999966
Q ss_pred CCCCCceEEEEEcCCC
Q 000129 874 PQYDSYGEGIIITGHS 889 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (2114)
.. ..+.++.++..
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 53 45666666553
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-07 Score=110.13 Aligned_cols=355 Identities=19% Similarity=0.214 Sum_probs=181.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..+-|+|.+-+.-.++.+..+++.-.-|-|||+.| ++|...+.. .. -.|+++|- .+-..+.+.+.+-|....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra---Ew--plliVcPA-svrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA---EW--PLLIVCPA-SVRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh---cC--cEEEEecH-HHhHHHHHHHHHhccccc
Confidence 557889999999998887777999999999999998 677766665 33 57889995 333344444543333332
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
.+.|+.-..|...+ .-....|.|.+.+.+..+-...+ -...+++|+||.|+|.+..... .+.+..-+
T Consensus 269 pi~vv~~~~D~~~~--~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr-------~Ka~~dll 335 (689)
T KOG1000|consen 269 PIFVVDKSSDPLPD--VCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKR-------TKAATDLL 335 (689)
T ss_pred ceEEEecccCCccc--cccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhh-------hhhhhhHH
Confidence 33333222222222 11234788999888765544322 2247999999999997654322 23222222
Q ss_pred CCCceEEEEcccCCCh--hHHHHHhcCCCCcee----ecC---CCCCccCcEEEEecccccchHHH-----HHhcCHHHH
Q 000129 1499 ENKIRIVALSTSLANA--KDLGEWIGATSHGLF----NFP---PGVRPVPLEIHIQGVDITNFEAR-----MQAMTKPTF 1564 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~--~dla~wl~~~~~~~~----~f~---~~~rpv~l~~~~~~~~~~~~~~~-----~~~~~~~~~ 1564 (2114)
..-.++|+||.|++-. .++-..+....+.+| .|. .+.+.++.-..+.+.. +.... -..|.+...
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~t--nl~EL~~lL~k~lMIRRlK 413 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCT--NLEELAALLFKRLMIRRLK 413 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 3456899999998532 233222222221111 111 1122223222222211 11111 122444555
Q ss_pred HHHHHHhcCCCCEEEEe-CChHHHHHHHHHHHHhhccCCcc-----ccc----cc-CCCcccchhhHhhh----------
Q 000129 1565 TAIVQHAKNEKPALVFV-PSRKYVRLTAVDLMTYSSMDGDQ-----KSA----FL-LWPAEEVEPFIDNI---------- 1623 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv-~sr~~a~~la~~L~~~~~~~~~~-----~~~----~l-~~~~~~l~~~~~~i---------- 1623 (2114)
..++..+-+..+.+|++ +.+..++.- +|.......... +.. |. ......+..+.+.+
T Consensus 414 ~dvL~qLPpKrr~Vv~~~~gr~da~~~--~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 414 ADVLKQLPPKRREVVYVSGGRIDARMD--DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHhhCCccceEEEEEcCCccchHHH--HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 55555555555555554 444333221 111111100000 000 00 00111111111111
Q ss_pred -------------hHHHHHHHhcc--ceEeecCCCCHHHHHHHHHHHhcC-CceE-EEecCccccccCCCCcEEEEEeee
Q 000129 1624 -------------QEEMLKATLRH--GVGYLHEGLNKTDQEVVSALFEAG-KIKV-CVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1624 -------------~d~~L~~~l~~--gV~~~H~~ls~~dR~~v~~~F~~g-~i~V-LVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
-|..-...-.. |...+.|..+..+|....+.|... +++| +++-..+..|+++.+..+||-
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF--- 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF--- 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE---
Confidence 11112222233 345567999999999999999855 3443 333445688999998888873
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeec
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
...+.++.-++|-=-||-|-|...+--++.||..
T Consensus 569 -------aEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 569 -------AELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred -------EEecCCCceEEechhhhhhccccceeeEEEEEec
Confidence 2333444445565566666543333334444443
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=120.68 Aligned_cols=126 Identities=20% Similarity=0.129 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000129 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~ 1421 (2114)
++++|--.--.+ .+.-|....||.|||+++.+|+.-.... +. .|-+|+++..||.+-++.+...| +.+|++
T Consensus 77 ~ydvQlig~l~L---~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~pvy-~~LGLs 147 (870)
T CHL00122 77 HFDVQLIGGLVL---NDGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMGQIY-RFLGLT 147 (870)
T ss_pred CCchHhhhhHhh---cCCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHHHHH-HHcCCc
Confidence 555555443222 2336889999999999999988533332 33 67899999999999888776444 457999
Q ss_pred EEEEcCCcccch-hhccCCcEEEEChhhHH-HHHhh-hc---ccccccceeEEEecccccc
Q 000129 1422 VVELTGETAMDL-KLLEKGQIIISTPEKWD-ALSRR-WK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1422 v~~l~G~~~~~~-~~l~~~~IIV~TPe~l~-~l~r~-~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
|++..++.+... +..-.++|+++|..-+- ..+|. .. .......+.+.||||+|.+
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 999988776653 34446799999998652 23332 11 1113456889999999954
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=99.67 Aligned_cols=136 Identities=17% Similarity=0.218 Sum_probs=78.1
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
++-.+|-..+|+|||.-.+--+++.... .+. |+|+++|||.++.++.+.++ |..+..-+.-.. ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~--~~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARM--RTHF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHh-------cCCcccCceeee--cccc
Confidence 4456888999999998655544443333 244 99999999999999988665 222222222111 1223
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
.+.-|-|+|-..+...+.. ...+.++++||+||+|..... --.+...++.... ....++|.+|||+|-.
T Consensus 71 g~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~----sIA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPT----SIAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHH----HHHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred CCCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHH----HHhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 4456888888876655443 334689999999999975321 1123333444332 2357899999999743
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-06 Score=112.42 Aligned_cols=302 Identities=15% Similarity=0.174 Sum_probs=160.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
+...+|-||.|||||.+..-+ ++.... .+.. ++++|+.+++|+.+...+++.. ...|.....-.++...+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~w-Lk~~l~-~~~~--~VLvVShRrSL~~sL~~rf~~~--~l~gFv~Y~d~~~~~i~~--- 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRW-LKDALK-NPDK--SVLVVSHRRSLTKSLAERFKKA--GLSGFVNYLDSDDYIIDG--- 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHH-HHHhcc-CCCC--eEEEEEhHHHHHHHHHHHHhhc--CCCcceeeeccccccccc---
Confidence 455789999999999765333 333221 2344 9999999999999999988731 111222111111111110
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCch---HHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPV---LEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~---le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
...+-+++..+. +.|- ....+.++++|||||+-.+... ..++ .+.+...++.+. ....++|++-|++.
T Consensus 120 ~~~~rLivqIdS---L~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDS---LHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehh---hhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCC
Confidence 123445555444 3332 1235778999999999854331 1222 233444444443 45678999999996
Q ss_pred Chh-HHHHHhc-CCCCc-eeec--CC--CCCccCcEEEEecccccchH------------------------HHHHhcC-
Q 000129 1513 NAK-DLGEWIG-ATSHG-LFNF--PP--GVRPVPLEIHIQGVDITNFE------------------------ARMQAMT- 1560 (2114)
Q Consensus 1513 n~~-dla~wl~-~~~~~-~~~f--~~--~~rpv~l~~~~~~~~~~~~~------------------------~~~~~~~- 1560 (2114)
+.- ++-+-+. ..... ++|- .+ +.|...+ ...+...... .......
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~---~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTF---LRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEE---ecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 532 4433332 22111 1110 00 0011000 0000000000 0000011
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
..-+..+...+..++.+-||++|...++.++..... ....|..++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~-----------------------------------~~~~Vl~l~ 313 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCAR-----------------------------------FTKKVLVLN 313 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHh-----------------------------------cCCeEEEEc
Confidence 123455666778889999999988877666543311 234577777
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEE--EEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCc
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLV--VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~v--VI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
+.-+.. .+.+ =++.+|++=|+++..|+++....+ |. .|..+. ..-.+..+..||+||+-.. ..
T Consensus 314 s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f---~yvk~~---~~gpd~~s~~Q~lgRvR~l---~~ 378 (824)
T PF02399_consen 314 STDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMF---AYVKPM---SYGPDMVSVYQMLGRVRSL---LD 378 (824)
T ss_pred CCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEE---EEecCC---CCCCcHHHHHHHHHHHHhh---cc
Confidence 665544 2221 456899999999999999874321 11 011111 1112466799999999764 35
Q ss_pred eEEEEEeecC
Q 000129 1719 GKCVILCHAP 1728 (2114)
Q Consensus 1719 G~~iil~~~~ 1728 (2114)
.+.++.+...
T Consensus 379 ~ei~v~~d~~ 388 (824)
T PF02399_consen 379 NEIYVYIDAS 388 (824)
T ss_pred CeEEEEEecc
Confidence 5566655543
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=113.88 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|.-.-- +++.+ -|.-+.||=|||+++.+|+.-....++ -|-+|+..--||.-=++.+...+
T Consensus 169 ~~yDVQliGgi-vLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~Gk-----------gVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 169 VHYDVQLIGGV-VLHQG--KIAEMATGEGKTLVATLPVYLNALTGN-----------GVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cccchHHhhhh-hhcCC--ceeeecCCCCchhHHHHHHHHHHHcCC-----------CcEEEEechhhhhccHHHHHHHH
Confidence 34556654433 33433 478899999999999999877666542 25566777788888888888888
Q ss_pred ccCCcEEEEEeC-CCcc-ChhhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSG-DQTL-TRQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~G-d~~~-~~~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+.... +.+. .++..-.++|.++|.--+ |.|.-+. .+......+.+.||||||.+
T Consensus 235 ~fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 235 EFHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HHhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 889999998865 3232 233445899999998764 5443332 12234456789999999965
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=98.71 Aligned_cols=133 Identities=20% Similarity=0.334 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
++--+|-..+|||||.-.+--++++.... +.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-
Confidence 44467889999999986655555543332 248999999999999998877542 33332 21111
Q ss_pred ChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHH-HHHHhhccccccEEEEcc
Q 000129 591 TRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART-VRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl-~~~~~~~~~~~riv~lSA 668 (2114)
.....+.-|-|+|...+ ..+.. . ....++++||+||+|..- -.+|..+- ++... .....++|.+||
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~D------p~sIA~rg~l~~~~-~~g~~~~i~mTA 134 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTD------PTSIAARGYLRELA-ESGEAKVIFMTA 134 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--S------HHHHHHHHHHHHHH-HTTS-EEEEEES
T ss_pred -ccccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCC------HHHHhhheeHHHhh-hccCeeEEEEeC
Confidence 12234566788888876 33333 2 345789999999999742 11222221 11111 234578999999
Q ss_pred ccCC
Q 000129 669 TLPN 672 (2114)
Q Consensus 669 Tlpn 672 (2114)
|-|.
T Consensus 135 TPPG 138 (148)
T PF07652_consen 135 TPPG 138 (148)
T ss_dssp S-TT
T ss_pred CCCC
Confidence 9774
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.6e-07 Score=117.46 Aligned_cols=338 Identities=20% Similarity=0.249 Sum_probs=197.3
Q ss_pred CCccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCC
Q 000129 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550 (2114)
Q Consensus 474 ~~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~ 550 (2114)
+...+++.-|+|.. | .+|+.+|-+-++-++. .+.|+|+.-.-|-|||..-.- .|..+.....-.|
T Consensus 354 p~~~Kle~qp~~~~----g-~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~g------ 421 (1373)
T KOG0384|consen 354 PRFRKLEKQPEYKG----G-NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHG------ 421 (1373)
T ss_pred hhHHHhhcCccccc----c-chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccC------
Confidence 34555666666643 3 6899999998875543 467899999999999975432 2222222111111
Q ss_pred cEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh------------hccceEEEcCHhHHHHHHhccCCC
Q 000129 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDR 618 (2114)
Q Consensus 551 ~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~------------~~~~~IiV~TPek~d~l~r~~~~~ 618 (2114)
-.|+|+|.--+ .-+.++|..+. .+++..++|+.....-. .-..++++||.|. ++.- .
T Consensus 422 -pflvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~---~LkD---k 490 (1373)
T KOG0384|consen 422 -PFLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEI---VLKD---K 490 (1373)
T ss_pred -CeEEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHH---Hhcc---H
Confidence 25778887554 45666676654 57888899975432210 0147899999995 2221 1
Q ss_pred ccccc--ccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc-C-ChHHHHHHHhccccCceEe----
Q 000129 619 TYTQL--VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL-P-NYEDVALFLRVNLEKGLFY---- 690 (2114)
Q Consensus 619 ~~l~~--v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl-p-n~~dva~~l~~~~~~~~~~---- 690 (2114)
..++. ..+++|||||+|...-...++. +.. ...+- -+++|.|. . |.+++...+..-.+ +-|.
T Consensus 491 ~~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~~-------f~~~~-rllitgTPlQNsikEL~sLl~Fl~P-~kf~~~~~ 560 (1373)
T KOG0384|consen 491 AELSKIPWRYLLVDEAHRLKNDESKLYES-LNQ-------FKMNH-RLLITGTPLQNSLKELWSLLHFLMP-GKFDSWDE 560 (1373)
T ss_pred hhhccCCcceeeecHHhhcCchHHHHHHH-HHH-------hcccc-eeeecCCCccccHHHHHHHhcccCC-CCCCcHHH
Confidence 23333 3689999999997533333332 111 12223 36777772 1 35555544432111 0000
Q ss_pred ----ec-----------CCccc--------------ccceeEEEeeccCch------------------------hHHHH
Q 000129 691 ----FD-----------NSYRP--------------VPLSQQYIGIQVKKP------------------------LQRFQ 717 (2114)
Q Consensus 691 ----f~-----------~~~rp--------------v~l~~~~~~~~~~~~------------------------~~~~~ 717 (2114)
|+ ...+| .|-..+++.+....- ...++
T Consensus 561 f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLN 640 (1373)
T KOG0384|consen 561 FLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLN 640 (1373)
T ss_pred HHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHH
Confidence 00 00001 011112221111000 00011
Q ss_pred HhhH----------------------------HH-------------HHHHHHHh--CCCeEEEEecChHHHHHHHHHHH
Q 000129 718 LMND----------------------------LC-------------YEKVVAVA--GKHQVLIFVHSRKETAKTARAIR 754 (2114)
Q Consensus 718 ~~~~----------------------------~~-------------~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~ 754 (2114)
.|.+ .. .++++-.+ ++++||||..-.+--.-++.+|.
T Consensus 641 immELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~ 720 (1373)
T KOG0384|consen 641 IMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLS 720 (1373)
T ss_pred HHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHH
Confidence 1100 11 11222111 26789999877777777777776
Q ss_pred HHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC---CCceEEEechHhh
Q 000129 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLA 831 (2114)
Q Consensus 755 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~---g~i~VLVaT~tla 831 (2114)
.+++.. .-+-|++..+-|+..++.|.. .....|.||-+.+
T Consensus 721 ~r~ypf-------------------------------------QRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 721 LRGYPF-------------------------------------QRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred HcCCcc-------------------------------------eeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 655433 233799999999999999964 4577899999999
Q ss_pred hhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 832 ~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
-||||-+.+.||-++.-|||. .=+|-.-||-|-|..+.-.+|.+++.+..
T Consensus 764 LGINLatADTVIIFDSDWNPQ----------NDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQ----------NDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred ccccccccceEEEeCCCCCcc----------hHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 999998877766655555554 57899999999988788888988887653
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-06 Score=105.71 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHH--HHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVA--VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a--~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
+..|.++|++.+.-+++ .+.--|+.-.-|=|||... .|+.+++-.+. ...+|||+|. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccc----------cCceEEEccH-HHHHHHH
Confidence 35788999999886643 3334677889999999653 34444332111 1269999996 5778999
Q ss_pred HHHHHhhccCCcEEEEEeCCCcc----------------ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEec
Q 000129 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~----------------~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
.+|..++.+ ++|.+++|..+. .........|+++|.+.+. ..++...-...+++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecC
Confidence 999998764 578888875542 1112345679999998642 222222223458999999
Q ss_pred cccccc
Q 000129 632 IHLLHD 637 (2114)
Q Consensus 632 aH~l~d 637 (2114)
.|.+-.
T Consensus 346 GH~IrN 351 (923)
T KOG0387|consen 346 GHRIRN 351 (923)
T ss_pred cccccC
Confidence 999864
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-06 Score=111.00 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=72.8
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcC---CceEEEecCccccccCCCC-cEEEEEeeeEecCCcCcCCCCCHhHHHHhHc
Q 000129 1633 RHGVGYLHEGLNKTDQEVVSALFEAG---KIKVCVMSSSMCWGVPLTA-HLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1633 ~~gV~~~H~~ls~~dR~~v~~~F~~g---~i~VLVaT~~la~Gvdip~-~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2114)
++....+.|++..+-|+..+..|..- ..-.|+||...+-|||+-+ .+||| ++.+.++..=+|-..
T Consensus 723 ~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII-----------FDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 723 GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII-----------FDSDWNPQNDLQAQA 791 (1373)
T ss_pred CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE-----------eCCCCCcchHHHHHH
Confidence 44566788999999999999999854 5568999999999999985 55555 778888888899999
Q ss_pred ccCCCCCCCceEEEEEeecCc
Q 000129 1709 HASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~ 1729 (2114)
||-|-|....-.+|.|++...
T Consensus 792 RaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHhhcccceEEEEEEecCCc
Confidence 999998888889999998764
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=110.73 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=175.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-hhhc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLL 1436 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-~~~l 1436 (2114)
..-+|.=-||||||+......-..+.. .+.+++++|+-+++|-.|+.+.+. .|+....... ..+.... .+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~-~~~~~~~~~~---~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ-SFGKVAFNDP---KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH-HHHHhhhhcc---cccCHHHHHHHH
Confidence 468999999999998875544433333 334499999999999999999998 5665321111 1111111 2233
Q ss_pred c--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1437 E--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1437 ~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
+ .+.|||+|-++|............-.+=-+||+||||+-- .| ....+|+... ++...+|+|.|+--.
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G----~~~~~~~~~~----~~a~~~gFTGTPi~~ 416 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YG----ELAKLLKKAL----KKAIFIGFTGTPIFK 416 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--cc----HHHHHHHHHh----ccceEEEeeCCcccc
Confidence 3 3489999999997766542111112223478999999642 22 2344444442 348899999998433
Q ss_pred hHH---HHHhcCCCCceeecCCCCCc---cCcEEEEe-cccc-----c--ch--HHH--------------------HHh
Q 000129 1515 KDL---GEWIGATSHGLFNFPPGVRP---VPLEIHIQ-GVDI-----T--NF--EAR--------------------MQA 1558 (2114)
Q Consensus 1515 ~dl---a~wl~~~~~~~~~f~~~~rp---v~l~~~~~-~~~~-----~--~~--~~~--------------------~~~ 1558 (2114)
++- ..-+|... ..|...+..+- +|+..... .... . .. ... ...
T Consensus 417 ~d~~tt~~~fg~yl-h~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 495 (962)
T COG0610 417 EDKDTTKDVFGDYL-HTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLA 495 (962)
T ss_pred ccccchhhhhccee-EEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHh
Confidence 221 12222211 12222222221 11111111 0000 0 00 000 000
Q ss_pred cC----HHHHHHHHHHh----cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH
Q 000129 1559 MT----KPTFTAIVQHA----KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA 1630 (2114)
Q Consensus 1559 ~~----~~~~~~i~~~l----~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~ 1630 (2114)
+. ......+..+. ..+.++.+-+++++-|................ .+..+..+... ..
T Consensus 496 ~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~-----~~ 561 (962)
T COG0610 496 MLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHS---------KESLEGAIKDY-----NT 561 (962)
T ss_pred cchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhh---------hhhhhhHHHHH-----Hh
Confidence 00 01111112221 23445677777777554444433222110000 00000000000 00
Q ss_pred Hhcc--ceEeecCCCCHHHHHHHHHH--HhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHh
Q 000129 1631 TLRH--GVGYLHEGLNKTDQEVVSAL--FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2114)
Q Consensus 1631 ~l~~--gV~~~H~~ls~~dR~~v~~~--F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2114)
.... +....|..... .+...... ......++||.++++-+|.|.|....+. .+-|+---.++|-
T Consensus 562 ~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-----------vDK~Lk~H~L~QA 629 (962)
T COG0610 562 EFETDFDKKQSHAKLKD-EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-----------VDKPLKYHNLIQA 629 (962)
T ss_pred hcccchhhhhhhHHHHH-HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-----------eccccccchHHHH
Confidence 0000 11111333322 33333444 4567899999999999999999887765 2344455678999
Q ss_pred HcccCCCCCC--CceEEEEEeecCcHHHHHHHHHhccCCCC
Q 000129 1707 MGHASRPLLD--NSGKCVILCHAPRKEYYKKFLRLTQNPNY 1745 (2114)
Q Consensus 1707 ~GRAGR~~~~--~~G~~iil~~~~~~~~~~~~lRl~~nP~~ 1745 (2114)
+-|+.|+-.+ ..|.++-++ .-.+.+++.+++..+...
T Consensus 630 isRtNR~~~~~K~~G~IVDf~--gl~e~l~~Al~~Y~~~~~ 668 (962)
T COG0610 630 ISRTNRVFPGKKKFGLIVDFR--GLKEALKKALKLYSNEGE 668 (962)
T ss_pred HHHhccCCCCCCCCcEEEECc--chHHHHHHHHHHhhcccc
Confidence 9999998544 234444444 477788888888777664
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=107.69 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=89.9
Q ss_pred HHHHHHHHHH------------cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-CceEEEEEcccHHHHHHHHHHHH
Q 000129 1345 IQTQVFTVLY------------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1345 iQ~q~~~~il------------~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+|.+++.-++ ......|++-.+|+|||+.+...+. .+....+. +.-++|||+|. .+..++..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666543 2345799999999999988855444 44332221 11159999999 88899999998
Q ss_pred HHhcCCCCcEEEEEcCCcc---cchhhccCCcEEEEChhhHHHHHhhhcc-cccccceeEEEecccccccCCCCchHHHH
Q 000129 1412 IKFGQGLGMRVVELTGETA---MDLKLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~---~~~~~l~~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
+.+.. ...++..+.|... .........+++|+|.+.+...-..+.. ...--+.++||+||+|.+.+..+..+..+
T Consensus 79 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 79 KWFDP-DSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp HHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccc-ccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 54432 2468888888761 1123455679999999987611111000 00112489999999999965443222221
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
. .+. ....+++|||+-.
T Consensus 158 ~--------~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 158 R--------KLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp H--------CCC-ECEEEEE-SS-SS
T ss_pred c--------ccc-cceEEeecccccc
Confidence 1 123 5677889999754
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-06 Score=111.60 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHH--HcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSA--LSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~--l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
.|+.+|.+-+.-+ +++-+ +-|+|-.-|=|||+..+-.+.......+ .+......+-.++|+|. .|+--+..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 6788999887643 33322 5799999999999987654444333321 12222233448899996 78999999999
Q ss_pred HhhccCCcEEEEEeCCCccC---hhhhccceEEEcCHhHH----HHHHhccCCCcccccccEEEEecccccccCCchhHH
Q 000129 572 NRLQMYDVKVRELSGDQTLT---RQQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~---~~~~~~~~IiV~TPek~----d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (2114)
+++.. ++|..++|..... +.+.++++|||+..+.+ +.+.. ....++|+||-|.+...+
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~--------~~wNYcVLDEGHVikN~k----- 1116 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK--------IDWNYCVLDEGHVIKNSK----- 1116 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh--------cccceEEecCcceecchH-----
Confidence 98765 6788888864432 23456789999999865 22222 124799999999886433
Q ss_pred HHHHHHHHHHhhccccccEEEEccc
Q 000129 645 SIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
+++.+.+.+...+.| +.||.|
T Consensus 1117 ---tkl~kavkqL~a~hR-LILSGT 1137 (1549)
T KOG0392|consen 1117 ---TKLTKAVKQLRANHR-LILSGT 1137 (1549)
T ss_pred ---HHHHHHHHHHhhcce-EEeeCC
Confidence 122222233333444 667888
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-07 Score=109.23 Aligned_cols=167 Identities=22% Similarity=0.238 Sum_probs=95.7
Q ss_pred HHHHHHHHHHc------------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
+|.+++.-++. ....+|++-.+|+|||..++..+. .+...... ....++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~-----~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ-----RGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT-----SS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc-----ccccceeEeecc-chhhhh
Confidence 46666665432 335699999999999988876655 33332111 011259999999 888999
Q ss_pred HHHHHHhhccCCcEEEEEeCCC---ccChhhhccceEEEcCHhHHHHHHhc-cCCCcccccccEEEEecccccccCCchh
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQ---TLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~---~~~~~~~~~~~IiV~TPek~d~l~r~-~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
..++.+.+.+..+++..+.|+. ..........+++|+|.+.+...... .......-..++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 9999998865567888888876 11122345789999999975411011 1110111237899999999986543333
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccC-C-hHHHHHHHh
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDVALFLR 681 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlp-n-~~dva~~l~ 681 (2114)
...+ .... ....++||||.- | ..++...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3222 1222 556788999932 2 455554443
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-05 Score=100.68 Aligned_cols=357 Identities=17% Similarity=0.206 Sum_probs=200.9
Q ss_pred CCHHHHHHHHH---HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1342 FNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1342 ~~~iQ~q~~~~---il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+-++|.--++- +|+.+=|.|++-.-|=|||..+ ++.+..|.+....| .-|||||.-.| ..+.++|. +|..
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTl-eNWlrEf~-kwCP-- 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTL-ENWLREFA-KWCP-- 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhH-HHHHHHHH-HhCC--
Confidence 66677655553 4666778899999999999665 45555555543444 56899998655 34455555 4554
Q ss_pred CcEEEEEcCCcccchh---hc----cCCcEEEEChhhHHHHHhhhccccc--ccceeEEEecccccccCCCCchHHHHHH
Q 000129 1419 GMRVVELTGETAMDLK---LL----EKGQIIISTPEKWDALSRRWKQRKY--VQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~---~l----~~~~IIV~TPe~l~~l~r~~~~~~~--l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
.++|-..+|......+ .+ ...+|+|+|...... .-..+.. -++++++|+||.|.|-+.....|
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~---~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy----- 544 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS---SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY----- 544 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC---ChHHHHHHHhccccEEEecchhhhhccchHHH-----
Confidence 5789899997644311 11 244999999875421 0001112 24578999999999975432222
Q ss_pred HHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCCCCCccCcEEEEeccc-------c----cchHHHHH
Q 000129 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD-------I----TNFEARMQ 1557 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~-------~----~~~~~~~~ 1557 (2114)
+.+.+ .+.+.|+++...++.| ..++...|.--...+|..... .+.+.+.... . .....+..
T Consensus 545 --~~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~----dl~~if~~k~~~d~d~e~~~l~qerIsrAK 617 (941)
T KOG0389|consen 545 --KHLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSME----DLDVIFKAKKTSDGDIENALLSQERISRAK 617 (941)
T ss_pred --HHhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccch----HHHHHHhccCCccchhhHHHHHHHHHHHHH
Confidence 22221 2456665555555544 344444332222222221100 0000000000 0 01122233
Q ss_pred hcCHH-----HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhc----c-CCc--ccc-------------------
Q 000129 1558 AMTKP-----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSS----M-DGD--QKS------------------- 1606 (2114)
Q Consensus 1558 ~~~~~-----~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~----~-~~~--~~~------------------- 1606 (2114)
.|.+| ....++..+-+..+.|.||.=.+.-..++..+..... . ..+ ...
T Consensus 618 ~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~ 697 (941)
T KOG0389|consen 618 TIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRS 697 (941)
T ss_pred HhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHH
Confidence 33333 2334445555566678888765555555554443321 0 000 000
Q ss_pred ------------------cccCCCc-----------------------------------------ccchhhHhhhhH--
Q 000129 1607 ------------------AFLLWPA-----------------------------------------EEVEPFIDNIQE-- 1625 (2114)
Q Consensus 1607 ------------------~~l~~~~-----------------------------------------~~l~~~~~~i~d-- 1625 (2114)
.|..+.. ..+..++..++.
T Consensus 698 ~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 698 IYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred hccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 0000000 000111111110
Q ss_pred ----------------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC-c-eEEEecCccccccCCCCcEEEEEeeeE
Q 000129 1626 ----------------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK-I-KVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2114)
Q Consensus 1626 ----------------~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~-i-~VLVaT~~la~Gvdip~~~vVI~gt~~ 1687 (2114)
+.....++++-..+.|...-.+|+.++..|...+ | -.|++|...+-|||+.+.++||
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI----- 852 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI----- 852 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE-----
Confidence 1223344556677789999999999999998654 3 4688999999999999888888
Q ss_pred ecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.+++++++-+=.|---||-|.|..++-.++.++.....
T Consensus 853 -----ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 853 -----IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred -----EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 56777777777888888888887788888988887654
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=103.35 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
|+ ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 59999995544 345567899999999999999999998776543210 0234899999999998888777
Q ss_pred HHHh
Q 000129 570 LSNR 573 (2114)
Q Consensus 570 ~~~~ 573 (2114)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=103.35 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
|+ ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 59999995544 345567899999999999999999998776543210 0234899999999998888777
Q ss_pred HHHh
Q 000129 570 LSNR 573 (2114)
Q Consensus 570 ~~~~ 573 (2114)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=102.49 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=77.9
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCC-Cc-eEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDG-HV-QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g-~i-~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
+++.-+.|...-.+|+.+++.|-.. .| -.|.+|-+.+-|||+-+.++||-++.-|+|-. =.|---||-
T Consensus 802 ~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d----------D~QAEDRcH 871 (941)
T KOG0389|consen 802 YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD----------DKQAEDRCH 871 (941)
T ss_pred ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc----------cchhHHHHH
Confidence 3444567999999999999999743 34 45789999999999999999998787777753 456666777
Q ss_pred CCCCCCceEEEEEcCCCcHH-HHHHhhcCCCcccchhh
Q 000129 873 RPQYDSYGEGIIITGHSELR-YYLSLMNQQLPIESQFV 909 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~-~~~~ll~~~~pies~l~ 909 (2114)
|.|..++-.++.+.+.+..+ .+..+.+..+.+|+.+.
T Consensus 872 RvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 872 RVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred hhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 76666778888888887654 44555666666666554
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-06 Score=99.75 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=136.0
Q ss_pred cccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHHHhcccC
Q 000129 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2114)
Q Consensus 1008 i~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2114)
+.+-||..|-..+....+..++|++||.|.||..+.- ..|..-.--|||.||+|-+-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~p-----------------------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMNP-----------------------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhCC-----------------------CCCchhHHHHHHHHHhHhhc
Confidence 5667899999888888899999999999999865521 12223345599999999887
Q ss_pred CCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCC-CCccccCCCCCHHHHHHHHhCCC-ch
Q 000129 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2114)
Q Consensus 1088 ~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~-~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2114)
..|. ...|..+..-++.||.+|+...+.+..+..++++-|+|.|.+--+ ..|+.|+|+...+-++++--+.| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 6666 466888899999999999999999999999999999999999776 68999999999988877765555 45
Q ss_pred hhhccCChHHhhhhhcCc-h-hHHHHHHHHhcCCceeE
Q 000129 1166 ERYYDLSPQELGELIRFP-K-MGRTLHKFVHQFPKLIL 1201 (2114)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~P~~~~ 1201 (2114)
..+..|...+.++.+++- . ..+.+.+.++.+|++.+
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 678888999999998743 2 23678888999999876
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=102.29 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
|. ++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 54 5999999665543 4567899999999999999999998776652221 123899999999999988777764
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=102.29 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~-~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
|. ++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 54 5999999665543 4567899999999999999999998776652221 123899999999999988777764
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-05 Score=103.46 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=81.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
..-+|.=-||||||+.....+-..+.. ...+++++|+-++.|-.|..+.|+.+..... .+. -..+...-
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~~~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-NDP-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhh-hcc-cccCHHHH
Confidence 358999999999999865544333322 1356999999999999999999988643221 111 11111111
Q ss_pred hhhhc--cceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 592 RQQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 592 ~~~~~--~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
++.+. ...|||||-.|+............-.+=-+||+||||+-.. |..- .++ ...-++...+|+|.|
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~----~~~----~~~~~~a~~~gFTGT 412 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELA----KLL----KKALKKAIFIGFTGT 412 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHH----HHH----HHHhccceEEEeeCC
Confidence 12222 35899999999854443321111111223789999997432 2211 111 112345788999999
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.1e-05 Score=100.42 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC-Cccc-chhhcc
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG-ETAM-DLKLLE 1437 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G-~~~~-~~~~l~ 1437 (2114)
-|.-..||-|||+++.+|+.-.... +. .+-+|+..--||..=+..+. .+-..+|++|++... +.+. ..+..-
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDaewmg-ply~fLGLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSEWMG-PLYEFHGLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHHHHH-HHHHHhCCceeecCCCCCCHHHHHHhC
Confidence 4788999999999999998755554 32 24455666667765444333 333457999998865 3333 344555
Q ss_pred CCcEEEEChhhHH-HHHhh-hc---ccccccceeEEEecccccc
Q 000129 1438 KGQIIISTPEKWD-ALSRR-WK---QRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~-~l~r~-~~---~~~~l~~v~liIiDEaH~l 1476 (2114)
.+||.++|..-|- ..+|. .. .....+.+.+.||||+|.+
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 7799999988751 12221 11 1223445889999999954
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00081 Score=84.49 Aligned_cols=302 Identities=15% Similarity=0.188 Sum_probs=178.1
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhcc-------------CCcE-------E-------------EEEeCCCc------
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------V-------------RELSGDQT------ 589 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~-------------~gi~-------v-------------~~l~Gd~~------ 589 (2114)
..+|||+|+|+|..|-++++.+.+++.. +|+. . ..+.|..+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4679999999999999999988876643 1200 0 00111110
Q ss_pred --cChh------hhccceEEEcCHhHHHHHHh----ccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH---
Q 000129 590 --LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI--- 654 (2114)
Q Consensus 590 --~~~~------~~~~~~IiV~TPek~d~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~--- 654 (2114)
+++. ....+|||||+|=-+..+.. +..+..+++.+.++|||.+|.+.-..-..+..++..+-..-
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0000 12368999999987754444 34566789999999999999875433334444444331100
Q ss_pred --------------hhccccccEEEEccccCChHHHHHHHhc--cccCceEeecCCc--------ccccceeEEEeeccC
Q 000129 655 --------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQVK 710 (2114)
Q Consensus 655 --------------~~~~~~~riv~lSATlpn~~dva~~l~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~~ 710 (2114)
.....-.|.|++|+... + ++...++. ....|...+...+ -.+++.|.+..+...
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~-p-e~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT-P-EINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCC-H-HHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 00122458999999853 3 33333322 1112222221111 234666777766654
Q ss_pred ch----hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCc
Q 000129 711 KP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (2114)
Q Consensus 711 ~~----~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 786 (2114)
.. ..+++...+.++..+......+.+|||++|--+=..+-..|+....
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~---------------------------- 325 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENI---------------------------- 325 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCC----------------------------
Confidence 43 3344444444444444333367899999998888777777764322
Q ss_pred chhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHh--hhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL--AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 787 ~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl--a~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
.++..|--.+..+-...-..|.+|+.+||+-|-=+ =+-..+.++..||- |.+|.. +.=..++
T Consensus 326 ---------sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~El 389 (442)
T PF06862_consen 326 ---------SFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSEL 389 (442)
T ss_pred ---------eEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHHH
Confidence 24445677778888888899999999999999643 34566777888886 555541 1124455
Q ss_pred HHhhcccCC-CCCCCceEEEEEcCCCcHHHHHH
Q 000129 865 MQMLGRAGR-PQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 865 ~Qr~GRAGR-~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+.+++.... .+....+.|.++++.-+.-.+..
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 566555433 11223567778877655444443
|
; GO: 0005634 nucleus |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=88.59 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|-|+|.+-+.-+....+ --|+.-.-|.|||..+.-.++..... ...++++|+.|| .|+..++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~r------------a~tLVvaP~VAl-mQW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDR------------APTLVVAPTVAL-MQWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcccc------------CCeeEEccHHHH-HHHHHHH
Confidence 345667666544322211 14677899999999876655553322 258999999997 5677777
Q ss_pred HHhhccCCcEEEEEeCCCccC-hhhhccceEEEcCHhHHHHHHhcc-----------CCCccccccc--EEEEecccccc
Q 000129 571 SNRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDIITRKS-----------GDRTYTQLVK--LLIIDEIHLLH 636 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~-~~~~~~~~IiV~TPek~d~l~r~~-----------~~~~~l~~v~--liIiDEaH~l~ 636 (2114)
.+... -..+|-.++|..... -+.+.+++++.||...+....|+. ...+.+..++ -||+||||-+.
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 66544 357888999865433 356779999999998887777662 1223444444 59999999987
Q ss_pred cCC
Q 000129 637 DNR 639 (2114)
Q Consensus 637 d~r 639 (2114)
+.+
T Consensus 330 ~R~ 332 (791)
T KOG1002|consen 330 DRQ 332 (791)
T ss_pred ccc
Confidence 643
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00026 Score=93.98 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=72.1
Q ss_pred hHhhhhHHHHHHHhccceE--eecCCCCHHHHHHHHHHHhcC-CceEEE-ecCccccccCCCCcEEEEEeeeEecCCcCc
Q 000129 1619 FIDNIQEEMLKATLRHGVG--YLHEGLNKTDQEVVSALFEAG-KIKVCV-MSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2114)
Q Consensus 1619 ~~~~i~d~~L~~~l~~gV~--~~H~~ls~~dR~~v~~~F~~g-~i~VLV-aT~~la~Gvdip~~~vVI~gt~~yd~~~~~ 1694 (2114)
.++-+.+..++..+ ..|. .+.|..++.+|..+.++|.++ .|+||+ +|.+.+-|+|+.+...|| -+
T Consensus 1352 mlDlVekDL~k~~m-psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV----------Fv 1420 (1549)
T KOG0392|consen 1352 MLDLVEKDLFKKYM-PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV----------FV 1420 (1549)
T ss_pred HHHHHHHHHhhhhc-CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE----------EE
Confidence 34444444444433 3455 678999999999999999999 888765 578999999999766666 12
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
.=+.++..=+|-+-||-|-|..+.-.+|.+.....
T Consensus 1421 EHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1421 EHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred ecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 23444455599999999987667777777776654
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.8e-05 Score=89.99 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|++.|.-+.-.+..+ -|+...||=|||+++.++..-....+ ..|=+++...-||..=++.+..++
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~G-----------~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQG-----------KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTTS-----------S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHhc-----------CCcEEEeccHHHhhccHHHHHHHH
Confidence 6788998888655333 38999999999999988776655443 268888999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCh-hhhccceEEEcCHhHH--HHHHhccCC---CcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPek~--d~l~r~~~~---~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+..+++.+... +..-.++|+++|...+ |.+..+... ........++||||||.+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 999999999999876443 3345789999999986 555544321 123467899999999965
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00023 Score=87.16 Aligned_cols=348 Identities=18% Similarity=0.208 Sum_probs=193.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCC---ch--HHHHHHHHHHHHHhccCC----------C--C--------CCCC
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGA---GK--TNVAVLTILQQLALNRND----------D--G--------SFNH 548 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGs---GK--T~~a~l~il~~l~~~~~~----------~--g--------~~~~ 548 (2114)
..+++.|.+.+..+++=.+ ++ .||++ |+ +-+|.+-+++++.+.+.. . | .-..
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 3689999999987766555 44 45554 44 567778888877653310 0 1 0112
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhccCCc----------EEEEEeCCCcc----------------------------
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV----------KVRELSGDQTL---------------------------- 590 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~~gi----------~v~~l~Gd~~~---------------------------- 590 (2114)
..+|||+++|+|+-|-.++..+..++....- --+++.|+...
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 4679999999999999999999887542110 01233332110
Q ss_pred -Chh------hhccceEEEcCHhHHHHHHh----ccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHh----
Q 000129 591 -TRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE---- 655 (2114)
Q Consensus 591 -~~~------~~~~~~IiV~TPek~d~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~---- 655 (2114)
++. ....++|+||+|=-+.++.. +..+..+++.+.++|||-+|.+.-..-..+..|+..+-.+=.
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 010 12468999999988876665 334577899999999999998875443444445544421100
Q ss_pred -------------hccccccEEEEccccCChHHHHHHHhccc--cCceEee-----cCCcc--cccceeEEEeeccCch-
Q 000129 656 -------------TTKEHIRLVGLSATLPNYEDVALFLRVNL--EKGLFYF-----DNSYR--PVPLSQQYIGIQVKKP- 712 (2114)
Q Consensus 656 -------------~~~~~~riv~lSATlpn~~dva~~l~~~~--~~~~~~f-----~~~~r--pv~l~~~~~~~~~~~~- 712 (2114)
+...-.|.+++|+-. + .++..++.... -.|...+ .++.+ -+|+.|.+..+.....
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 000122455555542 1 23333332110 0111111 11222 2344444433333222
Q ss_pred ---hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 713 ---LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 713 ---~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
..++......+.-.+... ...-+||+++|--.-.++-.++++....-..+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~-t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i-------------------------- 582 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKR-TESGILIYIPSYFDFVRVRNYMKKEEISFVMI-------------------------- 582 (698)
T ss_pred cCchHHHHHHHHhhchhhccc-ccCceEEEecchhhHHHHHHHhhhhhcchHHH--------------------------
Confidence 223322222111111111 13468999999888888777777654221111
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechH--hhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHh
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT--LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~t--la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2114)
|---+...-...-+.|-.|...||+-|-- .-+--++.++.-||.+..|-+|. =..+++.|
T Consensus 583 -----------~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~-------FYsEiinm 644 (698)
T KOG2340|consen 583 -----------NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPH-------FYSEIINM 644 (698)
T ss_pred -----------hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcH-------HHHHHHhh
Confidence 11112222334557899999999999964 34567888998888844444433 35789999
Q ss_pred hcccCCCC--CCCceEEEEEcCCCcH
Q 000129 868 LGRAGRPQ--YDSYGEGIIITGHSEL 891 (2114)
Q Consensus 868 ~GRAGR~g--~d~~G~~iil~~~~e~ 891 (2114)
.||+.--| ......|.++++.-+.
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhhhccCCccccceEEEEEeechhh
Confidence 99875433 3345667777776443
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00045 Score=87.21 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+-|.|..++.-+.-. ..--|+...-|-|||+...-.|+..-.......+..+... +.+||+|. +|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 6778999998755422 1236777888999999766556554333222223233333 69999996 6789999999
Q ss_pred HHhhccCCcEEEEEeCCC--ccChhhhccceEEEcCHhHHHHHHh-------ccCCCcccccc--cEEEEecccccccCC
Q 000129 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITR-------KSGDRTYTQLV--KLLIIDEIHLLHDNR 639 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~--~~~~~~~~~~~IiV~TPek~d~l~r-------~~~~~~~l~~v--~liIiDEaH~l~d~r 639 (2114)
.+++..--++|..++|.. ......+..++|+|||..- +.+ ..+....+..| .-||+||||.+.+..
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~l---va~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~ 479 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNL---VANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN 479 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeec---cccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc
Confidence 999988889999999986 3344567899999999863 222 22223334344 469999999986533
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
. .-...+.++ ....| -++|+|
T Consensus 480 t-q~S~AVC~L-------~a~~R-WclTGT 500 (901)
T KOG4439|consen 480 T-QCSKAVCKL-------SAKSR-WCLTGT 500 (901)
T ss_pred h-hHHHHHHHH-------hhcce-eecccC
Confidence 2 222223333 23334 677888
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0018 Score=82.12 Aligned_cols=137 Identities=21% Similarity=0.247 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHc----CCCcEEEEecCCCchHHHHHHHHHHH-hhhc-----cCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRN-HQKA-----SETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~----~~~nvli~ApTGSGKTl~~~l~il~~-l~~~-----~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
.+-|.|..++.-+.- ...--|+...-|-|||+...-.|+.. .... .+... +.|||+|- .|+.|++.++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 678999999887652 22347888999999998654333322 1111 11112 58999995 6889999999
Q ss_pred HHHhcCCCCcEEEEEcCCcc--cchhhccCCcEEEEChhhHHH----HHhhhcccccccce--eEEEecccccccCCC
Q 000129 1411 EIKFGQGLGMRVVELTGETA--MDLKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQV--SLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~--~~~~~l~~~~IIV~TPe~l~~----l~r~~~~~~~l~~v--~liIiDEaH~l~~~~ 1480 (2114)
.+++... -++|..++|... ...+.+.+.||||+|..-... -+........+.+| .-||+||||.+-+..
T Consensus 403 ~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~ 479 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN 479 (901)
T ss_pred HHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc
Confidence 9888875 689999999864 346788899999999876543 22222223344444 569999999987543
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0048 Score=77.76 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=140.6
Q ss_pred cCCcEEEEChhhHHHHHhh----hcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh----------------
Q 000129 1437 EKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS---------------- 1496 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~----~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~---------------- 1496 (2114)
-++|||||+|=-|-.++.. -.....+++|.++|+|.||.+.-..-..+..++..+...-.
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 4679999999876655542 12234799999999999997653322222333333221110
Q ss_pred -hcCCCceEEEEcccCCChhHHHHHhcC---CCCceeecCCCCC--------ccCcEEEEecccccch----HHHHHhcC
Q 000129 1497 -QVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNFPPGVR--------PVPLEIHIQGVDITNF----EARMQAMT 1560 (2114)
Q Consensus 1497 -~~~~~~riV~lSATl~n~~dla~wl~~---~~~~~~~f~~~~r--------pv~l~~~~~~~~~~~~----~~~~~~~~ 1560 (2114)
+...-.|.|++|+... ++ +...+.. +..+...+.+... .+++...+..++.... ..++....
T Consensus 210 g~a~~~RQtii~S~~~~-pe-~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~ 287 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQT-PE-INSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFT 287 (442)
T ss_pred CcchheeEeEEecCCCC-HH-HHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHH
Confidence 1111368999998763 22 2222222 1111111111111 2233334444433332 23333334
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1561 ~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
+..+..+.. -...+.+|||+||--+=..+-..|. .-....+.+|
T Consensus 288 ~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-----------------------------------~~~~sF~~i~ 331 (442)
T PF06862_consen 288 KKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-----------------------------------KENISFVQIS 331 (442)
T ss_pred HHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-----------------------------------hcCCeEEEec
Confidence 444444432 1456789999999755444433331 1122356778
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCcc--ccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHH---HHhHcccCC-CC
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSM--CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL---LQMMGHASR-PL 1714 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~l--a~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~---lQr~GRAGR-~~ 1714 (2114)
.-.+..+-...-..|.+|+.+||+.|.=+ =+-..+.++..|| -|..|..+.=| +.|++.... .+
T Consensus 332 EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi----------FY~~P~~p~fY~El~n~~~~~~~~~~ 401 (442)
T PF06862_consen 332 EYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI----------FYGPPENPQFYSELLNMLDESSGGEV 401 (442)
T ss_pred ccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE----------EECCCCChhHHHHHHhhhcccccccc
Confidence 88999999999999999999999999532 2334566777777 35555555444 444443332 11
Q ss_pred CCCceEEEEEeecCcHHHHHHHH
Q 000129 1715 LDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
....+.|.++++.-+.-.+++++
T Consensus 402 ~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 402 DAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred cccCceEEEEecHhHHHHHHHHh
Confidence 13467888888877766666555
|
; GO: 0005634 nucleus |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.3e-05 Score=87.40 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhh-----hccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ-----KASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~-----~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
++|+-|.+|+..++....-.+|.||.|+|||.+..-.+...+. ....++ ++++++|+...++++..++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 4799999999999875545899999999999665444443321 122344 999999999999999999885
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00058 Score=90.40 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=82.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh-
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~- 592 (2114)
-+.-.-||=|||+++.+|+.-....+. .+-++...-=||.--......++..+|++|+....+++...
T Consensus 96 ~iaEM~TGEGKTL~atlp~ylnaL~gk-----------gVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek 164 (822)
T COG0653 96 DIAEMRTGEGKTLVATLPAYLNALAGK-----------GVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEK 164 (822)
T ss_pred ceeeeecCCchHHHHHHHHHHHhcCCC-----------CcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHH
Confidence 578899999999999998765444331 46777788888888888889999999999999888876553
Q ss_pred hhhccceEEEcCHhHH--HHHHhcc---CCCcccccccEEEEeccccc
Q 000129 593 QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (2114)
+..-.++|..+|--.+ |.+.-.. .+..+.....+-|+||++.+
T Consensus 165 ~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 165 RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3455899999998764 4332221 12244556788999999865
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=97.89 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=85.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH-----HHhcCC-CC--cEEEEEcCCc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE-----IKFGQG-LG--MRVVELTGET 1429 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~-----~~f~~~-~g--~~v~~l~G~~ 1429 (2114)
-|+.+..+||+|||.+|+-.|+..... .+..+.|++||+.++-..+.+-+. ..|... .| +....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 479999999999999998888877666 233389999999999887775543 334332 12 3333443322
Q ss_pred ---------ccchhhcc--------CCcEEEEChhhHHHH-H-hhh------ccc-cc---ccce-eEEEecccccccCC
Q 000129 1430 ---------AMDLKLLE--------KGQIIISTPEKWDAL-S-RRW------KQR-KY---VQQV-SLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1430 ---------~~~~~~l~--------~~~IIV~TPe~l~~l-~-r~~------~~~-~~---l~~v-~liIiDEaH~l~~~ 1479 (2114)
....+.+. .-+|.|+|.+.+..- . +.. ... .. ++.. -.||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 11111111 237999999987542 1 111 011 11 2222 37899999999542
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
+..++.+ ..+ ++.-++.+|||.++
T Consensus 217 -~k~~~~i----~~l-----npl~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI----EAL-----KPQMIIRFGATFPD 240 (986)
T ss_pred -hHHHHHH----Hhc-----CcccEEEEeeecCC
Confidence 2233222 222 24446779999976
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=95.57 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=83.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH-----Hhhcc-C-C--cEEE
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS-----NRLQM-Y-D--VKVR 582 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~-----~~~~~-~-g--i~v~ 582 (2114)
-|+.+.++||+|||.+|+-+|+....... -.+.|+++|+.|+-.-+...+. ..|.. + | +...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~---------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG---------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 37999999999999999999988766542 3489999999998776665443 22321 1 2 3344
Q ss_pred EEeCCC-------ccChh----------hhccceEEEcCHhHHHH--HHhccCC------C-ccc---ccc-cEEEEecc
Q 000129 583 ELSGDQ-------TLTRQ----------QIEETQIIVTTPEKWDI--ITRKSGD------R-TYT---QLV-KLLIIDEI 632 (2114)
Q Consensus 583 ~l~Gd~-------~~~~~----------~~~~~~IiV~TPek~d~--l~r~~~~------~-~~l---~~v-~liIiDEa 632 (2114)
.+.+.. .+... .....+|+|+|-+.+.. ..+...+ . ..+ ... -.||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444322 11111 01146899999998732 2121101 0 111 112 27899999
Q ss_pred cccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 633 H~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
|++... +..++.| ....+. -++.+|||.++
T Consensus 211 h~~~~~-~k~~~~i--------~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRD-NKFYQAI--------EALKPQ-MIIRFGATFPD 240 (986)
T ss_pred CCCCcc-hHHHHHH--------HhcCcc-cEEEEeeecCC
Confidence 998532 2234333 222332 35669999986
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00017 Score=82.15 Aligned_cols=148 Identities=24% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH---HHHHHHhc
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFG 1415 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~---~~~~~~f~ 1415 (2114)
++-.|+-|..++.++++ .+.+++.||.|||||+++..+.++.+.. ..-. +++|+-|..+...++- ....+++.
T Consensus 2 I~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ----SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT----SS---------
T ss_pred ccCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCccccccCCCCHHHHHH
Confidence 34578999999999994 6679999999999999999999988877 3444 8899988765421110 00001111
Q ss_pred CCCCc---EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1416 QGLGM---RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1416 ~~~g~---~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
....- ....+.+. ..-...+.++.|-+.++.- +|- + .+.+ .+||+|||+.+. ...++
T Consensus 78 p~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~----iRG---r-t~~~-~~iIvDEaQN~t----------~~~~k 137 (205)
T PF02562_consen 78 PYLRPIYDALEELFGK-EKLEELIQNGKIEIEPLAF----IRG---R-TFDN-AFIIVDEAQNLT----------PEELK 137 (205)
T ss_dssp TTTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGG----GTT------B-S-EEEEE-SGGG------------HHHHH
T ss_pred HHHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhh----hcC---c-cccc-eEEEEecccCCC----------HHHHH
Confidence 00000 00000011 1112234456677776543 222 2 2333 899999999773 45566
Q ss_pred HHHhhcCCCceEEEEccc
Q 000129 1493 YIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSAT 1510 (2114)
.+.++.+.+.++|++.-+
T Consensus 138 ~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHTTB-TT-EEEEEE--
T ss_pred HHHcccCCCcEEEEecCc
Confidence 667777888888887543
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0004 Score=82.33 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|++.|--+.-.+.. + -|+...||=|||+++.+|..-.... +. .+=+++...-||..=++.+...|. .+|+
T Consensus 77 ~p~~vQll~~l~L~~-G--~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 77 RPYDVQLLGALALHK-G--RLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp ---HHHHHHHHHHHT-T--SEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred cccHHHHhhhhhccc-c--eeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 566777666655533 2 3999999999999988777655444 33 677889999999998888886554 5699
Q ss_pred EEEEEcCCcccch-hhccCCcEEEEChhhHHH-HHh-hhcccc---cccceeEEEeccccccc
Q 000129 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKWDA-LSR-RWKQRK---YVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l~~-l~r-~~~~~~---~l~~v~liIiDEaH~l~ 1477 (2114)
+|+..+++.+.+. +..-.++|+++|...+.. .+| ++.... ......++||||||.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999876542 334456899999998742 333 222221 24678999999999553
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=84.87 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
+||+-|.+|+..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999988876544899999999999665443333311000 00011345899999999999999999988
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.016 Score=79.12 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=45.5
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
|..|||||...++++-.+ +.|+.+|++++.++...+++ +++..+.|.+|++.
T Consensus 759 L~~lPgI~~~~a~~ll~~----f~si~~l~~as~eeL~~~iG-~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKK----VKSIRELAKLSQNELNELIG-DEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHH----cCCHHHHHhCCHHHHHHHhC-CHHHHHHHHHHhcc
Confidence 778999999999997764 67999999999999888865 58889999999885
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=88.32 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
+|..+||.-|+.|+..++...= -||++|.|+|||.+..-.+.+.+..+ ...+++++|..--+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 5788999999999999987644 89999999999998877666666654 237999999999999999888
Q ss_pred HHhhccCCcEEEEEeC
Q 000129 571 SNRLQMYDVKVRELSG 586 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~G 586 (2114)
.+- |++|..+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 763 677766654
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=6.8e-05 Score=85.25 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
++-.|+-|..++..++ ..+.+++.||.|+|||++++.+.++.+..+.- -+++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~---------~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEY---------DKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC---------cEEEEEecCCCC
Confidence 4457899999999888 56679999999999999999999998876432 289999888753
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=79.28 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCch--HHHHHHHHHHHhhhcc------------C--------------CCc
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGK--TICSEFAILRNHQKAS------------E--------------TGV 1390 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGK--Tl~~~l~il~~l~~~~------------~--------------~~~ 1390 (2114)
-..+++.|.+.|..+.+-.+-+.....-+.|+ +-+|++-+++|+.+.+ . -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 34789999999999887666222222223455 5678888888875431 0 013
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCC-CCcE-E-------EEEcC---------------------Ccccc--------
Q 000129 1391 MRAVYIAPLEALAKERYRDWEIKFGQG-LGMR-V-------VELTG---------------------ETAMD-------- 1432 (2114)
Q Consensus 1391 ~k~l~I~Ptr~La~q~~~~~~~~f~~~-~g~~-v-------~~l~G---------------------~~~~~-------- 1432 (2114)
|++|+++|+|+-|..+.+.+...+... -|.. | +...| .+...
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 799999999999999999888664321 1111 1 11122 11100
Q ss_pred ------hhhccCCcEEEEChhhHHHHHhhh----cccccccceeEEEecccccccCCCCchHHHHHHHHH
Q 000129 1433 ------LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1433 ------~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~ 1492 (2114)
...+.++||+||+|=-+-.++..- .....++++.++|||-+|.+.-.. ||.++.-+.
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN---wEhl~~ifd 440 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN---WEHLLHIFD 440 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh---HHHHHHHHH
Confidence 012236799999998877666521 123378999999999999776433 444444333
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=87.88 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=63.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++..+|.-|..|+.++++. .-.||.||+|+|||+...--+++.... ..+ .+|+++|+...++|++..+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~r-plsLIQGPPGTGKTvtsa~IVyhl~~~--~~~--~VLvcApSNiAVDqLaeKIh~----- 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQR-PLSLIQGPPGTGKTVTSATIVYHLARQ--HAG--PVLVCAPSNIAVDQLAEKIHK----- 476 (935)
T ss_pred CchhhchHHHHHHHHHHcC-CceeeecCCCCCceehhHHHHHHHHHh--cCC--ceEEEcccchhHHHHHHHHHh-----
Confidence 5789999999999999984 448999999999998876555554444 344 899999999999999987763
Q ss_pred CCcEEEEEc
Q 000129 1418 LGMRVVELT 1426 (2114)
Q Consensus 1418 ~g~~v~~l~ 1426 (2114)
.|++|+.+.
T Consensus 477 tgLKVvRl~ 485 (935)
T KOG1802|consen 477 TGLKVVRLC 485 (935)
T ss_pred cCceEeeee
Confidence 367776654
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00084 Score=77.08 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHcCCCc-EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~n-vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
+||+-|.+++..++.++++ .+|+||.|+|||.+. -.+...+... +.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 4799999999999877654 667899999999864 3344444432 34899999999988876655
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=80.41 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~----nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.+-|+|.+-+.-+....+ --++.-.-|.|||+.+.-.++... .+. ..++++|+.+| .|+.+++. ++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra--~tLVvaP~VAl-mQW~nEI~-~~T~ 255 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRA--PTLVVAPTVAL-MQWKNEIE-RHTS 255 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccC--CeeEEccHHHH-HHHHHHHH-Hhcc
Confidence 567888887765543222 246778999999998755555422 222 68999999998 56677776 4544
Q ss_pred CCCcEEEEEcCCcc-cchhhccCCcEEEEChhhHHHHHhhhcc-----------cccccce--eEEEecccccccCCCCc
Q 000129 1417 GLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-----------RKYVQQV--SLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~-~~~~~l~~~~IIV~TPe~l~~l~r~~~~-----------~~~l~~v--~liIiDEaH~l~~~~g~ 1482 (2114)
...+|...+|... .+.+.+.+.|++++|...+.+..|+-.. ...+.++ --||+||||.+.+....
T Consensus 256 -gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~sn 334 (791)
T KOG1002|consen 256 -GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSN 334 (791)
T ss_pred -CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccccc
Confidence 3578888888643 4577888999999999999888876211 1134444 46899999999765433
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-----HHHHHhcCCC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAK-----DLGEWIGATS 1525 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-----dla~wl~~~~ 1525 (2114)
+-..+.. ++ ..+-.+||.|+-..+ .+..||...+
T Consensus 335 TArAV~~-L~--------tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 335 TARAVFA-LE--------TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred HHHHHHh-hH--------hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 3333221 11 234478888864321 3445555443
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=76.16 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCC-cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~-nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
+||+-|.+++..++.+++ -++|.||.|+|||.+. -.+.+.+.. .+. ++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 478999999999987665 4667799999999764 445555655 233 899999999988875553
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=88.36 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..||+.|.+|+..++...+.++|.||+|+|||.+..-.+.+.+..+ .++++++|+..-|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-----------~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-----------LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999999988778899999999999987765555544332 3799999999999999988876
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=83.22 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=67.0
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCC---ceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGK---IKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~---i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.-..+.|....++|-..++.|..-. ...|.+|.....|+|+.....|| .++.+..+...+|+.-||-
T Consensus 752 kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi----------ifdsdwnp~~d~qaqdrah 821 (1157)
T KOG0386|consen 752 KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI----------IFDSDWNPHQDLQAQDRAH 821 (1157)
T ss_pred heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE----------EecCCCCchhHHHHHHHHH
Confidence 4566778889999999999998653 46789999999999998544444 3667778888899999999
Q ss_pred CCCCCCceEEEEEeecCc
Q 000129 1712 RPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~ 1729 (2114)
|-|....-.++.++.-..
T Consensus 822 rigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 822 RIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred HhhchhheeeeeeehhhH
Confidence 987777777777776543
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=87.90 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
..+|+.|.+|+..++.+.++++|.||+|+|||.+..-.+.+.+.. +. ++++++||...+.++..++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CC--CEEEEcCcHHHHHHHHHHHHh
Confidence 478999999999998877889999999999998764444443332 33 899999999999999988774
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0023 Score=73.53 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHc--CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1341 HFNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~--~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
.++|.|.++...+.+ ++.|.+...-.|.|||.+. +|++..+..+ +. --+.+++| ++|..|.++.++++|+...
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd--g~-~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD--GS-RLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC--CC-cEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 689999999999886 3578999999999999886 7777766652 32 14445666 6799999999999999888
Q ss_pred CcEEEEEcCCccc--ch-----------hhccCCcEEEEChhhHHHHHhhhcc----------------cccccceeEEE
Q 000129 1419 GMRVVELTGETAM--DL-----------KLLEKGQIIISTPEKWDALSRRWKQ----------------RKYVQQVSLFI 1469 (2114)
Q Consensus 1419 g~~v~~l~G~~~~--~~-----------~~l~~~~IIV~TPe~l~~l~r~~~~----------------~~~l~~v~liI 1469 (2114)
+.+|..+.-+... +. .....+.|+++|||.+.++.-.+.. ..++.....=|
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdi 177 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDI 177 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeE
Confidence 8888776543222 11 1234568999999988664321110 11344555678
Q ss_pred eccccccc
Q 000129 1470 IDELHLIG 1477 (2114)
Q Consensus 1470 iDEaH~l~ 1477 (2114)
+||+|.+.
T Consensus 178 lDEsDe~L 185 (229)
T PF12340_consen 178 LDESDEIL 185 (229)
T ss_pred eECchhcc
Confidence 99998654
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0051 Score=81.15 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
++.++|..-+.. +++++=|-|+.-.+|-|||..-.- .+..+..++...| --++|+|+--|.+ +..+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~~G-------P~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQMQG-------PFLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcccCC-------CeEEeccccccCC-chhhcc
Confidence 788899887764 456777889999999999987543 3344444433222 2477899988764 334444
Q ss_pred HhhccCCcEEEEEeCCCccC----hhh-hccceEEEcCHhHHHHHHhccCCCcccccc--cEEEEeccccccc
Q 000129 572 NRLQMYDVKVRELSGDQTLT----RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~----~~~-~~~~~IiV~TPek~d~l~r~~~~~~~l~~v--~liIiDEaH~l~d 637 (2114)
.+.. .+....+.|..... .+. ....+|++||.|.. .+ +...++.+ .++||||-|.|..
T Consensus 465 kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 465 KWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 4322 45556666643221 111 35789999999963 22 33344444 5799999999854
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00076 Score=78.74 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
++.-.|..|...+..+. ..+.+++.||+|+|||+.+....++.+..+. --++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 56677899999888654 4678999999999999999888877664321 125666666654
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.022 Score=81.23 Aligned_cols=86 Identities=15% Similarity=-0.005 Sum_probs=74.5
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcC--CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAG--KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g--~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.....++|+++..+|...++.|.++ ..-.+++|.....|+|+-+..+|| +++.+.+++...|.+.||-
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi----------~~d~~wnp~~~~Qa~dRa~ 805 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVI----------LFDPWWNPAVELQAIDRAH 805 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEE----------EeccccChHHHHHHHHHHH
Confidence 4688999999999999999999986 556777788999999999888888 6888889999999999999
Q ss_pred CCCCCCceEEEEEeecCc
Q 000129 1712 RPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~ 1729 (2114)
|.|....-.++.++....
T Consensus 806 RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 806 RIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HhcCcceeEEEEeecCCc
Confidence 987777888888877765
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=62.22 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
++..++.++.-++|.||.|||||....-.+...+..... .+.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455555644546669999999998776666666543111 1337999999999999988887
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0035 Score=82.72 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=93.6
Q ss_pred CCCHHHHHHHH---HHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~---~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.++.+|..-++ .+|+.+=|-|+.-.-|-|||+.. +.+|.|+.... +-| --||||||--+.+ +.-+|+ +|..
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWG--PHLIVVpTsviLn-WEMElK-RwcP 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWG--PHLIVVPTSVILN-WEMELK-RWCP 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCC--CceEEeechhhhh-hhHHHh-hhCC
Confidence 67888887766 46888889999999999999876 55666665432 233 5689999976644 333454 5554
Q ss_pred CCCcEEEEEcCCcccc---hhhccCC---cEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1417 GLGMRVVELTGETAMD---LKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~---~~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
|++|..++|..... .+.+.+. ||.|++...+..-++.++. .+..++|+||+|.+.+.....|+.++
T Consensus 690 --glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkr----krWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 690 --GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKR----KRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred --cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHh----hccceeehhhhhhhcchhHHHHHHHh
Confidence 88999999965432 2223322 8999888776443333222 35689999999999877655666555
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0021 Score=61.56 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=42.1
Q ss_pred HHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1349 ~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
++...+.++..++|.||.|||||....-.+...+... ..+. ++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 4454444455466699999999977756555555321 1233 8999999999999988766
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0077 Score=70.54 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH----------HHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK----------ERY 1407 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~----------q~~ 1407 (2114)
++.-.|..|...+..+.+ .+.+++.||+|||||+++....++.+.. ..-. ++++.-|..+... +.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~--kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIH-KDVD--RIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCee--EEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 356788999999998766 5689999999999999997777766644 2222 6677767654321 222
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcccchhh--ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAMDLKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~~~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.-|-.-+-..+. .+.|....+ .. .+.+.|-|.... .+|. + .+. -++||+|||+.+.
T Consensus 132 ~p~~~pi~D~L~----~~~~~~~~~-~~~~~~~~~Iei~~l~----ymRG---r-tl~-~~~vIvDEaqn~~-------- 189 (262)
T PRK10536 132 APYFRPVYDVLV----RRLGASFMQ-YCLRPEIGKVEIAPFA----YMRG---R-TFE-NAVVILDEAQNVT-------- 189 (262)
T ss_pred HHHHHHHHHHHH----HHhChHHHH-HHHHhccCcEEEecHH----HhcC---C-ccc-CCEEEEechhcCC--------
Confidence 222211111100 011111111 11 134556666533 3332 2 233 3899999999884
Q ss_pred HHHHHHHHHHhhcCCCceEEEEc
Q 000129 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
...++.+.+..+.+.++|++.
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeC
Confidence 244555555567788877754
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0053 Score=65.48 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=57.8
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEE-EcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY-IAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~-I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
++..++|.||+|+|||.+....+-...........+.+++ -+|...-....+..+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 3556899999999999887555443322110001224443 3444433455555555555432111
Q ss_pred hccCCcEEEEChhhHHHHH-hhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1435 LLEKGQIIISTPEKWDALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~-r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
-.|+..+...+ +.+.. ....+|||||+|.+. . ..++..++.+.. ..++++|+.+.+
T Consensus 69 --------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 --------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 11222222222 22111 123799999999984 1 335555555543 456666555443
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=77.33 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-CCceEEEEEcccHHHHHHHHHH
Q 000129 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.+..+|.... -.+.|+.|+..++. +..++|.|+.|+|||.+.. .++..+....+ .+..++++.+||---|..+.+.
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al~-~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALALK-SNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHhh-CCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 3445554222 23799999999987 4569999999999998752 23333332111 1124899999998888877766
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhh---hc-ccccccceeEEEecccccccCCCCchHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
....+... +.. . + ....-.+-..|-.++...... +. .....-.+++|||||+-++..
T Consensus 213 ~~~~~~~l-~~~-----~----~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~------- 273 (586)
T TIGR01447 213 LRKAVKNL-AAA-----E----A--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL------- 273 (586)
T ss_pred HHhhhccc-ccc-----h----h--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-------
Confidence 65433221 100 0 0 000001112333332221110 00 011233589999999998851
Q ss_pred HHHHHHHHHHhhcCCCceEEEEc
Q 000129 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
..|..+...++...|+|++.
T Consensus 274 ---~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 274 ---PLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred ---HHHHHHHHhcCCCCEEEEEC
Confidence 12233333446788988876
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=78.06 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred HHHHHhcCCC-CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1331 LYEALYQGFK-HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1331 ~~~~l~~gf~-~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.+..+|. .. ...+.|+.|+...+. +.-++|.|++|+|||.+.. .++..+.........++++.+||.--|..+.+.
T Consensus 142 ~l~~lf~-~~~~~~d~Qk~Av~~a~~-~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 142 TLDALFG-PVTDEVDWQKVAAAVALT-RRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred HHHHhcC-cCCCCCHHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 3444553 22 235899999998887 4559999999999998752 333333321112224788999999888887776
Q ss_pred HHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhh---h-cccccccceeEEEecccccccCCCCchHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---W-KQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~-~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
........ +. .. ..+ ..-..-..|-.++...... . ....+.-..+++||||+-++.
T Consensus 219 ~~~~~~~~-~~-----~~----~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-------- 278 (615)
T PRK10875 219 LGKALRQL-PL-----TD----EQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-------- 278 (615)
T ss_pred HHhhhhcc-cc-----ch----hhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--------
Confidence 65433321 11 00 000 0000112332332211100 0 011123356899999999884
Q ss_pred HHHHHHHHHHhhcCCCceEEEEc
Q 000129 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
+..|..+...++...|+|++.
T Consensus 279 --~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 279 --LPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred --HHHHHHHHHhcccCCEEEEec
Confidence 222333444457788999886
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=70.02 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 495 QLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.|+..|-+++--+.+. +.-.++-=.||.||.-...-.|+....+++ .|+|++...-.|-.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----------~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----------KRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC----------CceEEEECChhhhhH
Confidence 5788999988655321 234778889999999888777888877653 269999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhc-cCCCcccc---------cccEEEEeccccc
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQ---------LVKLLIIDEIHLL 635 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~-~~~~~~l~---------~v~liIiDEaH~l 635 (2114)
..+.|+..... .+.+..+..- .......-...|+++|.-.+-.-.+. ......++ .=.+||+||||..
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99999876433 3444433321 11111112346899998765322211 01111111 1258999999998
Q ss_pred ccC-Cc----hhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 636 HDN-RG----PVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 636 ~d~-rg----~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
... .+ ......+..+ +..-++.|+|-+|||-
T Consensus 185 kn~~~~~~~~sk~g~avl~L----Q~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLEL----QNRLPNARVVYASATG 220 (303)
T ss_pred CCCCccCccccHHHHHHHHH----HHhCCCCcEEEecccc
Confidence 652 21 2222222222 3334788999999994
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.076 Score=71.13 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
|+=.|.+-.+.- +..-+.-.-||=|||+++.+|+.-.... +. .+.++...-=||.--..... .+-..+|++|+
T Consensus 81 ~~dVQliG~i~l-h~g~iaEM~TGEGKTL~atlp~ylnaL~---gk--gVhvVTvNdYLA~RDae~m~-~l~~~LGlsvG 153 (822)
T COG0653 81 HFDVQLLGGIVL-HLGDIAEMRTGEGKTLVATLPAYLNALA---GK--GVHVVTVNDYLARRDAEWMG-PLYEFLGLSVG 153 (822)
T ss_pred hhhHHHhhhhhh-cCCceeeeecCCchHHHHHHHHHHHhcC---CC--CcEEeeehHHhhhhCHHHHH-HHHHHcCCcee
Confidence 333444444332 3446889999999999999988643333 32 35566666666665444444 44445799999
Q ss_pred EEcCCcccc-hhhccCCcEEEEChhhHH-HHHhh----hcccccccceeEEEecccccc
Q 000129 1424 ELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRR----WKQRKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1424 ~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~----~~~~~~l~~v~liIiDEaH~l 1476 (2114)
....+.+.. .+..-.+||.++|-..+. ..+|- ...........+.|+||++.+
T Consensus 154 ~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 154 VILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred eccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 988877665 334456799999988751 11211 112234445788888888844
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0037 Score=78.74 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=60.5
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
..++|.|..|||||+++.- ++..+.....+. +++|+++..+|...+...+...... .
T Consensus 2 ~v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~ 58 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALN-LAKELQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNP--------------------K 58 (352)
T ss_pred eEEEEEecCCcCHHHHHHH-HHHHhhccccCC--ceEEEEecchHHHHHHHHHhhhccc--------------------c
Confidence 3578999999999999844 444442212334 8899999999999888777643300 0
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
.....+..|..+..-.. ........+++|||||||++..
T Consensus 59 ~~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 01122333333322111 1223467899999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.032 Score=66.54 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~---------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.+...|-+++--+.+ .+.-.++.-.||.||.-...-.|+..+.+. .. |+|++..+..|-....++|+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHH
Confidence 567777766654431 234588999999999877777778888772 22 79999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhh---ccc-----ccc-c-ceeEEEecccccccCCCC
Q 000129 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQR-----KYV-Q-QVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~-----~~l-~-~v~liIiDEaH~l~~~~g 1481 (2114)
.++.. .+.+.-+..-...+...+ ...|+++|...|..-.+.. ..+ .++ + -=++||+||+|...+..+
T Consensus 113 -DIG~~-~i~v~~l~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 113 -DIGAD-NIPVHPLNKFKYGDIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred -HhCCC-cccceechhhccCcCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 45532 333333322110111111 3369999988876654310 111 011 1 135999999998765322
Q ss_pred -----chHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1482 -----PVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1482 -----~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
......+..+. .++ ++.|+|-+|||-.
T Consensus 190 ~~~~~sk~g~avl~LQ---~~L-P~ARvvY~SATga 221 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQ---NRL-PNARVVYASATGA 221 (303)
T ss_pred cCccccHHHHHHHHHH---HhC-CCCcEEEeccccc
Confidence 22223333333 333 4788999999964
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=75.57 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
..|+.|+..++.+ .-++|+|+.|+|||.+..-. +..+...... ..+.++++.+||---|..+.+......
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~l-l~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARL-LLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHH-HHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhhh
Confidence 7999999998876 55999999999999875332 2222221100 012479999999988888777766543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0039 Score=69.69 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=75.0
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..+.+|||++|.+..+.+...+.... ...++.++.. ...++..++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~---------------------------------~~~~~~v~~q--~~~~~~~~l 52 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERL---------------------------------EEKGIPVFVQ--GSKSRDELL 52 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS----------------------------------E-ETSCEEES--TCCHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhc---------------------------------ccccceeeec--CcchHHHHH
Confidence 35789999999998877775442110 0112334443 356788899
Q ss_pred HHHhcCCceEEEecC--ccccccCCCC---cEEEEEeeeEecCC-------------------cCcCCCCCHhHHHHhHc
Q 000129 1653 ALFEAGKIKVCVMSS--SMCWGVPLTA---HLVVVMGTQYYDGQ-------------------ENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~--~la~Gvdip~---~~vVI~gt~~yd~~-------------------~~~~~~~s~~~~lQr~G 1708 (2114)
+.|+++.-.||+|+. .+..|||+|+ ..+||.|.++-... ..++.+.-...+.|.+|
T Consensus 53 ~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~G 132 (167)
T PF13307_consen 53 EEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIG 132 (167)
T ss_dssp HHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcC
Confidence 999999999999998 9999999994 45667777664332 11122333567779999
Q ss_pred ccCCCCCCCceEEEEEeecCcHHHHHH
Q 000129 1709 HASRPLLDNSGKCVILCHAPRKEYYKK 1735 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~~~~~~~ 1735 (2114)
|+-|.. +..|.++++-..-....|.+
T Consensus 133 R~iR~~-~D~g~i~llD~R~~~~~y~~ 158 (167)
T PF13307_consen 133 RLIRSE-DDYGVIILLDSRFLSKRYGK 158 (167)
T ss_dssp CC--ST-T-EEEEEEESGGGGGHHHHH
T ss_pred cceecc-CCcEEEEEEcCccccchhhh
Confidence 999964 45565555544333333433
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0064 Score=68.02 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++.+|||++|.+..+.+...+...... .++.++.- ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----------------------------------~~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEE-----------------------------------KGIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccc-----------------------------------ccceeeec--CcchHHHH
Confidence 589999999999888887766543210 01112222 35578889
Q ss_pred HHHHhCCCceEEEech--HhhhhcCCCc--eEEEEecceeccCCCC----------------cc----ccCCHHHHHHhh
Q 000129 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~--tla~GVdlP~--v~vVI~~~~~yd~~~g----------------~~----~~~s~~~~~Qr~ 868 (2114)
.+.|+++.-.||+|+. .++.|||+|+ .+.||-...||-++.. .+ .+.....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999999 9999999995 4455555666644421 01 112346778999
Q ss_pred cccCCCCCCCceEEEEEcCC
Q 000129 869 GRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~ 888 (2114)
||+-|.. +..|..+++-..
T Consensus 132 GR~iR~~-~D~g~i~llD~R 150 (167)
T PF13307_consen 132 GRLIRSE-DDYGVIILLDSR 150 (167)
T ss_dssp HCC--ST-T-EEEEEEESGG
T ss_pred Ccceecc-CCcEEEEEEcCc
Confidence 9999965 345665555443
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0073 Score=74.84 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
||+-|.+++.. ...+++|.|+.|||||.+.+.-++..+..+.. +.-+++++++|++.+.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 68899999986 45679999999999999988888777765521 234699999999999999999998765
Q ss_pred cCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhcc-CCCcccccccEEEEeccc
Q 000129 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (2114)
..+... ..+............+.|+|-..+ ..+.+.. ..... .-.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~--~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI--DPNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS--HTTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhhc--cccceeecchh
Confidence 321000 000001111112356788888776 3343332 21111 12455666665
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=74.76 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=59.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
.++|.|..|||||++++-.+... ... ..+.+++|+++..+|+..+...+.+....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hcc--------ccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 47899999999999986544443 111 12347899999999999888888664300
Q ss_pred hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
......+..|..+ +............+++|||||||+|.+
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0111223333332 111101123456789999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.018 Score=68.90 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
|+.--|..|.-|+..++..+ +-|.+.++-|||||+.|+-|.+......+.-. |+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--KiiVtRp~vpvG------------- 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--KIIVTRPTVPVG------------- 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--eEEEecCCcCcc-------------
Confidence 47788899999999998744 44678899999999999888777666534444 788877775543
Q ss_pred CCCcEEEEEcCCcccchhhccCC-----cEE----EEChhhHHHHHhhh----------cccccccceeEEEeccccccc
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKG-----QII----ISTPEKWDALSRRW----------KQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~-----~II----V~TPe~l~~l~r~~----------~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
..++.+-|.......-+.++ ..+ =++.+.+..++.+. +.+. +. =.+||||||+.|-
T Consensus 290 ---~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRS-l~-~~FiIIDEaQNLT 364 (436)
T COG1875 290 ---EDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRS-LP-DSFIIIDEAQNLT 364 (436)
T ss_pred ---cccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccc-cc-cceEEEehhhccC
Confidence 33444444322221111000 001 11223333332210 1111 11 2589999999883
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEc
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lS 1508 (2114)
-..++.+.++.+...+||++.
T Consensus 365 ----------pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----------PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----------HHHHHHHHHhccCCCEEEEcC
Confidence 234555666668899998875
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.051 Score=68.45 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
...+++.||||+|||+++.-.+....... ..+..+..+.+=+.|.-+.++.+.|.+ .+|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~----~lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGD----IMGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhh----cCCcceEe-----------
Confidence 34689999999999987753332222211 123322334445667777666665553 33444321
Q ss_pred ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCC-ceEEEEcccCCCh
Q 000129 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK-IRIVALSTSLANA 1514 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~-~riV~lSATl~n~ 1514 (2114)
+-++..+...+.+ +.+.++||||++.+...+ .. .+.+++.+......+ -.++.+|||.. .
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~ 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK-T 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-H
Confidence 1234444443333 357899999999976421 11 355666665544433 46789999974 5
Q ss_pred hHHHHHh
Q 000129 1515 KDLGEWI 1521 (2114)
Q Consensus 1515 ~dla~wl 1521 (2114)
.++.+.+
T Consensus 300 ~~~~~~~ 306 (388)
T PRK12723 300 SDVKEIF 306 (388)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.024 Score=77.62 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+++-|.+|+..+.. +..++|.|+.|+|||.+. -++++.+... ++..+++.++||-..|..+
T Consensus 322 ~~l~~~Q~~Ai~~~~~-~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-HKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred CCCCHHHHHHHHHHHh-CCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHH
Confidence 4799999999999976 457999999999999876 4555555552 2112788899998777643
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.046 Score=72.89 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000129 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (2114)
..++|+.|+..++.+ .-++|.|++|+|||.+..- ++..+..... ....++++.+||---|..+.+.......
T Consensus 153 ~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~-ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTR-RISVISGGPGTGKTTTVAK-LLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHH-HHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 458999999988765 4589999999999987532 2222222100 0234788999999998888887766544
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.042 Score=76.38 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
.|++-|.+++..++.+.+.++|.|+.|+|||.+ +-++...+.. .+.+++.++||--.|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 699999999999998777789999999999986 3344444432 135799999997765443
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.039 Score=75.91 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+++-|.+|+..++.+++.++|.|+.|+|||.+. -++...+.. .+. ++++++||--.+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~--~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGY--RVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCC--eEEEEeCcHHHHHHH
Confidence 46899999999999887777899999999999775 344555544 233 899999997666543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.046 Score=65.30 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.2
Q ss_pred HcCCCcEEEEecCCCchHHHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l 1376 (2114)
...+.|++++||+|+|||..+.-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 45678999999999999987743
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.1 Score=65.91 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=78.9
Q ss_pred EccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEEEEeCCCccChh--
Q 000129 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQ-- 593 (2114)
Q Consensus 517 ~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~v~~l~Gd~~~~~~-- 593 (2114)
.+.||||||++..-.||....++.. .-++.+..-..+.-...+|..-.. .+=.+-.+..+|....-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr----------~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR----------NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh----------hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 4689999999988888887766532 456666666665555555433211 000011111222221111
Q ss_pred -----hhccceEEEcCHhHH-HHHHhccCC---CcccccccEE-EEecccccccC-C---------chhHHHHHHHHHHH
Q 000129 594 -----QIEETQIIVTTPEKW-DIITRKSGD---RTYTQLVKLL-IIDEIHLLHDN-R---------GPVLESIVARTVRQ 653 (2114)
Q Consensus 594 -----~~~~~~IiV~TPek~-d~l~r~~~~---~~~l~~v~li-IiDEaH~l~d~-r---------g~~le~iv~rl~~~ 653 (2114)
-.....|.++|...+ ..++|..-. ...+.+.++| +-||+|+|... . -..+++.+.-.
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la--- 149 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA--- 149 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH---
Confidence 123567999999987 334443221 2334455555 56999999541 1 12233332221
Q ss_pred HhhccccccEEEEccccCChHHHHH
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVAL 678 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~ 678 (2114)
.+ ..++--++.+|||+|-..+|..
T Consensus 150 ~~-~nkd~~~lef~at~~k~k~v~~ 173 (812)
T COG3421 150 LE-QNKDNLLLEFSATIPKEKSVED 173 (812)
T ss_pred Hh-cCCCceeehhhhcCCccccHHH
Confidence 12 2344456778999985444443
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=74.77 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+.+++-|++|+..+.+..+-.+|.||+|+|||.....-|.+.+.+ +. ++|+.+||.+-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 578999999999999887878999999999998887777777766 45 99999999999999888644
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.013 Score=72.76 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
+|+-|.+++.. ...+++|.|+.|||||.+...-+...+.... ...-+++++++|+..|.++..++...++.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 3677999999999999988777777666531 12238999999999999999999876654
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.054 Score=74.53 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
..|++-|.+|+..++.++..++|.|+.|+|||.+.- ++...+... +.++++++||--.+..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~----------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA----------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC----------CCeEEEEeCcHHHHHHHH
Confidence 368999999999998876778999999999997643 333433321 347999999977665543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.034 Score=64.06 Aligned_cols=117 Identities=23% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
+-|+|+.=-+.+---+++.|.++....+.. +.|.+...-.|.|||.|. +|++..+.... ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---------SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---------CcEEEEEcC
Confidence 447777644433347899999999988863 578999999999999885 56666655431 124455555
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEE--EeCCCccChh-----------hhccceEEEcCHhHH
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRE--LSGDQTLTRQ-----------QIEETQIIVTTPEKW 608 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~--l~Gd~~~~~~-----------~~~~~~IiV~TPek~ 608 (2114)
++|..|..+.+..+++.. |-+|.. +.-+...+.. ......|+++|||.+
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhi 141 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHI 141 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHH
Confidence 689999999999888632 323322 2333333322 123556999999975
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.05 Score=75.68 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|++-|.+++..++.+++.++|.|+.|+|||++. -++.+.+.. .+. +++.++||--.+..+. ...|
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~--~G~--~V~~~ApTGkAA~~L~--------e~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA--AGY--EVRGAALSGIAAENLE--------GGSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEecCcHHHHHHHh--------hccC
Confidence 36999999999999987777899999999999863 445555544 233 8999999976654432 1112
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcc-cccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+.. .|-.+| +..|.. ...+...++|||||+-+++.. .+..++. .. .
T Consensus 412 i~a---------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~---~a---~ 458 (988)
T PRK13889 412 IAS---------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLS---HA---A 458 (988)
T ss_pred cch---------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCHH---HHHHHHH---hh---h
Confidence 211 122222 223322 234667789999999998632 2222221 11 1
Q ss_pred CCCceEEEEcc
Q 000129 1499 ENKIRIVALST 1509 (2114)
Q Consensus 1499 ~~~~riV~lSA 1509 (2114)
....++|++.=
T Consensus 459 ~~garvVLVGD 469 (988)
T PRK13889 459 DAGAKVVLVGD 469 (988)
T ss_pred hCCCEEEEECC
Confidence 34678888763
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.064 Score=57.71 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
..++++.||+|+|||..+.. +.+.+.. ... .++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~--~~~--~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFR--PGA--PFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhc--CCC--CeEEEehh
Confidence 56799999999999976643 3333332 122 55665543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.077 Score=63.77 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1341 HFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~---il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
.+++.|..++.. +.+.+.|++++||+|+|||..+. ++.+.+.. .+. +++|+ +..+|+.+.
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--~g~--~v~f~-~~~~L~~~l 149 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE--NGW--RVLFT-RTTDLVQKL 149 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH--cCC--ceeee-eHHHHHHHH
Confidence 456677766643 44677899999999999997763 44444443 122 55554 445565554
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=72.88 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+.+++-|.+|+..+++..+-+++.||+|+|||......|.+.+.++ -++|+.+|+..-+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-----------CeEEEEcCchHHHHHHHHHhc
Confidence 4789999999999998877789999999999999888888777664 289999999999998888654
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.078 Score=63.80 Aligned_cols=64 Identities=25% Similarity=0.272 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
|+.-.|..|.-|++.++..+ +-|.+.++-|||||+.|+.+.+.+....+. .-|+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--------y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--------YRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--------hceEEEecCCcCcc
Confidence 88889999999999877654 346688999999999999888877654321 23788887876653
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.031 Score=73.22 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2114)
+...+.|++-.+|-.|-|=|+|=.|.+ ..+.+ |..+=+|.+||.-|-.-+..|.-+
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV 536 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERV 536 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeecccccee
Confidence 356899999999999999999999887 44433 677889999999996655555544
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.089 Score=62.43 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+..++++.||+|+|||..+ .+|.+.+.. .+ ..+ +.++..+|..++..
T Consensus 100 ~~~~l~l~G~~GtGKThLa-~AIa~~l~~---~g-~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLA-AAIGNRLLA---KG-RSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred cCCeEEEECCCCCCHHHHH-HHHHHHHHH---cC-CCe-EEEEHHHHHHHHHH
Confidence 3467999999999999876 556666655 22 134 44455666665544
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.018 Score=61.40 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQ 535 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~ 535 (2114)
++..++|+||+|+|||.++...+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999999876554443
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.044 Score=69.33 Aligned_cols=124 Identities=25% Similarity=0.367 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH--HHHHHHH
Q 000129 1341 HFNPIQTQVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER--YRDWEIK 1413 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il-----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~--~~~~~~~ 1413 (2114)
.+|+-|.+++..++ ..+.+++|.||-|+|||.++ -++...+.. .+. .+++++||-.-|..+ -..+.+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHh
Confidence 47899999988873 34568999999999999765 333333333 233 789999998777655 2222222
Q ss_pred hcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1414 f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
|+ +.+.. .. .... .+.+-. .....++.++++|+||+=++. ...++.+-.+++.
T Consensus 76 f~----i~~~~----~~-------~~~~---~~~~~~------~~~~~l~~~~~lIiDEism~~---~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 76 FG----IPINN----NE-------KSQC---KISKNS------RLRERLRKADVLIIDEISMVS---ADMLDAIDRRLRD 128 (364)
T ss_pred cC----ccccc----cc-------cccc---cccccc------hhhhhhhhheeeecccccchh---HHHHHHHHHhhhh
Confidence 22 11100 00 0001 222211 123357789999999999885 3345556566666
Q ss_pred HHh
Q 000129 1494 IAS 1496 (2114)
Q Consensus 1494 i~~ 1496 (2114)
+..
T Consensus 129 i~~ 131 (364)
T PF05970_consen 129 IRK 131 (364)
T ss_pred hhc
Confidence 644
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.23 Score=68.10 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=46.2
Q ss_pred cccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhc
Q 000129 1144 LRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195 (2114)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1195 (2114)
|+.||||++..+++|-.+==+++++..++.++|.+++|.++.|+.|++++|.
T Consensus 759 L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 7899999999999987763378889999999999999988999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.041 Score=59.26 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2114)
...+++.||+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 567999999999999765433
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.2 Score=63.18 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=73.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
..++++||||+|||.++.-.+.+........ .....++.+=+.|.-+.++...+.+.+ |+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-----g~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv~~-------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-----SLNIKIITIDNYRIGAKKQIQTYGDIM---GIPVKA-------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-----CCeEEEEeccCccHHHHHHHHHHhhcC---CcceEe--------
Confidence 4689999999999988754333322211000 123344555566777777776666543 444321
Q ss_pred hhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcccc-ccEEEEcccc
Q 000129 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (2114)
Q Consensus 592 ~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~-~riv~lSATl 670 (2114)
+-+++.+...... ++..++||||++.+.+.. .. -+.++...+...... -.++.+|||.
T Consensus 239 ----------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ----------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 1234443222222 245799999999987521 11 134444444433333 4678899996
Q ss_pred CChHHHHHHHh
Q 000129 671 PNYEDVALFLR 681 (2114)
Q Consensus 671 pn~~dva~~l~ 681 (2114)
. ..++.+.+.
T Consensus 298 ~-~~~~~~~~~ 307 (388)
T PRK12723 298 K-TSDVKEIFH 307 (388)
T ss_pred C-HHHHHHHHH
Confidence 4 566665554
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.05 Score=71.72 Aligned_cols=79 Identities=28% Similarity=0.316 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHH---HHHHhcc--------C-------C---CCC----C
Q 000129 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTIL---QQLALNR--------N-------D---DGS----F 546 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il---~~l~~~~--------~-------~---~g~----~ 546 (2114)
.|++.|...+..++. ...|.++-.|||+|||++.+-..| +...... . + +|. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999887776654 345799999999999987544333 3332110 0 0 000 0
Q ss_pred C------CCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 547 N------HSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 547 ~------~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
. ...+++.|-.-|.+-..|+++++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 13578999999998889999998874
|
|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.019 Score=52.31 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=49.5
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHh
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~ 1990 (2114)
.|.++||||+.++++|.+.| +.|+.||..+++++...+-++++...+.+.+.++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G---~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAG---IKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTT---CSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcC---CCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999 9999999999998888888899999999988775
|
... |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.2 Score=58.63 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1343 NPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~----nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
|..=..+...+.++.+ .++|.||+|+|||-. +.++.+.+.+..++. +++|+... +.+......++.
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~------ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD------ 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc------
Confidence 4433445555544332 489999999999985 467777666543444 88887643 444433332220
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+.+..+..+ +...++++||++|.+.+.. ..-+.+...+..+..
T Consensus 86 ----------------------------~~~~~~~~~------~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~-- 128 (219)
T PF00308_consen 86 ----------------------------GEIEEFKDR------LRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE-- 128 (219)
T ss_dssp ----------------------------TSHHHHHHH------HCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH--
T ss_pred ----------------------------ccchhhhhh------hhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh--
Confidence 011112222 4578999999999987532 233455555555433
Q ss_pred CCCceEEEEcccCCC
Q 000129 1499 ENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n 1513 (2114)
.+.++|+.|...|.
T Consensus 129 -~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 129 -SGKQLILTSDRPPS 142 (219)
T ss_dssp -TTSEEEEEESS-TT
T ss_pred -hCCeEEEEeCCCCc
Confidence 35678877766654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.046 Score=72.62 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=83.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..+|..|++|+..++...+-.+|.|=+|+|||......| +.+.. .++ +++..+=|...++.+.-.++ .++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--~gk--kVLLtsyThsAVDNILiKL~-~~~--- 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--LGK--KVLLTSYTHSAVDNILIKLK-GFG--- 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--cCC--eEEEEehhhHHHHHHHHHHh-ccC---
Confidence 5689999999999999989989999999999998764443 33333 244 89999999999998888776 232
Q ss_pred CcEEEEEcC---------------Ccccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1419 GMRVVELTG---------------ETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1419 g~~v~~l~G---------------~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
+.+.-+.. +.+.. .+.+.+..|+.||-=-+...+. ..+.++++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hccccCEEEEccccccc
Confidence 22222221 11111 2345667888888432221111 23458999999998765
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.16 Score=58.36 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=70.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccC
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~ 1438 (2114)
.+++.||||+|||++..=...+...+ +..+..+.+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 47889999999998764333332222 332233444456878888888777555 44443311110
Q ss_pred CcEEEEChhh-HHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1439 GQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1439 ~~IIV~TPe~-l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
.|.. +...++. ..-++.++|+||=+.+. +.-+..+..++.+.....+.-.++.+|||...
T Consensus 67 ------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 ------DPAEIAREALEK----FRKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------CHHHHHHHHHHH----HHHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hhHHHHHHHHHH----HhhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 1111 1112221 11245789999988643 33344667777766666666778899999854
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.098 Score=62.11 Aligned_cols=48 Identities=15% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..+++++||+|+|||-.+.. |.+.+... +..++| .+..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~----------g~~v~~-i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK----------GRSVIV-VTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc----------CCCeEE-EEHHHHHHHHHHHH
Confidence 45799999999999987643 44444332 123444 45566766654443
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=59.60 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHc-------CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYN-------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~-------~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
|...++.|.+++..+.. +..++++.|++|+|||..+ .++.+.+... +. .++|+ +..+|..
T Consensus 74 f~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa-~aia~~l~~~--g~--~v~~i-t~~~l~~ 140 (244)
T PRK07952 74 YRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLA-AAICNELLLR--GK--SVLII-TVADIMS 140 (244)
T ss_pred ccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHhc--CC--eEEEE-EHHHHHH
Confidence 33345566666554431 1247999999999999877 4566666551 22 55555 4444433
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.083 Score=72.45 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
..+++-|.+|+..+..+ ..++|.|+.|+|||.+.- .++..+.... ....++.++||-.-|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l~-~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTITR-AIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHHH-HHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 37899999999988654 579999999999998653 3444443221 1146888999988776443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.17 Score=58.04 Aligned_cols=130 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
.++++||||+|||....--..+...++ .+.-.+-+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~---- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES---- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch----
Confidence 367899999999987654444443332 12334444567778888888887765 44443321110
Q ss_pred hhhccceEEEcCHhH-H-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 593 QQIEETQIIVTTPEK-W-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek-~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.|.. + +.+.+ ...+++++|+||-+-+ .+.-...+..+....+...+.--++.+|||.
T Consensus 67 -----------~~~~~~~~~l~~-----~~~~~~D~vlIDT~Gr-----~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 67 -----------DPAEIAREALEK-----FRKKGYDLVLIDTAGR-----SPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp -----------CHHHHHHHHHHH-----HHHTTSSEEEEEE-SS-----SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred -----------hhHHHHHHHHHH-----HhhcCCCEEEEecCCc-----chhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 1211 1 11111 1123478999999865 3334444555544444445566678899997
Q ss_pred CChHHHHHHH
Q 000129 671 PNYEDVALFL 680 (2114)
Q Consensus 671 pn~~dva~~l 680 (2114)
.. +++..+.
T Consensus 126 ~~-~~~~~~~ 134 (196)
T PF00448_consen 126 GQ-EDLEQAL 134 (196)
T ss_dssp GG-HHHHHHH
T ss_pred Ch-HHHHHHH
Confidence 53 4444333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.082 Score=69.86 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHH---HHHHHHHhhhcc--------C-------------------
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICS---EFAILRNHQKAS--------E------------------- 1387 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~---~l~il~~l~~~~--------~------------------- 1387 (2114)
.|+|.|..-...++ ....|.++-+|||+|||++. .||-.+++.... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 57888987766654 34667999999999999654 455555554110 0
Q ss_pred -------CCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1388 -------TGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1388 -------~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+.+++.|-.-|..-..|+.++++ +++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElr-rT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELR-RTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHh-hcC
Confidence 012678888888888889998887 443
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.2 Score=70.39 Aligned_cols=124 Identities=18% Similarity=0.268 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|++-|.+++..+..++.-++|.|+.|+|||++. -++.+.+.. .+. +++-++||---+..+.+ . .|
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~--~V~g~ApTgkAA~~L~e----~----~G 446 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGY--RVVGGALAGKAAEGLEK----E----AG 446 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEEcCcHHHHHHHHH----h----hC
Confidence 47999999999998776777899999999999765 345555554 233 89999999766654322 1 12
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhc-ccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+.. .|-.+| +.+|. ....+..-++|||||+.+++.. .+..++..+.
T Consensus 447 i~a---------------------~TIas~---ll~~~~~~~~l~~~~vlVIDEAsMv~~~---~m~~Ll~~~~------ 493 (1102)
T PRK13826 447 IQS---------------------RTLSSW---ELRWNQGRDQLDNKTVFVLDEAGMVASR---QMALFVEAVT------ 493 (1102)
T ss_pred CCe---------------------eeHHHH---HhhhccCccCCCCCcEEEEECcccCCHH---HHHHHHHHHH------
Confidence 221 121121 11221 2234566789999999998632 2222332221
Q ss_pred CCCceEEEEcc
Q 000129 1499 ENKIRIVALST 1509 (2114)
Q Consensus 1499 ~~~~riV~lSA 1509 (2114)
....++|++.=
T Consensus 494 ~~garvVLVGD 504 (1102)
T PRK13826 494 RAGAKLVLVGD 504 (1102)
T ss_pred hcCCEEEEECC
Confidence 24678887763
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.07 Score=63.93 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=71.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCC--ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~--~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
.|++|+|+||.|||.+..-..-.|-....... .+-+++-+|...-....|..+-..++-..+- .+.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~~~~~~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------RDRVAKL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------CCCHHHH--
Confidence 48999999999999866443333222111111 1344555777777777777766665532100 0000000
Q ss_pred ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEE
Q 000129 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~l 1507 (2114)
-.+...+++. .+++++||||+|.+....+..-..++.-+|++...+ .+.+|++
T Consensus 134 ----------~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v 186 (302)
T PF05621_consen 134 ----------EQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV 186 (302)
T ss_pred ----------HHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe
Confidence 0111234443 357899999999887655555677888889887655 4556655
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.13 Score=61.75 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCHHHHHHHH---HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 496 LNRVQSRVYK---SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 496 l~~iQ~~~i~---~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
+++.|..++. ..+....|++++||+|+|||-.+.......+..+ .+++|+ +...|+.++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-----------~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-----------WRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-----------Cceeee-eHHHHHHHHH
Confidence 3445555553 2345678999999999999976653333333221 245554 4555655553
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.13 Score=61.62 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=21.6
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
+....|++++||+|+|||..+.-......
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34567999999999999987754444333
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.68 Score=57.68 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
+..+.+.||||.|||+.-.--+.+....+.. .+..+|=+=..|-=|.++.+.+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~--------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL--------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHh---CCce---------
Confidence 5678999999999997654333333322211 12223333345666777777776654 3433
Q ss_pred ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.+|-+|.-++.-. ..++++++|.||=+-+ ++.-...++.+........+--..+.+|||
T Consensus 264 ---------~vv~~~~el~~ai------~~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat- 322 (407)
T COG1419 264 ---------EVVYSPKELAEAI------EALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSAT- 322 (407)
T ss_pred ---------EEecCHHHHHHHH------HHhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecC-
Confidence 3444565442211 2345568888888753 333334444544444443344456889999
Q ss_pred CChHHHHHHHhccccCceEeecCCcccccceeEEE
Q 000129 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2114)
Q Consensus 671 pn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2114)
..++|+.+.+. .|+.+++...++
T Consensus 323 ~K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 323 TKYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred cchHHHHHHHH------------HhccCCcceeEE
Confidence 46788877664 345666665443
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.085 Score=57.07 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCC-ceEEEecCccccccCCCCc---EEEEEeeeEecCCc----------------C-
Q 000129 1635 GVGYLHEGLNKTDQEVVSALFEAGK-IKVCVMSSSMCWGVPLTAH---LVVVMGTQYYDGQE----------------N- 1693 (2114)
Q Consensus 1635 gV~~~H~~ls~~dR~~v~~~F~~g~-i~VLVaT~~la~Gvdip~~---~vVI~gt~~yd~~~----------------~- 1693 (2114)
+..++..+....+...+++.|++.. ..||++|..+..|+|+|+. .+||.|.++-.... .
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4456666777777888999998754 3799999889999999964 56777766542220 0
Q ss_pred c---CCCCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1694 A---HTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1694 ~---~~~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
+ +.|.....+.|.+||+-|.. +..|.++++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 0 11223567889999999975 456655544
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.2 Score=70.29 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
..|++-|.+++..+..++.-++|.|+-|+|||.+.- ++...+.. .+.+++-++||-.-|..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHH
Confidence 479999999999887667778999999999997643 33333332 235899999997766554
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.063 Score=67.95 Aligned_cols=108 Identities=23% Similarity=0.368 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH--H
Q 000129 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV--V 567 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~--~ 567 (2114)
+||+-|..++..++ ....++.|.||-|+|||.+.- ++.+.+.. .+..+++++||-.-|.-+ .
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhccCC
Confidence 47899999988773 345679999999999998642 22222221 234799999998776655 2
Q ss_pred HHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
..+...| ++.+.. .. .... .+++ .......++.+++|||||+=+++
T Consensus 70 ~T~hs~f---~i~~~~----~~-------~~~~---~~~~------~~~~~~~l~~~~~lIiDEism~~ 115 (364)
T PF05970_consen 70 RTIHSFF---GIPINN----NE-------KSQC---KISK------NSRLRERLRKADVLIIDEISMVS 115 (364)
T ss_pred cchHHhc---Cccccc----cc-------cccc---cccc------cchhhhhhhhheeeecccccchh
Confidence 3333333 222211 00 0000 2221 11122456778999999999875
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.29 Score=65.53 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=25.2
Q ss_pred cE-EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 513 nv-lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
++ +|+||||+|||.+.-.. ++.+...... .....+.++||=-
T Consensus 782 nvLYIyG~PGTGKTATVK~V-LrELqeeaeq---k~lp~f~vVYINC 824 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV-IQLLQHKTKQ---KLLPSFNVFEING 824 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHHHhh---ccCCCceEEEEeC
Confidence 45 59999999999987654 3444322111 0123467788843
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.052 Score=74.11 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.||+-|.+|+.. ...+++|.|..|||||.+...-+.+.+..... ++-++++++.|+..|.++.+++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999864 34569999999999999987777777654211 23379999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
+.. ....+.|+|...|
T Consensus 72 ~~~------------------~~~~v~i~TfHS~ 87 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTL 87 (672)
T ss_pred Ccc------------------cccCcEEEcHHHH
Confidence 310 0124778898876
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.061 Score=72.93 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+|+. .+.++++|.|..|||||.+..--+...+..+.. .+-++++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999885 344678999999999999987666655544321 2347999999999999999999876
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
++ ...|-|+|-..|
T Consensus 265 lg---------------------~~~v~v~TFHSl 278 (684)
T PRK11054 265 LG---------------------TEDITARTFHAL 278 (684)
T ss_pred cC---------------------CCCcEEEeHHHH
Confidence 42 035778888876
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.16 Score=59.98 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=27.9
Q ss_pred ccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
..+.++.||+||||.|..+- -+.+++.++......|+++..--+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCCh
Confidence 44557999999999885321 122334445556677888776554
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.1 Score=64.06 Aligned_cols=61 Identities=31% Similarity=0.316 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
...+++.|.+.+..+...+.|++|+||||||||+.. -+++..+....+.. +++++--..|+
T Consensus 114 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~--ri~tiEd~~El 174 (299)
T TIGR02782 114 AGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTD--RVVIIEDTREL 174 (299)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCc--eEEEECCchhh
Confidence 346788888999988888899999999999999876 55666665422334 88999888887
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.44 Score=56.54 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHh
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (2114)
.++++++|+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 469999999999998765 44444443
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.087 Score=64.78 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
...+++.|.+.+..+...+.|++|+|+||||||+.. -+++..+....+.. +++.+-.+.||.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~--rivtiEd~~El~ 187 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPED--RLVILEDTAEIQ 187 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCc--eEEEecCCcccc
Confidence 345788999999999888999999999999999865 56666654322333 888888888873
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.092 Score=55.88 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.++++.||+|||||.++... ...+.. ... .++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~--~~~--~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGP--PGG--GVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCC--CCC--CEEEECCEEccccC
Confidence 457999999999999887443 333322 111 47788777655443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.29 Score=61.37 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=65.1
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~ 1432 (2114)
..+.++++.||||+|||+.+...+.+.... .... ++.++. +.|.-+.++.+.|.+.+ |+.+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~--~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~--------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMR-FGAS--KVALLTTDSYRIGGHEQLRIFGKIL----GVPVH--------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEecccccccHHHHHHHHHHHc----CCceE---------
Confidence 346789999999999998875444333322 1112 443332 22444556666665433 33332
Q ss_pred hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
.+.+++.+...+.+ +.+.++|+||.+-.... ... +...+..+.......-+++.+|||..
T Consensus 199 ---------~~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~--d~~---l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 199 ---------AVKDGGDLQLALAE------LRNKHMVLIDTIGMSQR--DRT---VSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred ---------ecCCcccHHHHHHH------hcCCCEEEEcCCCCCcc--cHH---HHHHHHHHhccCCCCeEEEEecCccC
Confidence 23334444334443 34568999999964321 112 33333333222223456888999974
Q ss_pred C
Q 000129 1513 N 1513 (2114)
Q Consensus 1513 n 1513 (2114)
.
T Consensus 259 ~ 259 (374)
T PRK14722 259 G 259 (374)
T ss_pred h
Confidence 3
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=61.09 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2114)
.++++.||+|+|||.++-...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999885543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.44 Score=59.78 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=66.5
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEe
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELS 585 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2114)
+..+.+++++||||+|||..+...+.+...... ..++.++. +.|.=+.++.+.+.+.+ |+.+...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G---------~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~~~- 200 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFG---------ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVHAV- 200 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCeEEEEecccccccHHHHHHHHHHHc---CCceEec-
Confidence 344668999999999999887554444433221 11343332 23444666666666543 4444322
Q ss_pred CCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
.+++.+...... +.+.++|+||.+-+.. +...+...+..+. ......-+++.
T Consensus 201 -----------------~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLV 252 (374)
T PRK14722 201 -----------------KDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLL 252 (374)
T ss_pred -----------------CCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEE
Confidence 223222122222 2345899999996432 1122222222221 11223345888
Q ss_pred EccccCChHHHHHH
Q 000129 666 LSATLPNYEDVALF 679 (2114)
Q Consensus 666 lSATlpn~~dva~~ 679 (2114)
+|||.. .+++...
T Consensus 253 LsAts~-~~~l~ev 265 (374)
T PRK14722 253 LNATSH-GDTLNEV 265 (374)
T ss_pred ecCccC-hHHHHHH
Confidence 999953 4444433
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.14 Score=67.43 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE-----------EEEee
Q 000129 1658 GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC-----------VILCH 1726 (2114)
Q Consensus 1658 g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~-----------iil~~ 1726 (2114)
.-.+.|++-.+|-.|.|=|+|-.|++ ....-|..+=+|-+||.-|-..+..|.- .+++.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck----------L~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~ 551 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK----------LRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVN 551 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE----------ecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEec
Confidence 34789999999999999999999882 2233466778999999999654555543 44677
Q ss_pred cCcHHHHHHHH
Q 000129 1727 APRKEYYKKFL 1737 (2114)
Q Consensus 1727 ~~~~~~~~~~l 1737 (2114)
.+.+++.+.+.
T Consensus 552 ~sek~Fv~~Lq 562 (985)
T COG3587 552 ESEKDFVKALQ 562 (985)
T ss_pred ccHHHHHHHHH
Confidence 77777777666
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.75 Score=60.56 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
++|.=.+-++.+++ +..-.++.+|=|.|||.+..+.+...+... +.+|+|.+|...-++++++.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~----------Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL----------EIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc----------CCeEEEECCChhhHHHHHHHHHHH
Confidence 34444444444432 223467789999999998877666544311 348999999999999999998888
Q ss_pred hccCCc--------EEEEEeCCCc-----cChhhh-ccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCC
Q 000129 574 LQMYDV--------KVRELSGDQT-----LTRQQI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2114)
Q Consensus 574 ~~~~gi--------~v~~l~Gd~~-----~~~~~~-~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (2114)
+..+|. ++....|+.. ...... ..+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH--
Confidence 764331 1222223211 000000 11223332211 1 111113568999999999874
Q ss_pred chhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
+.++.++--+ . ..+.+++.+|.+- .....-.+|.
T Consensus 309 -~~l~aIlP~l----~--~~~~k~IiISS~~-~~~s~tS~L~ 342 (752)
T PHA03333 309 -GALLSVLPLM----A--VKGTKQIHISSPV-DADSWISRVG 342 (752)
T ss_pred -HHHHHHHHHH----c--cCCCceEEEeCCC-CcchHHHHhh
Confidence 4455544332 2 2467778888773 2333344443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.54 Score=62.99 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 496 LNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 496 l~~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
...-|.+.+..++..+. -+++.|.=|=|||.+.-+++. .+.... ....+++.+|+++-++..++-..+.+
T Consensus 215 dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~--------~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 215 DQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA--------GSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred hHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc--------CCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 33444445666676655 788999999999999887773 333221 13489999999999999988888877
Q ss_pred ccCCcEEEEEeCC-CccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd-~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (2114)
..+|.+-...... .......-....|=+-+|.. .. ..-+++|||||=.++ -|.++.++.+
T Consensus 286 ~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~-----------a~-~~~DllvVDEAAaIp---lplL~~l~~~---- 346 (758)
T COG1444 286 EFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDD-----------AQ-EEADLLVVDEAAAIP---LPLLHKLLRR---- 346 (758)
T ss_pred HHhCCccccccccccceeeecCCceeEEeeCcch-----------hc-ccCCEEEEehhhcCC---hHHHHHHHhh----
Confidence 7776553222211 11111111233466677763 11 115899999998775 3444444332
Q ss_pred HhhccccccEEEEccccCChHH
Q 000129 654 IETTKEHIRLVGLSATLPNYED 675 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~d 675 (2114)
.+.++||.|+..|+-
T Consensus 347 -------~~rv~~sTTIhGYEG 361 (758)
T COG1444 347 -------FPRVLFSTTIHGYEG 361 (758)
T ss_pred -------cCceEEEeeeccccc
Confidence 345999999987654
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.45 Score=63.87 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=23.8
Q ss_pred cE-EEEecCCCchHHHHHHHHHHHhhhccCC---CceEEEEEc
Q 000129 1359 NV-LVAAPTGSGKTICSEFAILRNHQKASET---GVMRAVYIA 1397 (2114)
Q Consensus 1359 nv-li~ApTGSGKTl~~~l~il~~l~~~~~~---~~~k~l~I~ 1397 (2114)
++ +|.|+||+|||++.-. +++.+...... ..+.++||-
T Consensus 782 nvLYIyG~PGTGKTATVK~-VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYS-VIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHHHhhccCCCceEEEEe
Confidence 45 5999999999998754 44555432111 124667774
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.63 Score=57.96 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P-tr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
+..+.+.||||.|||+...=...+...... ... -+++..- .|.=|.++.+.+. +.+|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~k-VaiITtDtYRIGA~EQLk~Ya----~im~vp~------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKK-VAIITTDTYRIGAVEQLKTYA----DIMGVPL------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-Ccc-eEEEEeccchhhHHHHHHHHH----HHhCCce-------------
Confidence 677999999999999764332233332211 221 3444443 3655666555444 3334444
Q ss_pred ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh
Q 000129 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~ 1515 (2114)
.++-+|.-|...+.. +++.++|.||=+-+= +.=...++.|+.+......--..+.+|||. ..+
T Consensus 264 -----~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs-----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~ 326 (407)
T COG1419 264 -----EVVYSPKELAEAIEA------LRDCDVILVDTAGRS-----QYDKEKIEELKELIDVSHSIEVYLVLSATT-KYE 326 (407)
T ss_pred -----EEecCHHHHHHHHHH------hhcCCEEEEeCCCCC-----ccCHHHHHHHHHHHhccccceEEEEEecCc-chH
Confidence 345566666554443 556688888866532 222336777777766554556678899996 666
Q ss_pred HHHHHhc
Q 000129 1516 DLGEWIG 1522 (2114)
Q Consensus 1516 dla~wl~ 1522 (2114)
|+.+-+.
T Consensus 327 dlkei~~ 333 (407)
T COG1419 327 DLKEIIK 333 (407)
T ss_pred HHHHHHH
Confidence 6666553
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.6 Score=58.18 Aligned_cols=129 Identities=20% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE-c-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-A-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I-~-Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
...+.++||||+|||+.+...... +.. .+. ++.++ + |.|.-+.++...|.+. .|+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~--~Gk--kVglI~aDt~RiaAvEQLk~yae~----lgipv~----------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKK--TVGFITTDHSRIGTVQQLQDYVKT----IGFEVI----------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHH--cCC--cEEEEecCCcchHHHHHHHHHhhh----cCCcEE-----------
Confidence 356899999999999876444333 322 122 44333 3 4454444444444422 233321
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
.+.+|..+...+..... -.+.++|+||-+=+...+ ...+..+..+.....+...++.+|||.. .
T Consensus 301 -------v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk-~ 364 (436)
T PRK11889 301 -------AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMK-S 364 (436)
T ss_pred -------ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccC-h
Confidence 23356665544443221 125789999988654322 1234444444443333444566999864 3
Q ss_pred hHHHHHh
Q 000129 1515 KDLGEWI 1521 (2114)
Q Consensus 1515 ~dla~wl 1521 (2114)
.++.+.+
T Consensus 365 ~d~~~i~ 371 (436)
T PRK11889 365 KDMIEII 371 (436)
T ss_pred HHHHHHH
Confidence 3443333
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.31 Score=63.30 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=63.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
..+++.|++|+|||... .++.+.+....++. +++|+.+ .++..+....+.. . .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~----~--~----------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQK----T--H----------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHH----h--h-----------------
Confidence 35899999999999765 56666665533333 7787766 4555555444331 0 0
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
+.+..+..+ +.+++++|+||+|.+.... ...+.+..-+..+.. ...++|+.|-..|
T Consensus 195 ---------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~-~~~e~lf~l~N~~~~---~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE-KTNEIFFTIFNNFIE---NDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH------hccCCEEEEeccccccCCH-HHHHHHHHHHHHHHH---cCCcEEEECCCCH
Confidence 111112222 4567899999999885422 234555555554432 3446666655443
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.19 Score=67.19 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
...||.-|++|+..++...+-.||.|=+|+|||......|--.+.. +.+|+..+=|.+-+.-+.-+++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-----------gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-----------GKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-----------CCeEEEEehhhHHHHHHHHHHhc
Confidence 3489999999999999998889999999999998765443322222 34899999998887777666554
Q ss_pred hhccCCcEEEEEeCCCccCh--------------------hhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEec
Q 000129 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~--------------------~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
.++....+..+....+ ...+.+.|+.||==-+ +.+ ...+.+++.||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-------f~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-------FVNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-------hhccccCEEEEcc
Confidence 3554443333222111 1235677888873211 111 1224589999999
Q ss_pred ccccc
Q 000129 632 IHLLH 636 (2114)
Q Consensus 632 aH~l~ 636 (2114)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98764
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.085 Score=60.39 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=24.5
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
-.++.||+|+|||+.+.-.+.+.... +. +++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 36889999999998775555444333 33 7787766
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.15 Score=61.48 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=82.5
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE-cCCcccc-
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL-TGETAMD- 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l-~G~~~~~- 1432 (2114)
..++-++|+|+||.|||..+.-.+.+.+... +. .++|+..-- -..+++.++-..... +....+ .|....+
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~--~vly~SlEm-~~~~l~~R~la~~s~---v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG--GY--PVLYFSLEM-SEEELAARLLARLSG---VPYNKIRSGDLSDEE 88 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SS--EEEEEESSS--HHHHHHHHHHHHHT---STHHHHHCCGCHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc--CC--eEEEEcCCC-CHHHHHHHHHHHhhc---chhhhhhccccCHHH
Confidence 3456789999999999998877777666551 23 788886531 122333333333322 211111 1222211
Q ss_pred -------hhhccCCcEEE-E----ChhhHHHHHhhhcccccccceeEEEecccccccCC-----CCchHHHHHHHHHHHH
Q 000129 1433 -------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1433 -------~~~l~~~~IIV-~----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~le~i~srl~~i~ 1495 (2114)
...+....+.| . |++.+....++++.. ...+++||||=+|.+... ....+..+..+++.+.
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA 166 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALA 166 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--STTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--ccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11233444443 3 444555566654433 278999999999998763 2233456677788877
Q ss_pred hhcCCCceEEEEccc
Q 000129 1496 SQVENKIRIVALSTS 1510 (2114)
Q Consensus 1496 ~~~~~~~riV~lSAT 1510 (2114)
..+ ++.+|++|..
T Consensus 167 ~~~--~i~vi~~sQl 179 (259)
T PF03796_consen 167 KEL--NIPVIALSQL 179 (259)
T ss_dssp HHH--TSEEEEEEEB
T ss_pred HHc--CCeEEEcccc
Confidence 654 6888888765
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.29 Score=60.67 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=67.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc--cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP--LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P--tr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
..+++.||+|+|||+...-.+ ..+.. .+. +++++.. .|.-+.++.+.+...+ |+.+.. +....+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~d--- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGAD--- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCCC---
Confidence 457889999999998654333 23333 222 6665543 3455555455555443 444321 111111
Q ss_pred ccCCcEEEEChhh-HHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1436 LEKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1436 l~~~~IIV~TPe~-l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
|.. +...++.. ...+.++||||.++++..+. .++..++.+.....+...++.++||..+
T Consensus 207 ----------p~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 ----------PAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ----------HHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccch
Confidence 111 11111111 12356899999999875322 2556666665555667778889998764
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.73 Score=57.50 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=65.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-c-ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-A-PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i-a-P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2114)
..+.++||||+|||..+.......... +.++.++ + |.|.-+.++...+.+. .|+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-----------GkkVglI~aDt~RiaAvEQLk~yae~---lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-----------KKTVGFITTDHSRIGTVQQLQDYVKT---IGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCCcchHHHHHHHHHhhh---cCCcEE-------
Confidence 468899999999998765544433222 1234333 3 4554455554444442 233222
Q ss_pred cChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 590 LTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 590 ~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
.+.+|..+ +.+..... ..++++|+||-+=+.+.. ...+..+.+.+....+...++.+||
T Consensus 301 -----------v~~d~~~L~~aL~~lk~----~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFKE----EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred -----------ecCCHHHHHHHHHHHHh----ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECC
Confidence 23356655 23322111 124789999988654321 1223333333333334444666999
Q ss_pred ccCChHHHHHHHh
Q 000129 669 TLPNYEDVALFLR 681 (2114)
Q Consensus 669 Tlpn~~dva~~l~ 681 (2114)
|.. ..++...+.
T Consensus 361 Ttk-~~d~~~i~~ 372 (436)
T PRK11889 361 SMK-SKDMIEIIT 372 (436)
T ss_pred ccC-hHHHHHHHH
Confidence 854 355555543
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.15 Score=69.15 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHHhcCC--CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHH
Q 000129 1332 YEALYQGF--KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1332 ~~~l~~gf--~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+..+|..+ ..+|+-|.+|+. .+.++++|.|..|||||.+..--+...+.... ... ++++++.++..|.++.+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~--~IL~ltft~~AA~em~e 259 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPE--QILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHH--HeEEEeccHHHHHHHHH
Confidence 44555432 479999999886 34567899999999999887555444443321 222 89999999999999998
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhh
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRR 1455 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~ 1455 (2114)
++..+++ ...|-|+|--.|. .+++.
T Consensus 260 RL~~~lg----------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 260 RIRERLG----------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred HHHHhcC----------------------CCCcEEEeHHHHHHHHHHH
Confidence 8875542 0247788877764 34554
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.42 Score=57.79 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=29.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
.+++.|++|+|||..+ .++.+.+... +. .++|+ +..+++..+..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~--~~--~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK--GV--PVIFV-NFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc--CC--eEEEE-EHHHHHHHHHH
Confidence 3999999999999887 4677777662 22 55554 44555554433
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.49 Score=58.69 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=63.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHHhhccCCcEEEEEeCCCc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP--~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2114)
.-++++||+|+|||.+..-.+. .+... +.+++++.. .|+-+.++.+.+... +|+.+... ...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~~--~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIKH--KYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceecc--cCC
Confidence 3478999999999986544332 33322 235666653 345555555554443 35544321 111
Q ss_pred cChhhhccceEEEcCHhH--HHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 590 LTRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 590 ~~~~~~~~~~IiV~TPek--~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
. .|.. ++.+... .....++|+||.+++++... .++..+....+...+...++.++
T Consensus 205 ~-------------dp~~v~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 205 A-------------DPAAVAYDAIEHA-----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred C-------------CHHHHHHHHHHHH-----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeec
Confidence 1 1111 1222211 11346899999999876321 12222222233345667788899
Q ss_pred cccCC
Q 000129 668 ATLPN 672 (2114)
Q Consensus 668 ATlpn 672 (2114)
||..+
T Consensus 262 a~~g~ 266 (336)
T PRK14974 262 ALAGN 266 (336)
T ss_pred cccch
Confidence 98754
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.2 Score=59.95 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+..+.|+++.||+|+|||..+ .||.+.+.. .| .-++.+++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLA-IAIGNELLK---AG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHH-HHHHHHHHH---cC--CeEEEEEHHHHHHHHHHHHh
Confidence 456789999999999999887 455555554 34 55777888888888776555
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.092 Score=71.77 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
.+|+-|.+|+.. ...+++|.|..|||||.+...-+...+... -+.. ++++|+.|+..|.++..++.+.++..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~~~-- 74 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLGRK-- 74 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhCcc--
Confidence 489999999864 356699999999999998877666666432 2233 89999999999999988887554321
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
....+-|+|...|. .++++......+ .-++-|+|+.+
T Consensus 75 -----------------~~~~v~i~TfHS~~~~iLr~~~~~~g~-~~~~~i~d~~~ 112 (672)
T PRK10919 75 -----------------EARGLMISTFHTLGLDIIKREYAALGM-KSNFSLFDDTD 112 (672)
T ss_pred -----------------cccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeeCCHHH
Confidence 01247788887764 345442111111 12345667665
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.13 Score=63.52 Aligned_cols=61 Identities=25% Similarity=0.240 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
...+++.|.+.+..+...+.|++|+|+||||||... -+++..+....+.. ++++|-.+.||
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~--rivtIEd~~El 190 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTE--RVFIIEDTGEI 190 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCc--eEEEEcCCCcc
Confidence 345788999999988888999999999999999654 55665543222333 88888888876
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.17 Score=60.82 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=63.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
.|++++|+||-|||.+.. +....|....+.-...-+-+++-+|..+=....+..+-..+ |..... .+
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~~--~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYRP--RD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccCC--CC----
Confidence 489999999999998642 22223322111101112345555777776666666554433 221110 00
Q ss_pred hhhhccceEEEcCHhHH----HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEE
Q 000129 592 RQQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2114)
Q Consensus 592 ~~~~~~~~IiV~TPek~----d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~l 666 (2114)
+..+. ..+.+.. .++++||||+|.+..+....-..++.-+..... .-.+.+|++
T Consensus 129 ------------~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N--eL~ipiV~v 186 (302)
T PF05621_consen 129 ------------RVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN--ELQIPIVGV 186 (302)
T ss_pred ------------CHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhh--ccCCCeEEe
Confidence 11111 1233332 479999999999876554444555554433322 335566655
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.027 Score=62.73 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=56.6
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh
Q 000129 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2114)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2114)
++.|+-|-|||.+.-+++...+..+ ..++++.+|..+-++..++.+...+..+|.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~----------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG----------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc----------CceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 5789999999988766654443322 247999999999888888777665555544431100000000001
Q ss_pred hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChH
Q 000129 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (2114)
Q Consensus 595 ~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~ 674 (2114)
.....|-+..|+. +... -...+++|||||=.+. -+.+ .++ -.....+.||.|+..||
T Consensus 71 ~~~~~i~f~~Pd~---l~~~------~~~~DlliVDEAAaIp---~p~L----~~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDE---LLAE------KPQADLLIVDEAAAIP---LPLL----KQL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHH---HCCT----------SCEEECTGGGS----HHHH----HHH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHH---HHhC------cCCCCEEEEechhcCC---HHHH----HHH-------HhhCCEEEEEeeccccc
Confidence 1245677777774 2211 1234899999998764 1122 222 22344578889988776
Q ss_pred HHH
Q 000129 675 DVA 677 (2114)
Q Consensus 675 dva 677 (2114)
--.
T Consensus 128 GtG 130 (177)
T PF05127_consen 128 GTG 130 (177)
T ss_dssp BB-
T ss_pred cCC
Confidence 543
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.46 Score=58.02 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2114)
-++++.||+|+|||.+|-...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999986543
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.52 Score=55.94 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1342 FNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il~--~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.|.....++..+.. +..+++++||+|+|||..+. ++.+.+.. .+. +++|+.-
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~-a~~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH-AACAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH-HHHHHHHh--CCC--eEEEEEH
Confidence 34444445554432 33579999999999997764 34444433 122 6677644
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.33 Score=57.70 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.+..++|.||+|||||+.+...+.+.+.. +. +++|++ +.+-..++.+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs-~ee~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVA-LEEHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEE-eeCCHHHHHHHHH
Confidence 36779999999999999887777776644 33 788887 4455566666554
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.081 Score=56.32 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
..+++++||+|+|||..+...+.. +... ...++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~~----------~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGPP----------GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCCC----------CCCEEEECCEEccccC
Confidence 356999999999999876543322 2111 1247778777665433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.13 Score=71.15 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+.-+|++|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999863 3457999999999999987766666654321 12347999999999999999999886
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCC-CcccccccEEEEeccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (2114)
++. . ...+.|+|-..| ..+.|.... ..+-. ++-|+|+.+
T Consensus 78 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 118 (721)
T PRK11773 78 LGT----------S---------QGGMWVGTFHGLAHRLLRAHWQDANLPQ--DFQILDSDD 118 (721)
T ss_pred hcc----------C---------CCCCEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 531 0 124678998886 334443211 11111 245777765
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.2 Score=60.71 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
|..+++-|...+..+.....|+||+|.||||||+.. -++. .+.. +.. |+|+|--|.||-
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~-~~i~--~~e--RvItiEDtaELq 213 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALS-GFID--SDE--RVITIEDTAELQ 213 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHH-hcCC--Ccc--cEEEEeehhhhc
Confidence 889999999999999998999999999999999753 2222 2211 233 899999988883
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.31 Score=62.69 Aligned_cols=137 Identities=13% Similarity=0.226 Sum_probs=82.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH-HHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc-
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA-LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE- 1437 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~-La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~- 1437 (2114)
.++.|..|||||.+..+.++..+....++. +++|+-|+.. |-..++..+...+... |+....-..+.+.......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 678899999999998888887777631334 8999999977 7777788887655543 4332111111211111112
Q ss_pred CCcEEEECh-hhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh
Q 000129 1438 KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2114)
Q Consensus 1438 ~~~IIV~TP-e~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~ 1514 (2114)
...|++..- +....+ .....+.++.+|||..+.. ..++.++.|++. +...+.|.+|.++...
T Consensus 81 g~~i~f~g~~d~~~~i-------k~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 81 GKKFIFKGLNDKPNKL-------KSGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPESP 143 (396)
T ss_pred CeEEEeecccCChhHh-------hCcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCCC
Confidence 234666553 222211 1234479999999998842 367777777543 1122247778877653
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.86 Score=58.69 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh-hhccCCCceEEEEE-c-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH-QKASETGVMRAVYI-A-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l-~~~~~~~~~k~l~I-~-Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+..+++.||||+|||+...-.+.... .. .+. ++.+| + |.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCC--eEEEEECCccHHHHHHHHHHHHHHh----CCceE----------
Confidence 45789999999999977643333222 12 122 44433 2 44555555566665432 33221
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc-CCCceEEEEcccCC
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV-ENKIRIVALSTSLA 1512 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~-~~~~riV~lSATl~ 1512 (2114)
.+.+|..+...++. +.+.++||||-+-....+. ..+..+..+.... .....++.+|||..
T Consensus 283 --------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 283 --------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-----RLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred --------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-----HHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 12344444444443 3357999999986543221 1233333333311 22345778999874
Q ss_pred ChhHHHH
Q 000129 1513 NAKDLGE 1519 (2114)
Q Consensus 1513 n~~dla~ 1519 (2114)
..++.+
T Consensus 344 -~~~l~~ 349 (424)
T PRK05703 344 -YEDLKD 349 (424)
T ss_pred -HHHHHH
Confidence 444443
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.41 Score=56.75 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=23.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
+.+++.||+|+|||..+. ++...+.+ .+. +++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH--cCC--cEEEEe
Confidence 459999999999997663 44444443 122 677764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.11 Score=59.15 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=32.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
++|.||+|+|||..++..+...+..+ .+++|++.. +-..++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-----------~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-----------EPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-----------CcEEEEECC-CCHHHHHHHHHH
Confidence 78999999999998877777666432 268888653 445555555544
|
A related protein is found in archaea. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.13 Score=71.18 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+.-+|++++.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999863 3457999999999999997766666664321 12347999999999999999999886
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCC-CcccccccEEEEeccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (2114)
++. + ...+.|+|-..| ..+.|.... ..+.. .+-|+|+.+
T Consensus 73 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 113 (715)
T TIGR01075 73 LGT----------S---------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDD 113 (715)
T ss_pred hcc----------c---------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 531 0 124678998886 334443211 11111 245677765
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.4 Score=52.81 Aligned_cols=40 Identities=35% Similarity=0.494 Sum_probs=26.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
++|.||+|+|||..+...+.. +.. .++ .++|+........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~-~~~--~~~--~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN-IAT--KGG--KVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH-HHh--cCC--EEEEEECCcchHH
Confidence 689999999999877444333 322 234 7888776655433
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.2 Score=66.76 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=102.4
Q ss_pred CCCCHHHHHHHHHHHcCC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH-HHHHHhcCC
Q 000129 1340 KHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR-DWEIKFGQG 1417 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~-~~~~~f~~~ 1417 (2114)
...+|+|.+..+.+-... +.|+++.++-+|||.+.+..+...+.. . .+ .++|+.||..+|....+ ++.-.+...
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~-P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-D-PG--PMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-C-CC--CEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999999886533 569999999999999765555443333 2 33 78999999999998763 343333221
Q ss_pred CCcE--EEE---EcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC---CCCchHHHHHH
Q 000129 1418 LGMR--VVE---LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVS 1489 (2114)
Q Consensus 1418 ~g~~--v~~---l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~---~~g~~le~i~s 1489 (2114)
..++ +.. -.++.+...+.+..+.+.++....-. ...-..++++++||++.... ..|..++....
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~--------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPS--------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCc--------ccccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 1111 100 11222233445555566665432211 11123578999999998843 34778888888
Q ss_pred HHHHHHhhcCCCceEEEEcc-cCCChhHHHHHhcCCCCceee
Q 000129 1490 RMRYIASQVENKIRIVALST-SLANAKDLGEWIGATSHGLFN 1530 (2114)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSA-Tl~n~~dla~wl~~~~~~~~~ 1530 (2114)
|.+.. ....+++..|. |......+...........+.
T Consensus 163 R~~tf----~~~~K~~~~STPt~~~~~~I~~~~~~sdqr~~~ 200 (557)
T PF05876_consen 163 RTKTF----GSNRKILRISTPTIEGTSRIERLYEESDQRRYY 200 (557)
T ss_pred HHhhh----ccCcEEEEeCCCCCCCCCHHHHHHHhCCceEEE
Confidence 87654 23445555554 333234555544444433333
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.43 Score=57.71 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=45.3
Q ss_pred ccCCCChhhHh-hcCCCCCCCHHHHHHHHHHH---c-----CCCc--EEEEccCCCchHHHHHHHHHHHHHhccCCCCCC
Q 000129 478 KISEMPEWAQP-AFKGMTQLNRVQSRVYKSAL---S-----SADN--ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546 (2114)
Q Consensus 478 ~i~~lp~~~~~-~f~g~~~l~~iQ~~~i~~~l---~-----~~~n--vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~ 546 (2114)
..+.+|+.+.. .|.+|. .++-|..++..+. . ...+ ++++||+|+|||..+. +|.+.+...
T Consensus 71 ~~s~i~~~~~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~~------- 141 (268)
T PRK08116 71 SNSLLDEKFRNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIEK------- 141 (268)
T ss_pred HhcCCCHHHHhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHHc-------
Confidence 33445544443 355565 4666666655432 1 1234 9999999999998775 466665542
Q ss_pred CCCCcEEEEEcccHHHHHHHHHHH
Q 000129 547 NHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 547 ~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
+..++|+ +...|..++...+
T Consensus 142 ---~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 142 ---GVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred ---CCeEEEE-EHHHHHHHHHHHH
Confidence 1245554 4555555544433
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.5 Score=57.82 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC-------CcEEEEEcCCc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-------GMRVVELTGET 1429 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~-------g~~v~~l~G~~ 1429 (2114)
..-.++.+|=|.|||.+..+.+...+.. .+ .+++|.+|...-+.+++++....+.... +-.+....|+.
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f--~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~ 262 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISF--LE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTD 262 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHh--cC--CeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCe
Confidence 3447788999999998887666644432 22 4999999999999999998887665220 11222222321
Q ss_pred c-cch---hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1430 A-MDL---KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1430 ~-~~~---~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
. ... ... ..+.|.+++-.. ....-.+++++|+|||+.+.. +.++.++. ...+ .+.+
T Consensus 263 E~I~f~~p~gak~G~sti~F~Ars~---------~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP----~l~~--~~~k 324 (752)
T PHA03333 263 ENLEYISDPAAKEGKTTAHFLASSP---------NAARGQNPDLVIVDEAAFVNP---GALLSVLP----LMAV--KGTK 324 (752)
T ss_pred eEEEEecCcccccCcceeEEecccC---------CCcCCCCCCEEEEECcccCCH---HHHHHHHH----HHcc--CCCc
Confidence 1 000 000 113344433111 111113578999999998864 23333333 2222 4677
Q ss_pred EEEEcccCCChhHHHHHhcC
Q 000129 1504 IVALSTSLANAKDLGEWIGA 1523 (2114)
Q Consensus 1504 iV~lSATl~n~~dla~wl~~ 1523 (2114)
++.+|.+- .+...-.+++.
T Consensus 325 ~IiISS~~-~~~s~tS~L~n 343 (752)
T PHA03333 325 QIHISSPV-DADSWISRVGE 343 (752)
T ss_pred eEEEeCCC-CcchHHHHhhh
Confidence 88888875 34444444443
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.95 Score=59.83 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.++|+|...+..+...+- .++..+=..|||.+....++..... .++. .+++++|++.-|..+++.++..+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588999999988755444 5688888999998876444433332 2333 899999999999999988875444
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.58 Score=55.21 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHH
Q 000129 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l 530 (2114)
+.....++..+.. ...+++++||+|+|||..+..
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4445555555433 345799999999999976643
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.34 Score=53.39 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=26.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
++|+||+|+|||..+...+...... +..++|+.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-----------GGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-----------CCEEEEEECCcchH
Confidence 6899999999999776554444321 23678877655543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.4 Score=62.70 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=29.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
..+++.||+|+|||..+ .++.+.+....++. +++|+. ...+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~--~v~yi~-~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNA--KVVYVT-SEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCC--eEEEEE-HHHHHHHH
Confidence 45899999999999876 45555555522233 677774 34555443
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.16 Score=64.31 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=79.4
Q ss_pred EecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh------c
Q 000129 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL------L 1436 (2114)
Q Consensus 1363 ~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~------l 1436 (2114)
...||||||++..-.||....++. . .-++.|..-.....+...|........=.+-.+..+|.....+. .
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy--r--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY--R--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch--h--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 468999999998888887776632 2 56777776666655544332111100000001112222222111 1
Q ss_pred cC-CcEEEEChhhHHHHHhhhcccc----ccccee-EEEecccccccCCC----------CchHHHHHHHHHHHHhhcCC
Q 000129 1437 EK-GQIIISTPEKWDALSRRWKQRK----YVQQVS-LFIIDELHLIGGQG----------GPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1437 ~~-~~IIV~TPe~l~~l~r~~~~~~----~l~~v~-liIiDEaH~l~~~~----------g~~le~i~srl~~i~~~~~~ 1500 (2114)
.. -.|.++|.+.+...+.+-+... .+.+.. +++-||+|++.... -..||..+ .....+ .+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v---~la~~~-nk 154 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV---KLALEQ-NK 154 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH---HHHHhc-CC
Confidence 12 2799999999866554433221 344444 45789999997531 12233322 111222 45
Q ss_pred CceEEEEcccCCChhHHHH
Q 000129 1501 KIRIVALSTSLANAKDLGE 1519 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~dla~ 1519 (2114)
+--++.+|||++...++.+
T Consensus 155 d~~~lef~at~~k~k~v~~ 173 (812)
T COG3421 155 DNLLLEFSATIPKEKSVED 173 (812)
T ss_pred CceeehhhhcCCccccHHH
Confidence 5667789999986555544
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.18 Score=69.50 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.||+-|.+++.. ...+++|.|..|||||.+..--+.+.+..... ...++++|+.|+..+.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998863 34579999999999999988777777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
+.. ....+-|+|-..|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 310 1245788998886
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.071 Score=61.00 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++||+|+|||..++-.+.+....+ .+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-----------~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-----------MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-----------CeEEEEec
Confidence 68899999999988776665554332 36777766
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.5 Score=57.00 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
...++++.||||+|||..+ .+|.+.+... .+ ..++|+. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~--~g-~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK--KG-VPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh--cC-ceEEEEE-HHHHHHH
Confidence 3568999999999999876 4666666541 12 2666655 3444443
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.19 Score=57.19 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=32.8
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
.++|.||+|+|||..+...+...+.. +. +++|+.. .+-..++.+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g~--~v~~~s~-e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---GE--PGLYVTL-EESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---CC--cEEEEEC-CCCHHHHHHHHH
Confidence 37899999999999887666665543 33 7788754 455566666554
|
A related protein is found in archaea. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.65 Score=54.79 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHc---CCCcEEEEecCCCchHHHHH
Q 000129 1344 PIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1344 ~iQ~q~~~~il~---~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.....++..+.. ...+++++||+|+|||..+.
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 334444444432 45679999999999997763
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.65 Score=54.91 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=23.0
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
..+++.||+|+|||..+ .++.+.+... +. +++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~--~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLN--QR--TAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--CC--CeEEeeH
Confidence 34789999999999776 3444444431 22 5666543
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.4 Score=62.59 Aligned_cols=144 Identities=25% Similarity=0.260 Sum_probs=80.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcccc-
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAMD- 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~-~l~G~~~~~- 1432 (2114)
..++-++|.|+||.|||..++-.+.+.... .+. .++|+ ....-..|+..++...++.. ... ...|.....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~--~v~~f-SlEms~~~l~~R~l~~~~~v---~~~~i~~~~l~~~e 272 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK--TDK--NVAIF-SLEMGAESLVMRMLCAEGNI---DAQRLRTGQLTDDD 272 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCC--eEEEE-eCCCCHHHHHHHHHHHhcCC---CHHHhhcCCCCHHH
Confidence 456779999999999998776555443333 122 45554 44445566666664344322 211 112332221
Q ss_pred -------hhhccCCcEEEE-----ChhhHHHHHhhhcccccccceeEEEecccccccCCC------CchHHHHHHHHHHH
Q 000129 1433 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG------GPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 -------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~------g~~le~i~srl~~i 1494 (2114)
...+.+..+.|. |++.+....+++.... .++++||||=.|.+.... ...+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~--~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~l 350 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH--GGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKAL 350 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 123344456553 4455555555543221 268999999999885321 12244566677777
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
...+ ++.+|++|-.
T Consensus 351 Ake~--~i~vi~lsQl 364 (448)
T PRK05748 351 AKEL--KVPVIALSQL 364 (448)
T ss_pred HHHh--CCeEEEeccc
Confidence 6643 6778888765
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.33 Score=64.16 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=21.8
Q ss_pred HHHHHHHHcCC---CcEEEEccCCCchHHHHHHH
Q 000129 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 501 ~~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~ 531 (2114)
.+.+..++.++ ..+|++||.|+|||.+|.+.
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34455555544 35699999999999987544
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.28 Score=59.40 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHH---c-CCCcEEEEecCCCchHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLY---N-TDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il---~-~~~nvli~ApTGSGKTl~~~l 1376 (2114)
+-..++.+.+++..+- . +...+++.||+|+|||+.+..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3356777777777653 3 344789999999999987743
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.076 Score=54.14 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCCh
Q 000129 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (2114)
Q Consensus 975 al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~ 1046 (2114)
|++.|...|+|+.+ ..+|++|+.++.++++|.-.+++..+...+|. .+++.|.|.-++ .++.++.
T Consensus 2 A~~~L~~Lgald~~-----~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~-~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 2 ALELLKSLGALDEN-----GNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCL-DEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp HHHHHHHTTSB-TT-----S-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-H-HHHHHHHHHHTS-S--B---
T ss_pred HHHHHHHCCCCCCC-----CCcCHHHHHHHHCCCchHhHhHhhhccccccH-HHHHHHHHHHcC-CCcccCc
Confidence 67889999999633 38999999999999999999999988777774 566666666666 6676664
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.66 Score=54.57 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.7
Q ss_pred CCCcEEEEecCCCchHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l 1376 (2114)
...++++.||+|+|||.++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999988744
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.43 Score=56.15 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~i 532 (2114)
...+++++||+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34579999999999998875433
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.22 Score=68.96 Aligned_cols=109 Identities=22% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
..+||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+-|+..|.++.+++.+.++..
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~- 81 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS- 81 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC-
Confidence 4699999999874 356799999999999988766655555431 1233 89999999999999988887544310
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHH-HHhhhcccccccceeEEEecccc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~-l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
...+.|+|-..|.. ++|.......+. -.+-|+|+.+
T Consensus 82 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 -------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred -------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 12467888877643 455422111111 1244677765
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.2 Score=52.26 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
|..=..+...+....+ .++++||+|+|||-. +.++.+.+.... ++.+++|+... +...+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4433344444444322 489999999999974 455666555431 23478887543 444444333322
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
...+. +.. .+...++++||.+|.+.+. +..+..+-.+..
T Consensus 86 ------------------------------~~~~~---~~~------~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ------------------------------GEIEE---FKD------RLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ------------------------------TSHHH---HHH------HHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ------------------------------ccchh---hhh------hhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 01121 111 2335799999999998642 222223333333
Q ss_pred HHhhccccccEEEEccccCC
Q 000129 653 QIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn 672 (2114)
... ..+.++|+.|...|.
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 222 235577777767664
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.56 Score=55.62 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.+++++||+|+|||-.+ .++.+.+.. .+. +++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~--~~~--~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ--RGE--PAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh--CCC--cEEEeeH
Confidence 46899999999999774 455554443 123 6777653
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.5 Score=58.66 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
...++++.||||+|||..+ .+|.+.+.. .+. .++|+ +..+|..+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--~g~--~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--RGK--SVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--CCC--eEEEE-EHHHHHHHHH
Confidence 4578999999999999876 456665554 122 56664 4455655443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.86 Score=55.33 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=71.8
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE---cCCccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL---TGETAM 1431 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l---~G~~~~ 1431 (2114)
..+..++|.||||+|||..+...+.+.... .+. +++|+.- ..-..++..++...+. |..+... .+....
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~--~vl~iS~-E~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~ 99 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ--HGV--RVGTISL-EEPVVRTARRLLGQYA---GKRLHLPDTVFIYTLE 99 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCc--eEEEEEc-ccCHHHHHHHHHHHHh---CCCcccCCccccccHH
Confidence 456779999999999998775555444333 122 7777753 2234455555543332 2221110 010000
Q ss_pred c----hhhcc-CCcEEEE------ChhhHHHHHhhhcccccccceeEEEecccccccCCC---C---chHHHHHHHHHHH
Q 000129 1432 D----LKLLE-KGQIIIS------TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG---G---PVLEVIVSRMRYI 1494 (2114)
Q Consensus 1432 ~----~~~l~-~~~IIV~------TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~---g---~~le~i~srl~~i 1494 (2114)
. ...+. ...+.+- |++.+...++... .-.++++||||.++.+.... . ..+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~---~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~l 176 (271)
T cd01122 100 EFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA---VSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGF 176 (271)
T ss_pred HHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH---hcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHH
Confidence 0 01111 1223222 3344444443321 12368999999999875432 1 1234555666666
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
+.. .++-++++|-+
T Consensus 177 a~~--~~vtvll~sq~ 190 (271)
T cd01122 177 ATE--HGIHITLVSHL 190 (271)
T ss_pred HHH--hCCEEEEEecc
Confidence 554 35666666643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.8 Score=58.23 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
.+++|+||+|+|||.++. .+++.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 579999999999998764 3444443
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.24 Score=52.59 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.4
Q ss_pred EEEEecCCCchHHHHHH
Q 000129 1360 VLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l 1376 (2114)
+++.||+|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999987643
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.25 Score=59.89 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=48.1
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 490 f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
|-.|..+++-|.+.+..+.....|+|+|+-||||||+. ++.+...... .. ++|.+--+.+|
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~~------~e-RvItiEDtaEL 212 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFIDS------DE-RVITIEDTAEL 212 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCCC------cc-cEEEEeehhhh
Confidence 34688999999999999999999999999999999964 4555444322 12 88888888776
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.52 Score=56.92 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.1
Q ss_pred CcEEEEecCCCchHHHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFA 1377 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~ 1377 (2114)
.++++.||+|+|||.++...
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999988544
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.71 Score=60.00 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=22.2
Q ss_pred HHHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000129 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 502 ~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (2114)
+.+..++..+ ..+|++||.|+|||.+|.+..
T Consensus 23 ~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 23 RILRNAFTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred HHHHHHHHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 3444555544 369999999999999886543
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.91 Score=58.44 Aligned_cols=135 Identities=14% Similarity=0.209 Sum_probs=82.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH-HHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra-La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
.+++|..|||||.++.+.++..+.... .+.+++++.|+.. |..-++..+...+..+|+....-.....+.-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEE
Confidence 678999999999999888887776641 1347999999887 7777788888777766654222222221111
Q ss_pred hhhc-cceEEEcCH-hHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 593 QQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 593 ~~~~-~~~IiV~TP-ek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.... +..|++..- +..+.+.. ...+.++.+|||..+.. ..++.++.|+. ... ..+.+.+|.|.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik~-------~~~~~~~~idEa~~~~~---~~~~~l~~rlr----~~~-~~~~i~~t~NP 140 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLKS-------GAGIAIIWFEEASQLTF---EDIKELIPRLR----ETG-GKKFIIFSSNP 140 (396)
T ss_pred EecCCCeEEEeecccCChhHhhC-------cceeeeehhhhhhhcCH---HHHHHHHHHhh----ccC-CccEEEEEcCc
Confidence 1112 345666543 33222221 12368999999998753 36777776642 111 22247778884
Q ss_pred C
Q 000129 671 P 671 (2114)
Q Consensus 671 p 671 (2114)
+
T Consensus 141 ~ 141 (396)
T TIGR01547 141 E 141 (396)
T ss_pred C
Confidence 4
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.81 Score=53.91 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=69.4
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+..++-++|.|++|+|||+.+...+.+.... +. +++|+.--- -..|+.+++. .++ +....+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge--~vlyfSlEe-s~~~i~~R~~-s~g----~d~~~~-------- 121 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GR--TGVFFTLEY-TEQDVRDRLR-ALG----ADRAQF-------- 121 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEEeC-CHHHHHHHHH-HcC----CChHHh--------
Confidence 3456779999999999999887766665543 33 778875433 3466666665 332 110000
Q ss_pred hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
.....+....+...+.+.++... -.+.++||||=+..+... ..+.+..++..++.+.+. .++-+|++|-.
T Consensus 122 --~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~--~gitvIl~sQl 192 (237)
T PRK05973 122 --ADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE--RGLIIVFISQI 192 (237)
T ss_pred --ccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--CCCeEEEEecC
Confidence 00000111111112222333221 124689999999977432 233444445556655543 46666766543
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.4 Score=54.47 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHc---CCC---cEEEEccCCCchHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALS---SAD---NILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~---~~~---nvlv~APTGsGKT~~a~l~ 531 (2114)
..++|+|..++..+.. .++ .+|++||.|.||+..+...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l 46 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL 46 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 4678899888876543 322 4899999999999877543
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.22 Score=61.41 Aligned_cols=60 Identities=20% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
..+++.|.+.+..++..+.|++++||||||||.. +-+++..+.... ...++++|-.+.+|
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 3477899999999999999999999999999954 345555432111 12378888777766
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.38 Score=52.10 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=55.5
Q ss_pred EecCCCCHHHHHHHHHHHhCCC-ceEEEechHhhhhcCCCce---EEEEecceeccCCCC-----------------ccc
Q 000129 799 IHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG-----------------AWT 857 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~-i~VLVaT~tla~GVdlP~v---~vVI~~~~~yd~~~g-----------------~~~ 857 (2114)
++.-+....+...+++.|++.. ..||++|..++.|||+|+. .|||. ..||-++.. .|.
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~-glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIID-GLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEE-ecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 3444555556788899998654 3799999889999999985 34454 455532221 111
Q ss_pred c----CCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 858 E----LSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 858 ~----~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
. .....+.|.+||+-|... ..|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcC-ceEEEEEE
Confidence 1 235678899999999654 45655444
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.54 Score=56.04 Aligned_cols=140 Identities=22% Similarity=0.285 Sum_probs=73.1
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc---cHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP---LEALAKERYRDWEIKFGQGLGMRVV-ELTGETA 1430 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P---tr~La~q~~~~~~~~f~~~~g~~v~-~l~G~~~ 1430 (2114)
..++-++|+|+||+|||..+...+.+..... +. +++|+.. ..+++..... ... ++... ...|...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~--~vly~s~E~~~~~~~~r~~~----~~~---~~~~~~~~~~~~~ 79 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GK--PVLFFSLEMSKEQLLQRLLA----SES---GISLSKLRTGSLS 79 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC--ceEEEeCCCCHHHHHHHHHH----Hhc---CCCHHHHhcCCCC
Confidence 3467799999999999988766666555441 22 7788763 3333333221 111 11111 0111111
Q ss_pred c-c-------hhhccCCcEEE-----EChhhHHHHHhhhcccccccceeEEEecccccccCCC-----CchHHHHHHHHH
Q 000129 1431 M-D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-----GPVLEVIVSRMR 1492 (2114)
Q Consensus 1431 ~-~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-----g~~le~i~srl~ 1492 (2114)
. . ...+....+.+ .|++.+...++..... .++++||||=++.+.... ...+..++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~ 156 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLK 156 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHH
Confidence 1 0 11122334444 2445554444442211 278999999999774321 123445667777
Q ss_pred HHHhhcCCCceEEEEccc
Q 000129 1493 YIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSAT 1510 (2114)
.++.++ ++-++++|-.
T Consensus 157 ~la~~~--~~~ii~~~q~ 172 (242)
T cd00984 157 LLAKEL--NVPVIALSQL 172 (242)
T ss_pred HHHHHh--CCeEEEeccc
Confidence 666543 5666776643
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.98 Score=57.31 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=25.1
Q ss_pred ccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
.....+++||||+|.+.. ...+. +++.++..+..+++|+.+
T Consensus 116 ~~~~~kviIIDEa~~l~~---~a~na----LLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSR---HSFNA----LLKTLEEPPQHIKFILAT 156 (363)
T ss_pred ccCCceEEEEEChhhcCH---HHHHH----HHHHHhcCCCCeEEEEEc
Confidence 345678999999999853 12232 344445555566666654
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.86 Score=60.26 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=26.2
Q ss_pred cccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
....+++||||+|+|.. ... ..+++.++....++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~---~Aa----NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN---HAF----NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCH---HHH----HHHHHhhccCCCCceEEEEe
Confidence 45678999999999863 122 33455556655667666654
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.25 Score=68.44 Aligned_cols=109 Identities=19% Similarity=0.123 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhc-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~-~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
..|||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+.|+..|.++.+++.+.++..
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 4699999999864 356799999999999988766655555431 1223 89999999999999988887544310
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
...+.|+|-..|. .++|+......+. -.+-|+|+.+
T Consensus 77 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 113 (715)
T TIGR01075 77 -------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDD 113 (715)
T ss_pred -------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 1246788888764 3555422111111 1245677765
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.62 Score=56.86 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.0
Q ss_pred cEEEEccCCCchHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2114)
++++.||+|+|||.+|..
T Consensus 60 ~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALR 77 (284)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 699999999999998844
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.94 Score=58.26 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
..+++|.||+|+|||.+.- .+++.+.... ....++|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l~~~~--~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEELEEIA--VKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhc--CCcEEEEEE
Confidence 3679999999999998763 4445554421 123667763
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.26 Score=60.64 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
.+++.|.+.+..++..+.|+|++||||||||... -+++..+.... ...+++.+-...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 4788999999999999999999999999999864 44555543211 12377877777776
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.56 Score=62.61 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred HHHHHHcCCC---cEEEEccCCCchHHHHHHHH
Q 000129 503 VYKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 503 ~i~~~l~~~~---nvlv~APTGsGKT~~a~l~i 532 (2114)
.+..++..++ .+|++||.|+|||.++....
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 3444455443 58999999999999876543
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=92.34 E-value=5.6 Score=60.63 Aligned_cols=213 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.|++-|.+++..++.+ +.-.+|.++.|+|||.+ +-+++..+... +.+++.++|+-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~----------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ----------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc----------CCeEEEEeCCHHHHHHHHHHhcch
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCC----------cccccccEEEEecccccccCCchhH
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR----------TYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~----------~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.. |-.+|.......... ..+..-++|||||+-++. ...+
T Consensus 498 A~----------------------------Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~---~~~~ 546 (1960)
T TIGR02760 498 AS----------------------------TFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLS---NNEL 546 (1960)
T ss_pred hh----------------------------hHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCC---HHHH
Q ss_pred HHHHHHHHHHHhhccccccEEEEccc--cCC--hHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHh
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSAT--LPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSAT--lpn--~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (2114)
..++... ...+.|+|++-=+ +|. +..+-.-+..........-...-...++ .+.......+...+
T Consensus 547 ~~Ll~~a------~~~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v-----~i~~~~~~~r~~~i 615 (1960)
T TIGR02760 547 LKLIDKA------EQHNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV-----EISEAVDKLRVDYI 615 (1960)
T ss_pred HHHHHHH------hhcCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccCcce-----eeeccCchHHHHHH
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000129 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2114)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l 763 (2114)
.+....... ....++|+..+.++...+...++........+
T Consensus 616 a~~y~~L~~---~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L 656 (1960)
T TIGR02760 616 ASAWLDLTP---DRQNSQVLATTHREQQDLTQIIRNALKQEGQL 656 (1960)
T ss_pred HHHHHhccc---ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCc
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.54 Score=60.69 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=29.0
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
..+++.||+|+|||..+ .++.+.+....++. +++|+.. ..+..+
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~--~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNA--KVVYVSS-EKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCC--cEEEEEH-HHHHHH
Confidence 35899999999999877 56666665532233 7788753 334333
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.78 Score=57.79 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1347 TQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1347 ~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I-~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
..++..++.+. .|++|-||||+|||.+. ..+++.+....... -++|| +..-.--.|++..+.+.++
T Consensus 30 ~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~~~~~~--~~~yINc~~~~t~~~i~~~i~~~~~-------- 98 (366)
T COG1474 30 ASFLAPALRGERPSNIIIYGPTGTGKTATV-KFVMEELEESSANV--EVVYINCLELRTPYQVLSKILNKLG-------- 98 (366)
T ss_pred HHHHHHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHHhhhccC--ceEEEeeeeCCCHHHHHHHHHHHcC--------
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
.-...-..+-+.+..+... .......-+||+||++.|.+..+ +.+..-++.-... ...+-
T Consensus 99 -------------~~p~~g~~~~~~~~~l~~~---~~~~~~~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~-~~~v~ 158 (366)
T COG1474 99 -------------KVPLTGDSSLEILKRLYDN---LSKKGKTVIVILDEVDALVDKDG---EVLYSLLRAPGEN-KVKVS 158 (366)
T ss_pred -------------CCCCCCCchHHHHHHHHHH---HHhcCCeEEEEEcchhhhccccc---hHHHHHHhhcccc-ceeEE
Q ss_pred EEEEcccC
Q 000129 1504 IVALSTSL 1511 (2114)
Q Consensus 1504 iV~lSATl 1511 (2114)
+|+.+-++
T Consensus 159 vi~i~n~~ 166 (366)
T COG1474 159 IIAVSNDD 166 (366)
T ss_pred EEEEeccH
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2114 | ||||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 0.0 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 0.0 | ||
| 2q0z_X | 339 | Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. | 3e-91 | ||
| 3im1_A | 328 | Structure Of The C-Terminal Sec63 Unit Of Yeast Brr | 3e-53 | ||
| 3hib_A | 318 | Crystal Structure Of The Second Sec63 Domain Of Yea | 5e-50 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 6e-37 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 1e-36 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 1e-34 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 3e-33 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 1e-33 | ||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 3e-17 | ||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 4e-17 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 3e-14 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 5e-13 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 5e-06 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 1e-06 |
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 | Back alignment and structure |
|
| >pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 | Back alignment and structure |
|
| >pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
|
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 715 bits (1848), Expect = 0.0
Identities = 173/770 (22%), Positives = 303/770 (39%), Gaps = 90/770 (11%)
Query: 477 IKISE--MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
+++ E + E + K G+ Q+ KS + N L+ PT +GKT +A + +
Sbjct: 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAM 60
Query: 533 LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
+ ++ K VY+ P+KAL E + ++V +GD
Sbjct: 61 VHRILTQG----------GKAVYIVPLKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKD 109
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
+ + + II+ T EK+D + R ++ + VK+L+ DEIHL+ +RG LE I+A
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHM- 166
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG----I 707
+++GLSAT+ N E++A +L L + +RPV L +
Sbjct: 167 ------LGKAQIIGLSATIGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVT 214
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ RF +L Y+ + K LIFV+ R++ + A + T
Sbjct: 215 WEDGSIDRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTK---- 267
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
E E+ S + + L + G A HHAG+ R +R LVE+ F G ++ +V+T
Sbjct: 268 PEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
TL+ G+N PA VII+ Y+ + +++ QMLGRAGRP+YD GEGII++
Sbjct: 328 PTLSAGINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385
Query: 888 HSELR--YYLSLMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
+ R + + + SQ S L Q+ A I +E +I T+
Sbjct: 386 SDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY- 444
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+ Y L + + L N ++ + LG
Sbjct: 445 --QRKDTYSL---------------EEKIRNILYFLLENEFIEI-SLEDKIRPLSLGIRT 486
Query: 1004 SYYYISHGTISTYNEHLKPTMGDI---ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
+ YI T + + ++ + D + L SL+ + + E L +
Sbjct: 487 AKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFK 546
Query: 1061 -------------IPVKESLEEPSAKINVLLQAYISQLKLEGLS-----LTSDMVFITQS 1102
P E + K ++L A+I+++ + D+ I ++
Sbjct: 547 DRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVET 606
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A L+ +L EI G ++ + L V + PL Q + L
Sbjct: 607 AEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG 666
Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTV 1212
F D+S EL++ +G + + +F + +P T+
Sbjct: 667 F--RSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVKISEKPRKSTL 714
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 523 bits (1348), Expect = e-165
Identities = 152/750 (20%), Positives = 287/750 (38%), Gaps = 105/750 (14%)
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
+ L + + L+ G + F P Q + N L++ PT SGKT+
Sbjct: 3 VDELRVDERIKSTLKER-------GIESFYPPQAEALKSGILEGKNALISIPTASGKTLI 55
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+E A++ + G +AVYI PL+ALA+E++++++ + + +G+RV TG+
Sbjct: 56 AEIAMVH---RILTQG-GKAVYIVPLKALAEEKFQEFQ-DWEK-IGLRVAMATGDYDSKD 109
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
+ L K III+T EK+D+L R +++ V + + DE+HLIG + G LEVI++ M
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
K +I+ LS ++ N ++L EW+ A RPV L + +
Sbjct: 168 -------GKAQIIGLSATIGNPEELAEWLNAE-----LIVSDWRPVKLRRGVFYQGFVTW 215
Query: 1553 E----ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
E R + + + AI + K AL+FV R+ A++L +
Sbjct: 216 EDGSIDRFSSWEELVYDAIRKK----KGALIFVNMRRKAERVALELSKKVKSLLTKPEIR 271
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L E + +N E L +R GV + H GL + ++ +V F G IK V + +
Sbjct: 272 AL--NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPT 329
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
+ G+ A V++ Y P+ ++ QM+G A RP D G+ +I+ +
Sbjct: 330 LSAGINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387
Query: 1729 -RKEYYKKFLRLTQNPNYYNLQGVSHRHLSDH---------------------------- 1759
+E ++ + L + +L
Sbjct: 388 DPREVMNHYIFGKPEKLFSQLS--NESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ 445
Query: 1760 ------LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP 1813
L E + N + L ++ I I + + P + G+ + YI T + F +
Sbjct: 446 RKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEE 505
Query: 1814 KTR---MKGLLEVLASASEYAQLPIRPGEEEVVRRLI--HHQRFSFENP----------K 1858
+ G+ +++ + E E + R F++P +
Sbjct: 506 VVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLER 565
Query: 1859 FTDPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1912
K +L A + G D ++ +A L+ ++ ++ G
Sbjct: 566 KFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE 625
Query: 1913 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 1972
+ + V G+ E L+QLP + A+ ++ D+ + +E
Sbjct: 626 IVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYN---SGFRSIEDISQARPEELL 682
Query: 1973 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQ 2002
++ + +F ++ +
Sbjct: 683 KIEGIGV----KTVEAIFKFLGKNVKISEK 708
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 684 bits (1768), Expect = 0.0
Identities = 184/761 (24%), Positives = 323/761 (42%), Gaps = 116/761 (15%)
Query: 469 PLDPNEKLIKISEM--PEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGK 524
L+ + + I ++ P K G+ +LN Q+ K L + +LL +PTG+GK
Sbjct: 2 GLE--LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGK 59
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584
T +A + I+ L N K +YV P++AL E ++ KV
Sbjct: 60 TLIAEMGIISFLLKNG----------GKAIYVTPLRALTNEKYLTFK-DWELIGFKVAMT 108
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL 643
SGD ++ II+TT EK D + R + + V ++DE+H L+D RGPV+
Sbjct: 109 SGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVV 166
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ES+ R + L+ LSAT+ NY+ +A +L ++RPVPL +
Sbjct: 167 ESVTIRA--------KRRNLLALSATISNYKQIAKWLGAEP------VATNWRPVPLIEG 212
Query: 704 YIGIQVKK----------PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAI 753
I + KK ++ + + + +++ QVL+F +SRK TA I
Sbjct: 213 VIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI 272
Query: 754 RD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809
+ +L+ + L LK+ E + LK L+ G A HHAG+++ R
Sbjct: 273 ANYMNFVSLDENALSEILKQLDDIEEGGS-----DEKELLKSLISKGVAYHHAGLSKALR 327
Query: 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-KGAWTELSPLDIMQML 868
L+E+ F ++V+V+T TLA GVNLPA TVII +N + G + E+ ++ QM
Sbjct: 328 DLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387
Query: 869 GRAGRPQYDSYGEGIIITGHSELR---YYLSLMNQQLPIESQFVSK--LADQLNAEIVLG 923
GRAGRP +D GE I++ E + +++ PIES+ S+ L +
Sbjct: 388 GRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAE 447
Query: 924 TVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNN 983
+ K+ N+ + L +++ A L ++
Sbjct: 448 GNLSEKQLENFAYESLLAKQLVDV-----------------------YFDRAIRWLLEHS 484
Query: 984 LVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELC--RLFSLSEEFKY 1041
+K + F +T+ G+ + YI+ T + L+ EL L + + +
Sbjct: 485 FIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542
Query: 1042 VTVRQDEKMELAKLLDRVPIPV----KESLEEPSAKINVLLQAYISQLKLEGLSLTS--- 1094
V+V ++E+ EL +LL+ + + +E S IN L A I + ++ + +
Sbjct: 543 VSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILS 602
Query: 1095 -------DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQF 1147
D+ + ++ L + + + + + A+K L+ V
Sbjct: 603 KYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRD------------ 650
Query: 1148 NGIPNEILMKLEKKDFAWERY---YDLSPQELGELIRFPKM 1185
GI E+L ++ +R Y+ +ELG+++ P
Sbjct: 651 -GIKEELLELVQISGVGRKRARLLYNNGIKELGDVVMNPDK 690
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 485 bits (1249), Expect = e-151
Identities = 158/740 (21%), Positives = 296/740 (40%), Gaps = 92/740 (12%)
Query: 1317 LDLQPLPVTALRNP--LYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
L+L+ +P+ L+ P + E + +G K NP QT+ + +L+ +PTGSGKT+
Sbjct: 3 LELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLI 62
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+E I+ + G +A+Y+ PL AL E+Y + K + +G +V +G+ D
Sbjct: 63 AEMGIISF---LLKNG-GKAIYVTPLRALTNEKYLTF--KDWELIGFKVAMTSGDYDTDD 116
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
L+ III+T EK D+L R + ++ +V+ F++DELH + GPV+E + R +
Sbjct: 117 AWLKNYDIIITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-- 1550
++ALS +++N K + +W+GA RPVPL + +
Sbjct: 175 RR--------NLLALSATISNYKQIAKWLGA-----EPVATNWRPVPLIEGVIYPERKKK 221
Query: 1551 --------NFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602
N ++ + +KN LVF SRK TA+ + Y +
Sbjct: 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLSKN-GQVLVFRNSRKMAESTALKIANYMNFVS 280
Query: 1603 DQKSAFLLWPAEEVEPFIDNIQE--EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
++A L ++++ + + E+LK+ + GV Y H GL+K ++++ F KI
Sbjct: 281 LDENA-LSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI 339
Query: 1661 KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQ-ENAHTDYPVTDLLQMMGHASRPLLDNSG 1719
KV V + ++ GV L A V++ ++ + + + P+ + QM G A RP D G
Sbjct: 340 KVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIG 399
Query: 1720 KCVILCH---APRKEYYKKFL--------RLTQNPNYYN--LQGVSHRHLSDH------- 1759
+ +++ + + K L +L +Y L +S
Sbjct: 400 ESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFA 459
Query: 1760 ---------LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSS 1810
+ + I L I E + + +N G + YI+ T +
Sbjct: 460 YESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNT-FALTNFGKRVADLYINPFTADIIRKG 518
Query: 1811 LTP--KTRMKGLLEVLASASEYAQLPIRPGE--------EEVVRRLIHHQRFSFENPKFT 1860
L + L +LA + + + E E++ L+ + + +
Sbjct: 519 LEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLY 578
Query: 1861 DPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLA 1914
+K +++ D ++ + L + + A
Sbjct: 579 INALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHA 638
Query: 1915 LLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERREL 1974
++ V G+ E L+Q+ + A+ N I+ + D+V D+ + L
Sbjct: 639 DKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNN---GIKELGDVVMNP-DKVKNL 694
Query: 1975 LQMSDVQ--LLDIARFCNRF 1992
L + + + AR NRF
Sbjct: 695 LGQKLGEKVVQEAARLLNRF 714
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 669 bits (1727), Expect = 0.0
Identities = 166/715 (23%), Positives = 301/715 (42%), Gaps = 90/715 (12%)
Query: 477 IKISEMPEWAQPAF------KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
+K+ E+ E +G+ +L Q+ + S N+LL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEM 59
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
++++ K +YV P++AL E + + + +++ +GD
Sbjct: 60 AMVREAIKGG-----------KSLYVVPLRALAGEKYESFK-KWEKIGLRIGISTGDYES 107
Query: 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVAR 649
+ + + IIVTT EK D + R + + V L++DEIHLL RG LE +V +
Sbjct: 108 RDEHLGDCDIIVTTSEKADSLIRNRAS--WIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
R + +R++GLSAT PN ++A +L + + + +RPVPL + +
Sbjct: 166 MRR----MNKALRVIGLSATAPNVTEIAEWLDADY------YVSDWRPVPLVEGVLCEGT 215
Query: 710 KKPL-QRFQLMNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
+ F + +E++V VA VL+F +R+ KTA + ++
Sbjct: 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI------TAKY 269
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
++ + + + IL+ + S L + + G A HHAG+ G R++VED F G+++V+V+
Sbjct: 270 VENEGLEKAILEE-NEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVA 328
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
T TLA GVNLPA VI++ ++ G + + QM GRAGRP D GE III
Sbjct: 329 TPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385
Query: 887 GHSELRYYLS--LMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
G + + + + I S+ + L + I G + +E ++ T+ +
Sbjct: 386 GKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFK 445
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
+ + + + L+ +V ++ + T LG +
Sbjct: 446 QNEISL--------------------SYELERVVRQLENWGMVV---EAAHLAPTKLGSL 482
Query: 1003 ASYYYISHGTISTYNEHL-KPTMGDIELCRLFSLSEEFKYVTVRQDEK------MELAKL 1055
S YI T +++ L + + DI L + + + +TVR+ + L K
Sbjct: 483 VSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKE 542
Query: 1056 LDRVPIP--VKESLEEPSAKINVLLQAYISQLKLEGLSLT-----SDMVFITQSAGRLLR 1108
L P V+ K + L+ +I + + + D+ I ++A L
Sbjct: 543 LSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSN 602
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163
A+ I + G ++ L++ + + L + I KL
Sbjct: 603 AMNRIAEEVGNTSVSG----LTERIKHGVKEELLELVRIRHIGRVRARKLYNAGI 653
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 524 bits (1352), Expect = e-165
Identities = 156/708 (22%), Positives = 278/708 (39%), Gaps = 96/708 (13%)
Query: 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFA 1377
+ V L+ G + P Q + ++ + N+L+A PT +GKT+ +E A
Sbjct: 9 SISSYAVGILKEE-------GIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMA 60
Query: 1378 ILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
++R K +++Y+ PL ALA E+Y ++ K+ + +G+R+ TG+ + L
Sbjct: 61 MVREAIKGG-----KSLYVVPLRALAGEKYESFK-KW-EKIGLRIGISTGDYESRDEHLG 113
Query: 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIAS 1496
II++T EK D+L R +++ VS ++DE+HL+ + G LE++V++MR +
Sbjct: 114 DCDIIVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171
Query: 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG-VDITNFEAR 1555
+R++ LS + N ++ EW+ A + RPVPL + + F+
Sbjct: 172 ----ALRVIGLSATAPNVTEIAEWLDAD-----YYVSDWRPVPLVEGVLCEGTLELFDGA 222
Query: 1556 MQAMTKPTFTAIVQHAKNE-KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614
+ F +V+ E LVF +R+ TAV L ++ + + E
Sbjct: 223 FSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEE 282
Query: 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVP 1674
+ L +R G + H GL + VV F G IKV V + ++ GV
Sbjct: 283 N-----EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVN 337
Query: 1675 LTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YY 1733
L A V+V +DG V++ QM G A RP +D G+ +I+ +E
Sbjct: 338 LPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 394
Query: 1734 KKFLRLTQNPNYYNLQGVSHRHLSDHL--------------------------------S 1761
K+++ L HL H S
Sbjct: 395 KRYIFGEPERITSKL--GVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLS 452
Query: 1762 ELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT-PKTRMKGL 1820
+E + LE + E L+P+ G + S YI T F L+ + G
Sbjct: 453 YELERVVRQLENWGM--VVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGA 510
Query: 1821 LEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENP-------KFTDPHVKANALLQAH 1873
L ++ + +L +R + V ++ P + VK L+
Sbjct: 511 LHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDW 570
Query: 1874 FSRQQVG------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQG 1927
+ G D ++ +A L AM + G S++ L ++ + G
Sbjct: 571 IEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGL----TERIKHG 626
Query: 1928 MWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELL 1975
+ E L+++ H + A++ G I D+V ++ L+
Sbjct: 627 VKEELLELVRIRHIGRVRARKLYNA-G--IRNAEDIVRH-REKVASLI 670
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 334 bits (857), Expect = e-103
Identities = 183/335 (54%), Positives = 248/335 (74%), Gaps = 7/335 (2%)
Query: 1780 EEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGE 1839
MD++P N GMIA+YYYI+YTTIE FS SL KT+++GL+E++++A+EY +PIR E
Sbjct: 8 HSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHE 67
Query: 1840 EEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQ 1899
+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+L A RL+Q
Sbjct: 68 DNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQ 127
Query: 1900 AMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIET 1959
A VDV+SSNGWLS AL AME++QMVTQ MW +DS L QLPHF + KRC + +E+
Sbjct: 128 ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VES 184
Query: 1960 VFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVL 2019
VFD++EMED+ER LLQ++D Q+ D+ARFCNR+PNI++S+EV D +++R+G + + V L
Sbjct: 185 VFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQL 244
Query: 2020 ERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPA 2079
ER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++VKLDF AP
Sbjct: 245 EREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP- 300
Query: 2080 EAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE 2114
G YTLYFM D+YMGCDQEY F+VDVKEA +
Sbjct: 301 ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETD 335
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 209 bits (532), Expect = 6e-60
Identities = 74/332 (22%), Positives = 142/332 (42%), Gaps = 19/332 (5%)
Query: 984 LVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043
+ +LG IA+YYYI++ TI ++ L L + S + E++ +
Sbjct: 3 HHHHHHSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIP 62
Query: 1044 VRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102
+R E L +L +VP + +P K N+LLQA++S+++L L SD I
Sbjct: 63 IRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSK 121
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A RL++A +++ GW A A+ L++MVT+ MWS + L+Q +E + + K
Sbjct: 122 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG 181
Query: 1163 F-AWERYYDLSPQELGELI-RFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
+ ++ +E L+ + +F +++P + L+ V + +
Sbjct: 182 VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL 241
Query: 1221 PDFLWDDKVHGYV----------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT 1270
+++V G V E +WV++ D ++ + L+++ L+F
Sbjct: 242 VQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFV 298
Query: 1271 VPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
P Y + +SD ++G S
Sbjct: 299 AP--ATGAHNYTLYFMSDAYMGCDQEYKFSVD 328
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 315 bits (807), Expect = 5e-97
Identities = 115/333 (34%), Positives = 212/333 (63%), Gaps = 9/333 (2%)
Query: 1779 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPG 1838
+E +S ++G+IAS+Y +S+ TI+ F SSL+ + +K +L VL++A E+ +P+R G
Sbjct: 3 MEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKG 62
Query: 1839 EEEVVRRLIHHQRFSF-ENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRL 1897
+ ++ +L F E+ K LLQA+FSR ++ + + D +++L L
Sbjct: 63 DRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPL 122
Query: 1898 LQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSI 1957
+ +VD++S+NG+L+ A AM+++QM+ QG+W+ D+ L Q+PHF + ++C+E ++
Sbjct: 123 INVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKE---INV 178
Query: 1958 ETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQV 2017
ETV+D++ +ED+ER E+L ++D QL +A F N +PN+++++ + +S+++ +G + +
Sbjct: 179 ETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITI 238
Query: 2018 VLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFA 2076
L RD+ E V S +YP K E WWLV+G+ +L AIK+V+L ++++ +L+F
Sbjct: 239 QLTRDV--EPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFD 296
Query: 2077 APAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVK 2109
P +GK T++ +CDSY+ D+E +F ++VK
Sbjct: 297 TP-TSGKHNLTIWCVCDSYLDADKELSFEINVK 328
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 4e-52
Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 21/327 (6%)
Query: 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
+ G IAS+Y +S TI ++ L T + + S + EF+ V +R+ ++
Sbjct: 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRA 65
Query: 1051 ELAKLLDRVPIPVKE--SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
L KL R+P+ E S S K+ +LLQAY S+L+L +D+ I + L+
Sbjct: 66 LLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLIN 124
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA-WER 1167
+ +I+ G+ A A++L++M+ + +W V PLRQ N+IL K ++ +
Sbjct: 125 VVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYD 183
Query: 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWD 1226
L +E E++ + FV+ +P + L + + V+ IT D
Sbjct: 184 IMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243
Query: 1227 DKVHG-----------YVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
+ +E +W+++ + + + + L K+ + + L F P
Sbjct: 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--T 299
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
I V D +L + L
Sbjct: 300 SGKHNLTIWCVCDSYLDADKELSFEIN 326
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 1e-38
Identities = 117/634 (18%), Positives = 217/634 (34%), Gaps = 102/634 (16%)
Query: 343 DQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG 402
D + + EE P + + ++ + + EE ++ ++ +
Sbjct: 37 DSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKK 96
Query: 403 RDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHV 462
D + + + A ++ + K + + G +
Sbjct: 97 IKSNKSKTEDKNKKVVVPVLADSFEQEASRE----VDASKGLTNSETLQVEQDGKVRLSH 152
Query: 463 PAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGA 522
L PN I+E A L+ Q + +++L+ A T A
Sbjct: 153 QVRHQVALPPNYDYTPIAEHK-RVNEARTYPFTLDPFQDTAIS-CIDRGESVLVSAHTSA 210
Query: 523 GKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVR 582
GKT VA I Q L + +++Y +P+KAL + L V
Sbjct: 211 GKTVVAEYAIAQSLKNKQ-----------RVIYTSPIKALSNQKYRELLAEFGD----VG 255
Query: 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641
++GD T+ + +V T E + + + V +I DE+H + D RG
Sbjct: 256 LMTGDITINP----DAGCLVMTTEILRSMLYRGSEVMRE--VAWVIFDEVHYMRDKERGV 309
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
V E + + +R V LSAT+PN + A ++ + ++RP PL
Sbjct: 310 VWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPL- 361
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVA------------------------------ 731
Q Y+ + E+ A
Sbjct: 362 QHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA 421
Query: 732 ------------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+ V++F S+++ + A + +D E
Sbjct: 422 KGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD------DEKEAL 475
Query: 774 REILQSHTDMVKSND--------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
+I + ++ D + LL G IHH+G+ ++++E LF +G ++VL
Sbjct: 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+T T + G+N+PA TV+ + ++ ++ W +S + +QM GRAGR D G I++
Sbjct: 536 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQMSGRAGRRGLDDRGIVIMM 593
Query: 886 TGHSELRYYLSLMN--QQLPIESQFVSKLADQLN 917
M Q ++S F LN
Sbjct: 594 IDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 627
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 1e-33
Identities = 112/569 (19%), Positives = 212/569 (37%), Gaps = 98/569 (17%)
Query: 1275 EPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEA 1334
P+ F + S + S+ + + K ++ LP P+ E
Sbjct: 113 VPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEH 172
Query: 1335 LYQGFKH-----FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389
+P Q + + ++VLV+A T +GKT+ +E+AI ++ +
Sbjct: 173 KRVNEARTYPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNK---- 227
Query: 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKW 1449
R +Y +P++AL+ ++YR+ +FG +G+ +TG D+ + ++ T E
Sbjct: 228 -QRVIYTSPIKALSNQKYRELLAEFGD-VGL----MTG----DITINPDAGCLVMTTEIL 277
Query: 1450 DALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALS 1508
++ R + +++V+ I DE+H + + G V E + + +K+R V LS
Sbjct: 278 RSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP-------DKVRYVFLS 328
Query: 1509 TSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHI---------------QGVDITNF 1552
++ NA + EWI S RP PL+ ++ NF
Sbjct: 329 ATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 388
Query: 1553 EARMQAMT-----------------------------KPTFTAIVQH--AKNEKPALVFV 1581
+ M +++ K IV+ K P +VF
Sbjct: 389 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFS 448
Query: 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE--------MLKATLR 1633
S++ A+ + D+K A + I + E + LR
Sbjct: 449 FSKRDCEELALKMSKLDFNSDDEKEAL----TKIFNNAIALLPETDRELPQIKHILPLLR 504
Query: 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN 1693
G+G H GL +EV+ LF+ G +KV + + G+ + A VV + +DGQ+
Sbjct: 505 RGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ- 563
Query: 1694 AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH-APRKEYYKKFLRLTQNP------NYY 1746
+ +QM G A R LD+ G +++ + K ++ + Y
Sbjct: 564 -FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 622
Query: 1747 NLQGVSHRHLSDHLSELVENTISDLEASK 1775
N+ R ++E++ +
Sbjct: 623 NMILNLMRVEGISPEFMLEHSFFQFQNVI 651
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-38
Identities = 107/531 (20%), Positives = 188/531 (35%), Gaps = 96/531 (18%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
+ + G + L PN I+E A L+ Q
Sbjct: 37 TNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKR-VNEARTYPFTLDPFQDTAI 95
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ +++L+ A T AGKT VA I Q L + +++Y +P+KAL
Sbjct: 96 S-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ-----------RVIYTSPIKALSN 143
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLV 624
+ L V ++GD T+ + +V T E + + + V
Sbjct: 144 QKYRELLAEFGD----VGLMTGDITINP----DAGCLVMTTEILRSMLYRGSEVMRE--V 193
Query: 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
+I DE+H + D RG V E + + +R V LSAT+PN + A ++
Sbjct: 194 AWVIFDEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKI 246
Query: 684 LEKGLFYFDNSYRPVPLSQQYI-------------------------------------- 705
+ ++RP PL
Sbjct: 247 HSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306
Query: 706 ------GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLIFVHSRKETAKTARAIRDT 756
+ K+V + K + V++F S+++ + A +
Sbjct: 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 366
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSND--------LKDLLPYGFAIHHAGMTRGD 808
+D E +I + ++ D + LL G IHH+G+
Sbjct: 367 DFNSD------DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420
Query: 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868
++++E LF +G ++VL +T T + G+N+PA TV+ + ++ ++ W +S + +QM
Sbjct: 421 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQMS 478
Query: 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMN--QQLPIESQFVSKLADQLN 917
GRAGR D G I++ M Q ++S F LN
Sbjct: 479 GRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 529
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 3e-34
Identities = 109/552 (19%), Positives = 206/552 (37%), Gaps = 98/552 (17%)
Query: 1292 GSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKH-----FNPIQ 1346
S+ + + K ++ LP P+ E +P Q
Sbjct: 32 ASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQ 91
Query: 1347 TQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406
+ + ++VLV+A T +GKT+ +E+AI ++ + R +Y +P++AL+ ++
Sbjct: 92 DTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNK-----QRVIYTSPIKALSNQK 145
Query: 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466
YR+ +FG +G+ +TG D+ + ++ T E ++ R + +++V+
Sbjct: 146 YRELLAEFGD-VGL----MTG----DITINPDAGCLVMTTEILRSMLYR--GSEVMREVA 194
Query: 1467 LFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT- 1524
I DE+H + + G V E + + +K+R V LS ++ NA + EWI
Sbjct: 195 WVIFDEVHYMRDKERGVVWEETIILLP-------DKVRYVFLSATIPNAMEFAEWICKIH 247
Query: 1525 SHGLFNFPPGVRPVPLEIHI---------------QGVDITNFEARMQAMT--------- 1560
S RP PL+ ++ NF+ M +++
Sbjct: 248 SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 307
Query: 1561 --------------------KPTFTAIVQH--AKNEKPALVFVPSRKYVRLTAVDLMTYS 1598
K IV+ K P +VF S++ A+ +
Sbjct: 308 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 367
Query: 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEE--------MLKATLRHGVGYLHEGLNKTDQEV 1650
D+K A + I + E + LR G+G H GL +EV
Sbjct: 368 FNSDDEKEAL----TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 423
Query: 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710
+ LF+ G +KV + + G+ + A VV + +DGQ+ + +QM G A
Sbjct: 424 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRA 481
Query: 1711 SRPLLDNSGKCVILCHA-PRKEYYKKFLRLTQNP------NYYNLQGVSHRHLSDHLSEL 1763
R LD+ G +++ + K ++ + YN+ R +
Sbjct: 482 GRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFM 541
Query: 1764 VENTISDLEASK 1775
+E++ +
Sbjct: 542 LEHSFFQFQNVI 553
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-25
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 15/176 (8%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + A N ++CAPTG GKT V++L L K+V+ A
Sbjct: 9 QLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG------KVVFFANQ 61
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQIEETQIIVTTPEKWDIITRKSG 616
+ + S + + +SG + IE+ II+ TP+ G
Sbjct: 62 IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN-G 120
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV--RQIETTKEHIRLVGLSATL 670
+ L+I DE H + ++ I+ R + + E+ ++VGL+A++
Sbjct: 121 AIPSLSVFTLMIFDECH--NTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASV 174
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-13
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 11/165 (6%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N ++ APTG GKT S + +K + V+ A + +++ + F +
Sbjct: 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78
Query: 1417 GLGMRVVELTGETAMDLK---LLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDE 1472
LG + ++G T+ + ++E III TP+ + L+ + +L I DE
Sbjct: 79 -LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPS--LSVFTLMIFDE 135
Query: 1473 LHLIGGQGGPVLEVIVSRM--RYIASQVENKIRIVALSTSLANAK 1515
H I+ R + + ++V L+ S+
Sbjct: 136 CHNTSKN--HPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGD 178
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 3e-25
Identities = 65/357 (18%), Positives = 123/357 (34%), Gaps = 38/357 (10%)
Query: 335 CTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKS---IREEAR 391
T LA A + + K+E+ +L ++ AT S I E
Sbjct: 84 YTGLAEAIENWDFSKLEKL-----ELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECE 138
Query: 392 RLKDESASDG----GRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPE 447
++ S + + R W QL A G + A+ D+ E
Sbjct: 139 EIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQL------ALDTTGYYRASELWDIRE 192
Query: 448 GSQRFTNKGYEEIHVPAMKHK-------PLDPNEKLIKISEMPEWAQPAFK-GMTQLNRV 499
+ + + + ++ D N S +P +
Sbjct: 193 DNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSY 252
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + + A++ N L+CAPTG+GKT V++L + K+V++A
Sbjct: 253 QIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVVFLATK 305
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDIITRKSG 616
+ + + + V+ +SG+ + IE++ IIV TP+ G
Sbjct: 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-G 364
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
T + L+I DE H N P + ++ + + +++GL+A++
Sbjct: 365 TLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 5e-11
Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 10/213 (4%)
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
E+ P L + + P K Q ++ N N L+ APT
Sbjct: 217 SEEAEPDDNLSENLGSAAEGIGKPP---PVYETKKARSYQIELAQPAIN-GKNALICAPT 272
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKT S + Q + V++A + +++ ++ F + G V ++
Sbjct: 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSVQGIS 331
Query: 1427 GETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
GE ++ ++E II+ TP+ + +L I DE H G P
Sbjct: 332 GENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDECHNTTG-NHPY 389
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
++ + + +I+ L+ S+
Sbjct: 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 480 SEMPEWAQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
S+ A A QL Q V + AL NI++C PTG+GKT VAV L
Sbjct: 17 SDEENVAARASPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDK 75
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQI 595
+ K++ + LV ++ +V LSGD + + +
Sbjct: 76 KKKASEPG-----KVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV 130
Query: 596 EETQIIVTTPEKW--DIITRKSGDRTYTQL--VKLLIIDEIHLLHDNRGPVLESIV---- 647
+ II++T + ++ ++G+ QL L+IIDE H H N+ V +I+
Sbjct: 131 KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH--HTNKEAVYNNIMRHYL 188
Query: 648 ------ARTVRQIETTKEHIRLVGLSAT 669
R ++ + +++GL+A+
Sbjct: 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 4e-15
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 25/171 (14%)
Query: 1358 DNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
N+++ PTGSGKT + + L +KASE G + + + L ++ +R F
Sbjct: 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG--KVIVLVNKVLLVEQLFRKEFQPF 106
Query: 1415 GQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKW--DALSRRWKQRKYVQ--QVSL 1467
+ RV+ L+G+T + + +++ IIIST + L+ + VQ SL
Sbjct: 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 165
Query: 1468 FIIDELHLIGGQGGPVLEVIVSRM----------RYIASQVENKIRIVALS 1508
IIDE H V I+ + V +I+ L+
Sbjct: 166 IIIDECHHT--NKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLT 214
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 4e-24
Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
+ Q + + A++ N L+CAPTG+GKT V++L + K+V
Sbjct: 7 KARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVV 59
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDII 611
++A + + + + V+ +SG+ + IE++ IIV TP+
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ-IETTKEHIRLVGLSATL 670
G T + L+I DE H + ++ R + Q + + +++GL+A++
Sbjct: 120 FED-GTLTSLSIFTLMIFDECH--NTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV 176
Query: 671 PN 672
Sbjct: 177 GV 178
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 70.4 bits (171), Expect = 3e-12
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N L+ APTGSGKT S + Q + V++A + +++ ++ F +
Sbjct: 22 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81
Query: 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473
G V ++GE ++ K++E II+ TP+ + +L I DE
Sbjct: 82 -QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDEC 139
Query: 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL--ANAKDLGEWI 1521
H G P ++ + + +I+ L+ S+ NAK++ E I
Sbjct: 140 HNTTG-NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 188
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-22
Identities = 62/356 (17%), Positives = 124/356 (34%), Gaps = 38/356 (10%)
Query: 335 CTRLARAQDQEERKKIEEE------MMGLGPDLAAILDQLHATRATAKERQKNLEKSIRE 388
T LA A + + K+E+ + + + + + + E+ +
Sbjct: 84 YTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQI 143
Query: 389 EARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEG 448
R S + G + R W QL A G + A+ D+ E
Sbjct: 144 SENR----SKAAGITKLIECLCRSDKEHWPKSLQL------ALDTTGYYRASELWDIRED 193
Query: 449 SQRFTNKGYEEIHVPAMKHK-------PLDPNEKLIKISEMPEWAQPAFK-GMTQLNRVQ 500
+ + + + ++ D N S +P + Q
Sbjct: 194 NAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQ 253
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
+ + A++ N L+CAPTG+GKT V++L + K+V++A
Sbjct: 254 IELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVVFLATKV 306
Query: 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDIITRKSGD 617
+ + + + V+ +SG+ + IE++ IIV TP+ G
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GT 365
Query: 618 RTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ-IETTKEHIRLVGLSATLPN 672
T + L+I DE H + ++ R + Q + + +++GL+A++
Sbjct: 366 LTSLSIFTLMIFDECH--NTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV 419
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 2e-10
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 12/224 (5%)
Query: 1303 HLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLV 1362
+ E+ P L + + P K Q ++ N N L+
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPP---PVYETKKARSYQIELAQPAIN-GKNALI 268
Query: 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422
APTGSGKT S + Q + V++A + +++ ++ F + G V
Sbjct: 269 CAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSV 327
Query: 1423 VELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
++GE ++ ++E II+ TP+ + +L I DE H G
Sbjct: 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDECHNTTG- 385
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSL--ANAKDLGEWI 1521
P ++ + + +I+ L+ S+ NAK++ E I
Sbjct: 386 NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 429
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 99.5 bits (247), Expect = 7e-21
Identities = 60/295 (20%), Positives = 106/295 (35%), Gaps = 14/295 (4%)
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
+ E+ + + LE+ + + N
Sbjct: 222 IWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTR 281
Query: 686 KGLFYFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLI 738
G NS R K+ + + ++V K + +++
Sbjct: 282 DGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQSHTDMVKSNDLKDLLPYG 796
FV S+K + A + N+ + + + + D+ + + LL G
Sbjct: 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401
Query: 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856
A+HH G+ ++L+E LF G ++VL +T T A G+NLP TVI + ++
Sbjct: 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRE 461
Query: 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIIT---GHSELRYYLSLMNQQLPIESQF 908
L+P + QM GRAGR DS G I++ S + M ++SQF
Sbjct: 462 --LTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQF 514
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 3e-14
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 24/203 (11%)
Query: 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403
Q + L D+V VAA T +GKT+ +E+AI H+ + + +Y +P++AL+
Sbjct: 42 TFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALS 95
Query: 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1463
+++RD++ F + +TG D+++ +I T E S ++ ++
Sbjct: 96 NQKFRDFKETFDDV---NIGLITG----DVQINPDANCLIMTTEIL--RSMLYRGADLIR 146
Query: 1464 QVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
V I DE+H + G V E ++ + ++ + LS ++ N + WIG
Sbjct: 147 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLP-------QHVKFILLSATVPNTYEFANWIG 199
Query: 1523 ATSHGLFN-FPPGVRPVPLEIHI 1544
T RPVPLEI+I
Sbjct: 200 RTKQKNIYVISTPKRPVPLEINI 222
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 1e-12
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 1555 RMQAMTKPTFTAIVQH--AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
+K T+ IV + + P +VFV S+K A L + + +KS
Sbjct: 315 TQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI---- 370
Query: 1613 AEEVEPFIDNIQEE--------MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCV 1664
+E I +++E ++ L G+ H GL +E++ LF G IKV
Sbjct: 371 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF 430
Query: 1665 MSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724
+ + G+ L V+ + +DG N + + QM G A R LD++G +++
Sbjct: 431 ATETFAMGLNLPTRTVIFSSIRKHDG--NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488
Query: 1725 CHAP 1728
+
Sbjct: 489 AYNS 492
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-12
Identities = 59/323 (18%), Positives = 114/323 (35%), Gaps = 35/323 (10%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L D++ + A T AGKT VA I K +Y +P+KAL +
Sbjct: 50 HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT-----------KTIYTSPIKALSNQK 98
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL--V 624
+ ++ + ++GD + + ++ T E I R R + V
Sbjct: 99 FRDFKETFDDVNIGL--ITGDVQINP----DANCLIMTTE----ILRSMLYRGADLIRDV 148
Query: 625 KLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
+ +I DE+H ++D RG V E + I +H++ + LSAT+PN + A ++
Sbjct: 149 EFVIFDEVHYVNDQDRGVVWEEV-------IIMLPQHVKFILLSATVPNTYEFANWIGRT 201
Query: 684 LEKGLFYFDNSYRPVPLSQ-QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
+K ++ RPVPL + ++ + + + + K +
Sbjct: 202 KQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
+ A N GR + +S ++ + F
Sbjct: 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRG---GANRGGSRGAGAIGSNKRKFFTQDG 318
Query: 803 GMTRGDRQLVEDLFGDGHVQVLV 825
+ ++V L + ++V
Sbjct: 319 PSKKTWPEIVNYLRKRELLPMVV 341
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 93.9 bits (232), Expect = 2e-19
Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 21/190 (11%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + A+ N ++CAPTG GKT V++L L K+V+ A
Sbjct: 18 QLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQ 70
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQIEETQIIVTTPEKWDIITRKSG 616
+ + S + + +V +SG Q +E II+ TP+ +K G
Sbjct: 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-G 129
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
+ L+I DE H I +L G S LP +
Sbjct: 130 TIPSLSIFTLMIFDECHNTSKQ----------HPYNMIMFNYLDQKLGGSSGPLPQVIGL 179
Query: 677 ALFLRVNLEK 686
+ V K
Sbjct: 180 TASVGVGDAK 189
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 9e-12
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N ++ APTG GKT S + +K + + V+ A + ++ K+ +
Sbjct: 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKS-VFSKYFE 86
Query: 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473
G RV ++G TA ++ +++E III TP+ ++ + +L I DE
Sbjct: 87 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDEC 145
Query: 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
H Q + + + + +++ L+ S+
Sbjct: 146 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 3e-16
Identities = 94/645 (14%), Positives = 180/645 (27%), Gaps = 181/645 (28%)
Query: 1222 DFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQY 1281
+ + D + + + F V++ D + + +L K+ E DH I
Sbjct: 15 QYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKE--EIDH-------IIMSKDAVS 62
Query: 1282 FIRVVSDKWLGSQTVLPVSFRHLILPEKYP---PPTELLDLQPLPVTAL----RNPLYEA 1334
+ L Q + F +L Y P + QP +T + R+ LY
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 1335 LYQGFKHFN-----PIQTQVFTVLYNTDD--NVLVAAPTGSGKTI-----CSEFAILRNH 1382
Q F +N P ++ L NVL+ GSGKT C + +
Sbjct: 123 N-QVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 1383 QKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ-----GLGMRVVELTGETAMDLKLLE 1437
++ W + + + +L +D
Sbjct: 181 D--------FKIF--------------W-LNLKNCNSPETVLEMLQKLL--YQIDPNWTS 215
Query: 1438 KGQIIISTP----EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE-------- 1485
+ + L R K + Y L ++ + Q
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNV-----QNAKAWNAFNLSCKI 268
Query: 1486 VIVSRMRYIASQVEN----KIRIVALSTSL--ANAKDL-GEWIGATSHGLFNFPPGVRPV 1538
++ +R + + + I + S +L K L +++ L P V
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTT 325
Query: 1539 -PLEIHIQGVDITNFEARMQ---AMTKPTFTAIVQHA-KNEKPAL---------VFVPSR 1584
P + I I + A + T I++ + +PA VF
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P 382
Query: 1585 KYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL--RHGVG---YL 1639
+ + L L+W + ++ + + ++ K +L + +
Sbjct: 383 PSAHIPTILLS-------------LIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 1640 H----EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAH 1695
E K + E H +V Y N
Sbjct: 429 PSIYLELKVKLENEY-------------------------ALHRSIV--DHY-----NIP 456
Query: 1696 TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYYNL----QGV 1751
+ DL P LD I H E+ ++ + + Q +
Sbjct: 457 KTFDSDDL-------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLEQKI 507
Query: 1752 SHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASY 1796
H + + S + NT+ L+ K I + D P ++ +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDND----PKYERLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 7e-16
Identities = 98/593 (16%), Positives = 205/593 (34%), Gaps = 130/593 (21%)
Query: 418 LGQRQLLDLDTLA-FQQGGLFMANRKC-DLPEGSQR-FTNKGYEEI-HVP---------- 463
G+ Q D L+ F+ F+ N C D+ + + + + + I
Sbjct: 11 TGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 464 -AMKHKP-----------LDPNEKLIKISEMPEWAQPAFKG---MTQLNRVQS--RVY-- 504
+ K L N K + E QP+ + Q +R+ + +V+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 505 ------------KSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG----S 545
+ AL A N+L+ G+GKT VA+ L + D +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 546 FNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYDVKVRELSGDQTLTR----QQIEETQI 600
+ N + ++ L+ ++ N ++R ++K+R S L R + E +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 601 I---VTTPEKWD---------IITRKSGDRTYTQLVKLLIIDEIHLLHDNRG---PVLES 645
+ V + W+ + TR + T + I L H + ++S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 646 IVARTVRQI------ETTKEHIRLVGL-SATLPNYEDVA-LFLRVNLEKGLFYFDNSYR- 696
++ + + E + R + + + ++ + + VN +K ++S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 697 --PVPLSQQY--IGI---QVKKPLQRFQLM-NDLCYEKVVAVAGK-HQVLIFVHSRKETA 747
P + + + + P L+ D+ V+ V K H+ + KE+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 748 KTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP-------YGFAIH 800
+ I L + + E ++ R I+ + ++ K+ D DL+P Y H
Sbjct: 426 IS---IPSIYL--ELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 801 H-AGMTRGDR-QLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H + +R L +F D ++ + + AW + + + + Y K
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFY---KPYIC 535
Query: 858 ELSPL------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904
+ P I+ L + E +I + +++L ++LM + I
Sbjct: 536 DNDPKYERLVNAILDFLPK--------IEENLICSKYTDL-LRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 2e-11
Identities = 83/684 (12%), Positives = 183/684 (26%), Gaps = 224/684 (32%)
Query: 542 DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQII 601
+ G + I+ V + +D K + L++++I+ I
Sbjct: 10 ETGEHQYQYKDILSV------------FEDAFVDNFDCKDVQDMPKSILSKEEIDH---I 54
Query: 602 VTTPEK--------WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
+ + + W + + V+ +L N ++ I +
Sbjct: 55 IMSKDAVSGTLRLFW--TLLSKQEEMVQKFVE-------EVLRINYKFLMSPIKTEQRQP 105
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
T+ +I Y D +F + N+ R P +++++ L
Sbjct: 106 SMMTRMYI-----EQRDRLYNDNQVFAKYNV----------SRLQPY------LKLRQAL 144
Query: 714 QRFQLMNDLCYEKVVAV-----AGKHQVLIFVHSRKETAKTARAIRDTALEND------- 761
+ K V + +GK + ++
Sbjct: 145 LELR------PAKNVLIDGVLGSGK-TWV-----------ALDVCLSYKVQCKMDFKIFW 186
Query: 762 -TLGRFLKEDSVSREILQ----------------SHTDMVKSNDLKDLLPYGFAIHHAGM 804
L ++V E+LQ S ++ + ++ L
Sbjct: 187 LNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241
Query: 805 TRGDRQL-----VEDL-----FGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYN 850
+ L V++ F + ++L++T T H +
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDH------ 293
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVS 910
L+P ++ +L + YL Q LP E +
Sbjct: 294 HSMT----LTPDEVKSLLLK-----------------------YLDCRPQDLPREVLTTN 326
Query: 911 KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN---PALYGLAPEVLKE------- 960
+ AE + W + ++ L +L L P ++
Sbjct: 327 PRRLSIIAESI------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 961 -----DITL-------GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDL-----GRIA 1003
I + V L + +LV+ K + + ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 1004 SYYYISHGT-ISTYNEHLKPTMGDIELCRLFSLSEEFKYV---------TVRQDEKMEL- 1052
+ Y + H + + YN D +Y + E+M L
Sbjct: 441 NEYAL-HRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 1053 -AKLLD------RVPIPVKESLEEPSAKINVLLQ-----AYISQLKLEGLSLTSDMV-FI 1099
LD ++ + + +N L Q YI + L + ++ F+
Sbjct: 494 RMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 1100 TQSAGRLLRALFEIVLKRGWAQLA 1123
+ L+ + + +L ++A
Sbjct: 553 PKIEENLICSKYTDLL-----RIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-09
Identities = 102/736 (13%), Positives = 198/736 (26%), Gaps = 261/736 (35%)
Query: 194 LDDDMGVAVEFEEND---DDEEE--SDLDMVQEED--------EEEEEDVAEPNA-SGAM 239
+D + G +++ D E+ + D +D EE + + +A SG +
Sbjct: 7 MDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 240 QMGGGIDDDDESGDANEGMSLNVQDIDA--Y-WLQRKISQAFDQQIDPQQCQKLAEEVLK 296
++ + E E + V+++ Y +L I +Q P ++ E
Sbjct: 66 RLFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRD 117
Query: 297 ILAEGDDR---------EVENKL---LYHLQ------------FDKFSLI-------KFL 325
L + + KL L L+ K + K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 326 LRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKS 385
+ K+ W L E ++ + L +D +R+ K S
Sbjct: 178 CKMDFKIFWLN-LKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 386 IREEARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTL-------AFQQGGLFM 438
I+ E RRL L + + LL L + AF
Sbjct: 230 IQAELRRL--------------LKSKP------YENCLLVLLNVQNAKAWNAF------- 262
Query: 439 ANRKCDLPEGSQ-----RFTN-----KGYEEIHVPAMKH-KPLDPNEKL--------IKI 479
N C + RF H+ H L P+E +
Sbjct: 263 -NLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 480 SEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
++P L++ N + + L
Sbjct: 316 QDLPR---------------------EVLTT--NPRRLSIIAE----------SIRDGLA 342
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL--QMY--------DVKVRELSGDQT 589
D N+K V + ++ + L +M+ +
Sbjct: 343 TWD-------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT----IL 391
Query: 590 LTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
L+ + ++V K+ ++ ++ + T + I ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----------IPSIYL-------- 433
Query: 646 IVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-- 702
++E H +V N+ K + + P L Q
Sbjct: 434 ---ELKVKLENEYALHRSIVD---------------HYNIPKT--FDSDDLIPPYLDQYF 473
Query: 703 -QYIG--IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759
+IG ++ + +R L + + F+ + TA + L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLD-----------FRFLEQKIRHDSTAWNASGSIL- 521
Query: 760 NDTLGRFLKEDSVSREILQSHTD---MVKSNDLKDLLP-YGFAIHHAGMTRGDRQLV--- 812
+TL + I + +V N + D LP + + T L+
Sbjct: 522 -NTLQQLKF---YKPYICDNDPKYERLV--NAILDFLPKIEENLICSKYTD----LLRIA 571
Query: 813 -----EDLFGDGHVQV 823
E +F + H QV
Sbjct: 572 LMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 6e-08
Identities = 110/806 (13%), Positives = 210/806 (26%), Gaps = 311/806 (38%)
Query: 1074 INVLLQAYISQLKLEGLS------LTS---DMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124
++V A++ + + L+ D + +++ A LF +L + ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQ 80
Query: 1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPK 1184
K V+ LR N F Q + +
Sbjct: 81 KF-------------VEEVLR-----IN--------YKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 1185 MGRTLHKFVHQFPKLILAAHV---QPIT--RTVLKVELTITPDFLWDDKVHG-------- 1231
L+ F K +V QP R L EL + L + G
Sbjct: 115 QRDRLYNDNQVFAKY----NVSRLQPYLKLRQALL-ELRPAKNVL----IDGVLGSGKTW 165
Query: 1232 ---------YVEP------FWVIV-EDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
V+ FW+ + N E +L ML+K + D N+T
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDP--NWTSRSDH 219
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEAL 1335
+ I + + R L+ + Y LL L ++N
Sbjct: 220 SSNIKLRIHSIQAE-----------LRRLLKSKPY--ENCLLVLL-----NVQNA----- 256
Query: 1336 YQGFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVM 1391
+ + FN + + +L T V + I + +H E
Sbjct: 257 -KAWNAFN-LSCK---ILLTTRFKQVTDFLSAATTTHISLD-----HHSMTLTPDEV--- 303
Query: 1392 RAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA----MDLKLLEKGQIIISTPE 1447
L K + L R +L E L ++ + I
Sbjct: 304 -------KSLLLK-----Y-------LDCRPQDLPREVLTTNPRRLSII--AESIRDGLA 342
Query: 1448 KWDALSRRWKQRKY-----VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKI 1502
WD WK + + SL VLE R +
Sbjct: 343 TWD----NWKHVNCDKLTTIIESSL--------------NVLEPAEYRKMF--------- 375
Query: 1503 RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP---LEIHIQGVDITNFEARMQAM 1559
L + FPP +P L + V ++ + +
Sbjct: 376 ------------DRLS--V---------FPPSA-HIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 1560 TKPTFTAIVQHAKNEK---PALVF-----VPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW 1611
K ++ + + K P++ + + + + VD Y+ +
Sbjct: 412 HK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIP- 466
Query: 1612 PAEEVEPFIDN-IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA---------GKIK 1661
P++D H +G+ H L + LF KI+
Sbjct: 467 ------PYLDQYF--------YSH-IGH-H--LKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721
S W + + LQ +
Sbjct: 509 ----HDSTAWNAS-----------------------GSILNTLQQL-------------- 527
Query: 1722 VILCHAPRKEYYKKFLRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCI-IIE 1780
++YK + + N Y R ++ + + + +L SK ++
Sbjct: 528 ---------KFYKPY--ICDNDPKY------ERLVNA-ILDFLPKIEENLICSKYTDLLR 569
Query: 1781 EDMDLSPSNHGMIASYYYISYTTIER 1806
+ L + + ++ ++R
Sbjct: 570 --IALMAEDEA----IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 7e-05
Identities = 64/508 (12%), Positives = 132/508 (25%), Gaps = 196/508 (38%)
Query: 1689 DGQENAHTDYPVTDLLQMMGHASRP--LLDNSGKCVILCHAPRKEYYKKFLRLTQNPNY- 1745
D ++ + + ++ S L L +E +KF+ NY
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFW------TLLSKQ-EEMVQKFVEEVLRINYK 92
Query: 1746 -------------------Y-----NLQGVSHRHLSDHLS--ELVE---NTISDLEASKC 1776
Y L + ++S + + +L +K
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 1777 IIIEEDMDLSPSNHGM-------IASYYYISYTTIERFSS-----SLTPKTRMKGLLEVL 1824
++I G+ +A +SY + +L + +LE+L
Sbjct: 153 VLI----------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 1825 ------------ASASEYAQLPIRPGE-EEVVRRLIHHQRFSFENPKFTDPHVKANALLQ 1871
+ + + + +R + +RRL+ + + N LL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-------------ENCLL- 248
Query: 1872 AHFSRQQVGGNLKLDQEEVLLSASRLLQAM-----VDVISSNGWLSLALLAMEVSQMV-- 1924
V L V ++ A + + + ++ L A + +
Sbjct: 249 -------V-----LL--NV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1925 --TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL 1982
+ + + L +K L R Q+ P RE+L + +L
Sbjct: 293 HHSMTLTPDEVKSL----LLKYLDCRPQDLP------------------REVLTTNPRRL 330
Query: 1983 LDIARFCNRFPN----------------IDMSFEVQDSENVRA----------GEDITLQ 2016
IA I+ S V + R I
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 2017 VVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFA 2076
+L + W+ V ++ K L + S V+
Sbjct: 391 -LLSL-I---------------------WFDV--IKSDVMVVVNK---LHKYSLVEKQPK 422
Query: 2077 APAEAGKKTYTLY-FMCDSYMGCDQEYA 2103
+ T ++ + + + EYA
Sbjct: 423 ------ESTISIPSIYLELKVKLENEYA 444
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 7e-14
Identities = 78/497 (15%), Positives = 152/497 (30%), Gaps = 120/497 (24%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q +Y + N L+ PTG GKT +A++ +L K++ +AP
Sbjct: 14 QEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRL----------TKYGGKVLMLAPT 61
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLT--RQQIEETQIIVTTP------------ 605
K LV + + + K+ L+G+++ + ++IV TP
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 606 --EKWDIIT-----RKSGDRTYTQLVKLLIIDEIHLL--------HDNRGPVLESIVART 650
E +I R G+ Y + + + L ++E I
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181
Query: 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQ 708
+ IE E+ V +E V + L ++ R PL++ +
Sbjct: 182 IEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241
Query: 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR----------DTAL 758
+ + +++ G H + + K AI +
Sbjct: 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301
Query: 759 END----------------TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH-- 800
+ + R K S+ + + D K + LK+++
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQN 361
Query: 801 --------------------------------------HAGMTRGDRQLVEDLFGDGHVQ 822
G+++ +++L+ D F G
Sbjct: 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
VLV+T+ G+++P +++ Y P S + +Q GR GR
Sbjct: 422 VLVATSVGEEGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGR-HMPGRVII 470
Query: 883 IIITGHSELRYYLSLMN 899
++ G + YY S
Sbjct: 471 LMAKGTRDEAYYWSSRQ 487
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-07
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N L+ PTG GKT+ A++ + ++ G + + +AP + L + + F
Sbjct: 25 NCLIVLPTGLGKTL---IAMMIAEYRLTKYGG-KVLMLAPTKPLVLQHAESFRRLFNLPP 80
Query: 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELH 1474
++V LTGE + + K + ++I++TP+ + + VSL + DE H
Sbjct: 81 E-KIVALTGEKSPEERSKAWARAKVIVATPQTI----ENDLLAGRISLEDVSLIVFDEAH 135
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
G V R Q +N ++ L+ S + +
Sbjct: 136 RAVGNY-----AYVFIAREYKRQAKNP-LVIGLTASPGSTPE 171
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-10
Identities = 69/379 (18%), Positives = 123/379 (32%), Gaps = 71/379 (18%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+ PTG+GKT+VA + + +L + + V P AL
Sbjct: 112 CIVLPTGSGKTHVA-MAAINEL-------------STPTLIVVPTLALAE---------- 147
Query: 575 QMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q + ++ + + + E + V+T +D LLI DE+
Sbjct: 148 QWKE-RLGIFGEEYVGEFSGRIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEV 201
Query: 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF--Y 690
H L A + QI +GL+AT + L+ + +F +
Sbjct: 202 HHL-----------PAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELF 250
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750
D+ I V + + L + +
Sbjct: 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310
Query: 751 RAIR--DTALENDTLGRFLKEDS-----VSREILQSHTDM-----VKSNDLKDLLPYGFA 798
AL R + +S REIL+ H + N+L + F
Sbjct: 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL 370
Query: 799 IH--HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPEKGA 855
I +R +R+ + + F G + +VS+ L G+++P A+ +I +
Sbjct: 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----------MS 420
Query: 856 WTELSPLDIMQMLGRAGRP 874
+ S + +Q LGR RP
Sbjct: 421 GSG-SAREYIQRLGRILRP 438
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420
+ PTGSGKT + AI + + P ALA++ W+ + G
Sbjct: 112 CIVLPTGSGKTHVAMAAI-NELST-------PTLIVVPTLALAEQ----WKERLGIFGEE 159
Query: 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480
V E +G ++ E + +ST +D+ K + L I DE+H + +
Sbjct: 160 YVGEFSG------RIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEVHHLPAES 208
Query: 1481 -GPVLEVIVSRMRY 1493
+ ++ ++ R
Sbjct: 209 YVQIAQMSIAPFRL 222
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 1311 PPP----TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
P P +L + L+N + + GF+ PIQ Q V+ + + +L +APT
Sbjct: 21 PDPIATFQQLDQEYKINSRLLQN-ILD---AGFQMPTPIQMQAIPVMLHGRE-LLASAPT 75
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKT+ IL ++ + G RA+ I+P LA + +R+ K +G G R+ +
Sbjct: 76 GSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELI-KISEGTGFRIHMIH 133
Query: 1427 GETAMDLKL---LEKG-QIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDE 1472
K K I+++TP + L + + V ++DE
Sbjct: 134 KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD-PPGIDLASVEWLVVDE 183
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-08
Identities = 56/375 (14%), Positives = 98/375 (26%), Gaps = 102/375 (27%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L +L GAGKT + IL + + + +AP + +++E+
Sbjct: 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAE----------CARRRLRTLVLAPTRVVLSEM 53
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
+ + G I +T + + T ++
Sbjct: 54 KEAFHGLDVKFHTQAFSAHGSGR--------EVIDAMCHA---TLTYRMLEPTRVVNWEV 102
Query: 627 LIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+I+DE H L SI AR + ++AT P
Sbjct: 103 IIMDEAHFLD------PASIAARGWAAHRARANESATILMTATPPGTS------------ 144
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
F +S + Q I P + + +D K F+ S +
Sbjct: 145 --DEFPHSNGEIEDVQTDI------PSEPWNTGHDWILAD------KRPTAWFLPSIRAA 190
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A ++R ++R+ + +K
Sbjct: 191 NVMAASLRK---------AGKSVVVLNRKTFEREYPTIKQKKPD---------------- 225
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT---QIYNPEKGAWTELSPLD 863
+++T G NL V+ T + E PL
Sbjct: 226 ----------------FILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLR 269
Query: 864 I-----MQMLGRAGR 873
I Q GR GR
Sbjct: 270 ISASSAAQRRGRIGR 284
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 50/341 (14%), Positives = 96/341 (28%), Gaps = 96/341 (28%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
+ + APTG GKT ++T L K V P LV + + L
Sbjct: 38 SFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTLVKQTLERLQ- 85
Query: 573 RLQMYDVKVRELSG-------DQTLTRQQIEETQIIVTTP----EKWDIITRKSGDRTYT 621
+L VK+ ++ + ++ I+V + + + +++K
Sbjct: 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKR------ 139
Query: 622 QLVKLLIIDEIHLLHDNRGPVLES--IVARTVRQIETTKEHIRLVGLSATLPN--YEDVA 677
+ +D++ D VL++ + + + +E IR S YE
Sbjct: 140 --FDFVFVDDV----DA---VLKASRNIDTLLMMVGIPEEIIRKA-FSTIKQGKIYERPK 189
Query: 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------QRFQLMNDLCYEKVVAV 730
L L + + V + + EK+V +
Sbjct: 190 NLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRS--KEKLVEL 247
Query: 731 AGKH--QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788
+LIF +E L +LK
Sbjct: 248 LEIFRDGILIFA-QTEEEG-------------KELYEYLKRF------------------ 275
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
F + G T + + + F G + +L+
Sbjct: 276 -------KF---NVGETWSEFEKNFEDFKVGKINILIGVQA 306
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 3e-06
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
A+ + + G + F D + ++LV+T + G+NL +I +
Sbjct: 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSIN 404
Query: 853 KGAWTELSPLD---IMQMLGRAGRPQYDSYGEGIIITGHSE-LRYYLSLMNQQL-PIESQ 907
+ EL P+ +Q+ GRAGR + EG + T + E L ++ + + PI +
Sbjct: 405 EKGERELEPITTSQALQIAGRAGRFSSR-FKEGEVTTMNHEDLSLLKEILKRPVDPIRAA 463
Query: 908 FVSKLADQLNA 918
+ A+Q+
Sbjct: 464 GLHPTAEQIEM 474
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 45/159 (28%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+ PTG+GKT+VA + L+ VV L+
Sbjct: 112 CIVLPTGSGKTHVA----------------------MAAINELSTPTLI--VVPTLALAE 147
Query: 575 QMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q + ++ + + + E + V+T +D LLI DE+
Sbjct: 148 QWKE-RLGIFGEEYVGEFSGRIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEV 201
Query: 633 HLLHDNRGPVLESIVARTVRQI-ETTKEHIRLVGLSATL 670
H L P A + QI + + RL GL+AT
Sbjct: 202 HHL-----P------AESYVQIAQMSIAPFRL-GLTATF 228
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 40/264 (15%), Positives = 70/264 (26%), Gaps = 55/264 (20%)
Query: 503 VYKSALSSADNILLCAPTGAGKTNVAVLT-ILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
V + ++ GAGKT IL + + + +AP +
Sbjct: 11 VDEDIFRKKRLTIMDLHPGAGKT-----KRILPSIVREALLRR------LRTLILAPTRV 59
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYT 621
+ AE+ L Y + + + T + T
Sbjct: 60 VAAEMEEALRGLPIRYQT--------PAVKSDHTGREIVDLMCHA---TFTTRLLSSTRV 108
Query: 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681
L+++DE H S+ AR + ++AT P
Sbjct: 109 PNYNLIVMDEAHFTD------PCSVAARGYISTRVEMGEAAAIFMTATPPGST------- 155
Query: 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741
F S P+ ++ I + F + D + + FV
Sbjct: 156 -------DPFPQSNSPIEDIEREIPERSWN--TGFDWITDYQ----------GKTVWFVP 196
Query: 742 SRKETAKTARAIRDTALENDTLGR 765
S K A +R + L R
Sbjct: 197 SIKAGNDIANCLRKSGKRVIQLSR 220
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 84/483 (17%), Positives = 166/483 (34%), Gaps = 94/483 (19%)
Query: 473 NEKLIK-ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVL 530
++++ K I+ M F G+T VQ + K LSS D+ ++ A TG GKT ++
Sbjct: 80 DKEIHKAITRM------EFPGLTP---VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLI 130
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNL-SNRLQMYDVKVRELSG 586
I Q L + D + K V VAP + L + V + + L G
Sbjct: 131 PIFQHLINTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 186
Query: 587 DQTLTRQQI----EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEI-HLLHDNRG 640
I++ TP + D++ + S + + V ++DE LL
Sbjct: 187 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK--FFRFVDYKVLDEADRLLEIGFR 244
Query: 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFD----NS 694
LE+I + + ++I+ + SATL + + +A + +K + D N
Sbjct: 245 DDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN---KKECLFLDTVDKNE 301
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
Q + + +K + +++ ++ +IF + K T+
Sbjct: 302 PEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI-- 358
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLV 812
LK+ I H +T+ R +
Sbjct: 359 ----------------------------------LKNEFKKDLPILEFHGKITQNKRTSL 384
Query: 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ---MLG 869
F +LV T A G++ P +++ P ++ +G
Sbjct: 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV---------PSELANYIHRIG 431
Query: 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIESQFVSKLADQLNAEIVLGTVQNA 928
R R G ++ EL + L + + I Q + ++++ +E++ +
Sbjct: 432 RTAR--SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEP 489
Query: 929 KEA 931
++
Sbjct: 490 EDI 492
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 87/331 (26%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNLSNRL 574
+ +G GKT VL +L Q+ + + ++P L +V+ +
Sbjct: 71 SQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVIEQMGKF- 121
Query: 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK-WDIITRKSGDRTY-TQLVKLLIIDEI 632
++K+ L R Q QI++ TP D ++ + + +K+ ++DE
Sbjct: 122 -YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL---KFIDPKKIKVFVLDEA 177
Query: 633 HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF--------LRV 682
++ +G I + +++ SAT + V F +
Sbjct: 178 DVMIATQGHQDQSIRI-------QRMLPRNCQMLLFSATFE--DSVWKFAQKVVPDPNVI 228
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
L++ D + Q Y + ++FQ + +L Y + +A Q +IF H+
Sbjct: 229 KLKREEETLDT------IKQYY--VLCSSRDEKFQALCNL-YG-AITIA---QAMIFCHT 275
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
RK L L ++ +L
Sbjct: 276 RKTA--------------SWLAAELSKEGHQVALL-----------------------SG 298
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
M R V + F +G +VLV+T A G
Sbjct: 299 EMMVEQRAAVIERFREGKEKVLVTTNVCARG 329
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 87/331 (26%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNLSNRL 574
+ +G GKT VL +L Q+ + + ++P L +V+ +
Sbjct: 138 SQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVIEQMGKF- 188
Query: 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK-WDIITRKSGDRTY-TQLVKLLIIDEI 632
++K+ L R Q QI++ TP D ++ + + +K+ ++DE
Sbjct: 189 -YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL---KFIDPKKIKVFVLDEA 244
Query: 633 HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF--------LRV 682
++ +G I + +++ SAT + V F +
Sbjct: 245 DVMIATQGHQDQSIRI-------QRMLPRNCQMLLFSATFE--DSVWKFAQKVVPDPNVI 295
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
L++ D + Q Y + ++FQ + +L Y + +A Q +IF H+
Sbjct: 296 KLKREEETLDT------IKQYY--VLCSSRDEKFQALCNL-YG-AITIA---QAMIFCHT 342
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
RK L L ++ +L
Sbjct: 343 RKTA--------------SWLAAELSKEGHQVALL-----------------------SG 365
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
M R V + F +G +VLV+T A G
Sbjct: 366 EMMVEQRAAVIERFREGKEKVLVTTNVCARG 396
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 42/250 (16%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLT-ILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565
L +L G+GKT IL Q+ D + +AP + + AE
Sbjct: 17 MLRKRQMTVLDLHPGSGKT-----RKILPQII----KDAIQQR--LRTAVLAPTRVVAAE 65
Query: 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625
+ L Y R+ + V +T +
Sbjct: 66 MAEALRGLPVRYQTSAV--------QREHQGNEIVDVMCH---ATLTHRLMSPNRVPNYN 114
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
L ++DE H SI AR + + ++AT P
Sbjct: 115 LFVMDEAHFTD------PASIAARGYIATKVELGEAAAIFMTATPPGTT----------- 157
Query: 686 KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE 745
F +S P+ Q I P + + + E + + FV S K
Sbjct: 158 ---DPFPDSNAPIHDLQDEI------PDRAWSSGYEWITE------YAGKTVWFVASVKM 202
Query: 746 TAKTARAIRD 755
+ A ++
Sbjct: 203 GNEIAMCLQR 212
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L ++ GF+ + IQ + + D VL A +G+GKT F+I +
Sbjct: 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKT--GTFSIAALQRID 77
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIII 1443
+ +A+ +AP LA + + + ++V G T+ D + L QI++
Sbjct: 78 TSVKAPQALMLAPTRELALQIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVV 136
Query: 1444 STPEK-WDALSRRWKQRKYVQQVSLFIIDE 1472
TP + +D + RR + ++ +FI+DE
Sbjct: 137 GTPGRVFDNIQRRRFR---TDKIKMFILDE 163
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 84/482 (17%), Positives = 166/482 (34%), Gaps = 92/482 (19%)
Query: 473 NEKLIK-ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVL 530
++++ K I+ M F G+T VQ + K LSS D+ ++ A TG GKT ++
Sbjct: 29 DKEIHKAITRM------EFPGLTP---VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLI 79
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNL-SNRLQMYDVKVRELSG 586
I Q L + D K V VAP + L + V + + L G
Sbjct: 80 PIFQHLINTKFDS----QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 587 DQTLTRQQIEE-----TQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEI-HLLHDNR 639
R + + I++ TP + D++ + S + + V ++DE LL
Sbjct: 136 GTDF-RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK--FFRFVDYKVLDEADRLLEIGF 192
Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFDNSYRP 697
LE+I + + ++I+ + SATL + + +A + L D +
Sbjct: 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252
Query: 698 VP--LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
+ Q + +K + +++ ++ +IF + K T+
Sbjct: 253 AHERIDQSVV--ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI--- 307
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVE 813
LK+ I H +T+ R +
Sbjct: 308 ---------------------------------LKNEFKKDLPILEFHGKITQNKRTSLV 334
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ---MLGR 870
F +LV T A G++ P +++ P ++ +GR
Sbjct: 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV---------PSELANYIHRIGR 381
Query: 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIESQFVSKLADQLNAEIVLGTVQNAK 929
R G ++ EL + L + + I Q + ++++ +E++ + +
Sbjct: 382 TAR--SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPE 439
Query: 930 EA 931
+
Sbjct: 440 DI 441
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 74/363 (20%), Positives = 126/363 (34%), Gaps = 96/363 (26%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q A++ D IL A G GKT V+ L+++ N + + + P
Sbjct: 47 IQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKLNK--------IQALIMVP 97
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDII 611
+ L ++VV L + +G L + E I+V TP + D+
Sbjct: 98 TRELALQTSQVVRTLGKHC---GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA 154
Query: 612 TRKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSA 668
+RK D L I+DE +L +R ++E I + + + SA
Sbjct: 155 SRKVAD---LSDCSLFIMDEADKML--SRDFKTIIEQI-------LSFLPPTHQSLLFSA 202
Query: 669 TLPNYEDVALF--------LRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720
T P V F +NL + L + QY V++ Q+ +N
Sbjct: 203 TFP--LTVKEFMVKHLHKPYEINLMEEL--------TLKGITQYY-AFVEER-QKLHCLN 250
Query: 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
L + K+ +Q +IF +S + L + + + S
Sbjct: 251 TL-FSKLQI----NQAIIFCNSTNRV--------------ELLAKKITDLGYSCYYS--- 288
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
HA M + +R V F G V+ LV + L G+++ A
Sbjct: 289 --------------------HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328
Query: 841 VII 843
V+I
Sbjct: 329 VVI 331
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFA--ILRNHQ 1383
L + + A+ GF+ IQ +V + N + N++ A TGSGKT + FA ++ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKT--ASFAIPLI---E 67
Query: 1384 KASETGVMRAVYIAPLEALA---KERYRDWEI-KFGQGLGMRVVELTGETAMD--LKLLE 1437
+E + A+ + P LA + EI +++ ++ G A+ +K L+
Sbjct: 68 LVNENNGIEAIILTPTRELAIQVAD-----EIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 1438 KGQIIISTP 1446
I++ TP
Sbjct: 123 NANIVVGTP 131
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 89/360 (24%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q R + D +L A +G GKT + LQ++ + + + +AP
Sbjct: 47 IQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTSVK--------APQALMLAP 97
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK-WDIIT 612
+ L + +VV L+ + D+KV G + + + QI+V TP + +D I
Sbjct: 98 TRELALQIQKVVMALAFHM---DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQ 154
Query: 613 RKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSAT 669
R+ T +K+ I+DE +L + G + I ++V LSAT
Sbjct: 155 RRRFR---TDKIKMFILDEADEML--SSGFKEQIYQI-------FTLLPPTTQVVLLSAT 202
Query: 670 LPNY-EDVA-LFLR----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723
+PN +V F+R + ++K + + Q Y + V++ +++ + DL
Sbjct: 203 MPNDVLEVTTKFMRNPVRILVKKDELTLEG------IKQFY--VNVEEEEYKYECLTDL- 253
Query: 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
Y+ + Q +IF ++R++ + L L+ D + +
Sbjct: 254 YDSISV----TQAVIFCNTRRKV--------------EELTTKLRNDKFTVSAI------ 289
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ + + +R + F G ++L+ST LA G+++ +++I
Sbjct: 290 -----------------YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI-----LR 1380
L + L + ++ IQ Q + D VL AA TGSGKT+ F + L
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD-VLGAAKTGSGKTLA--FLVPVLEALY 88
Query: 1381 NHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK 1438
Q S G+ + I+P LA + + K G+ + G + + +
Sbjct: 89 RLQWTSTDGL-GVLIISPTRELAYQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINN 146
Query: 1439 GQIIISTP 1446
I++ TP
Sbjct: 147 INILVCTP 154
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 73/364 (20%), Positives = 144/364 (39%), Gaps = 95/364 (26%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q R + D ++ A +G GKT ++ILQQ+ L+ + + +AP
Sbjct: 66 IQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDLK--------ATQALVLAP 116
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEK-WDI 610
+ L + +VV L + + G + + Q+E IIV TP + +D+
Sbjct: 117 TRELAQQIQKVVMALGDYM---GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM 173
Query: 611 ITRKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLS 667
+ R+ + +K+ ++DE +L +RG + I + + ++V LS
Sbjct: 174 LNRRYLS---PKYIKMFVLDEADEML--SRGFKDQIYDI-------FQKLNSNTQVVLLS 221
Query: 668 ATLPN--YEDVALFLR----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721
AT+P+ E F+R + ++K + + Q Y I V++ + + D
Sbjct: 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEG------IRQFY--INVEREEWKLDTLCD 273
Query: 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781
L YE + Q +IF+++R++ D L +
Sbjct: 274 L-YETLTI----TQAVIFINTRRKV--------------DWLTEKMHAR----------- 303
Query: 782 DMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
F + H M + +R ++ F G +VL++T LA G+++
Sbjct: 304 --------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349
Query: 840 TVII 843
+++I
Sbjct: 350 SLVI 353
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
VQ + D +++ A +G GKT V L L L +I+ +AP
Sbjct: 50 VQLKAIPLGRCGLD-LIVQAKSGTGKTCVFSTIALDSLVLENLS--------TQILILAP 100
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK-WDIIT 612
+ + + V+ + + M ++ G L++ ++++ I V +P + +I
Sbjct: 101 TREIAVQIHSVITAIGIK--MEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE 158
Query: 613 RKSGDRTYTQLVKLLIIDEI-HLLHDNRGPVLESIVARTVRQIET----TKEHIRLVGLS 667
+ ++L I+DE LL G E QI +++ +S
Sbjct: 159 LDYLN---PGSIRLFILDEADKLL--EEGSFQE--------QINWIYSSLPASKQMLAVS 205
Query: 668 ATLP 671
AT P
Sbjct: 206 ATYP 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2114 | |||
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.98 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.98 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.98 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.97 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.96 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.96 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.96 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.96 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.96 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.96 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.96 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.95 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.95 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.95 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.95 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.95 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.95 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.95 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.95 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.95 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.92 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.91 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.91 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.91 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.91 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.9 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.9 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.89 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.89 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.89 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.89 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.89 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.89 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.88 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.88 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.88 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.88 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.88 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.88 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.88 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.88 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.87 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.87 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.87 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.87 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.87 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.87 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.87 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.87 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.87 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.86 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.86 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.86 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.86 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.86 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.86 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.85 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.85 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.84 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.84 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.84 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.84 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.84 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.84 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.8 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.8 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.78 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.73 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.73 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.72 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.72 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.72 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.71 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.71 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.7 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.7 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.7 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.69 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.69 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.69 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.69 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.69 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.69 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.67 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.66 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.65 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.65 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.65 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.65 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.64 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.64 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.64 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.64 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.63 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.6 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.34 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.31 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.53 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.5 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.49 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.1 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.09 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.9 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.75 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.57 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.49 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.48 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.34 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.29 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.19 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.18 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.17 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.11 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.01 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.98 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.91 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.84 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.83 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.71 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.46 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.27 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 95.23 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.11 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.04 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.55 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.45 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 94.39 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 94.36 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.93 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 93.82 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 93.67 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 93.56 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 93.5 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 93.44 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 93.18 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 93.13 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 92.43 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 92.27 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 92.26 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 92.13 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.08 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 92.06 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 92.01 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 91.95 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 91.79 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.78 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.77 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 91.71 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 91.64 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 91.63 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 91.39 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.26 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 91.17 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 91.12 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 91.06 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 90.94 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 90.86 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 90.75 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 90.56 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 90.46 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 90.44 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 90.4 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 90.36 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 90.27 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 90.25 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 90.18 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 90.12 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 89.92 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 89.91 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.8 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 89.79 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.46 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 89.44 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 89.3 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 89.25 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 89.19 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 89.16 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 89.14 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 89.03 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 89.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 88.96 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 88.94 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 88.79 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 88.76 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 88.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 88.53 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 88.49 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 88.43 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 88.4 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 88.35 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 88.29 | |
| 2kz3_A | 83 | Putative uncharacterized protein RAD51L3; RAD51D, | 88.02 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 87.96 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 87.94 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 87.94 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 87.81 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 87.7 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 87.55 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 87.49 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 87.44 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 87.27 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 87.21 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 87.08 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 86.97 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 86.95 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 86.92 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 86.81 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 86.75 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 86.69 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 86.45 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 86.41 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 86.36 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 86.36 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 86.29 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 86.25 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 86.18 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 86.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 85.66 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 85.62 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 85.53 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 85.51 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 85.45 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 85.34 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 85.34 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 85.3 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 85.28 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 85.12 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 85.11 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 85.08 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 85.06 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 85.05 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 84.95 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 84.8 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 84.77 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 84.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 84.64 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 84.58 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 84.57 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 84.54 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 84.42 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 83.96 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 83.62 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 83.44 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 83.38 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 83.35 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 83.32 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 83.3 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 83.11 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 83.06 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 82.87 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 82.85 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 82.06 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 82.04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 81.8 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 81.66 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 81.57 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 81.43 | |
| 1u9l_A | 70 | Transcription elongation protein NUSA; escherichia | 81.35 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 81.29 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 81.28 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 81.26 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 81.18 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 81.18 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 81.15 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 81.07 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 81.0 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 80.86 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 80.75 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 80.74 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 80.55 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 80.44 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 80.44 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 80.35 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 80.21 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 80.2 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 80.04 |
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-285 Score=3013.74 Aligned_cols=1678 Identities=63% Similarity=1.084 Sum_probs=1617.4
Q ss_pred cCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCC
Q 000129 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2114)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2114)
.+|++.+|||++.|+||+|+|+|+|+.||+||.+..+++|||++||++...+...++.++++++||+|++.+|+||++||
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 81 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLN 81 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCC
T ss_pred CCccceecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcCCCCCCC
Confidence 46889999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000129 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2114)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (2114)
++|+++++.++++++|+|+|||||||||++|+++|++.+.++....+.....++|+|||+|+||||+|+++.|+++++.+
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988766556666778899999999999999999999999999
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
|++|+.++||.+.+++....++|+|||||+||.++|++.+..+++.+++|||||+|+++|+||+++|.+++|+++.....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999988888889999999999999999998777788999999999999999999999999999999988888
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000129 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2114)
Q Consensus 658 ~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (2114)
+.++|+||||||+||++++++||++.+..++++|+.++||+|+.++++++.......+...+++.+++.+.+...++|+|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 89999999999999999999999988778899999999999999999999988888888889999999888888889999
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHh
Q 000129 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2114)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2114)
|||+||+.|+.+|+.|.+..........+........+.+........+..|++++++||++|||||++++|..||++|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999988777777777777677777788888888899999999999999999999999999999999
Q ss_pred CCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
+|.++|||||+|||||||+|+++|||++++.||+..|++.++|+.+|+||+|||||+|+|..|.+|+++++++..+|.++
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHH
Q 000129 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977 (2114)
Q Consensus 898 l~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~ 977 (2114)
++++.||||+|...+.|+||+||++|++.+.+++++||++||+|+||.+||.+|++..+....|+.+++++.++|++++.
T Consensus 482 l~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~ 561 (1724)
T 4f92_B 482 LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL 561 (1724)
T ss_dssp TTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988778889999999999999999
Q ss_pred HHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhc
Q 000129 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD 1057 (2114)
Q Consensus 978 ~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~ 1057 (2114)
.|+++|||.+|++++.+.+|++||+||+|||++.||+.|++.+++.+++.++|+++|+|+||+++++|++|+.+|++|++
T Consensus 562 ~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~ 641 (1724)
T 4f92_B 562 MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE 641 (1724)
T ss_dssp HHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccc
Q 000129 1058 RVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137 (2114)
Q Consensus 1058 ~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~ 1137 (2114)
++|+|+++++++++.|+|+|||+|||++++++|+|.+|+.||.|+|.||+||++|||..+||+..+.++++|||||++||
T Consensus 642 ~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~ 721 (1724)
T 4f92_B 642 RVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721 (1724)
T ss_dssp HSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhcCCceeEEEEEeeccCceEEEEE
Q 000129 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217 (2114)
Q Consensus 1138 w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~~l~~~l 1217 (2114)
|++++||+|||++|++++++|+++|++|+++.++++.++++++++|++|+.|++++++||++++++++||||+++++|++
T Consensus 722 w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~ 801 (1724)
T 4f92_B 722 WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL 801 (1724)
T ss_dssp CTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEE
T ss_pred CCCCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcccc
Q 000129 1218 TITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2114)
Q Consensus 1218 ~i~~~f~~~~~~~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~ 1297 (2114)
+|+|+|.|++++||..|+|||||||++++.|||+++|.+++++.+++|.++|++|+.+|+||+|+|+++||+|+||++.+
T Consensus 802 ~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~ 881 (1724)
T 4f92_B 802 TITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQL 881 (1724)
T ss_dssp EEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEE
T ss_pred EEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHH
Q 000129 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEF 1376 (2114)
Q Consensus 1298 ~is~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l 1376 (2114)
||+|+|+++|+++|++|+++|++|+|+++|+++.++++|. +|++|||+|++||+.+|++++|++|+||||||||++|++
T Consensus 882 ~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 882 PVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp EEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH
T ss_pred eeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHH
Confidence 9999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhh
Q 000129 1377 AILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456 (2114)
Q Consensus 1377 ~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~ 1456 (2114)
||++.+.+ .+++ ++|||+|+|+||.|++++|+++|++..|++|+.++|+...+.+.+.+++|+|||||+|+.++|+|
T Consensus 962 ail~~l~~-~~~~--kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQ-SSEG--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHH-CTTC--CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHh-CCCC--EEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCc
Confidence 99999987 3444 89999999999999999999999988899999999999888888888999999999999999999
Q ss_pred cccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCC
Q 000129 1457 KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (2114)
Q Consensus 1457 ~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~r 1536 (2114)
..+..++++++||+||+|++++++|+.+|.++++|+++..+.+.++|+|+||||++|++++++|++.....+++|.+++|
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R 1118 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1118 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC
T ss_pred ccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccc
Q 000129 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2114)
Q Consensus 1537 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2114)
|+|++.++.+++..+...++..+.++.+..+..+ ..++|+||||+||++|+.+|..|...+........ ++....+++
T Consensus 1119 PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~l 1196 (1724)
T 4f92_B 1119 PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR-FLHCTEKDL 1196 (1724)
T ss_dssp SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT-TBCSCHHHH
T ss_pred CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhh-hhcccHHHH
Confidence 9999999999999999999999999999888777 88899999999999999999999999887777666 777888888
Q ss_pred hhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCC
Q 000129 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2114)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~ 1696 (2114)
...+..+.+..|.+++..||++|||||++.+|..|+++|++|.++|||||++++||||+|++.|||+||++|+++.+++.
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~ 1276 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEE
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH---------------------------------------
Q 000129 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL--------------------------------------- 1737 (2114)
Q Consensus 1697 ~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l--------------------------------------- 1737 (2114)
|+++.+|+||+|||||+|+|..|.|+++|++.++++|++++
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987
Q ss_pred -----HhccCCCCccccCCCccchHHHHHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcC
Q 000129 1738 -----RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1812 (2114)
Q Consensus 1738 -----Rl~~nP~~y~l~~~s~~~l~~~lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~ 1812 (2114)
|+.+||+||++.+.++.+++++++++|+++++.|++++||++++++++.||++|++||+|||+|.|++.|..+++
T Consensus 1357 Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1436 (1724)
T 4f92_B 1357 TFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLN 1436 (1724)
T ss_dssp SSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred hHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 788999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 000129 1813 PKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLL 1892 (2114)
Q Consensus 1813 ~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp~~l~~D~~~il~ 1892 (2114)
..+++.++|++||.|+||.++|+|++|+..+.+|++++|+++....+.+||.|+++||||||+|+++|.+|.+|+..|++
T Consensus 1437 ~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~ 1516 (1724)
T 4f92_B 1437 AKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILS 1516 (1724)
T ss_dssp TTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHH
Q 000129 1893 SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 1972 (2114)
Q Consensus 1893 ~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~ 1972 (2114)
++.||++||+|++++.||+++++++|+|+|||+||+|++++||+|||||++.++++|.++| |+|++||+++++++++
T Consensus 1517 ~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~g---i~t~~dl~~~~~~~~~ 1593 (1724)
T 4f92_B 1517 KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERN 1593 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHT---CCSHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEEC
Q 000129 1973 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDT 2052 (2114)
Q Consensus 1973 ~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~ 2052 (2114)
.+|++++.++++|++|||+||+|+|++++.+.+.+.+|++++++|+++|+++. .+.|+||+||+.|.|+||+||||.
T Consensus 1594 ~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~p~~k~e~w~~vvg~~ 1670 (1724)
T 4f92_B 1594 ALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEGWWVVIGDA 1670 (1724)
T ss_dssp TSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCC---CSCCCCTTSCSCCCCCEEEEEEET
T ss_pred HHHCCChHHHHHHHHHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCC---CCeeecCCCCCCCccCEEEEEEEC
Confidence 99999999999999999999999999999998899999999999999996532 257999999999999999999999
Q ss_pred CCCeEEEEEEeecccccEEEEEEEecCCCCceEEEEEEEecCccccCeEEEEEEE
Q 000129 2053 KTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVD 2107 (2114)
Q Consensus 2053 ~~~~L~~~krv~~~~~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 2107 (2114)
++|+|+++||+++.+...++++|++| .+|.|+|++|+|||||+||||||+|+++
T Consensus 1671 ~~~~l~~~kr~~~~~~~~~~l~f~~p-~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1671 KSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp TTTEEEEEEEECCSSEEEEEEEEECC-SSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCceEEEEEEeC-CCCceeEEEEEEecCccccceeEEEecC
Confidence 99999999999999988999999999 7899999999999999999999999874
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-111 Score=1205.33 Aligned_cols=802 Identities=29% Similarity=0.479 Sum_probs=731.0
Q ss_pred cccCCCCh-hhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEE
Q 000129 477 IKISEMPE-WAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554 (2114)
Q Consensus 477 ~~i~~lp~-~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil 554 (2114)
.+++.|+. .+...| .+|++|||+|+++|+.++++++|++++||||||||++|++||++.+.+.. +.++|
T Consensus 906 lp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kav 976 (1724)
T 4f92_B 906 LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCV 976 (1724)
T ss_dssp CBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEE
T ss_pred CCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEE
Confidence 46677744 445555 47999999999999999999999999999999999999999999998652 33799
Q ss_pred EEcccHHHHHHHHHHHHHhhcc-CCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 555 YVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 555 ~iaP~raLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
||+|+||||.|+++.|.++++. +|++|+.++|+...+.+....++|+|||||+|+.++|++....+++++++||+||+|
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 9999999999999999988864 799999999998876666778999999999999999998877889999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchh
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
++++.||+.++.+++++.......+.++|+|+||||+||++++++||+... .+.+.|.+++||+|+..++.++......
T Consensus 1057 ~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1057 LIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred hcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 999999999999999998888778889999999999999999999999874 6788999999999999999999888888
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.++..++..++..+.....++++||||+||+.|+.+|..|............++.. ..+.+........+..|++++
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc---cHHHHHHHHhhcccHHHHHHH
Confidence 88888898899888888888999999999999999999998776554443344322 233444556677889999999
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.+||++|||||++.+|..|+++|++|.++|||||+++|||||+|+++|||.+++.||+...++.++++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCC
Q 000129 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~ 953 (2114)
+|+|..|.|+++|...+..+|.+++++++|+||+|...+.+++|+||+.|++.+.+++++|++|||+|+|+.+||.+|++
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l 1372 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTC
T ss_pred CCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHh
Q 000129 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLF 1033 (2114)
Q Consensus 954 ~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~ 1033 (2114)
... ....+++++.++|+++++.|.++|||..++ ++.+.+|++|++||+|||+|.|++.|...+++.++..++|+++
T Consensus 1373 ~~~---~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il 1448 (1724)
T 4f92_B 1373 QGI---SHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1448 (1724)
T ss_dssp SCC---SHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred ccc---chhhHHHHHHHHHHHHHHHHHHCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHh
Confidence 763 445688899999999999999999999875 4679999999999999999999999999999999999999999
Q ss_pred hCCccCCCCcCChhHHHHHHHHhccCCCCCCCC-CCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHH
Q 000129 1034 SLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112 (2114)
Q Consensus 1034 s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~-~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~e 1112 (2114)
|.+.||.++++|++|+..+.+|..++|+++.+. +++|+.|+++|||||+||++++ .++.+|+..|+++|.||++|++|
T Consensus 1449 ~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d 1527 (1724)
T 4f92_B 1449 SNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVD 1527 (1724)
T ss_dssp HTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987764 7899999999999999999997 68899999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc-CchhHHHHH
Q 000129 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR-FPKMGRTLH 1190 (2114)
Q Consensus 1113 i~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 1190 (2114)
+|..+||...+..+++|+|||.+++|++++||+|+|||+++++++|.++|+ ++.++.++++++++.+++ .++++.+|+
T Consensus 1528 ~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~ 1607 (1724)
T 4f92_B 1528 VLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVA 1607 (1724)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 789999999999999997 478899999
Q ss_pred HHHhcCCceeEEEEEeecc----CceEEEEEEEccCCccCCCCCCcc------ccEEEEEEeCCCCeEEEEEeeeeeecc
Q 000129 1191 KFVHQFPKLILAAHVQPIT----RTVLKVELTITPDFLWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQY 1260 (2114)
Q Consensus 1191 ~~~~~~P~~~~~~~~~~~~----~~~l~~~l~i~~~f~~~~~~~~~~------~~~wi~v~d~~~~~i~~~~~~~l~~~~ 1260 (2114)
+++++||++++++.+++.+ +..+.|.++++.+...+..+|++. |.||++|+|.+++.|+++++++++++
T Consensus 1608 ~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~- 1686 (1724)
T 4f92_B 1608 RFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK- 1686 (1724)
T ss_dssp HHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSE-
T ss_pred HHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCCeEEEEEEEecCCC-
Confidence 9999999999999997654 567788888888777777777654 55999999999999999999998773
Q ss_pred cccccEEEEEeccCCCCCCeEEEEEeccccccCcccccccc
Q 000129 1261 IEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2114)
Q Consensus 1261 ~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~ 1301 (2114)
...+++|++| +|++++|.++++||+|+||+.+..+++
T Consensus 1687 --~~~~l~f~~p--~~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1687 --AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp --EEEEEEEECC--SSSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred --ceEEEEEEeC--CCCceeEEEEEEecCccccceeEEEec
Confidence 4567899998 688999999999999999998776654
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-81 Score=851.17 Aligned_cols=656 Identities=26% Similarity=0.384 Sum_probs=537.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++++.| .||.+|+|+|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|+
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P~ 84 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTPL 84 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECSC
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCeEEEEeCc
Confidence 589999988 6899999999999998677788999999999999999999999987642 2489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
|+||.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.+.. ..+++++++|||||+|++.+ .
T Consensus 85 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~--~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 85 RALTNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR--PEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHC--CGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCC--hhHhhccCEEEEechhhcCCcc
Confidence 999999999994 5667799999999998877666678999999999998887764 25688999999999999988 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC--------
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-------- 710 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-------- 710 (2114)
||+.++.++.++. +.|+|+||||++|.++++.|++.. .+...+||+|+...+......
T Consensus 162 ~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 162 RGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp THHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEE
T ss_pred cchHHHHHHHhcc--------cCcEEEEcCCCCCHHHHHHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeec
Confidence 9999999988773 789999999999999999999753 356788999988765422100
Q ss_pred -c-hhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc-----
Q 000129 711 -K-PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----- 782 (2114)
Q Consensus 711 -~-~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~----- 782 (2114)
. ....+. .....+..+.+. ..++++||||+|+++++.++..|.+..... ++.. .....+.....
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~~--~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 228 KDNTTKKVH-GDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLDE--NALSEILKQLDDIEEG 299 (715)
T ss_dssp TTSCEEEEE-SSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCCH--HHHHHHHHHHHTCCSS
T ss_pred Ccchhhhcc-cchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCCh--HHHHHHHHHHHHhhhc
Confidence 0 000000 001122333332 246899999999999999999998753220 1110 11111111111
Q ss_pred -ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCc-cccCC
Q 000129 783 -MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA-WTELS 860 (2114)
Q Consensus 783 -~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~-~~~~s 860 (2114)
...+..|+++++.||++|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++..||+..+. +.++|
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 1223568888899999999999999999999999999999999999999999999999999999999964432 47889
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEcCCCc-H-HHHHHhh-cCCCcccchhhH--hhHHHHHHHHhhccccChHHHHHHH
Q 000129 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-RYYLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWI 935 (2114)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e-~-~~~~~ll-~~~~pies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl 935 (2114)
..+|+||+|||||+|+|..|.||+++++.+ . .++.+++ ..+.|++|++.. .+.++++++++.|++.+.+++.+|+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l 459 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFA 459 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHH
Confidence 999999999999999999999999998876 3 3455554 578899999976 7999999999999999999999999
Q ss_pred HhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHH
Q 000129 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (2114)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~ 1015 (2114)
++||+|+++.. ..+++|+..|.+.|+|+.+ ++.+.+|++|+++|+||++|.++++
T Consensus 460 ~~~~~~~~~~~-----------------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~ 514 (715)
T 2va8_A 460 YESLLAKQLVD-----------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADI 514 (715)
T ss_dssp TTSSSCHHHHH-----------------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHH
T ss_pred HhhHHHhhcch-----------------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHH
Confidence 99999876321 1278899999999999865 3568999999999999999999999
Q ss_pred HHhhcCC--CCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhcc------CCCCCCCC-CCC--hhHHHHHHHHHHHhc
Q 000129 1016 YNEHLKP--TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKES-LEE--PSAKINVLLQAYISQ 1084 (2114)
Q Consensus 1016 ~~~~l~~--~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~-~~~--~~~K~~~llq~~i~~ 1084 (2114)
|+.+++. ..+..++|.++|+++||.++++|++|+.+|.+++.+ .+.|+++. +++ ++.|+++|||+|||+
T Consensus 515 ~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~ 594 (715)
T 2va8_A 515 IRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDE 594 (715)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcC
Confidence 9998877 478899999999999999999999999999998753 23344331 222 789999999999999
Q ss_pred ccCCC----Ccc-cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHH
Q 000129 1085 LKLEG----LSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 1159 (2114)
Q Consensus 1085 ~~~~~----~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~ 1159 (2114)
.+++. |++ .+|+.+++++|.||++|+++||...||...+..++.|++||++|+|++.+||+||||||+.++|+|+
T Consensus 595 ~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~ 674 (715)
T 2va8_A 595 VDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLY 674 (715)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHH
Confidence 99865 888 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-chhhhccCChHHhhhhhcCchhHHHHHH-HHhcCCce
Q 000129 1160 KKDF-AWERYYDLSPQELGELIRFPKMGRTLHK-FVHQFPKL 1199 (2114)
Q Consensus 1160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~P~~ 1199 (2114)
++|+ ++.++. .+++++.++++ ++.|++|++ +.+++|.+
T Consensus 675 ~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 675 NNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC--
T ss_pred HcCCCCHHHHh-CCHHHHHHHhC-hhHHHHHHHHHHHhhccC
Confidence 9998 567777 79999999999 999999998 77778865
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-81 Score=852.34 Aligned_cols=653 Identities=25% Similarity=0.368 Sum_probs=537.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++++.| .||++|+|+|+++++.++ .++|++++||||||||++|.+++++.+..+ .+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CcEEEEeCc
Confidence 456667777 689999999999999854 567899999999999999999999987642 379999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++||.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|++.+ .
T Consensus 78 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh--hHHhhcCEEEEeeeeecCCCC
Confidence 999999999994 56677999999999987766666789999999999988887643 5688999999999999988 7
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeecc---Cchh--
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV---KKPL-- 713 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~---~~~~-- 713 (2114)
||+.++.+++++.+ ..++.|+|+||||++|.++++.|++.. .+...+||+|+...+..... ....
T Consensus 155 r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred cccHHHHHHHHHHh----cCcCceEEEECCCcCCHHHHHHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchh
Confidence 99999999988753 356899999999999999999999743 35678899998775532110 0000
Q ss_pred --HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 714 --QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 714 --~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.... +...+.+.+ ..++++||||+|+++++.++..|.+.... ++..+.....++ .......+..|.+
T Consensus 225 ~~~~~~-~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i~-~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 225 TSRRVK-FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAIL-EENEGEMSRKLAE 293 (702)
T ss_dssp EEEECC-HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHHH-TTCCSHHHHHHHH
T ss_pred hhhhhh-HHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHh------hcChHHHHHHHH-hhccccccHHHHH
Confidence 0000 122222222 24789999999999999999999876422 122212112221 1222334566888
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
+++.|+++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+++..|| |.+.++|..+|+||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd---~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES---SSEEECCHHHHHHHHTTB
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeC---CCCCcCCHHHHHHHhhhc
Confidence 88999999999999999999999999999999999999999999999999999999998 236788999999999999
Q ss_pred CCCCCCCceEEEEEcCCCcHHHHH-Hhh-cCCCcccchhhH--hhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccC
Q 000129 872 GRPQYDSYGEGIIITGHSELRYYL-SLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~e~~~~~-~ll-~~~~pies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2114)
||+|+|..|.|+++++..+...+. +++ +.+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++. .
T Consensus 371 GR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~ 449 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I 449 (702)
T ss_dssp SCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C
T ss_pred CCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H
Confidence 999999999999999998866544 344 578899999986 79999999999999999999999999999998753 1
Q ss_pred CcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCC-CCH
Q 000129 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-MGD 1026 (2114)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~-~~~ 1026 (2114)
+..+.+++|+..|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|+.+++.. .+.
T Consensus 450 -------------------~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (702)
T 2p6r_A 450 -------------------SLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSD 507 (702)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCH
T ss_pred -------------------HHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCH
Confidence 1236789999999999999865 56899999999999999999999999999886 677
Q ss_pred HHHHHHhhCCccCCCCcCChhHHHHHHHHhcc-----CCCC-CCCC-CC--ChhHHHHHHHHHHHhcccCCC----Ccc-
Q 000129 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-----VPIP-VKES-LE--EPSAKINVLLQAYISQLKLEG----LSL- 1092 (2114)
Q Consensus 1027 ~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~-----~~~~-~~~~-~~--~~~~K~~~llq~~i~~~~~~~----~~l- 1092 (2114)
.++|.++|+++||.++++|++| .++.+++.+ .++| +++. ++ .++.|+++|||+|||+.+++. |++
T Consensus 508 ~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~ 586 (702)
T 2p6r_A 508 IGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIA 586 (702)
T ss_dssp HHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred HHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCc
Confidence 8999999999999999999999 778777654 2334 2221 11 188999999999999999753 776
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccC
Q 000129 1093 TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDL 1171 (2114)
Q Consensus 1093 ~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~ 1171 (2114)
.+|+.+++++|.||++|+++||...||. .+++|++||.+|+|++.+||+|+|||+++++++|+++|+ ++.++.++
T Consensus 587 ~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 587 PGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhh
Confidence 6999999999999999999999999997 778899999999999999999999999999999999998 67777777
Q ss_pred ChHHhhhhhcCchhHHHHHHHHhcCCceeEEEE
Q 000129 1172 SPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (2114)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~ 1204 (2114)
+ +++.++++ +++|++|++.++ +|.+++++.
T Consensus 663 ~-~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 663 R-EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp H-HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred h-HHHHHHhC-hhHHHHHHHhcC-CCccCcchh
Confidence 8 99999999 999999999999 999998753
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-80 Score=844.40 Aligned_cols=651 Identities=25% Similarity=0.366 Sum_probs=537.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++++.| .||.+|+|+|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEEEEEcC
Confidence 3688999888 6899999999999998666788999999999999999999999888643 238999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (2114)
+++||.|++++|+ .+..+|++|+.++|+.....+....++|+|+|||+|+.+.+... .+++++++|||||+|++.+
T Consensus 77 ~raLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 77 LKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp SGGGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCT
T ss_pred cHHHHHHHHHHHH-HHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcCh--hhhhcCCEEEEECCcccCCC
Confidence 9999999999995 56667999999999988877777789999999999988887743 5688999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEee-----ccCch
Q 000129 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-----QVKKP 712 (2114)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-----~~~~~ 712 (2114)
.||+.++.++.++. .++|+|+||||++|.++++.|++.. .+...+||+++...+..- .....
T Consensus 154 ~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 154 DRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp TTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred cccHHHHHHHHHhh-------cCCeEEEEcCCcCCHHHHHHHhCCc------ccCCCCCCCcceEEEEeCCeeeccccch
Confidence 79999999988873 2799999999999999999999754 356788999987654321 11000
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----cccCcch
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----DMVKSND 788 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~----~~~~~~~ 788 (2114)
.........+.+. ...++++||||+|+++|+.++..|.+.... ++. ......+.... ....+..
T Consensus 221 -~~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~------~~~--~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 221 -DRFSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKS------LLT--KPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp -EECSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGG------GSC--HHHHHHHHHHHHTSCSCHHHHH
T ss_pred -hhhhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHH------hcC--hhhHHHHHHHHHHHhcccchHH
Confidence 0001111222221 124689999999999999999999876422 111 01111111111 1123345
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
|.++++.||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||++++.|| .. ++.++|..+|+||+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~-g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DF-GMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SS-SCEECCHHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeec-CC-CCccCCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999 22 36789999999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHH-HHHhh-cCCCcccchhhH--hhHHHHHHHHhhccccChHHHHHHHHhhHHHHhh
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRY-YLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~-~~~ll-~~~~pies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2114)
|||||+|+|..|.||+++++.+... +.+++ +.+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~ 446 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQR 446 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHC
T ss_pred hhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhc
Confidence 9999999999999999999887654 44455 577899999976 7999999999999999999999999999999885
Q ss_pred ccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCC-
Q 000129 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT- 1023 (2114)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~- 1023 (2114)
.. ..++.+.++++++.|.+.|+|..+. ++.+.+|++|++||+||++|.|+++|+.+++..
T Consensus 447 ~~------------------~~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 507 (720)
T 2zj8_A 447 KD------------------TYSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVV 507 (720)
T ss_dssp SC------------------CHHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cc------------------hHHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 31 1234578999999999999998322 366899999999999999999999999988773
Q ss_pred --CCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhcc------CCCCCCCCCCC-------hhHHHHHHHHHHHhcccCC
Q 000129 1024 --MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKESLEE-------PSAKINVLLQAYISQLKLE 1088 (2114)
Q Consensus 1024 --~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~~~~-------~~~K~~~llq~~i~~~~~~ 1088 (2114)
.+..++|.++|+++||.++++|++|+.+|.+++.+ .++|++.+..+ ++.|+++|||+|||+.+++
T Consensus 508 ~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~ 587 (720)
T 2zj8_A 508 KDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG 587 (720)
T ss_dssp HSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHH
Confidence 67789999999999999999999999999988632 45676654233 7899999999999999974
Q ss_pred ----CCcc-cchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC
Q 000129 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (2114)
Q Consensus 1089 ----~~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~ 1163 (2114)
+|++ .+|+.+++++|.||++|+++||...||...+..+..|++||.+++|++.+||.|+|||++.++++|+++|+
T Consensus 588 ~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~ 667 (720)
T 2zj8_A 588 EIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667 (720)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTC
T ss_pred HHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCC
Confidence 4666 69999999999999999999999999986555555599999999999999999999999999999999998
Q ss_pred -chhhhccCChHHhhhhhcCchhHHHHHHHH
Q 000129 1164 -AWERYYDLSPQELGELIRFPKMGRTLHKFV 1193 (2114)
Q Consensus 1164 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1193 (2114)
++.++.++++.++..+ +++|+++++.+
T Consensus 668 ~s~~dl~~~~~~~l~~~---~~~~~~i~~~~ 695 (720)
T 2zj8_A 668 RSIEDISQARPEELLKI---EGIGVKTVEAI 695 (720)
T ss_dssp CSHHHHHTCCHHHHHTS---TTCCHHHHHHH
T ss_pred CCHHHHHhCCHHHHHHh---HhHHHHHHHHH
Confidence 6788888899988877 56665555444
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=771.16 Aligned_cols=625 Identities=23% Similarity=0.333 Sum_probs=498.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|+++++.++..++|++++||||||||++|++++++.+... ++ +++|++|+++||.|++++|+ +|...
T Consensus 20 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~--~~l~i~P~raLa~q~~~~~~-~l~~~ 94 (720)
T 2zj8_A 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG--KAVYIVPLKALAEEKFQEFQ-DWEKI 94 (720)
T ss_dssp TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS--EEEEECSSGGGHHHHHHHTG-GGGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC--EEEEEcCcHHHHHHHHHHHH-HHHhc
Confidence 699999999999999555688899999999999999999999988752 34 99999999999999999996 67654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
|++++.++|+...+.+.+..++|+|+|||+|+.++++ ....++++++||+||+|++++ .+|+.++.++.+++
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---- 167 (720)
T 2zj8_A 95 -GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML---- 167 (720)
T ss_dssp -TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB----
T ss_pred -CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh----
Confidence 8999999999887766677889999999999999887 344589999999999999987 68999999988875
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 1576 (2114)
.+.|+|+||||++|++++++|++... +....||+|+...+.......+...........+..+...+.++++
T Consensus 168 ---~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (720)
T 2zj8_A 168 ---GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239 (720)
T ss_dssp ---TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCC
T ss_pred ---cCCeEEEEcCCcCCHHHHHHHhCCcc-----cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCC
Confidence 27999999999999999999998542 5667899998876532211111110001112223344444467899
Q ss_pred EEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhH----hhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI----DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1577 ~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~----~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
+||||+|++.|+.++..|...+....... ....+.... ....+..+.+.+..||++|||+|+..+|..++
T Consensus 240 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 240 ALIFVNMRRKAERVALELSKKVKSLLTKP------EIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHGGGSCHH------HHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHhcChh------hHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999976543200000 000111111 11234558888899999999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
+.|++|.++|||||+++++|||+|++.+||.++++|++. ...|.|..+|+||+|||||+|++..|.|++++.+.+.+.
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~--g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF--GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS--SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC--CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999999999999999999943 357899999999999999999889999999999887443
Q ss_pred -HHHHHHhccCCCCcccc---------------C--CCccch---------------HHHHHHHHHHHHHHHHHCCCcee
Q 000129 1733 -YKKFLRLTQNPNYYNLQ---------------G--VSHRHL---------------SDHLSELVENTISDLEASKCIII 1779 (2114)
Q Consensus 1733 -~~~~lRl~~nP~~y~l~---------------~--~s~~~l---------------~~~lselve~~l~~L~~~~~I~~ 1779 (2114)
+++++.-.-.|-...+. + .+...+ ++++++.+++++..|.+.|+|.+
T Consensus 392 ~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~ 471 (720)
T 2zj8_A 392 VMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEI 471 (720)
T ss_dssp HHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeE
Confidence 44444111111111100 0 011112 23456789999999999999986
Q ss_pred cCCCccccCcccchhhhcccCHhHHHHHHhhcCCC---CChhhHHHHHhcCccccCCCCCcchHHHHHHHHhh-------
Q 000129 1780 EEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK---TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH------- 1849 (2114)
Q Consensus 1780 ~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~---~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~------- 1849 (2114)
++++.+.+|++|+++|+||++|.|+++|..+++.. ....++|+++|.++||+.+++|++|+..+.++...
T Consensus 472 ~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~ 551 (720)
T 2zj8_A 472 SLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYF 551 (720)
T ss_dssp CTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSS
T ss_pred CCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccc
Confidence 65667999999999999999999999999988764 66789999999999999999999999988887532
Q ss_pred -CCcccCCCC--CCC--hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000129 1850 -QRFSFENPK--FTD--PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAM 1918 (2114)
Q Consensus 1850 -~p~~~~~~~--~~~--~~~K~~lLLqahlsr~~lp~------~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m 1918 (2114)
.|++..... +.. +++|+++|||+|++|.+++. .+.+|+.+++++|.||++||+++|...||.. +..+|
T Consensus 552 ~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~-~~~~l 630 (720)
T 2zj8_A 552 DDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE-IVDYL 630 (720)
T ss_dssp CCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG-GHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHH-HHHHH
Confidence 232221000 111 78999999999999998762 2689999999999999999999999999975 44566
Q ss_pred H-HHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 000129 1919 E-VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPN 1994 (2114)
Q Consensus 1919 ~-L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~ 1994 (2114)
. |+|||.||+|++++||+|||||++.++++|+++| ++|++||++++++++..+-++++++++++..++.++|.
T Consensus 631 ~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G---~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 631 ETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG---FRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp HHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcccccc
Confidence 5 9999999999999999999999999999999999 99999999999999998867999999999999999997
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-72 Score=768.44 Aligned_cols=616 Identities=24% Similarity=0.364 Sum_probs=491.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||.+|+|+|+++++.+++ ++|++++||||||||++|++++++.+.. ++ +++|++|+++||.|++++|+ ++...
T Consensus 22 g~~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~---~~--~~l~i~P~r~La~q~~~~~~-~~~~~ 94 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGEKYESFK-KWEKI 94 (702)
T ss_dssp ---CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHT-TTTTT
T ss_pred CCCCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHh---CC--cEEEEeCcHHHHHHHHHHHH-HHHhc
Confidence 689999999999999665 7789999999999999999999998765 44 89999999999999999995 67654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
|++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++||+||+|.+++ .+|+.++.++.+++..
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-- 169 (702)
T 2p6r_A 95 -GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-- 169 (702)
T ss_dssp -TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--
T ss_pred -CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc--
Confidence 8999999999887766667889999999999999887 344589999999999999987 5899999999998865
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH----HhcCHHHHHHHHHHhc
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM----QAMTKPTFTAIVQHAK 1572 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~ 1572 (2114)
+++.|+|+||||++|.+++++|++... +....||+|+..++.......+.... ..+. ....+...+.
T Consensus 170 --~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 240 (702)
T 2p6r_A 170 --NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK--FEELVEECVA 240 (702)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEECC--HHHHHHHHHH
T ss_pred --CcCceEEEECCCcCCHHHHHHHhCCCc-----ccCCCCCccceEEEeeCCeeeccCcchhhhhhhh--HHHHHHHHHh
Confidence 568999999999999999999998542 56678999988765432211111000 0000 2334444446
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCc--ccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA--EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~--~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
+++++||||++++.|+.++..|...+.. ++.... +.+........+..+.+.+..||++|||+|+.++|..
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAK-------YVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHT-------TCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHh-------hcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 7899999999999999999999765432 111110 0000001122456788888899999999999999999
Q ss_pred HHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
+++.|++|.++|||||+++++|||+|++.+||.++++||+. ..|.|..+|+||+|||||+|++..|.|++++.+.+.
T Consensus 314 v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 314 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999999999999999999933 689999999999999999998999999999998774
Q ss_pred HH-HHHHHHhccCCCC--cccc---------------C--CCccchHHHH-------------HHHHHHHHHHHHHCCCc
Q 000129 1731 EY-YKKFLRLTQNPNY--YNLQ---------------G--VSHRHLSDHL-------------SELVENTISDLEASKCI 1777 (2114)
Q Consensus 1731 ~~-~~~~lRl~~nP~~--y~l~---------------~--~s~~~l~~~l-------------selve~~l~~L~~~~~I 1777 (2114)
+. +++++ ...|.- -.+. + .+...+.+++ ++.+++++..|.+.|||
T Consensus 391 ~~~~~~~l--~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i 468 (702)
T 2p6r_A 391 EIAVKRYI--FGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMV 468 (702)
T ss_dssp HHHHHTTT--SSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHh--cCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCe
Confidence 43 22233 112211 1111 0 1122333332 46899999999999999
Q ss_pred eecCCCccccCcccchhhhcccCHhHHHHHHhhcCCC-CChhhHHHHHhcCccccCCCCCcchHHHHHHHHhh-CCcccC
Q 000129 1778 IIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK-TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH-QRFSFE 1855 (2114)
Q Consensus 1778 ~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~-~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~-~p~~~~ 1855 (2114)
..+ +.+.+|++|+++|+||++|.|+++|..+++.. .+..++|+++|.++||..+++|++|+.....+.+. .++ .+
T Consensus 469 ~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~~~~~~~-~~ 545 (702)
T 2p6r_A 469 VEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKEL-SY 545 (702)
T ss_dssp EES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGS-SC
T ss_pred eEC--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHHHHHHHHhccccc-cC
Confidence 875 46899999999999999999999999988875 56679999999999999999999994444444331 232 11
Q ss_pred CCCCCC-------hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000129 1856 NPKFTD-------PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1922 (2114)
Q Consensus 1856 ~~~~~~-------~~~K~~lLLqahlsr~~lp~------~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q 1922 (2114)
.+.+.+ ++.|+++|||||++|.+++. .+.+|++.++++|.||++||++|+...||. .+++|+|
T Consensus 546 ~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ 621 (702)
T 2p6r_A 546 YPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTE 621 (702)
T ss_dssp CCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHH
Confidence 112333 89999999999999998762 258999999999999999999999999997 6789999
Q ss_pred HHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEE
Q 000129 1923 MVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFE 2000 (2114)
Q Consensus 1923 ~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~ 2000 (2114)
||.||+|++++||+|||||++.++++|+++| ++|++||++++ +++..+++ +++.+.|.+.+. +|.+++++.
T Consensus 622 ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g---~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 622 RIKHGVKEELLELVRIRHIGRVRARKLYNAG---IRNAEDIVRHR-EKVASLIG--RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHHHTCCGGGHHHHTSTTCCHHHHHHHHTTT---CCSHHHHHHTH-HHHHHHHC--HHHHHHHHHHHH-HHC------
T ss_pred HHHcCCCcchHhhhcCCCCCHHHHHHHHHcC---CCCHHHHHhhh-HHHHHHhC--hhHHHHHHHhcC-CCccCcchh
Confidence 9999999999999999999999999999999 99999999999 88888887 899999999999 999998654
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-70 Score=746.83 Aligned_cols=622 Identities=24% Similarity=0.343 Sum_probs=489.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||.+|+|+|+++++.++..++|++++||||||||++|++++++.+.. .++ +++|++|+++||.|++++|+ ++...
T Consensus 27 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~--~il~i~P~r~La~q~~~~~~-~~~~~ 101 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGG--KAIYVTPLRALTNEKYLTFK-DWELI 101 (715)
T ss_dssp SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--EEEEECSCHHHHHHHHHHHG-GGGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCC--eEEEEeCcHHHHHHHHHHHH-HhhcC
Confidence 69999999999999966678899999999999999999999998875 244 99999999999999999995 67654
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC-CCCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~-~~g~~le~i~srl~~i~~ 1496 (2114)
|++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++||+||+|.+++ .+|+.++.++.+++
T Consensus 102 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~---- 174 (715)
T 2va8_A 102 -GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK---- 174 (715)
T ss_dssp -TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH----
T ss_pred -CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc----
Confidence 8999999999877766667889999999999999887 344589999999999999987 57888888888776
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccc------cchHH---HHHhcCHHHHHHH
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI------TNFEA---RMQAMTKPTFTAI 1567 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~------~~~~~---~~~~~~~~~~~~i 1567 (2114)
+.|+|+||||++|++++++|++... +....||+|+..++..... ..+.. .........+..+
T Consensus 175 ----~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 175 ----RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp ----TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred ----cCcEEEEcCCCCCHHHHHHHhCCCc-----cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 6899999999999999999998542 5567899998866532110 00100 0000123345555
Q ss_pred HHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCC-CcccchhhHhh------hhHHHHHHHhccceEeec
Q 000129 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW-PAEEVEPFIDN------IQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1568 ~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~-~~~~l~~~~~~------i~d~~L~~~l~~gV~~~H 1640 (2114)
...+..++++||||+|+++|+.++..|....... ++.. ....+....+. ..+..+.+.+..||++||
T Consensus 246 ~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h 319 (715)
T 2va8_A 246 LDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV------SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHH 319 (715)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS------CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEEC
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc------cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEEC
Confidence 5555778999999999999999999997754320 0000 00111111111 234678888899999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcC-cCCCCCHhHHHHhHcccCCCCCCCce
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN-AHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~-~~~~~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
|+|+..+|..+++.|++|.++|||||+++++|||+|++.+||.++++|+++.. ...|.|..+|+||+|||||+|++..|
T Consensus 320 ~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G 399 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIG 399 (715)
T ss_dssp TTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999994321 25799999999999999999988999
Q ss_pred EEEEEeecCcH--HHHHHHHHhccCCCC--ccccC----------------C-CccchHHHH----------HHHHHHHH
Q 000129 1720 KCVILCHAPRK--EYYKKFLRLTQNPNY--YNLQG----------------V-SHRHLSDHL----------SELVENTI 1768 (2114)
Q Consensus 1720 ~~iil~~~~~~--~~~~~~lRl~~nP~~--y~l~~----------------~-s~~~l~~~l----------selve~~l 1768 (2114)
.|++++.+.+. .++++++. ..|.- ..+.. . +...+.+++ ...+++++
T Consensus 400 ~~~~l~~~~~~~~~~~~~~l~--~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al 477 (715)
T 2va8_A 400 ESIVVVRDKEDVDRVFKKYVL--SDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAI 477 (715)
T ss_dssp EEEEECSCGGGHHHHHHHTTS--SCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred eEEEEeCCchHHHHHHHHHHc--CCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHH
Confidence 99999987763 34444441 22211 11111 0 112222322 23588999
Q ss_pred HHHHHCCCceecCCCccccCcccchhhhcccCHhHHHHHHhhcCC--CCChhhHHHHHhcCccccCCCCCcchHHHHHHH
Q 000129 1769 SDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP--KTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL 1846 (2114)
Q Consensus 1769 ~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~--~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L 1846 (2114)
..|.+.|+|..+ ++.+.+|++|+++|+||++|.|+++|..++.. .....++|+++|.++||..+++|++|+..+.++
T Consensus 478 ~~L~~~g~i~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~ 556 (715)
T 2va8_A 478 RWLLEHSFIKEE-GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIEL 556 (715)
T ss_dssp HHHHHTTSEEEC-SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHCcCEeec-CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHH
Confidence 999999999865 34689999999999999999999999988876 477899999999999999999999999999888
Q ss_pred Hh-hCCcccCCCCCCC-------hHHHHHHHHHHHhcCCCCCC-----Cc-hhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000129 1847 IH-HQRFSFENPKFTD-------PHVKANALLQAHFSRQQVGG-----NL-KLDQEEVLLSASRLLQAMVDVISSNGWLS 1912 (2114)
Q Consensus 1847 ~~-~~p~~~~~~~~~~-------~~~K~~lLLqahlsr~~lp~-----~l-~~D~~~il~~a~rLl~a~vdi~~~~g~l~ 1912 (2114)
.. +.+..+....+.. +++|+++|||+|++|.++.. .+ .+|+..++++|.||++|+.++|...||..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~ 636 (715)
T 2va8_A 557 LEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNE 636 (715)
T ss_dssp HTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 54 3333221111222 78999999999999998752 22 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHH-HHhc
Q 000129 1913 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR-FCNR 1991 (2114)
Q Consensus 1913 ~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~-~~~~ 1991 (2114)
.+..+++|++||.+|+|++.+||+|||||++.++++|+++| ++|+.||+ ++++++..+++ +.+.+.|++ +...
T Consensus 637 ~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g---~~s~~~l~-~~~~~l~~~l~--~~~~~~i~~~~~~~ 710 (715)
T 2va8_A 637 HADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNG---IKELGDVV-MNPDKVKNLLG--QKLGEKVVQEAARL 710 (715)
T ss_dssp HHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTT---CCSHHHHH-HCHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcC---CCCHHHHh-CCHHHHHHHhC--hhHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999 99999999 99999999987 888888888 5555
Q ss_pred CCce
Q 000129 1992 FPNI 1995 (2114)
Q Consensus 1992 ~P~i 1995 (2114)
+|.+
T Consensus 711 ~~~~ 714 (715)
T 2va8_A 711 LNRF 714 (715)
T ss_dssp HC--
T ss_pred hccC
Confidence 6754
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=601.67 Aligned_cols=323 Identities=36% Similarity=0.678 Sum_probs=308.2
Q ss_pred cCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccC-CCC
Q 000129 1780 EEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE-NPK 1858 (2114)
Q Consensus 1780 ~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~-~~~ 1858 (2114)
++++.+.||++|+|||+|||+|.||+.|...+++.++..++|++||.|+||.++|+|++|+..|.+|++++|+++. +..
T Consensus 4 ~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~ 83 (328)
T 3im1_A 4 EATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTS 83 (328)
T ss_dssp CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSC
T ss_pred cCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCC
Confidence 4566799999999999999999999999999999999999999999999999999999999999999999998853 456
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccC
Q 000129 1859 FTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQL 1938 (2114)
Q Consensus 1859 ~~~~~~K~~lLLqahlsr~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QL 1938 (2114)
+++|+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||+...||+. ++++|+|+|||+||+|++++||+||
T Consensus 84 ~~~~~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 84 SGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSSHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCC
Confidence 788999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEE
Q 000129 1939 PHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVV 2018 (2114)
Q Consensus 1939 P~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~ 2018 (2114)
|||+++++++|.++| ++|++||++++++++..++++++.++++|+++|++||+++|+++|.+++.|++|+.++|+|+
T Consensus 163 p~i~~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~ 239 (328)
T 3im1_A 163 PHFNNKILEKCKEIN---VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQ 239 (328)
T ss_dssp TTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEE
T ss_pred CCCCHHHHHHHHhCC---CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEE
Confidence 999999999999999 99999999999999999999999999999999999999999999999889999999999999
Q ss_pred EEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccc-ccEEEEEEEecCCCCceEEEEEEEecCccc
Q 000129 2019 LERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKKTYTLYFMCDSYMG 2097 (2114)
Q Consensus 2019 l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~-~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G 2097 (2114)
++|+++. ..+.||||+||+.|.|+||++|||.++|+|+++||+++.+ .++++++|++|+ +|.|+|++|+|||||+|
T Consensus 240 l~~~~~~--~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~-~g~~~~~v~~vsD~ylG 316 (328)
T 3im1_A 240 LTRDVEP--ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT-SGKHNLTIWCVCDSYLD 316 (328)
T ss_dssp EEESSCC--SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCC-SEEEEEEEEEEESSCSS
T ss_pred EEECCCC--CCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCC-CCcEEEEEEEEecCCcc
Confidence 9997632 3468999999999999999999999999999999999975 788999999994 69999999999999999
Q ss_pred cCeEEEEEEEee
Q 000129 2098 CDQEYAFTVDVK 2109 (2114)
Q Consensus 2098 ~D~~~~~~~~V~ 2109 (2114)
||++++|+++|.
T Consensus 317 ~d~~~~~~l~V~ 328 (328)
T 3im1_A 317 ADKELSFEINVK 328 (328)
T ss_dssp CCEEEEEEEEEC
T ss_pred eeEEEEEEEEeC
Confidence 999999999984
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-62 Score=598.59 Aligned_cols=323 Identities=57% Similarity=0.999 Sum_probs=279.7
Q ss_pred CccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCCh
Q 000129 1783 MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1862 (2114)
Q Consensus 1783 ~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~ 1862 (2114)
+.+.||++|+|||+|||++.|++.|...+++.++..++|++||.|+||.++|+|++|+..|.+|++++|++++.+.+++|
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~ 90 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDP 90 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCH
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999998876678899
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCC
Q 000129 1863 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFM 1942 (2114)
Q Consensus 1863 ~~K~~lLLqahlsr~~lp~~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~ 1942 (2114)
+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||+...||+.+++++|+|+|||+||+|++++||+|||||+
T Consensus 91 ~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~ 170 (339)
T 2q0z_X 91 HVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCCCC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCceEEEEEEeccccccCCCcEEEEEEEEEc
Q 000129 1943 KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERD 2022 (2114)
Q Consensus 1943 ~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~ 2022 (2114)
++++++|.++| +.|+++|++++++++..+|++++.++++|+++|++||+++|+++|.+++.+++|+.++|+|+++|+
T Consensus 171 ~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 171 SEHIKRCTDKG---VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp HHHHHHHHHTT---CCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEEC
T ss_pred HHHHHHHHhcC---CCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEEC
Confidence 99999999999 999999999999999999999999999999999999999999999998889999999999999996
Q ss_pred CCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccccEEEEEEEecCCCCceEEEEEEEecCccccCeEE
Q 000129 2023 LEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2102 (2114)
Q Consensus 2023 ~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~p~~~G~~~~~l~~~sDsY~G~D~~~ 2102 (2114)
++ ..+.||||+||+.|.|+||++|||.++|+|+++||+++.+..+++++|++| .+|.++|++++|||+|+|||+++
T Consensus 248 ~~---~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 248 EE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SS---CCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CC---CCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccceEEEEEEECC-CCCCeeEEEEEEcccccCcceEE
Confidence 42 225899999999999999999999999999999999999888899999999 89999999999999999999999
Q ss_pred EEEEEeecCC
Q 000129 2103 AFTVDVKEAG 2112 (2114)
Q Consensus 2103 ~~~~~V~~~~ 2112 (2114)
+|+++|.+++
T Consensus 324 ~i~~~v~~~~ 333 (339)
T 2q0z_X 324 KFSVDVKEAE 333 (339)
T ss_dssp EEEEEEBCC-
T ss_pred EEEEEEecCc
Confidence 9999998875
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-53 Score=521.53 Aligned_cols=307 Identities=24% Similarity=0.394 Sum_probs=258.3
Q ss_pred CCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCCC-CCCC
Q 000129 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEE 1069 (2114)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~-~~~~ 1069 (2114)
.|.+.+|++|||||+|||+|.||+.|+..+++.++..++|++||.|.||.++++|++|+.+|.+|.+++|+|+++ .+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCC
Confidence 477999999999999999999999999999999999999999999999999999999999999999999999964 5889
Q ss_pred hhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCC
Q 000129 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149 (2114)
Q Consensus 1070 ~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~ 1149 (2114)
|+.|+|+||||||||++++ .+|.+|+.+|+++|.||++||+||+..+||+..+.++++|||||+||+|++++||+||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~ 168 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPH 168 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTT
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCC
Confidence 9999999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCch-hHHHHHHHHhcCCceeEEEEEee---c-cCceEEEEEEEccCC
Q 000129 1150 IPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK-MGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPDF 1223 (2114)
Q Consensus 1150 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~P~~~~~~~~~~---~-~~~~l~~~l~i~~~f 1223 (2114)
||++++++|+++|+ +++++.+++++++++++++++ .++.+++++++||++++++.++| | +++.++|.|++++++
T Consensus 169 i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~ 248 (339)
T 2q0z_X 169 FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE 248 (339)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS
T ss_pred CCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECC
Confidence 99999999999997 899999999999999999764 66999999999999999999996 6 478999999999999
Q ss_pred ccCCCCCCc------cccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcccc
Q 000129 1224 LWDDKVHGY------VEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2114)
Q Consensus 1224 ~~~~~~~~~------~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~ 1297 (2114)
+|+..+|++ .|.|||||+|++++.|++++++.++++ .++.++|++| +|++++|+++++||+|+||+...
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~---~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE---EEEEEEEECC--SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccc---eEEEEEEECC--CCCCeeEEEEEEcccccCcceEE
Confidence 999999865 466999999999999999999999873 4678999999 78999999999999999999999
Q ss_pred cccccc
Q 000129 1298 PVSFRH 1303 (2114)
Q Consensus 1298 ~is~~~ 1303 (2114)
+++|+-
T Consensus 324 ~i~~~v 329 (339)
T 2q0z_X 324 KFSVDV 329 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998763
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=512.62 Aligned_cols=306 Identities=24% Similarity=0.370 Sum_probs=282.5
Q ss_pred CCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCC--CCCCC
Q 000129 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV--KESLE 1068 (2114)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~--~~~~~ 1068 (2114)
++.+.+|++|+|||+|||+|.||+.|++.+++.++..++|+++|.|.||.++++|++|+.+|.+|..++|+|+ ++.++
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 85 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSG 85 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCC
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999986 56688
Q ss_pred ChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCC
Q 000129 1069 EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFN 1148 (2114)
Q Consensus 1069 ~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~ 1148 (2114)
+|+.|+++||||||||++++. +|.+|+.+|+++|.||++||+|||..+||+. +.++++|||||+||+|++++||+|||
T Consensus 86 ~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp 163 (328)
T 3im1_A 86 SVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIP 163 (328)
T ss_dssp SHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGST
T ss_pred CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCC
Confidence 999999999999999999987 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCceeEEEEEee---c-cCceEEEEEEEccC
Q 000129 1149 GIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPD 1222 (2114)
Q Consensus 1149 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~~---~-~~~~l~~~l~i~~~ 1222 (2114)
|||++++++|+++|+ +++++.++++++++++++++ +.++.+++++++||+++++++++| | +++.++|.|+++|+
T Consensus 164 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 243 (328)
T 3im1_A 164 HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243 (328)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEES
T ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEEC
Confidence 999999999999998 89999999999999999865 588999999999999999999986 7 57999999999999
Q ss_pred CccCCC-C------CCccccEEEEEEeCCCCeEEEEEeeeeeecccccccEEEEEeccCCCCCCeEEEEEeccccccCcc
Q 000129 1223 FLWDDK-V------HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295 (2114)
Q Consensus 1223 f~~~~~-~------~~~~~~~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~ 1295 (2114)
|.|++. + |+..|+|||||+|.++++|++.+++.+.+. ..++.++|.+| +|++++|+++++||+|+|+++
T Consensus 244 ~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~--~~~~~~~f~~p--~~g~~~~~v~~vsD~ylG~d~ 319 (328)
T 3im1_A 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--TSGKHNLTIWCVCDSYLDADK 319 (328)
T ss_dssp SCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS--EEEEEEEEECC--CSEEEEEEEEEEESSCSSCCE
T ss_pred CCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc--ceEEEEEEEcC--CCCcEEEEEEEEecCCcceeE
Confidence 999763 3 566778999999999999999999998652 23445555555 679999999999999999999
Q ss_pred ccccccc
Q 000129 1296 VLPVSFR 1302 (2114)
Q Consensus 1296 ~~~is~~ 1302 (2114)
..++.++
T Consensus 320 ~~~~~l~ 326 (328)
T 3im1_A 320 ELSFEIN 326 (328)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9888753
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=477.97 Aligned_cols=395 Identities=25% Similarity=0.356 Sum_probs=294.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
++..|+|+|.++++.+..+ .++|++||||||||++|++|++..+..+ .+++|++|+++|+.|+++.|.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~g-----------~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHHhcC-----------CeEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999987554 6699999999999999999999988543 389999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (2114)
+.+. .|+.++|+.+... +++|+|+|||++..+..... ..+.++++|||||||++.+ +||..++.++..+
T Consensus 249 ~~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~--~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 249 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HHTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCS--SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred HHhC----CccEEeCccccCC----CCCEEEeChHHHHHHHHcCc--cccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 9875 5788999987653 58999999999844443332 4578999999999999988 6899888776543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccC---------ch--hHHHH-H
Q 000129 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK---------KP--LQRFQ-L 718 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~---------~~--~~~~~-~ 718 (2114)
+..+|+|+||||+||..+++.|++.....+...+...++|+|+...++..... .. ...+. .
T Consensus 319 -------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~ 391 (1108)
T 3l9o_A 319 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 391 (1108)
T ss_dssp -------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHH
T ss_pred -------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHH
Confidence 67899999999999999999999876666778888889999987655421110 00 00000 0
Q ss_pred ---h------------------------------hHHHHHHHH--HHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000129 719 ---M------------------------------NDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2114)
Q Consensus 719 ---~------------------------------~~~~~~~i~--~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l 763 (2114)
+ ...++..+. ...+.+++||||+|++.|..++..|...+......
T Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 392 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp HTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred HHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHH
Confidence 0 111122111 12235699999999999999999987655443211
Q ss_pred ccccccC-chhHHHHHhhh-cccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEE
Q 000129 764 GRFLKED-SVSREILQSHT-DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2114)
Q Consensus 764 ~~~l~~~-~~~~~~l~~~~-~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2114)
...+..- ......+.... .......+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~ 551 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 551 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEE
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceE
Confidence 0000000 00000000000 001123466778899999999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhHHHHH
Q 000129 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLADQLN 917 (2114)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-e~~~~~~ll-~~~~pies~l~~~l~d~l~ 917 (2114)
||+++.+|++.. ..++|+.+|+||+|||||.|.|..|.||++++.. +...+..++ ..+.|++|+|.......+|
T Consensus 552 VI~~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~iln 627 (1108)
T 3l9o_A 552 VFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 627 (1108)
T ss_dssp EESCSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_pred EEecCcccCccc--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence 999999999875 4578999999999999999999999999999875 455566664 4567999998764444444
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=468.69 Aligned_cols=388 Identities=25% Similarity=0.375 Sum_probs=291.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|+ |+++|.++++.+..+ ++++++||||||||++|+++++..+..+ .++||++|+++|+.|+++.|.
T Consensus 84 ~f~-L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l~~g-----------~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHhccC-----------CeEEEECChHHHHHHHHHHHH
Confidence 464 999999999987665 5699999999999999999999887532 389999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (2114)
+.++ +|+.++|+..... .++|+|+|||++..+..+.. ..++++++|||||||++.+ .||..++.++..+
T Consensus 151 ~~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~--~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HHhC----CEEEEeCCCccCC----CCCEEEEcHHHHHHHHHcCc--chhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 9875 6888999987653 58999999999855444432 5678999999999999998 6999998776543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeec---------cCch------hHH
Q 000129 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ---------VKKP------LQR 715 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~---------~~~~------~~~ 715 (2114)
+..+|+|+||||+||..+++.|+..........+...++|+|+...++... .... ...
T Consensus 221 -------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 221 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp -------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred -------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 568999999999999999999998654556777777889999877665311 0000 000
Q ss_pred HHHh------------------------------hHHHHHHH--HHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000129 716 FQLM------------------------------NDLCYEKV--VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2114)
Q Consensus 716 ~~~~------------------------------~~~~~~~i--~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l 763 (2114)
...+ ...+...+ ....+..++||||+|++.|+.++..|...+.....-
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0000 00111111 112235699999999999999999886533221100
Q ss_pred ccccccCchhHHHHHhhhccc--------CcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcC
Q 000129 764 GRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (2114)
Q Consensus 764 ~~~l~~~~~~~~~l~~~~~~~--------~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVd 835 (2114)
............... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||
T Consensus 374 ------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GID 447 (1010)
T 2xgj_A 374 ------KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 447 (1010)
T ss_dssp ------HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTT
T ss_pred ------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCC
Confidence 000000111111111 113455677899999999999999999999999999999999999999999
Q ss_pred CCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhH
Q 000129 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLA 913 (2114)
Q Consensus 836 lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-e~~~~~~ll-~~~~pies~l~~~l~ 913 (2114)
+|++++||++...||... +.++|+.+|+||+|||||.|.|..|.||+++++. +...+..++ ....|++|+|.....
T Consensus 448 iP~~~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~ 525 (1010)
T 2xgj_A 448 MPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 525 (1010)
T ss_dssp CCBSEEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHH
T ss_pred CCCceEEEeCCcccCCcC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHH
Confidence 999999999888888754 4567999999999999999999899999999875 666666664 456789999875444
Q ss_pred HHHH
Q 000129 914 DQLN 917 (2114)
Q Consensus 914 d~l~ 917 (2114)
..+|
T Consensus 526 ~iln 529 (1010)
T 2xgj_A 526 MILN 529 (1010)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=447.85 Aligned_cols=368 Identities=19% Similarity=0.248 Sum_probs=273.2
Q ss_pred ccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcE
Q 000129 476 LIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552 (2114)
Q Consensus 476 l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~k 552 (2114)
+.....|++++..++ .||.+|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+...... ...+++
T Consensus 73 l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~ 148 (563)
T 3i5x_A 73 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVK 148 (563)
T ss_dssp HHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCC
T ss_pred HhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCee
Confidence 334455889988887 68999999999999999964 56899999999999999999999998875422 123468
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcc----CCcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccc
Q 000129 553 IVYVAPMKALVAEVVGNLSNRLQM----YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLV 624 (2114)
Q Consensus 553 il~iaP~raLa~q~~~~~~~~~~~----~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v 624 (2114)
+|||+||++||.|+++.+++++.. .++.+..++|+....... ...++|+|+||+++..+.++.. ...++.+
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~ 227 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFV 227 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccc
Confidence 999999999999999999986542 246688888887654432 3478999999999843333321 1356789
Q ss_pred cEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEeec--CCcccc--
Q 000129 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFD--NSYRPV-- 698 (2114)
Q Consensus 625 ~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~-~dva~~l~~~~~~~~~~f~--~~~rpv-- 698 (2114)
++|||||||++.+ .+++.++.++..+..........+|+++||||+|+. ..+..++...+ ....+. ....+.
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNEPEAH 305 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSSCSSC
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCC--ceEEEeccCCCCcccc
Confidence 9999999999988 689999999888766554455688999999999863 33333322221 111111 111111
Q ss_pred -cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHH
Q 000129 699 -PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (2114)
Q Consensus 699 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l 777 (2114)
.+.+.+.... ........+...+...+.....++++||||+|++.|..++..|......
T Consensus 306 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~------------------ 365 (563)
T 3i5x_A 306 ERIDQSVVISE--KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK------------------ 365 (563)
T ss_dssp TTEEEEEEEES--STTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT------------------
T ss_pred ccCceEEEECc--hhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC------------------
Confidence 1222222221 1122222233333444444455789999999999999999998865211
Q ss_pred HhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccc
Q 000129 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (2114)
Q Consensus 778 ~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~ 857 (2114)
...+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++.
T Consensus 366 ----------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p~---- 421 (563)
T 3i5x_A 366 ----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVPS---- 421 (563)
T ss_dssp ----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCCS----
T ss_pred ----------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECCCC----
Confidence 145788999999999999999999999999999999999999999999999 55554
Q ss_pred cCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
+..+|+||+|||||.| ..|.|++++...+..++..+.
T Consensus 422 --s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 422 --ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp --STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred --chhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHH
Confidence 6678999999999987 679999999998888777764
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=418.90 Aligned_cols=337 Identities=17% Similarity=0.270 Sum_probs=258.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++...+ .||.+|+|+|.++++.++.+ .+++++||||||||++|++|++..+...... ....++++||++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~~~lil~P 137 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRPQVVIVSP 137 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCccEEEEec
Confidence 4788888887 79999999999999998876 5599999999999999999999998765321 1124568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|++||.|+++.+.++....++++..++|+.....+. ..+++|+|+||+++ +.+.+.. ..++++++||+||||+
T Consensus 138 treLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF---ITFEDTRFVVLDEADR 214 (434)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---CCCTTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---cccccCCeEEEccHhh
Confidence 999999999999998888889999999998765432 35789999999998 5554432 4578899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCc--ccccceeEEEeeccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKK 711 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~ 711 (2114)
+.+ ++++.+..++..+ ......|++++|||+| ..+..+.........+...... ....+.+.+..+...
T Consensus 215 ~~~~gf~~~~~~i~~~~-----~~~~~~q~l~~SAT~~--~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~- 286 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHV-----TMRPEHQTLMFSATFP--EEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY- 286 (434)
T ss_dssp HTSTTTHHHHHHHHHCT-----TSCSSCEEEEEESCCC--HHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG-
T ss_pred hhccCcHHHHHHHHHhc-----CCCCCceEEEEeccCC--HHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH-
Confidence 987 5777766665432 1256789999999998 4555555544333333322211 122334444333222
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh
Q 000129 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2114)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (2114)
.+... +.+.+.. . ..++||||+|++.+..++..|...+
T Consensus 287 --~k~~~----l~~~l~~-~-~~~~lVF~~t~~~a~~l~~~L~~~~---------------------------------- 324 (434)
T 2db3_A 287 --AKRSK----LIEILSE-Q-ADGTIVFVETKRGADFLASFLSEKE---------------------------------- 324 (434)
T ss_dssp --GHHHH----HHHHHHH-C-CTTEEEECSSHHHHHHHHHHHHHTT----------------------------------
T ss_pred --HHHHH----HHHHHHh-C-CCCEEEEEeCcHHHHHHHHHHHhCC----------------------------------
Confidence 12222 2222222 2 3359999999999999999887643
Q ss_pred hccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhccc
Q 000129 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2114)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2114)
..+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||++. +..+|+||+|||
T Consensus 325 ---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~p~------~~~~y~qriGR~ 391 (434)
T 2db3_A 325 ---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDMPS------KIDDYVHRIGRT 391 (434)
T ss_dssp ---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSCCS------SHHHHHHHHTTS
T ss_pred ---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECCCC------CHHHHHHHhccc
Confidence 34677899999999999999999999999999999999999999999999 77665 788999999999
Q ss_pred CCCCCCCceEEEEEcCCC
Q 000129 872 GRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 872 GR~g~d~~G~~iil~~~~ 889 (2114)
||.| ..|.+++++++.
T Consensus 392 gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 392 GRVG--NNGRATSFFDPE 407 (434)
T ss_dssp SCTT--CCEEEEEEECTT
T ss_pred ccCC--CCCEEEEEEecc
Confidence 9988 679999998854
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=433.33 Aligned_cols=383 Identities=20% Similarity=0.266 Sum_probs=275.9
Q ss_pred EecCCCCCCCCCCCCCccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHH
Q 000129 460 IHVPAMKHKPLDPNEKLIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 460 i~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
+++|.....+...-+.+.....|++++..++ .||.+|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l 85 (579)
T 3sqw_A 6 IHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL 85 (579)
T ss_dssp EEECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 4555543332222223333455899999888 78999999999999999954 56799999999999999999999998
Q ss_pred HhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc----cCCcEEEEEeCCCccChhh----hccceEEEcCHhHH
Q 000129 537 ALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ----MYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW 608 (2114)
Q Consensus 537 ~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~----~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~ 608 (2114)
...... ...++++|||+||++|+.|+++.+.+++. ...+.+..+.|+....... ...++|+|+||+++
T Consensus 86 ~~~~~~----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l 161 (579)
T 3sqw_A 86 INTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 161 (579)
T ss_dssp HHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH
T ss_pred Hhcccc----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH
Confidence 775321 12356899999999999999999998763 2346788888887654432 23689999999998
Q ss_pred -HHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC
Q 000129 609 -DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686 (2114)
Q Consensus 609 -d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~ 686 (2114)
+.+.+.. ...++.+++|||||||++.+ .+++.++.++..+..........+|+++||||+++. +..+.......
T Consensus 162 ~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~--v~~~~~~~l~~ 237 (579)
T 3sqw_A 162 IDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDK--VQKLANNIMNK 237 (579)
T ss_dssp HHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH--HHHHTTTTCCS
T ss_pred HHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChH--HHHHHHHHcCC
Confidence 4444331 13567899999999999988 588888888877755444445578999999999862 33333222222
Q ss_pred ce-EeecC--Ccccc---cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcc
Q 000129 687 GL-FYFDN--SYRPV---PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (2114)
Q Consensus 687 ~~-~~f~~--~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (2114)
+. ..... ...+. .+.+.+.... . .......+...+...+.....+.++||||+|++.|..++..|......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~- 314 (579)
T 3sqw_A 238 KECLFLDTVDKNEPEAHERIDQSVVISE-K-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK- 314 (579)
T ss_dssp SEEEEEESSCSSSCSSCTTEEEEEEEES-S-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-
T ss_pred CceEEEeecCccccccccccceEEEEec-c-hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-
Confidence 11 11111 11111 1222222221 1 112222222333333444345779999999999999999998764211
Q ss_pred cccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceE
Q 000129 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840 (2114)
Q Consensus 761 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~ 840 (2114)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 315 ---------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 315 ---------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp ---------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred ---------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 13578899999999999999999999999999999999999999999
Q ss_pred EEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhh
Q 000129 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2114)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll 898 (2114)
+||+ |+++. +..+|+||+|||||.| ..|.|++++...+..++..+.
T Consensus 362 ~VI~----~~~p~------s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 362 EVLQ----IGVPS------ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp EEEE----ESCCS------STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred EEEE----cCCCC------CHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHHH
Confidence 9999 55554 5668999999999987 679999999998887776653
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=448.44 Aligned_cols=381 Identities=26% Similarity=0.401 Sum_probs=288.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|.++++.++.+ ++++++||||||||++|++++...+..+ .++||++|+++|+.|++++|.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~g-----------~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRNM-----------TKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHTT-----------CEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhcC-----------CeEEEEeCCHHHHHHHHHHHHHHc
Confidence 5899999999988776 5699999999999999999998876432 389999999999999999999876
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (2114)
. +++++.++|+..... .++|+|+|||++....... ...+.++++|||||||++.+ ++|..++.++..
T Consensus 107 ~--~~~v~~l~G~~~~~~----~~~IlV~Tpe~L~~~l~~~--~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~---- 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINP----DANCLIMTTEILRSMLYRG--ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM---- 174 (997)
T ss_dssp ----CCEEEECSSCEECT----TSSEEEEEHHHHHHHHHHT--CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH----
T ss_pred C--CCeEEEEeCCCccCC----CCCEEEECHHHHHHHHHhC--chhhcCCCEEEEECcccccccchHHHHHHHHHh----
Confidence 5 678999999876543 5899999999984333332 24678899999999999988 699999987654
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEee-------ccCch--hHHHH----H--
Q 000129 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQ----L-- 718 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~----~-- 718 (2114)
.+..+++|+||||+||..+++.|++......++.+...+||+|+...+... ..... ...+. .
T Consensus 175 ---l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 175 ---LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp ---SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred ---cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 357899999999999999999999876667788899999999998765420 00000 00000 0
Q ss_pred -------------------------------------------------------------------hhHHHHHHHH---
Q 000129 719 -------------------------------------------------------------------MNDLCYEKVV--- 728 (2114)
Q Consensus 719 -------------------------------------------------------------------~~~~~~~~i~--- 728 (2114)
.....+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 0000111122
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcc--------cCcchhhhhccCceEEe
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM--------VKSNDLKDLLPYGFAIH 800 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~--------~~~~~L~~ll~~gv~~h 800 (2114)
...+..++||||+|++.|+.++..|...+...... ...-.......... .....+..++..||++|
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 405 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKE------KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVH 405 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHH------HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeee
Confidence 22235699999999999999999886543221100 00000111111111 11234677888999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
||+|++.+|..+++.|++|.++|||||+++++|||+|+++|||.+...||+.. ..++|..+|+||+|||||.|.+..|
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~--~~~~s~~~y~Qr~GRAGR~G~~~~G 483 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNG--LRELTPGEFTQMAGRAGRRGLDSTG 483 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTE--EEECCHHHHHHHHGGGCCTTTCSSE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCcc--CCCCCHHHHhHHhcccccCCCCcce
Confidence 99999999999999999999999999999999999999999998888888653 5688999999999999999999999
Q ss_pred EEEEEcC--CCcHHHHHHh-hcCCCcccchhhH
Q 000129 881 EGIIITG--HSELRYYLSL-MNQQLPIESQFVS 910 (2114)
Q Consensus 881 ~~iil~~--~~e~~~~~~l-l~~~~pies~l~~ 910 (2114)
.+|+++. ..+...+.++ ...+.|++|++..
T Consensus 484 ~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 484 TVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp EEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCC
T ss_pred EEEEecCCCcchHHHHHHHhcCCCccccccccc
Confidence 9999994 3455666665 4467788887754
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=428.31 Aligned_cols=368 Identities=17% Similarity=0.227 Sum_probs=273.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccC--CCceEEEEEcccHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE--TGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~--~~~~k~l~I~Ptr~L 1402 (2114)
|.....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+..... ..++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 55666666655 7999999999999999964 5689999999999999999999999877421 123489999999999
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEEEcCCcccch--hh--ccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc
Q 000129 1403 AKERYRDWEIKFGQ---GLGMRVVELTGETAMDL--KL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~---~~g~~v~~l~G~~~~~~--~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~ 1475 (2114)
|.|+++.+++.+.. ..+..+..+.|+..... .. ...++|+|+||++|..+++++. ...++++++||+||||+
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccceEEEEeCHHH
Confidence 99999999964432 12456777788765432 12 2367999999999988887642 33578899999999999
Q ss_pred ccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCcee-ecCCCCCcc---CcEEEEecccc
Q 000129 1476 IGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLF-NFPPGVRPV---PLEIHIQGVDI 1549 (2114)
Q Consensus 1476 l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~-~f~~~~rpv---~l~~~~~~~~~ 1549 (2114)
+.++ .++.++.++..+.........+.|+++||||+++. .+++.++...+..++ .......+. .+...+.. .
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 315 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI--S 315 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE--E
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE--C
Confidence 9875 47788888888777655556688999999999884 455555544432222 211111111 11111111 1
Q ss_pred cchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000129 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2114)
Q Consensus 1550 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2114)
.................+... ..++++||||+|++.|..++..|.....
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~------------------------------ 364 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------ 364 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHT------------------------------
T ss_pred chhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhcc------------------------------
Confidence 111122211112222222222 5677899999999999999977743211
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+||
T Consensus 365 --~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~GR 432 (563)
T 3i5x_A 365 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIGR 432 (563)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHTT
T ss_pred --CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEE----------EECCCCchhhhhhhcCc
Confidence 134689999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHHHHHHHhccC
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~~~~lRl~~n 1742 (2114)
|||. +..|.|++++...+..+++.+.+...-
T Consensus 433 agR~--g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 433 TARS--GKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp SSCT--TCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred cccC--CCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 9998 678999999999998888888765443
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=441.93 Aligned_cols=364 Identities=26% Similarity=0.431 Sum_probs=275.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
|. |+|+|.++++.+.. +++++|+||||||||++|+++++..+.. ++ ++||++|+++|+.|++++|++.|+
T Consensus 85 f~-L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~---g~--rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 85 FT-LDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp SC-CCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CC-CCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhcc---CC--eEEEECChHHHHHHHHHHHHHHhC---
Confidence 64 99999999999877 5569999999999999999999988754 44 999999999999999999997775
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
+++.++|+...+ ..++|+|+|||+|..++.++ ...+.++++|||||+|.+.+. +|..++.++..
T Consensus 155 --~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------- 219 (1010)
T 2xgj_A 155 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------- 219 (1010)
T ss_dssp --CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-------
T ss_pred --CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhcccchhHHHHHHHHh-------
Confidence 588899988755 35799999999998887763 456899999999999999875 67777766543
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEecccc---------------cchHHHHHhcC-
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDI---------------TNFEARMQAMT- 1560 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~---------------~~~~~~~~~~~- 1560 (2114)
++...++|+||||++|..++++|++... .....+....||+|+..++..... ..+...+..+.
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 3678999999999999999999997432 234445557788888776643110 00111111000
Q ss_pred ----------------------------HHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccC
Q 000129 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2114)
Q Consensus 1561 ----------------------------~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~ 1610 (2114)
......+...+ ....++||||+|++.|+.++..|..........
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e------ 373 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE------ 373 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH------
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH------
Confidence 11112222222 245689999999999999997774311000000
Q ss_pred CCcccchhhHh------------hhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc
Q 000129 1611 WPAEEVEPFID------------NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1611 ~~~~~l~~~~~------------~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~ 1678 (2114)
...+..... ......+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 374 --~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 374 --KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp --HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred --HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCc
Confidence 000000000 011245667788899999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHHHHHHHH
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFL 1737 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~~~~~~l 1737 (2114)
++||.++.+|++..+ .|.+..+|+||+|||||.|.+..|.|++++.+. +...+++++
T Consensus 452 ~vVI~~~~kfd~~~~--rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp EEEESCSEEECSSCE--EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred eEEEeCCcccCCcCC--ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 999988888987643 478999999999999999888899999999876 556666665
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=448.84 Aligned_cols=373 Identities=25% Similarity=0.395 Sum_probs=274.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..|+|+|.++++.+.+ +++++++||||||||++|++|++..+.. ++ +++|++|+++|+.|++++|++.++
T Consensus 182 ~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~--rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhc---CC--eEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 45799999999999876 4569999999999999999999998855 45 999999999999999999997665
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~ 1497 (2114)
.++.++|+.+.+ ..++|+|+||++|..++.+ ....+.++++|||||||++.+. +|..++.++. .
T Consensus 253 --~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~-------~ 317 (1108)
T 3l9o_A 253 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETII-------L 317 (1108)
T ss_dssp --SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH-------H
T ss_pred --CccEEeCccccC----CCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHH-------h
Confidence 478899988754 4579999999999888776 3345889999999999999874 4555555443 3
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEeccccc---------------chHHHHHhcC-
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDIT---------------NFEARMQAMT- 1560 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~---------------~~~~~~~~~~- 1560 (2114)
++.+.|+|+||||++|..+++.|++... .....+....+|+|+..++...... .+...+..+.
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 4678999999999999999999997643 2355566678999988766422110 0111110000
Q ss_pred ----------------------------HHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc---c
Q 000129 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS---A 1607 (2114)
Q Consensus 1561 ----------------------------~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~---~ 1607 (2114)
......+...+ ...+++||||+|++.|..++..|............ .
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 11122222221 34568999999999999999887443221111000 0
Q ss_pred ccCCCcccchhhHh-hhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeee
Q 000129 1608 FLLWPAEEVEPFID-NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1608 ~l~~~~~~l~~~~~-~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
++......+...-. ......+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||....
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc
Confidence 00000000000000 00124466778889999999999999999999999999999999999999999999999998888
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHHHHHHHH
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFL 1737 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~~~~~~l 1737 (2114)
.|++..+ .|.|..+|+||+|||||.|.+..|.|++++.+. ....+++++
T Consensus 558 ~~d~~~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 558 KWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp EESSSCE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred ccCcccc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 8887743 367999999999999999888999999999876 455566666
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=406.01 Aligned_cols=334 Identities=18% Similarity=0.266 Sum_probs=248.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC---CCceEEEEEcccHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~---~~~~k~l~I~Ptr~ 1401 (2114)
.|.....+.+.. ||..|+|+|.++++.++.+ ++++++||||||||++|++|++.++..... .+++++||++||++
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 455556666654 7999999999999999875 459999999999999999999999876321 22458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
||.|+++.++ ++....+++++.++|+..... . ....++|+|+||+++..++.+. ...+.+++++|+||||++.+
T Consensus 141 La~Q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 141 LAIQIFNEAR-KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHHHHHH-HHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SCCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHH-HHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--CcccccCCeEEEccHhhhhc
Confidence 9999999998 566666888999999877542 2 2345699999999998887763 34588999999999999887
Q ss_pred CCCchHHHHHHHHHHHHhh--cCCCceEEEEcccCCCh-hHHHH-HhcCCCCceeecCCC-CCccCcEEEEecccccchH
Q 000129 1479 QGGPVLEVIVSRMRYIASQ--VENKIRIVALSTSLANA-KDLGE-WIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFE 1553 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~--~~~~~riV~lSATl~n~-~dla~-wl~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~ 1553 (2114)
.+ +...++.+... .....|++++|||+++. ..++. |+.. . ..+..... .....+...+.......
T Consensus 218 ~g------f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~-~-~~i~~~~~~~~~~~i~~~~~~~~~~~-- 287 (434)
T 2db3_A 218 MG------FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKN-Y-VFVAIGIVGGACSDVKQTIYEVNKYA-- 287 (434)
T ss_dssp TT------THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSS-C-EEEEESSTTCCCTTEEEEEEECCGGG--
T ss_pred cC------cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccC-C-EEEEeccccccccccceEEEEeCcHH--
Confidence 64 23333444333 25678999999999753 23332 3321 1 11111111 11112222222211111
Q ss_pred HHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1554 ~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.. .....++.. ...++||||++++.|..++..|.. .+
T Consensus 288 k~------~~l~~~l~~--~~~~~lVF~~t~~~a~~l~~~L~~-----------------------------------~~ 324 (434)
T 2db3_A 288 KR------SKLIEILSE--QADGTIVFVETKRGADFLASFLSE-----------------------------------KE 324 (434)
T ss_dssp HH------HHHHHHHHH--CCTTEEEECSSHHHHHHHHHHHHH-----------------------------------TT
T ss_pred HH------HHHHHHHHh--CCCCEEEEEeCcHHHHHHHHHHHh-----------------------------------CC
Confidence 10 111122222 234599999999999999876632 24
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~ 1713 (2114)
..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI----------~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI----------NYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEE----------ESSCCSSHHHHHHHHTTSSCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEE----------EECCCCCHHHHHHHhcccccC
Confidence 5689999999999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCCCceEEEEEeecC
Q 000129 1714 LLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~ 1728 (2114)
+..|.|++|+.+.
T Consensus 395 --g~~G~a~~~~~~~ 407 (434)
T 2db3_A 395 --GNNGRATSFFDPE 407 (434)
T ss_dssp --TCCEEEEEEECTT
T ss_pred --CCCCEEEEEEecc
Confidence 6799999999844
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=403.41 Aligned_cols=342 Identities=18% Similarity=0.220 Sum_probs=253.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.+++++.+.+ .||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.... .+.++||++
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~ 102 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 102 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------CCCCEEEEC
Confidence 4677777776 68999999999999999986 568999999999999999999998875432 245899999
Q ss_pred ccHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
|+++|+.|+++.+.++.... ++.+....|+..........++|+|+||+++..+.+... ...+.++++|||||||++.
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-SSCGGGCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC-CcChhhCcEEEEeCHHHHh
Confidence 99999999999999876643 688888999887776666678999999999854443322 2456889999999999987
Q ss_pred cC--CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCc--ccccceeEEEeeccCch
Q 000129 637 DN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 637 d~--rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~ 712 (2114)
+. +...+..+ ........|++++|||+++ .+..+................ .+..+.+.+... ...
T Consensus 182 ~~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 250 (412)
T 3fht_A 182 ATQGHQDQSIRI-------QRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC--SSR 250 (412)
T ss_dssp STTTTHHHHHHH-------HHTSCTTCEEEEEESCCCH--HHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEEC--SSH
T ss_pred hcCCcHHHHHHH-------HhhCCCCceEEEEEeecCH--HHHHHHHHhcCCCeEEeeccccccccCceEEEEEc--CCh
Confidence 62 22222221 2234668899999999874 333333322222222221111 112223333222 222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+. .+......+++||||++++.+..++..|...+
T Consensus 251 ~~~~~~l~-----~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~----------------------------------- 290 (412)
T 3fht_A 251 DEKFQALC-----NLYGAITIAQAMIFCHTRKTASWLAAELSKEG----------------------------------- 290 (412)
T ss_dssp HHHHHHHH-----HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHH-----HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-----------------------------------
Confidence 22222222 22333457899999999999999999887642
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++.|.++. .+.|..+|+||+||||
T Consensus 291 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~----~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 291 --HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----GNPDNETYLHRIGRTG 364 (412)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS----SSBCHHHHHHHHTTSS
T ss_pred --CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC----CCcchheeecccCccc
Confidence 3478899999999999999999999999999999999999999999999955444432 3458999999999999
Q ss_pred CCCCCCceEEEEEcCCCc
Q 000129 873 RPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e 890 (2114)
|.| ..|.|+++++..+
T Consensus 365 R~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 365 RFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp CTT--CCEEEEEEECSHH
T ss_pred CCC--CCceEEEEEcChh
Confidence 987 6799999998765
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=407.42 Aligned_cols=351 Identities=19% Similarity=0.270 Sum_probs=254.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCC--------CCC--CCC
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRND--------DGS--FNH 548 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~--------~g~--~~~ 548 (2114)
.|++++...+ .||.+|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...... .+. ...
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 4678888877 68999999999999988765 5699999999999999999999988654211 000 011
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCccccccc
Q 000129 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625 (2114)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~ 625 (2114)
..+++||++|+++|+.|+++.+.++....++++..++|+.....+. ..+++|+|+||+++..+.+... ..+..++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~ 177 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK--IGLDFCK 177 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS--BCCTTCC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC--cChhhCc
Confidence 2357999999999999999999998888889999999987655432 3468999999999844443322 4577899
Q ss_pred EEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCC--ccccccee
Q 000129 626 LLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQ 702 (2114)
Q Consensus 626 liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~--~rpv~l~~ 702 (2114)
+|||||||++.+ .+++.+..++.... .......+++++|||+|+ .+..++........+..... ..+..+.+
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPK--EIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCH--HHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCH--HHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 999999999876 46666655543210 011236789999999874 33333322222222222111 11223333
Q ss_pred EEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc
Q 000129 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2114)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (2114)
.++..... .+.. .+.+.+.....++++||||++++.+..++..|...+
T Consensus 253 ~~~~~~~~---~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------- 300 (417)
T 2i4i_A 253 KVVWVEES---DKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------------------------- 300 (417)
T ss_dssp EEEECCGG---GHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEEeccH---hHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-------------------------
Confidence 33333222 1222 222223222346799999999999999999887632
Q ss_pred ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHH
Q 000129 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2114)
Q Consensus 783 ~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2114)
..+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..
T Consensus 301 ------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~p~------s~~ 358 (417)
T 2i4i_A 301 ------------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS------DIE 358 (417)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSCCS------SHH
T ss_pred ------------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcCCC------CHH
Confidence 34778899999999999999999999999999999999999999999998 77664 889
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHH
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~ 895 (2114)
+|+||+|||||.| ..|.|+++++..+...+.
T Consensus 359 ~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 359 EYVHRIGRTGRVG--NLGLATSFFNERNINITK 389 (417)
T ss_dssp HHHHHHTTBCC----CCEEEEEEECGGGGGGHH
T ss_pred HHHHhcCccccCC--CCceEEEEEccccHHHHH
Confidence 9999999999987 679999999887754443
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=400.97 Aligned_cols=363 Identities=16% Similarity=0.230 Sum_probs=267.4
Q ss_pred CCCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccC
Q 000129 1310 YPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE 1387 (2114)
Q Consensus 1310 ~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~ 1387 (2114)
..++++++++.++.-..+.....+.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.....
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~ 94 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC
T ss_pred ccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC
Confidence 3456667777888777888888888876 7999999999999999986 5779999999999999999999998876433
Q ss_pred CCceEEEEEcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhccccccccee
Q 000129 1388 TGVMRAVYIAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2114)
Q Consensus 1388 ~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~-~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2114)
.+ ++||++|+++|+.|+++.+++ +... .+..+....|+...........+|+|+||+++..++++. ....+.+++
T Consensus 95 ~~--~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~ 170 (412)
T 3fht_A 95 YP--QCLCLSPTYELALQTGKVIEQ-MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIK 170 (412)
T ss_dssp SC--CEEEECSSHHHHHHHHHHHHH-HTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCC
T ss_pred CC--CEEEECCCHHHHHHHHHHHHH-HHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCc
Confidence 33 899999999999999999984 5443 467888888877665444556799999999998877552 233568999
Q ss_pred EEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCC-CccCcEEEE
Q 000129 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGV-RPVPLEIHI 1544 (2114)
Q Consensus 1467 liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~-rpv~l~~~~ 1544 (2114)
+||+||||++.+..+ ....+..+...++.+.|++++|||+++.. .+........ ..+...... ....+....
T Consensus 171 ~iViDEah~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 171 VFVLDEADVMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp EEEEETHHHHHSTTT-----THHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC-EEECCCGGGSSCTTEEEEE
T ss_pred EEEEeCHHHHhhcCC-----cHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCC-eEEeeccccccccCceEEE
Confidence 999999998876332 22233334445577899999999997642 3333332222 122221111 111222222
Q ss_pred ecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhh
Q 000129 1545 QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (2114)
Q Consensus 1545 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (2114)
.... ...... .....+... ...+++||||++++.|..++..|..
T Consensus 245 ~~~~--~~~~~~-----~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~---------------------------- 288 (412)
T 3fht_A 245 VLCS--SRDEKF-----QALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK---------------------------- 288 (412)
T ss_dssp EECS--SHHHHH-----HHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHH----------------------------
T ss_pred EEcC--ChHHHH-----HHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHh----------------------------
Confidence 1111 111111 111222222 3567899999999999999877632
Q ss_pred HHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------C
Q 000129 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------Y 1698 (2114)
Q Consensus 1625 d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~ 1698 (2114)
.+.++.++||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.| .
T Consensus 289 -------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----------~~~~p~~~~~~~ 351 (412)
T 3fht_A 289 -------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----------NFDLPVDKDGNP 351 (412)
T ss_dssp -------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE----------ESSCCBCSSSSB
T ss_pred -------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE----------EECCCCCCCCCc
Confidence 245689999999999999999999999999999999999999999999999 66666 5
Q ss_pred CHhHHHHhHcccCCCCCCCceEEEEEeecCc-HHHHHHHH
Q 000129 1699 PVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKKFL 1737 (2114)
Q Consensus 1699 s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~-~~~~~~~l 1737 (2114)
+..+|+||+|||||. +..|.|++++...+ ..+++.+.
T Consensus 352 s~~~~~Qr~GR~gR~--g~~g~~~~~~~~~~~~~~~~~i~ 389 (412)
T 3fht_A 352 DNETYLHRIGRTGRF--GKRGLAVNMVDSKHSMNILNRIQ 389 (412)
T ss_dssp CHHHHHHHHTTSSCT--TCCEEEEEEECSHHHHHHHHHHH
T ss_pred chheeecccCcccCC--CCCceEEEEEcChhhHHHHHHHH
Confidence 789999999999997 68899999998765 44444444
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=402.24 Aligned_cols=340 Identities=18% Similarity=0.295 Sum_probs=256.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+...+ .||.+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+.... .+.++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 113 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQCLDIQV--------RETQALILAP 113 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCCchHHHHHHHHHHHhhcc--------CCceEEEEcC
Confidence 4677777776 68999999999999998876 45999999999999999999998764321 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.++....++++..++|+....... ...++|+|+||+++..+.+... ..+..+++||+||||++
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~--~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC--ccHhheeEEEEccHHHH
Confidence 999999999999998888899999999987765432 2467999999999844433322 45678999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecC--CcccccceeEEEeeccCch
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+ .+...+..++ ...+...|++++|||+|+ .+..++......+...... ...+..+.+.+......
T Consensus 192 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (410)
T 2j0s_A 192 LNKGFKEQIYDVY-------RYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE-- 260 (410)
T ss_dssp TSTTTHHHHHHHH-------TTSCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--
T ss_pred HhhhhHHHHHHHH-------HhCccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--
Confidence 76 3444333322 334568899999999874 4444444333333322211 11222333344333222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+.+ +......+++||||++++.+..++..|...+
T Consensus 261 ~~k~~~l~~-----~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 300 (410)
T 2j0s_A 261 EWKFDTLCD-----LYDTLTITQAVIFCNTKRKVDWLTEKMREAN----------------------------------- 300 (410)
T ss_dssp THHHHHHHH-----HHHHHTSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HhHHHHHHH-----HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC-----------------------------------
Confidence 122222222 2233446799999999999999999887642
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||||
T Consensus 301 --~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p~------s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 301 --FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN------NRELYIHRIGRSG 368 (410)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHTTSS
T ss_pred --CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECCCC------CHHHHHHhccccc
Confidence 34678899999999999999999999999999999999999999999998 77664 7889999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHH
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
|.| ..|.++++++..+...+..
T Consensus 369 R~g--~~g~~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 369 RYG--RKGVAINFVKNDDIRILRD 390 (410)
T ss_dssp GGG--CCEEEEEEEEGGGHHHHHH
T ss_pred CCC--CceEEEEEecHHHHHHHHH
Confidence 987 6799999999888665544
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=395.36 Aligned_cols=346 Identities=19% Similarity=0.297 Sum_probs=252.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
|++.+.+.+ .||.+|+|+|.++++.++.++ .+++++||||||||++|+++++..+.... .+.++||++|
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 83 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------ASPQAICLAP 83 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CCccEEEECC
Confidence 567777766 689999999999999998873 67999999999999999999998875431 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
+++|+.|+++.+.++....++.+...+|+.... .....++|+|+||+++..+.+.. ...+.++++||+||||++.+.
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEK-NKQINAQVIVGTPGTVLDLMRRK--LMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT-TSCBCCSEEEECHHHHHHHHHTT--CBCCTTCCEEEEETHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhh-hccCCCCEEEEcHHHHHHHHHcC--CcccccCCEEEEEChhhhcCc
Confidence 999999999999998877788888888875433 23457899999999974444332 245778999999999998763
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ec-CCcccccceeEEEeeccCchhHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FD-NSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~-~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.+ +...+.++ ....+...|++++|||+++ .+..+........... .. ....+..+.+.+... .....+.
T Consensus 161 ~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 231 (395)
T 3pey_A 161 QG--LGDQCIRV---KRFLPKDTQLVLFSATFAD--AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC--KNEADKF 231 (395)
T ss_dssp TT--HHHHHHHH---HHTSCTTCEEEEEESCCCH--HHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC--SSHHHHH
T ss_pred cc--cHHHHHHH---HHhCCCCcEEEEEEecCCH--HHHHHHHHhCCCCeEEEccccccccccccEEEEEc--CchHHHH
Confidence 32 22222222 2334667899999999875 2333332221111111 11 111122222222222 2222222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+ ..+......+++||||++++.+..++..|...+ ..
T Consensus 232 ~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-------------------------------------~~ 269 (395)
T 3pey_A 232 DVL-----TELYGLMTIGSSIIFVATKKTANVLYGKLKSEG-------------------------------------HE 269 (395)
T ss_dssp HHH-----HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHH-----HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-------------------------------------Cc
Confidence 221 122333446899999999999999999887642 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++.......|..+|+||+|||||.|
T Consensus 270 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g- 344 (395)
T 3pey_A 270 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG- 344 (395)
T ss_dssp CEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT-
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC-
Confidence 778899999999999999999999999999999999999999999999 665544445679999999999999987
Q ss_pred CCceEEEEEcCCCcHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~ 895 (2114)
..|.+++++...+...+.
T Consensus 345 -~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 345 -RKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp -CCEEEEEEECSHHHHHHH
T ss_pred -CCceEEEEEechHHHHHH
Confidence 679999999876544433
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=392.51 Aligned_cols=357 Identities=17% Similarity=0.260 Sum_probs=260.6
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
.|.....+.++. ||..|+|+|.++++.+++++ .+++++||||||||++|.++++..+.....++ ++||++|+++|+
T Consensus 11 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~ 88 (395)
T 3pey_A 11 GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP--QAICLAPSRELA 88 (395)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc--cEEEECCCHHHH
Confidence 355566777766 79999999999999999863 77999999999999999999999887633333 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
.|+++.++ .++...++.+...+|+..... ....++|+|+||+++..++++ ....+.++++||+||||.+.+..+
T Consensus 89 ~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~-- 162 (395)
T 3pey_A 89 RQTLEVVQ-EMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQG-- 162 (395)
T ss_dssp HHHHHHHH-HHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTT--
T ss_pred HHHHHHHH-HHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCccc--
Confidence 99999998 566666788888887654332 234679999999999887765 234588899999999998876432
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
+...+..+....+.+.+++++|||+++. ..+..++......+...........+........ ...... .
T Consensus 163 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~ 232 (395)
T 3pey_A 163 ---LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK--NEADKF-----D 232 (395)
T ss_dssp ---HHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS--SHHHHH-----H
T ss_pred ---cHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC--chHHHH-----H
Confidence 3333444445567789999999999864 4555554433322221111122222222222111 111111 1
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+... ...+++||||++++.|..++..|.. .+..+..+||+
T Consensus 233 ~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~~~~~~~~ 276 (395)
T 3pey_A 233 VLTELYGL-MTIGSSIIFVATKKTANVLYGKLKS-----------------------------------EGHEVSILHGD 276 (395)
T ss_dssp HHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCCEEECTT
T ss_pred HHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCcEEEeCCC
Confidence 11222222 3567899999999999998876632 23468999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCC------CHhHHHHhHcccCCCCCC
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY------PVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~------s~~~~lQr~GRAGR~~~~ 1716 (2114)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.|. +..+|+||+|||||. +
T Consensus 277 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----------~~~~p~~~~~~~s~~~~~Qr~GR~gR~--g 344 (395)
T 3pey_A 277 LQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV----------NYDLPTLANGQADPATYIHRIGRTGRF--G 344 (395)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE----------ESSCCBCTTSSBCHHHHHHHHTTSSCT--T
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE----------EcCCCCCCcCCCCHHHhhHhccccccC--C
Confidence 9999999999999999999999999999999999999999 666665 999999999999997 5
Q ss_pred CceEEEEEeecCcHH-HHHHHHHhccCCCCccc
Q 000129 1717 NSGKCVILCHAPRKE-YYKKFLRLTQNPNYYNL 1748 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~-~~~~~lRl~~nP~~y~l 1748 (2114)
..|.|++++...+.. +++.+.+...++....+
T Consensus 345 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 377 (395)
T 3pey_A 345 RKGVAISFVHDKNSFNILSAIQKYFGDIEMTRV 377 (395)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHTTSCCCEEC
T ss_pred CCceEEEEEechHHHHHHHHHHHHhCCceeecC
Confidence 789999999876544 44444454444544433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=396.04 Aligned_cols=348 Identities=14% Similarity=0.244 Sum_probs=260.1
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
-..|.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|++|+++.+.....+. ++||++|+++|
T Consensus 41 ~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~-~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~Pt~~L 117 (410)
T 2j0s_A 41 TMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQVRET--QALILAPTREL 117 (410)
T ss_dssp GGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTSCSC--CEEEECSSHHH
T ss_pred hcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCCchHHHHHHHHHHHhhccCCc--eEEEEcCcHHH
Confidence 34466666777765 79999999999999999854 5999999999999999999998876432333 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|+++.++ .++...++++..++|+..... . ....++|+|+||+++..++++. ...+.++++||+||||.+.+.
T Consensus 118 ~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 118 AVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp HHHHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHH-HHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHHhh
Confidence 999999998 577667889999998876542 2 2245699999999998887763 345788999999999998765
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcC---CCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~---~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
. +...+..+...++...+++++|||+++. +.+++.. .+..+........+..+...+........ ..
T Consensus 195 ~------~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~ 264 (410)
T 2j0s_A 195 G------FKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW--KF 264 (410)
T ss_dssp T------THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH--HH
T ss_pred h------hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh--HH
Confidence 4 2334444555567789999999999753 2222221 11111111111111222222222211111 11
Q ss_pred HhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1557 ~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
..+..+... ...+++||||++++.|..++..|.. .+.++
T Consensus 265 -----~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~ 303 (410)
T 2j0s_A 265 -----DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------ANFTV 303 (410)
T ss_dssp -----HHHHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCC
T ss_pred -----HHHHHHHHh-cCCCcEEEEEcCHHHHHHHHHHHHh-----------------------------------CCCce
Confidence 112222233 3456899999999999988876632 24568
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~--g 371 (410)
T 2j0s_A 304 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII----------NYDLPNNRELYIHRIGRSGRY--G 371 (410)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHTTSSGG--G
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE----------EECCCCCHHHHHHhcccccCC--C
Confidence 9999999999999999999999999999999999999999999999 788999999999999999998 5
Q ss_pred CceEEEEEeecCcHHHHHHHHHhc
Q 000129 1717 NSGKCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
..|.|++++.+.+...++.+.+..
T Consensus 372 ~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 372 RKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp CCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred CceEEEEEecHHHHHHHHHHHHHh
Confidence 899999999999888877776543
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=433.47 Aligned_cols=365 Identities=26% Similarity=0.437 Sum_probs=280.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.++++ ++++++||||||||++|++++...+.. ++ +++|++|+++|+.|+++++++.|+ ++
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~---g~--~vlvl~PtraLa~Q~~~~l~~~~~---~~ 109 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRN---MT--KTIYTSPIKALSNQKFRDFKETFD---DV 109 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHT---TC--EEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhc---CC--eEEEEeCCHHHHHHHHHHHHHHcC---CC
Confidence 4899999999999875 569999999999999999999887654 44 999999999999999999986553 67
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhhcC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~~~ 1499 (2114)
+++.++|+...+ ..++|+|+||+++..++.+ ....+.++++|||||||++.++ +|..++.++.. ++
T Consensus 110 ~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~-------l~ 176 (997)
T 4a4z_A 110 NIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM-------LP 176 (997)
T ss_dssp CEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH-------SC
T ss_pred eEEEEeCCCccC----CCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHh-------cc
Confidence 899999987654 4579999999999877765 3446889999999999999875 68888876643 36
Q ss_pred CCceEEEEcccCCChhHHHHHhcCCC-CceeecCCCCCccCcEEEEeccccc-------------chHHHH---------
Q 000129 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDIT-------------NFEARM--------- 1556 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~dla~wl~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~-------------~~~~~~--------- 1556 (2114)
.+.++|+||||++|+.++++|++... ..++.+....||+|+..++...... .+....
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 78999999999999999999998643 5677788889999998776421100 000000
Q ss_pred ------------------------------------------------------------HhcCHHHHHHHHHHh--cCC
Q 000129 1557 ------------------------------------------------------------QAMTKPTFTAIVQHA--KNE 1574 (2114)
Q Consensus 1557 ------------------------------------------------------------~~~~~~~~~~i~~~l--~~~ 1574 (2114)
....+..+..+...+ ...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 001122233343333 244
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhh----Hhh--------hhHHHHHHHhccceEeecCC
Q 000129 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF----IDN--------IQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1575 ~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~----~~~--------i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
.++||||+|++.|+.++..|.......... ...+..+ ... .....+...+..||++|||+
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e--------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKE--------KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHH--------HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 699999999999999997774311100000 0011111 111 12245677888999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++.+|..+++.|++|.++|||||+++++|||+|++.+|+.+...||+. .+.|.+..+|+||+|||||.|.+..|.|+
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~--~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGN--GLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETT--EEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCc--cCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 9999999999999999999999999999999999999999999999987 45689999999999999999888999999
Q ss_pred EEee--cCcHHHHHHHH
Q 000129 1723 ILCH--APRKEYYKKFL 1737 (2114)
Q Consensus 1723 il~~--~~~~~~~~~~l 1737 (2114)
+++. ..+...+++++
T Consensus 487 ~l~~~~~~~~~~~~~~i 503 (997)
T 4a4z_A 487 VMAYNSPLSIATFKEVT 503 (997)
T ss_dssp EECCSSCCCHHHHHHHH
T ss_pred EecCCCcchHHHHHHHh
Confidence 9994 33556666665
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=394.08 Aligned_cols=338 Identities=21% Similarity=0.302 Sum_probs=254.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+.+ .||.+|+|+|.++++.++.+. +++++||||||||++|+++++..+.... .+.+++|++|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~ 98 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPT 98 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCccEEEEcCC
Confidence 566666666 699999999999999988774 5999999999999999999998875421 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++|+.|+++.+.+++...++++..++|+....... ...++|+|+||+++ +.+.+.. ..+.++++||+||||++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFIMDEADKM 175 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEEEeCchHh
Confidence 99999999999998888899999999987654432 35789999999998 4444332 45678999999999988
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCCcccccceeEEEeeccCchh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQYIGIQVKKPL 713 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~~rpv~l~~~~~~~~~~~~~ 713 (2114)
.+ .++..++.++ ...+...+++++|||+| ..+..++......+... .........+.+.+......
T Consensus 176 ~~~~~~~~~~~i~-------~~~~~~~~~i~lSAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 243 (400)
T 1s2m_A 176 LSRDFKTIIEQIL-------SFLPPTHQSLLFSATFP--LTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEER--- 243 (400)
T ss_dssp SSHHHHHHHHHHH-------TTSCSSCEEEEEESCCC--HHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGG---
T ss_pred hhhchHHHHHHHH-------HhCCcCceEEEEEecCC--HHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechh---
Confidence 75 3333333222 23456789999999987 34555554332222211 11222222233333222221
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhc
Q 000129 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2114)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (2114)
.+...+. .+......+++||||++++.+..++..|...+
T Consensus 244 ~k~~~l~-----~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------------ 282 (400)
T 1s2m_A 244 QKLHCLN-----TLFSKLQINQAIIFCNSTNRVELLAKKITDLG------------------------------------ 282 (400)
T ss_dssp GHHHHHH-----HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------------------------------------
T ss_pred hHHHHHH-----HHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------------------------------------
Confidence 2222222 23334457899999999999999999887643
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||
T Consensus 283 -~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~p~------s~~~~~Qr~GR~gR 351 (400)
T 1s2m_A 283 -YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK------TAETYLHRIGRSGR 351 (400)
T ss_dssp -CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHCBSSC
T ss_pred -CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCCCC------CHHHHHHhcchhcC
Confidence 34678899999999999999999999999999999999999999999998 66654 78899999999999
Q ss_pred CCCCCceEEEEEcCCCcHHHHHHh
Q 000129 874 PQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
.| ..|.|+++++..+...+.++
T Consensus 352 ~g--~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 352 FG--HLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp TT--CCEEEEEEECGGGHHHHHHH
T ss_pred CC--CCceEEEEeccchHHHHHHH
Confidence 87 67999999999887665543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=419.72 Aligned_cols=349 Identities=19% Similarity=0.232 Sum_probs=143.3
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.|++.+...+ .||..|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--------~~~~~lil~ 169 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------CCCcEEEEe
Confidence 4677776666 79999999999999999876 578999999999999999999998775432 245899999
Q ss_pred ccHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
|+++|+.|+++.+.++.... ++.+....|+..........++|+|+||+++..+.++.. ...++++++|||||+|++.
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEEEECCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEEEEECHHHHh
Confidence 99999999999998876543 678888888887776666678999999999844443322 2456899999999999987
Q ss_pred cCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEe-ecCC-cccccceeEEEeeccCchhH
Q 000129 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNS-YRPVPLSQQYIGIQVKKPLQ 714 (2114)
Q Consensus 637 d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~-f~~~-~rpv~l~~~~~~~~~~~~~~ 714 (2114)
+..+.. ..+ ...........|+|++|||+++ .+..+.......+... .... ..+..+.+.++..... ..
T Consensus 249 ~~~~~~--~~~---~~i~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 319 (479)
T 3fmp_B 249 ATQGHQ--DQS---IRIQRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR--DE 319 (479)
T ss_dssp TSTTHH--HHH---HHHHTTSCTTSEEEEEESCCCH--HHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred hcCCcH--HHH---HHHHhhCCccceEEEEeCCCCH--HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH--HH
Confidence 633221 111 1223345678999999999885 3333333222222221 1111 1111222222211110 11
Q ss_pred HHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhcc
Q 000129 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (2114)
Q Consensus 715 ~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~ 794 (2114)
+...+.. +......+++||||++++.|..++..|...+
T Consensus 320 ~~~~l~~-----~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~------------------------------------- 357 (479)
T 3fmp_B 320 KFQALCN-----LYGAITIAQAMIFCHTRKTASWLAAELSKEG------------------------------------- 357 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-----HHhhccCCceEEEeCcHHHHHHHHHHHHhCC-------------------------------------
Confidence 1111111 1222335789999999999999998886532
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
.++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.|.++ ..+.+..+|+||+|||||.
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~----~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK----DGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC----ccCCCHHHHHHHhcccccC
Confidence 357788999999999999999999999999999999999999999999994444332 2345788999999999998
Q ss_pred CCCCceEEEEEcCCCcHHHHH
Q 000129 875 QYDSYGEGIIITGHSELRYYL 895 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e~~~~~ 895 (2114)
| ..|.|+++++..+...+.
T Consensus 434 g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 434 G--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ---------------------
T ss_pred C--CCceEEEEEcCcchHHHH
Confidence 7 779999999876644443
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=395.07 Aligned_cols=347 Identities=16% Similarity=0.241 Sum_probs=252.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC----------------C
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET----------------G 1389 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~----------------~ 1389 (2114)
|.....+.+.. ||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...... .
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 44455555544 7999999999999999875 5599999999999999999999887653211 1
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhccccccccee
Q 000129 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2114)
Q Consensus 1390 ~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2114)
.+++||++||++|+.|+++.++ .+....++++..++|+..... + ....++|+|+||+++..++... ...+.+++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEAR-KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--KIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHH-HHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHH-HHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--CcChhhCc
Confidence 2479999999999999999998 455556889999999876542 2 2345699999999998887762 34578899
Q ss_pred EEEecccccccCCCCchHHHHHHHHHHHHhh--cC--CCceEEEEcccCCCh-hHHH-HHhcCCCCceeecCC-CCCccC
Q 000129 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQ--VE--NKIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPP-GVRPVP 1539 (2114)
Q Consensus 1467 liIiDEaH~l~~~~g~~le~i~srl~~i~~~--~~--~~~riV~lSATl~n~-~dla-~wl~~~~~~~~~f~~-~~rpv~ 1539 (2114)
+||+||||++.+.. +...+..+... .+ ...+++++|||+++. ..+. .|++.. . ...... ...+..
T Consensus 178 ~iViDEah~~~~~~------~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 178 YLVLDEADRMLDMG------FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEY-I-FLAVGRVGSTSEN 249 (417)
T ss_dssp EEEESSHHHHHHTT------CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSC-E-EEEEC----CCSS
T ss_pred EEEEEChhHhhccC------cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC-E-EEEeCCCCCCccC
Confidence 99999999887643 22223333321 12 267899999999763 3333 344322 1 111111 111122
Q ss_pred cEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhh
Q 000129 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF 1619 (2114)
Q Consensus 1540 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~ 1619 (2114)
+...+........ ......+......++++||||++++.|..++..|..
T Consensus 250 i~~~~~~~~~~~~--------~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------- 298 (417)
T 2i4i_A 250 ITQKVVWVEESDK--------RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH----------------------- 298 (417)
T ss_dssp EEEEEEECCGGGH--------HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH-----------------------
T ss_pred ceEEEEEeccHhH--------HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH-----------------------
Confidence 2222222211111 111222333334577899999999999998876632
Q ss_pred HhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCC
Q 000129 1620 IDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYP 1699 (2114)
Q Consensus 1620 ~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s 1699 (2114)
.+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+
T Consensus 299 ------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi----------~~~~p~s 356 (417)
T 2i4i_A 299 ------------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSD 356 (417)
T ss_dssp ------------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEE----------ESSCCSS
T ss_pred ------------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----------EEcCCCC
Confidence 245689999999999999999999999999999999999999999999999 7889999
Q ss_pred HhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHHHhc
Q 000129 1700 VTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1700 ~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
..+|+||+|||||. +..|.|++++.+.+...++.+.+.+
T Consensus 357 ~~~~~Qr~GR~gR~--g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 357 IEEYVHRIGRTGRV--GNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp HHHHHHHHTTBCC----CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHhcCccccC--CCCceEEEEEccccHHHHHHHHHHH
Confidence 99999999999998 5789999999988877776666433
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=418.65 Aligned_cols=354 Identities=17% Similarity=0.231 Sum_probs=159.4
Q ss_pred CCCCccCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCC
Q 000129 1311 PPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388 (2114)
Q Consensus 1311 ~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~ 1388 (2114)
.++.++.++.+++...|....++.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+......
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~ 162 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 162 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCS
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCC
Confidence 455666777888888888888888877 7999999999999999975 57899999999999999999999888763333
Q ss_pred CceEEEEEcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeE
Q 000129 1389 GVMRAVYIAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (2114)
Q Consensus 1389 ~~~k~l~I~Ptr~La~q~~~~~~~~f~~~-~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (2114)
+++|||+|+++|+.|+++.+++ +... .+..+....|+...........+|+|+||++|..++.+.. ...++++++
T Consensus 163 --~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~ 238 (479)
T 3fmp_B 163 --PQCLCLSPTYELALQTGKVIEQ-MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKV 238 (479)
T ss_dssp --CCEEEECSSHHHHHHHHHHHHH-HHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCE
T ss_pred --CcEEEEeChHHHHHHHHHHHHH-HHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCE
Confidence 3899999999999999999884 4443 4677888888766554444456999999999988876532 345689999
Q ss_pred EEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh-HHHHHhcCCCCceeecCCCCC-ccCcEEEEe
Q 000129 1468 FIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVR-PVPLEIHIQ 1545 (2114)
Q Consensus 1468 iIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~-dla~wl~~~~~~~~~f~~~~r-pv~l~~~~~ 1545 (2114)
||+||+|.+.+..+ ....+..+...++.+.|+|++|||+++.. .++..+...+ ..+....... ...+...+.
T Consensus 239 iViDEah~~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 239 FVLDEADVMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp EEECCHHHHHTSTT-----HHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC--------------
T ss_pred EEEECHHHHhhcCC-----cHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEEeccccccCcCCceEEEE
Confidence 99999998876332 33444455566677899999999998742 4444332221 1111111100 000000000
Q ss_pred cccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhH
Q 000129 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (2114)
Q Consensus 1546 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (2114)
... .... .......+... ...+++||||++++.|..++..|..
T Consensus 313 ~~~--~~~~-----~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~----------------------------- 355 (479)
T 3fmp_B 313 LCS--SRDE-----KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK----------------------------- 355 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeC--CHHH-----HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHh-----------------------------
Confidence 000 0000 00011111222 2457899999999999888866522
Q ss_pred HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------CC
Q 000129 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------YP 1699 (2114)
Q Consensus 1626 ~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~s 1699 (2114)
.+.++.++||+|++.+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.| .+
T Consensus 356 ------~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI----------~~d~p~~~~~~~s 419 (479)
T 3fmp_B 356 ------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----------NFDLPVDKDGNPD 419 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE----------EecCCCCCccCCC
Confidence 245689999999999999999999999999999999999999999999999 67776 56
Q ss_pred HhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1700 VTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1700 ~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
..+|+||+|||||. +..|.|++++...+
T Consensus 420 ~~~~~Qr~GRagR~--g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 420 NETYLHRIGRTGRF--GKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhcccccC--CCCceEEEEEcCcc
Confidence 78999999999997 68899999998765
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=399.59 Aligned_cols=340 Identities=19% Similarity=0.327 Sum_probs=243.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++++.+.+ .||..|+++|.++++.++.+. +++++||||||||++|++++++.+.... .+.+++|++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 116 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAISILQQIELDL--------KATQALVLAP 116 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCC-CEEEECCCCCcccHHHHHHHHHHHhhcC--------CceeEEEEeC
Confidence 4677777776 689999999999999988765 4999999999999999999998875431 2347999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+++|+.|+++.+.+++...++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++||+||||
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~~vViDEah 193 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIKMFVLDEAD 193 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCCEEEECSHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCcEEEEECHH
Confidence 999999999999998888899999999987654432 25789999999997 5555533 345678999999999
Q ss_pred cccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeec--CCcccccceeEEEeeccC
Q 000129 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVK 710 (2114)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~ 710 (2114)
++.+ .++..+..++ .......|+++||||+++ .+..+............. ....+..+.+.+......
T Consensus 194 ~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIF-------QKLNSNTQVVLLSATMPS--DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264 (414)
T ss_dssp HHHHTTTHHHHHHHH-------TTSCTTCEEEEECSCCCH--HHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS
T ss_pred HhhccCcHHHHHHHH-------HhCCCCCeEEEEEEecCH--HHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH
Confidence 9875 4554444433 334678999999999873 444444433223322221 112222333444333222
Q ss_pred chhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhh
Q 000129 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (2114)
. .+...+ ..+......+++||||++++.+..++..|...+
T Consensus 265 ~--~~~~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--------------------------------- 304 (414)
T 3eiq_A 265 E--WKLDTL-----CDLYETLTITQAVIFINTRRKVDWLTEKMHARD--------------------------------- 304 (414)
T ss_dssp T--THHHHH-----HHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---------------------------------
T ss_pred H--hHHHHH-----HHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---------------------------------
Confidence 1 122221 123344456799999999999999998886532
Q ss_pred hhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcc
Q 000129 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2114)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||
T Consensus 305 ----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~p~------s~~~~~Qr~GR 370 (414)
T 3eiq_A 305 ----FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDLPT------NRENYIHRIGR 370 (414)
T ss_dssp ----CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSCCS------STHHHHHHSCC
T ss_pred ----CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCCCC------CHHHhhhhcCc
Confidence 35778899999999999999999999999999999999999999999998 66554 67889999999
Q ss_pred cCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 871 AGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 871 AGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
|||.| ..|.|+++++..+...+..+
T Consensus 371 ~gR~g--~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 371 GGRFG--RKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp C---------CEEEEECSTHHHHHHHH
T ss_pred ccCCC--CCceEEEEEcHHHHHHHHHH
Confidence 99987 67999999999887666543
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=385.41 Aligned_cols=345 Identities=20% Similarity=0.252 Sum_probs=260.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|.....+.++. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+.....+. ++||++|+++|+.
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~~ 103 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKLNKI--QALIMVPTRELAL 103 (400)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhccCCc--cEEEEcCCHHHHH
Confidence 355566777765 79999999999999999864 5999999999999999999998876532333 8999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+++.++ .+....++++..++|+..... .....++|+|+||+++..++.+ ....+.++++||+||||++.+..
T Consensus 104 q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~- 179 (400)
T 1s2m_A 104 QTSQVVR-TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD- 179 (400)
T ss_dssp HHHHHHH-HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH-
T ss_pred HHHHHHH-HHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhc-
Confidence 9999998 455556889999999876542 2235669999999999877765 23457889999999999886532
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhc
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 1559 (2114)
+...+..+...++...+++++|||++.. ..+..+++.. .............+...+....... ..
T Consensus 180 -----~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---k~--- 246 (400)
T 1s2m_A 180 -----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEINLMEELTLKGITQYYAFVEERQ---KL--- 246 (400)
T ss_dssp -----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEESCCSSCBCTTEEEEEEECCGGG---HH---
T ss_pred -----hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCC--eEEEeccccccCCceeEEEEechhh---HH---
Confidence 3334445555566789999999999753 1233344322 1122222222222332222221111 00
Q ss_pred CHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEee
Q 000129 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2114)
Q Consensus 1560 ~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~ 1639 (2114)
.....+... ...+++||||++++.+..++..|.. .+.++..+
T Consensus 247 --~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~ 288 (400)
T 1s2m_A 247 --HCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITD-----------------------------------LGYSCYYS 288 (400)
T ss_dssp --HHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEE
T ss_pred --HHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHh-----------------------------------cCCCeEEe
Confidence 112223333 4567899999999999988876632 24578999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCce
Q 000129 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1640 H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi----------~~~~p~s~~~~~Qr~GR~gR~--g~~g 356 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----------NFDFPKTAETYLHRIGRSGRF--GHLG 356 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHCBSSCT--TCCE
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE----------EeCCCCCHHHHHHhcchhcCC--CCCc
Confidence 9999999999999999999999999999999999999999999 788999999999999999998 5789
Q ss_pred EEEEEeecCcHHHHHHHHHhc
Q 000129 1720 KCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1720 ~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
.|++++...+...++++.+..
T Consensus 357 ~~~~l~~~~~~~~~~~i~~~~ 377 (400)
T 1s2m_A 357 LAINLINWNDRFNLYKIEQEL 377 (400)
T ss_dssp EEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEeccchHHHHHHHHHHh
Confidence 999999999888877777543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=424.26 Aligned_cols=469 Identities=15% Similarity=0.175 Sum_probs=308.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++.+...+ .+ ..|+++|+++++.++.++++++++||||||||++ +|++-...... . ..+.+++|++|+
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~-~-----~~g~~ilvl~P~ 149 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMP-H-----LENTQVACTQPR 149 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCG-G-----GGTCEEEEEESC
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccc-c-----CCCceEEecCch
Confidence 355566555 34 6789999999999999999999999999999994 44441111110 0 023579999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCC-CccChhhhccceEEEcCHhHHH-HHHhccCCCcccccccEEEEeccccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd-~~~~~~~~~~~~IiV~TPek~d-~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|+.|+++++.+.++ +.++..+|. ..........++|+|+||+++. .+... ..+.++++|||||+|.
T Consensus 150 r~La~q~~~~l~~~~~---~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDEah~--- 219 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMD---VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDEAHE--- 219 (773)
T ss_dssp HHHHHHHHHHHHHHTT---CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECSGGG---
T ss_pred HHHHHHHHHHHHHHhC---CchhheecceeccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecCccc---
Confidence 9999999998876553 333222221 1122222357899999999863 33332 4688899999999995
Q ss_pred CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHH
Q 000129 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2114)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2114)
|+...+.++..+ +.+....++.++|+||||+ +.+.++.|++.. .++.... +..|+.+.+........ ..
T Consensus 220 -R~ld~d~~~~~l-~~l~~~~~~~~iIl~SAT~-~~~~l~~~~~~~---~vi~v~g--r~~pv~~~~~~~~~~~~---~~ 288 (773)
T 2xau_A 220 -RTLATDILMGLL-KQVVKRRPDLKIIIMSATL-DAEKFQRYFNDA---PLLAVPG--RTYPVELYYTPEFQRDY---LD 288 (773)
T ss_dssp -CCHHHHHHHHHH-HHHHHHCTTCEEEEEESCS-CCHHHHHHTTSC---CEEECCC--CCCCEEEECCSSCCSCH---HH
T ss_pred -cccchHHHHHHH-HHHHHhCCCceEEEEeccc-cHHHHHHHhcCC---CcccccC--cccceEEEEecCCchhH---HH
Confidence 222222222222 2222334678999999998 568888888632 2333333 34455554443322221 11
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+...+.+ +.....++++||||+++++++.++..|....... .. ........+
T Consensus 289 ~~l~~l~~-~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l----------------~~----------~~~~~~~~v 341 (773)
T 2xau_A 289 SAIRTVLQ-IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL----------------VR----------EEGCGPLSV 341 (773)
T ss_dssp HHHHHHHH-HHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH----------------HH----------HHCCCCEEE
T ss_pred HHHHHHHH-HHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh----------------cc----------cccCCCeEE
Confidence 11222222 2223347899999999999999999997642110 00 000112458
Q ss_pred EEecCCCCHHHHHHHHHHHh-----CCCceEEEechHhhhhcCCCceEEEEecce----eccCCCCcc----ccCCHHHH
Q 000129 798 AIHHAGMTRGDRQLVEDLFG-----DGHVQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGAW----TELSPLDI 864 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~-----~g~i~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~~----~~~s~~~~ 864 (2114)
..+||+|++.+|..+++.|+ +|.++|||||+++++|||+|++++||+++. .||+..|.. .++|..+|
T Consensus 342 ~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 342 YPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA 421 (773)
T ss_dssp EEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHH
T ss_pred EEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHH
Confidence 89999999999999999999 999999999999999999999999999644 589887644 37899999
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHhhccccChHHHHHHHHhhHHHHhh
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2114)
+||+|||||. ..|.||++++..+. ...+.....| | -+...|...+.....+| +.
T Consensus 422 ~QR~GRaGR~---~~G~~~~l~~~~~~--~~~l~~~~~p-E-i~r~~L~~~~L~l~~~g-i~------------------ 475 (773)
T 2xau_A 422 QQRAGRAGRT---RPGKCFRLYTEEAF--QKELIEQSYP-E-ILRSNLSSTVLELKKLG-ID------------------ 475 (773)
T ss_dssp HHHHHGGGSS---SSEEEEESSCHHHH--HHTSCSSCCC-G-GGGSCCHHHHHHHHHTT-CC------------------
T ss_pred HhhccccCCC---CCCEEEEEecHHHh--cccccccCCC-c-cccCcHHHHHHHHHHcC-CC------------------
Confidence 9999999997 58999999975442 1222222222 1 11122222222211111 11
Q ss_pred ccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCC
Q 000129 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2114)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2114)
++..+ +.++.+..+.+..|+..|...|+|+.+ | .+|++|+++|.||++|.++++++.+....|
T Consensus 476 --~~~~f----------~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c 538 (773)
T 2xau_A 476 --DLVHF----------DFMDPPAPETMMRALEELNYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQC 538 (773)
T ss_dssp --CGGGC----------CCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTC
T ss_pred --Chhhc----------cccCCCcHHHHHHHHHHHHHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccCc
Confidence 11001 111222346789999999999999633 3 699999999999999999999998877666
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHH
Q 000129 1025 GDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (2114)
Q Consensus 1025 ~~~~~l~i~s~s~ef~~i~~r~~e~~~l 1052 (2114)
. .+++.|+|+.+ +.++.+|+.++.+.
T Consensus 539 ~-~~~l~i~a~ls-~~~~f~~~~~~~~~ 564 (773)
T 2xau_A 539 S-QEILTIVAMLS-VPNVFIRPTKDKKR 564 (773)
T ss_dssp H-HHHHHHHHHHT-SCCCBCCCTTCHHH
T ss_pred h-hHHHHHHHhcc-cCCcccCChHHHHH
Confidence 4 67777777765 46777777655443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=388.25 Aligned_cols=337 Identities=20% Similarity=0.266 Sum_probs=249.3
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+...+ .||.+|+|+|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 84 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCH 84 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCeeEEEECC
Confidence 3567777766 58999999999999998876 56999999999999999999998864321 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+.++++||+||||
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vViDEaH 162 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECD 162 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCSEEEECSHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--ccccccCEEEEeCHH
Confidence 9999999999999887655 78999999987654432 1347999999999855544432 357789999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHhhccccccEEEEccccCCh-HH-HHHHHhccccCceEe-ecCCc--ccccceeEEEeec
Q 000129 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-ED-VALFLRVNLEKGLFY-FDNSY--RPVPLSQQYIGIQ 708 (2114)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~-~d-va~~l~~~~~~~~~~-f~~~~--rpv~l~~~~~~~~ 708 (2114)
++.+.. .+...+.+ .....+...+++++|||+++. .. +..++. .+... ..... ....+.+.+....
T Consensus 163 ~~~~~~--~~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 163 KMLEQL--DMRRDVQE---IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ----DPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp HHTSSH--HHHHHHHH---HHHTSCSSSEEEEEESSCCSTHHHHHHHHCS----SCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred HHhhcc--chHHHHHH---HHhhCCCCceEEEEEeeCCHHHHHHHHHHcC----CCeEEEecCccccCcccceEEEEEcC
Confidence 987531 12222222 223345688999999999862 22 223332 22222 22221 2223344443332
Q ss_pred cCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcch
Q 000129 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2114)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (2114)
.. .+...+ .+ +.....++++||||++++.+..++..|...+
T Consensus 234 ~~---~~~~~l----~~-~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------- 274 (391)
T 1xti_A 234 DN---EKNRKL----FD-LLDVLEFNQVVIFVKSVQRCIALAQLLVEQN------------------------------- 274 (391)
T ss_dssp GG---GHHHHH----HH-HHHHSCCSEEEEECSCHHHHHHHHHHHHHTT-------------------------------
T ss_pred ch---hHHHHH----HH-HHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC-------------------------------
Confidence 22 122222 22 2233467899999999999999999887643
Q ss_pred hhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhh
Q 000129 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2114)
Q Consensus 789 L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2114)
..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+
T Consensus 275 ------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~p~------s~~~~~Qr~ 338 (391)
T 1xti_A 275 ------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRV 338 (391)
T ss_dssp ------CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSCCS------SHHHHHHHH
T ss_pred ------CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHhc
Confidence 23677899999999999999999999999999999999999999999998 66654 788999999
Q ss_pred cccCCCCCCCceEEEEEcCCCcHHHH
Q 000129 869 GRAGRPQYDSYGEGIIITGHSELRYY 894 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~e~~~~ 894 (2114)
|||||.| ..|.++++++..+...+
T Consensus 339 GR~~R~g--~~g~~~~~~~~~~~~~~ 362 (391)
T 1xti_A 339 ARAGRFG--TKGLAITFVSDENDAKI 362 (391)
T ss_dssp CBCSSSC--CCCEEEEEECSHHHHHH
T ss_pred ccccCCC--CceEEEEEEcccchHHH
Confidence 9999987 67999999987654433
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=408.17 Aligned_cols=366 Identities=17% Similarity=0.235 Sum_probs=266.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~L 1402 (2114)
|.....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 44455555544 7999999999999999953 567999999999999999999999887642 1223589999999999
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEEEcCCcccch--hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccc
Q 000129 1403 AKERYRDWEIKFGQ---GLGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~---~~g~~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~ 1475 (2114)
+.|+++.+++.+.. .....+..+.|+..... ..+ ..++|+|+||+++..++.+.. ...+..+++||+||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc-ccccccCCEEEEEChHH
Confidence 99999999964421 22456777777765432 222 357999999999988777642 33578899999999999
Q ss_pred ccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceee-cCCCCCc---cCcEEEEecccc
Q 000129 1476 IGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFN-FPPGVRP---VPLEIHIQGVDI 1549 (2114)
Q Consensus 1476 l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~-f~~~~rp---v~l~~~~~~~~~ 1549 (2114)
+.++ .++.++.++..+.........+.|+++||||+++. ..++.++...+..++. ......+ ..+.......
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 264 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS-- 264 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE--
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe--
Confidence 9876 36677777777766544445688999999999874 4555554433322221 1111111 1111111111
Q ss_pred cchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000129 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2114)
Q Consensus 1550 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2114)
.................+... ..+.++||||+|++.|..++..|.....
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------------ 313 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------ 313 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHT------------------------------
T ss_pred cchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhc------------------------------
Confidence 111111111111112222221 4567899999999999999977743211
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcc
Q 000129 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2114)
Q Consensus 1630 ~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2114)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+||
T Consensus 314 --~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 314 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIGR 381 (579)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHTT
T ss_pred --CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEE----------EcCCCCCHHHhhhhccc
Confidence 134689999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred cCCCCCCCceEEEEEeecCcHHHHHHHHHhc
Q 000129 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1710 AGR~~~~~~G~~iil~~~~~~~~~~~~lRl~ 1740 (2114)
|||. +..|.|++++...+..+++.+.+..
T Consensus 382 agR~--g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 382 TARS--GKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp SSCT--TCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cccC--CCCceEEEEEcccHHHHHHHHHHHh
Confidence 9998 5799999999998888887776543
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=394.47 Aligned_cols=351 Identities=17% Similarity=0.269 Sum_probs=246.2
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
-..+.....+.+.. ||..|+|+|.++++.++++.+ ++++||||||||++|.+++++.+......+ +++|++|+++|
T Consensus 44 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L 120 (414)
T 3eiq_A 44 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDLKAT--QALVLAPTREL 120 (414)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCC-EEECCCSCSSSHHHHHHHHHHHCCTTSCSC--CEEEECSSHHH
T ss_pred hCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCC-EEEECCCCCcccHHHHHHHHHHHhhcCCce--eEEEEeChHHH
Confidence 33455566666654 799999999999999998554 999999999999999999999887633334 89999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccchh--hc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK--LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~--~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+.|+++.++ .++...+..+..+.|+...... .+ ..++|+|+||+++..++.+ ....+.++++||+||||.+.+
T Consensus 121 ~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 121 AQQIQKVVM-ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp HHHHHHHHH-HHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHH-HHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhc
Confidence 999999999 4665568888888887665421 22 4569999999998877765 234577899999999998865
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHH
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.. +...+..+...++.+.|+|++|||+++. ..+...+......+........+..+.............
T Consensus 198 ~~------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 267 (414)
T 3eiq_A 198 RG------FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK---- 267 (414)
T ss_dssp TT------THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH----
T ss_pred cC------cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH----
Confidence 43 3344455556667889999999999753 233332222221111111111222222222211111110
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
...+..+... ...+++||||++++.|..++..|.. .+.++.
T Consensus 268 ---~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~~~ 308 (414)
T 3eiq_A 268 ---LDTLCDLYET-LTITQAVIFINTRRKVDWLTEKMHA-----------------------------------RDFTVS 308 (414)
T ss_dssp ---HHHHHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHT-----------------------------------TTCCCE
T ss_pred ---HHHHHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCeEE
Confidence 1112223333 3567899999999999998876632 245689
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+||+|+..+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +.
T Consensus 309 ~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~--g~ 376 (414)
T 3eiq_A 309 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----------NYDLPTNRENYIHRIGRGGRF--GR 376 (414)
T ss_dssp EC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE----------ESSCCSSTHHHHHHSCCC-------
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE----------EeCCCCCHHHhhhhcCcccCC--CC
Confidence 999999999999999999999999999999999999999999999 788999999999999999997 57
Q ss_pred ceEEEEEeecCcHHHHHHHHHhcc
Q 000129 1718 SGKCVILCHAPRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~~~~~~lRl~~ 1741 (2114)
.|.|++++...+...++.+.+...
T Consensus 377 ~g~~~~~~~~~~~~~~~~~~~~~~ 400 (414)
T 3eiq_A 377 KGVAINMVTEEDKRTLRDIETFYN 400 (414)
T ss_dssp --CEEEEECSTHHHHHHHHHHHTT
T ss_pred CceEEEEEcHHHHHHHHHHHHHHc
Confidence 899999999998888887765443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=383.22 Aligned_cols=335 Identities=21% Similarity=0.356 Sum_probs=252.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++...+ .||.+|+|+|.++++.++.++.+++++||||||||++|+++++..+... .+.+++|++|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~lil~P~ 83 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPT 83 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECSC
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCcEEEEcCC
Confidence 567777776 6899999999999999998877899999999999999999998876532 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++....... ...+.++++||+||||.+.+
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhhh
Confidence 9999999999999988888999999998765442 2457899999999974333332 23567899999999999876
Q ss_pred -CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH
Q 000129 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.+...+..+ ........+++++|||+++ .+..++........+.. ...+..+.+.+...... .+.
T Consensus 162 ~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~ 227 (367)
T 1hv8_A 162 MGFIKDVEKI-------LNACNKDKRILLFSATMPR--EILNLAKKYMGDYSFIK--AKINANIEQSYVEVNEN---ERF 227 (367)
T ss_dssp TTTHHHHHHH-------HHTSCSSCEEEEECSSCCH--HHHHHHHHHCCSEEEEE--CCSSSSSEEEEEECCGG---GHH
T ss_pred hchHHHHHHH-------HHhCCCCceEEEEeeccCH--HHHHHHHHHcCCCeEEE--ecCCCCceEEEEEeChH---HHH
Confidence 333333332 2334578899999999874 23333322211212211 11222344444433322 222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+.+. + . ..++++||||++++.+..++..|...+ .+
T Consensus 228 ~~l~~~----l-~-~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------------------~~ 264 (367)
T 1hv8_A 228 EALCRL----L-K-NKEFYGLVFCKTKRDTKELASMLRDIG-------------------------------------FK 264 (367)
T ss_dssp HHHHHH----H-C-STTCCEEEECSSHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHHHHH----H-h-cCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CC
Confidence 222211 1 1 236789999999999999999887632 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||.|
T Consensus 265 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g- 333 (367)
T 1hv8_A 265 AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ------NPESYMHRIGRTGRAG- 333 (367)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS------CHHHHHHHSTTTCCSS-
T ss_pred eEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecCCC------CHHHhhhcccccccCC-
Confidence 778899999999999999999999999999999999999999999998 66554 7889999999999987
Q ss_pred CCceEEEEEcCCCcHHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|.++++++..+...+..
T Consensus 334 -~~g~~~~~~~~~~~~~~~~ 352 (367)
T 1hv8_A 334 -KKGKAISIINRREYKKLRY 352 (367)
T ss_dssp -SCCEEEEEECTTSHHHHHH
T ss_pred -CccEEEEEEcHHHHHHHHH
Confidence 6799999999887765544
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=405.15 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=249.6
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
++.+...+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|++.. +.++|||+|+
T Consensus 29 ~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~-d~lv~~pTGsGKTl~~~lpal~~--------------~g~~lVisP~ 93 (591)
T 2v1x_A 29 SGKVKDILQNVFKLEKFRPLQLETINVTMAGK-EVFLVMPTGGGKSLCYQLPALCS--------------DGFTLVICPL 93 (591)
T ss_dssp HHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTC-CEEEECCTTSCTTHHHHHHHHTS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC-CEEEEECCCChHHHHHHHHHHHc--------------CCcEEEEeCH
Confidence 34445444 489999999999999998875 49999999999999999999752 1289999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---------hccceEEEcCHhHHH---HHHhccCCCcccccccEE
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKWD---IITRKSGDRTYTQLVKLL 627 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPek~d---~l~r~~~~~~~l~~v~li 627 (2114)
++|+.|+++.+.+. |+++..++|+....... ...++|+|+|||++. .+.+.......+..+++|
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 99999999999875 78899999987654321 347899999999862 232221112345678999
Q ss_pred EEeccccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCccccccee
Q 000129 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (2114)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~ 702 (2114)
||||||++.+ ++.+.+..+ ..+ ....+..++|+||||+++. .++..+++.. ....+...+....+..
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l-~~l----~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~---~~~~~~~~~~r~nl~~ 241 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKAL-GIL----KRQFPNASLIGLTATATNHVLTDAQKILCIE---KCFTFTASFNRPNLYY 241 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGG-GHH----HHHCTTSEEEEEESSCCHHHHHHHHHHTTCC---SCEEEECCCCCTTEEE
T ss_pred EEECcccccccccccHHHHHHH-HHH----HHhCCCCcEEEEecCCCHHHHHHHHHHhCCC---CcEEEecCCCCcccEE
Confidence 9999999875 256665432 111 1234578999999998763 5667777643 2233444443334433
Q ss_pred EEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhc
Q 000129 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2114)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (2114)
.+.... ....... ..+.+.+.....++++||||+|++.++.++..|...+
T Consensus 242 ~v~~~~-~~~~~~~----~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g------------------------- 291 (591)
T 2v1x_A 242 EVRQKP-SNTEDFI----EDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG------------------------- 291 (591)
T ss_dssp EEEECC-SSHHHHH----HHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEeCC-CcHHHHH----HHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-------------------------
Confidence 322211 1111111 1222223223346799999999999999999987643
Q ss_pred ccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHH
Q 000129 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2114)
Q Consensus 783 ~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.
T Consensus 292 ------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~p~------s~~ 349 (591)
T 2v1x_A 292 ------------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSMSK------SME 349 (591)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSCCS------SHH
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCCCC------CHH
Confidence 34778899999999999999999999999999999999999999999999 77775 889
Q ss_pred HHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhc
Q 000129 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2114)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~ 899 (2114)
+|+||+|||||.| ..|.|+++++..+...+..++.
T Consensus 350 ~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 350 NYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp HHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTT
T ss_pred HHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHh
Confidence 9999999999987 6799999999888777766654
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=379.22 Aligned_cols=339 Identities=21% Similarity=0.337 Sum_probs=258.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.......+.. ||..|+|+|.++++.+++++.+++++||||||||++|.++++..+.. .++ .+++|++|+++|+.|
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~--~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-NNG--IEAIILTPTRELAIQ 89 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-SSS--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-cCC--CcEEEEcCCHHHHHH
Confidence 44444555544 79999999999999999987889999999999999999999987765 223 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.+++.++. .++++..++|+.... ...+..++|+|+||+++...+.+ ....+.+++++|+||||.+.+..
T Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~--- 163 (367)
T 1hv8_A 90 VADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG--- 163 (367)
T ss_dssp HHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT---
T ss_pred HHHHHHHHhCC-CCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhc---
Confidence 99999965543 478888888877643 34455789999999998877765 23457889999999999987654
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 1561 (2114)
+...+..+....+...+++++|||+++. ..+..+++... ... ......+...........
T Consensus 164 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~---------- 225 (367)
T 1hv8_A 164 ---FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS--FIK---AKINANIEQSYVEVNENE---------- 225 (367)
T ss_dssp ---THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE--EEE---CCSSSSSEEEEEECCGGG----------
T ss_pred ---hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe--EEE---ecCCCCceEEEEEeChHH----------
Confidence 3444555555567789999999999764 23444554321 111 111123333322221111
Q ss_pred HHHHHHHHHh-cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1562 PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1562 ~~~~~i~~~l-~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
....+...+ ..++++||||++++.|..++..|.. .+.++..+|
T Consensus 226 -~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~ 269 (367)
T 1hv8_A 226 -RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD-----------------------------------IGFKAGAIH 269 (367)
T ss_dssp -HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEEC
T ss_pred -HHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCeEEee
Confidence 112222222 4567899999999999998876632 245689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
|+++..+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.
T Consensus 270 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~~R~--g~~g~ 337 (367)
T 1hv8_A 270 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----------NYHLPQNPESYMHRIGRTGRA--GKKGK 337 (367)
T ss_dssp SSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----------ESSCCSCHHHHHHHSTTTCCS--SSCCE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE----------EecCCCCHHHhhhcccccccC--CCccE
Confidence 999999999999999999999999999999999999999999 788899999999999999998 57899
Q ss_pred EEEEeecCcHHHHHHHHHhc
Q 000129 1721 CVILCHAPRKEYYKKFLRLT 1740 (2114)
Q Consensus 1721 ~iil~~~~~~~~~~~~lRl~ 1740 (2114)
|++++.+.+...++.+.+..
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~ 357 (367)
T 1hv8_A 338 AISIINRREYKKLRYIERAM 357 (367)
T ss_dssp EEEEECTTSHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHh
Confidence 99999998887777766543
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=375.31 Aligned_cols=341 Identities=15% Similarity=0.182 Sum_probs=252.5
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
.....+.+.. ||..|+|+|.++++.++.+ .+++++||||+|||++|++|++..+...... .++||++|+++|+.|+
T Consensus 16 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~--~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 16 KPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ--VSVLVMCHTRELAFQI 92 (391)
T ss_dssp CHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCTTC--CCEEEECSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccCCC--eeEEEECCCHHHHHHH
Confidence 3344455544 7999999999999999885 5599999999999999999999887653223 3899999999999999
Q ss_pred HHHHHHHhcCC-CCcEEEEEcCCcccch--hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1407 YRDWEIKFGQG-LGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1407 ~~~~~~~f~~~-~g~~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
++.+++ +... .++++..++|+..... ..+ ..++|+|+||+++..++++. ...+.++++||+||||++.++.
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~~~~- 168 (391)
T 1xti_A 93 SKEYER-FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQL- 168 (391)
T ss_dssp HHHHHH-HTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHTSSH-
T ss_pred HHHHHH-HHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHhhcc-
Confidence 999984 5443 3789999999876442 222 23599999999998887763 3457899999999999987542
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hH-HHHHhcCCCCceeecCCCC--CccCcEEEEecccccchHHHHH
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KD-LGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQ 1557 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~d-la~wl~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~ 1557 (2114)
.+...+..+....+...+++++|||+++. .. +..+++... .+...... ....+...+.........
T Consensus 169 ----~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (391)
T 1xti_A 169 ----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM--EIFVDDETKLTLHGLQQYYVKLKDNEKN---- 238 (391)
T ss_dssp ----HHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE--EEECCCCCCCCCTTCEEEEEECCGGGHH----
T ss_pred ----chHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe--EEEecCccccCcccceEEEEEcCchhHH----
Confidence 13344455555566789999999999874 23 344444321 12222221 222333333222211111
Q ss_pred hcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceE
Q 000129 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2114)
Q Consensus 1558 ~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~ 1637 (2114)
.....+... ..++++||||++++.|..++..|.. .+..+.
T Consensus 239 ----~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~ 278 (391)
T 1xti_A 239 ----RKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAI 278 (391)
T ss_dssp ----HHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCEE
T ss_pred ----HHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------CCCcEE
Confidence 112222333 3678899999999999999877632 134588
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC
Q 000129 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2114)
Q Consensus 1638 ~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~ 1717 (2114)
.+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +.
T Consensus 279 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~--g~ 346 (391)
T 1xti_A 279 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRF--GT 346 (391)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE----------ESSCCSSHHHHHHHHCBCSSS--CC
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHhcccccCC--CC
Confidence 999999999999999999999999999999999999999999999 788999999999999999998 57
Q ss_pred ceEEEEEeecCcHH-HHHHHH
Q 000129 1718 SGKCVILCHAPRKE-YYKKFL 1737 (2114)
Q Consensus 1718 ~G~~iil~~~~~~~-~~~~~l 1737 (2114)
.|.|++++.+.+.. +++.+.
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~ 367 (391)
T 1xti_A 347 KGLAITFVSDENDAKILNDVQ 367 (391)
T ss_dssp CCEEEEEECSHHHHHHHHHHH
T ss_pred ceEEEEEEcccchHHHHHHHH
Confidence 99999999876543 344443
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=372.93 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=242.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
||+++.+.+ .||.+|+|+|.++++.++.+ ++++++||||+|||++|++++++. +.+++|++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCC
Confidence 456666666 68999999999999988866 569999999999999999998864 1269999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|+.|+++.+.++....++++..++|+...... ....++|+|+||+++..+.... ...+.++++||+||||++.+
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--SCCGGGCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC--CcchhhCcEEEEEChHHhhc
Confidence 9999999999999888888999999998765443 2456899999999984443332 23567899999999999876
Q ss_pred -CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHH
Q 000129 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.+...+..++. ......+++++|||+|+ .+..++........ .......+..+...++.+..... ..
T Consensus 144 ~~~~~~~~~~~~-------~~~~~~~~~~~SAT~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~- 211 (337)
T 2z0m_A 144 MGFIDDIKIILA-------QTSNRKITGLFSATIPE--EIRKVVKDFITNYE-EIEACIGLANVEHKFVHVKDDWR-SK- 211 (337)
T ss_dssp TTCHHHHHHHHH-------HCTTCSEEEEEESCCCH--HHHHHHHHHSCSCE-EEECSGGGGGEEEEEEECSSSSH-HH-
T ss_pred cccHHHHHHHHh-------hCCcccEEEEEeCcCCH--HHHHHHHHhcCCce-eeecccccCCceEEEEEeChHHH-HH-
Confidence 45444444433 24567788999999874 23333322211111 12222333344444444333211 11
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
.. ......++++||||++++.++.++..|. .
T Consensus 212 -------~~-~~~~~~~~~~lvf~~~~~~~~~l~~~l~-----------------------------------------~ 242 (337)
T 2z0m_A 212 -------VQ-ALRENKDKGVIVFVRTRNRVAKLVRLFD-----------------------------------------N 242 (337)
T ss_dssp -------HH-HHHTCCCSSEEEECSCHHHHHHHHTTCT-----------------------------------------T
T ss_pred -------HH-HHHhCCCCcEEEEEcCHHHHHHHHHHhh-----------------------------------------h
Confidence 11 1223447799999999999988765442 2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCC
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2114)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||.|
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~gR~g- 311 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDAPQ------DLRTYIHRIGRTGRMG- 311 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSCCS------SHHHHHHHHTTBCGGG-
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecCCC------CHHHhhHhcCccccCC-
Confidence 567899999999999999999999999999999999999999999998 66664 7889999999999987
Q ss_pred CCceEEEEEcCCCcHHHHHH
Q 000129 877 DSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 877 d~~G~~iil~~~~e~~~~~~ 896 (2114)
..|.+++++. .+......
T Consensus 312 -~~g~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 312 -RKGEAITFIL-NEYWLEKE 329 (337)
T ss_dssp -CCEEEEEEES-SCHHHHHH
T ss_pred -CCceEEEEEe-CcHHHHHH
Confidence 6799999988 66555544
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=406.37 Aligned_cols=455 Identities=16% Similarity=0.157 Sum_probs=304.9
Q ss_pred cChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHH
Q 000129 1327 LRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2114)
Q Consensus 1327 L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~ 1406 (2114)
+.....+.+......|+++|.++|..++.++++++++||||||||++..+.++..... .+.+.+++|++|+++|+.|+
T Consensus 79 l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~--~~~g~~ilvl~P~r~La~q~ 156 (773)
T 2xau_A 79 FTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP--HLENTQVACTQPRRVAAMSV 156 (773)
T ss_dssp CCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCG--GGGTCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccc--cCCCceEEecCchHHHHHHH
Confidence 3433333333223689999999999999988899999999999999433222222111 11123899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH
Q 000129 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2114)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~ 1486 (2114)
++++...++...+..++.-.. .+.......+|+++||+++...+.. ...+.++++||+||+|. ++...+.
T Consensus 157 ~~~l~~~~~~~v~~~vG~~i~---~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~----R~ld~d~ 226 (773)
T 2xau_A 157 AQRVAEEMDVKLGEEVGYSIR---FENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHE----RTLATDI 226 (773)
T ss_dssp HHHHHHHTTCCBTTTEEEEET---TEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGG----CCHHHHH
T ss_pred HHHHHHHhCCchhheecceec---cccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccc----cccchHH
Confidence 998886665433444432211 1112224669999999998765543 45789999999999995 2222333
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1566 (2114)
++..++.+... ..+.++|++|||+ +.+++++|++... ++... .+..|+++++.......+.... ... ...
T Consensus 227 ~~~~l~~l~~~-~~~~~iIl~SAT~-~~~~l~~~~~~~~--vi~v~--gr~~pv~~~~~~~~~~~~~~~~---l~~-l~~ 296 (773)
T 2xau_A 227 LMGLLKQVVKR-RPDLKIIIMSATL-DAEKFQRYFNDAP--LLAVP--GRTYPVELYYTPEFQRDYLDSA---IRT-VLQ 296 (773)
T ss_dssp HHHHHHHHHHH-CTTCEEEEEESCS-CCHHHHHHTTSCC--EEECC--CCCCCEEEECCSSCCSCHHHHH---HHH-HHH
T ss_pred HHHHHHHHHHh-CCCceEEEEeccc-cHHHHHHHhcCCC--ccccc--CcccceEEEEecCCchhHHHHH---HHH-HHH
Confidence 44555555433 3578999999999 6789999997543 34333 3455666655443333222111 011 111
Q ss_pred HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHH
Q 000129 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1567 i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
+... ...+++||||++++.|+.++..|...+.. +. ......+..|..+||+|+++
T Consensus 297 ~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~----------------------l~--~~~~~~~~~v~~lhg~l~~~ 351 (773)
T 2xau_A 297 IHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQ----------------------LV--REEGCGPLSVYPLYGSLPPH 351 (773)
T ss_dssp HHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHH----------------------HH--HHHCCCCEEEEEECTTCCHH
T ss_pred HHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHh----------------------hc--ccccCCCeEEEEeCCCCCHH
Confidence 1112 35789999999999999999887542210 00 00001234589999999999
Q ss_pred HHHHHHHHHh-----cCCceEEEecCccccccCCCCcEEEEE----eeeEecCCcCcCC----CCCHhHHHHhHcccCCC
Q 000129 1647 DQEVVSALFE-----AGKIKVCVMSSSMCWGVPLTAHLVVVM----GTQYYDGQENAHT----DYPVTDLLQMMGHASRP 1713 (2114)
Q Consensus 1647 dR~~v~~~F~-----~g~i~VLVaT~~la~Gvdip~~~vVI~----gt~~yd~~~~~~~----~~s~~~~lQr~GRAGR~ 1713 (2114)
+|..+++.|+ +|.++|||||+++++|||+|++.+||. ....|+++.+... |.|..+|+||+|||||.
T Consensus 352 eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp HHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred HHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 9999999999 999999999999999999999999994 5567888766543 89999999999999995
Q ss_pred CCCCceEEEEEeecCcHHHHHHHHHhccCCCCc--------------cccCCCc-cchHHHHHHHHHHHHHHHHHCCCce
Q 000129 1714 LLDNSGKCVILCHAPRKEYYKKFLRLTQNPNYY--------------NLQGVSH-RHLSDHLSELVENTISDLEASKCII 1778 (2114)
Q Consensus 1714 ~~~~~G~~iil~~~~~~~~~~~~lRl~~nP~~y--------------~l~~~s~-~~l~~~lselve~~l~~L~~~~~I~ 1778 (2114)
..|.|++++.+.+. .. .+.-...|... ++.++.. ..++....+.+..++..|...|+|+
T Consensus 432 ---~~G~~~~l~~~~~~--~~-~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald 505 (773)
T 2xau_A 432 ---RPGKCFRLYTEEAF--QK-ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505 (773)
T ss_dssp ---SSEEEEESSCHHHH--HH-TSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBC
T ss_pred ---CCCEEEEEecHHHh--cc-cccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcc
Confidence 79999999975432 11 11111112111 1111100 0111123578899999999999994
Q ss_pred ecCCCccccCcccchhhhcccCHhHHHHHHhhcCCCCChhhHHHHHhcCccccCCCCCcchH
Q 000129 1779 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1840 (2114)
Q Consensus 1779 ~~~~~~~~~t~lG~i~s~y~i~~~T~~~f~~sl~~~~~~~~iL~ils~a~Ef~~i~vR~~E~ 1840 (2114)
.+ -.+|++|+++|.+|++|.++++++.+....+ ...++.|+|.-+ +.++.+|..+.
T Consensus 506 ~~----~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c-~~~~l~i~a~ls-~~~~f~~~~~~ 561 (773)
T 2xau_A 506 DE----GNLTPLGRLASQFPLDPMLAVMLIGSFEFQC-SQEILTIVAMLS-VPNVFIRPTKD 561 (773)
T ss_dssp TT----SCBCHHHHHHTTSSSCHHHHHHHHHGGGGTC-HHHHHHHHHHHT-SCCCBCCCTTC
T ss_pred cC----CCcChhhhhhccccCCHHHHHHHHhhcccCc-hhHHHHHHHhcc-cCCcccCChHH
Confidence 22 3589999999999999999999998665443 566776666544 35555665443
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=396.58 Aligned_cols=328 Identities=18% Similarity=0.287 Sum_probs=246.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+...| ||..|+|+|.++++.++++++ +++.+|||+|||+||++|++. ..+ ++|||+|+++|+.|+++.++
T Consensus 36 L~~~f-g~~~~rp~Q~~~i~~il~g~d-~lv~~pTGsGKTl~~~lpal~------~~g--~~lVisP~~~L~~q~~~~l~ 105 (591)
T 2v1x_A 36 LQNVF-KLEKFRPLQLETINVTMAGKE-VFLVMPTGGGKSLCYQLPALC------SDG--FTLVICPLISLMEDQLMVLK 105 (591)
T ss_dssp HHHTS-CCCSCCTTHHHHHHHHHTTCC-EEEECCTTSCTTHHHHHHHHT------SSS--EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCCHHHHHHHHHHHcCCC-EEEEECCCChHHHHHHHHHHH------cCC--cEEEEeCHHHHHHHHHHHHH
Confidence 44444 599999999999999998655 999999999999999999973 244 99999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcccchh---------hccCCcEEEEChhhHH---HHHhhhcccccccceeEEEecccccccCC
Q 000129 1412 IKFGQGLGMRVVELTGETAMDLK---------LLEKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~~---------~l~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+ + |+++..++|+...... .....+|+|+|||++. .++..+.....+.++++|||||||++.++
T Consensus 106 ~-~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 106 Q-L----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp H-H----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTT
T ss_pred h-c----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccc
Confidence 4 4 6788899998765421 1245699999999884 34443333345678999999999999865
Q ss_pred C---CchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHH
Q 000129 1480 G---GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554 (2114)
Q Consensus 1480 ~---g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~ 1554 (2114)
+ .+.+.. +..+... .++.++|+||||+++. .++..|++......+. .......+...+...... .
T Consensus 181 g~dfr~~~~~----l~~l~~~-~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~~-~-- 250 (591)
T 2v1x_A 181 GHDFRPDYKA----LGILKRQ-FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT--ASFNRPNLYYEVRQKPSN-T-- 250 (591)
T ss_dssp CTTCCGGGGG----GGHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE--CCCCCTTEEEEEEECCSS-H--
T ss_pred ccccHHHHHH----HHHHHHh-CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe--cCCCCcccEEEEEeCCCc-H--
Confidence 3 333322 2222222 3478999999999874 5788888876543333 222222333333322110 0
Q ss_pred HHHhcCHHHHHHHHHHh---cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHH
Q 000129 1555 RMQAMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (2114)
Q Consensus 1555 ~~~~~~~~~~~~i~~~l---~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (2114)
......+...+ ..++++||||+|++.|+.++..|..
T Consensus 251 ------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~----------------------------------- 289 (591)
T 2v1x_A 251 ------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN----------------------------------- 289 (591)
T ss_dssp ------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH-----------------------------------
T ss_pred ------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH-----------------------------------
Confidence 11122233332 2567899999999999999977632
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccC
Q 000129 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2114)
Q Consensus 1632 l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAG 1711 (2114)
.+.++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|| +++.|.++.+|+||+||||
T Consensus 290 ~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI----------~~~~p~s~~~y~Qr~GRaG 359 (591)
T 2v1x_A 290 LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI----------HHSMSKSMENYYQESGRAG 359 (591)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE----------ESSCCSSHHHHHHHHTTSC
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE----------EeCCCCCHHHHHHHhccCC
Confidence 245689999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1712 RPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1712 R~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|. +..|.|++++...+...+..++
T Consensus 360 R~--G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 360 RD--DMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TT--SSCEEEEEEECHHHHHHHHHHT
T ss_pred cC--CCCceEEEEEChHHHHHHHHHH
Confidence 97 6799999999876655544443
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=393.56 Aligned_cols=339 Identities=20% Similarity=0.320 Sum_probs=142.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++...+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|+++.+.... .+.++||++|
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 97 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 97 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCEEEEcC
Confidence 4677777776 589999999999999988874 5999999999999999999998875431 2458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.+++...++++..++|+...... ....++|+|+||+++ +.+.+.. ..+.++++||+||||++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEM 174 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEEChHHh
Confidence 99999999999999888889999999998775443 234789999999997 4444432 45678999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEee-cC-CcccccceeEEEeeccCch
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DN-SYRPVPLSQQYIGIQVKKP 712 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f-~~-~~rpv~l~~~~~~~~~~~~ 712 (2114)
.+ .++..+..++. ......+++++|||+++ ++..+.......+.... .. ...+..+.+.+......
T Consensus 175 ~~~~~~~~~~~~~~-------~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 243 (394)
T 1fuu_A 175 LSSGFKEQIYQIFT-------LLPPTTQVVLLSATMPN--DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE-- 243 (394)
T ss_dssp HHTTCHHHHHHHHH-------HSCTTCEEEEECSSCCH--HHHHHHHHHCCSCEEEEECC--------------------
T ss_pred hCCCcHHHHHHHHH-------hCCCCceEEEEEEecCH--HHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--
Confidence 65 45554444433 24567899999999875 23333222111222111 11 11111222222211111
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhh
Q 000129 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2114)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (2114)
..+...+. .+.+....+++||||++++.+..++..|...+
T Consensus 244 ~~~~~~l~-----~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 283 (394)
T 1fuu_A 244 EYKYECLT-----DLYDSISVTQAVIFCNTRRKVEELTTKLRNDK----------------------------------- 283 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHH-----HHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC-----------------------------------
Confidence 11111111 12223346799999999999999998886532
Q ss_pred ccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccC
Q 000129 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2114)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2114)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||||
T Consensus 284 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~p~------s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 284 --FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGG 351 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHcCccc
Confidence 23567899999999999999999999999999999999999999999998 55443 5668999999999
Q ss_pred CCCCCCceEEEEEcCCCcHHHHHH
Q 000129 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 873 R~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
|.| ..|.|+++++.++...+..
T Consensus 352 R~g--~~g~~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 352 RFG--RKGVAINFVTNEDVGAMRE 373 (394)
T ss_dssp ------------------------
T ss_pred CCC--CCceEEEEEchhHHHHHHH
Confidence 987 6799999999887655544
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=387.59 Aligned_cols=343 Identities=17% Similarity=0.252 Sum_probs=143.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|.+|+++.+.....++ ++||++|+++|+.|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~P~~~L~~q 104 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSVKAP--QALMLAPTRELALQ 104 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccCCCC--CEEEEcCCHHHHHH
Confidence 44556666655 79999999999999999864 5999999999999999999998886633333 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.+.+ +....++++..++|+.... ...+..++|+|+||+++...+.+ ....+.++++||+||||.+.+..
T Consensus 105 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~--- 178 (394)
T 1fuu_A 105 IQKVVMA-LAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG--- 178 (394)
T ss_dssp HHHHHHH-HTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT---
T ss_pred HHHHHHH-HhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCC---
Confidence 9999984 5555688999999987653 33445789999999998877765 23457889999999999886543
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 1561 (2114)
+...+..+...++...+++++|||+++. ..+..|++... .+........+..+........... ...
T Consensus 179 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 247 (394)
T 1fuu_A 179 ---FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKDELTLEGIKQFYVNVEEEE-------YKY 247 (394)
T ss_dssp ---CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC-----------------------------
T ss_pred ---cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCccccCCCceEEEEEcCchh-------hHH
Confidence 2233334444556789999999999863 22334443321 1111111111101111100000000 000
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecC
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~ 1641 (2114)
.....+... ...+++||||++++.|+.++..|.. .+.++..+||
T Consensus 248 ~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~ 291 (394)
T 1fuu_A 248 ECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCeEEEeeC
Confidence 111122222 2457899999999999888865521 1345889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEE
Q 000129 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2114)
Q Consensus 1642 ~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ 1721 (2114)
+|+..+|..+++.|++|..+|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|
T Consensus 292 ~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~--g~~g~~ 359 (394)
T 1fuu_A 292 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRF--GRKGVA 359 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHcCcccCC--CCCceE
Confidence 99999999999999999999999999999999999999999 788899999999999999997 578999
Q ss_pred EEEeecCcHHHHHHHH
Q 000129 1722 VILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1722 iil~~~~~~~~~~~~l 1737 (2114)
++++.+.+...++.+.
T Consensus 360 ~~~~~~~~~~~~~~l~ 375 (394)
T 1fuu_A 360 INFVTNEDVGAMRELE 375 (394)
T ss_dssp ----------------
T ss_pred EEEEchhHHHHHHHHH
Confidence 9999988766655544
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=388.47 Aligned_cols=328 Identities=21% Similarity=0.294 Sum_probs=244.9
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
++.+...+ .||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. ..++|||+|+
T Consensus 10 ~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~~--------------~g~~lvi~P~ 74 (523)
T 1oyw_A 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSPL 74 (523)
T ss_dssp HHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHHh--------------CCCEEEECCh
Confidence 44444444 589999999999999998775 59999999999999999998742 1279999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHH--HHHhccCCCcccccccEEEEe
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIID 630 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d--~l~r~~~~~~~l~~v~liIiD 630 (2114)
++|+.|+++.+.+. |+.+..++|+....... ....+|+|+|||++. .+... ....++++||||
T Consensus 75 ~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~----l~~~~~~~vViD 146 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH----LAHWNPVLLAVD 146 (523)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHH----HTTSCEEEEEES
T ss_pred HHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHH----HhhCCCCEEEEe
Confidence 99999999998764 78899998876644321 245899999999862 11111 123578999999
Q ss_pred ccccccc---CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeecCCcccccceeEEE
Q 000129 631 EIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2114)
Q Consensus 631 EaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2114)
|||++.+ .+.+.+..+. ++. ...++.++++||||+++. .++..+++.. .+........+| .+...+
T Consensus 147 EaH~i~~~g~~fr~~~~~l~-~l~----~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~-~l~~~v- 217 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALG-QLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRP-NIRYML- 217 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGG-GHH----HHCTTSCEEEEESCCCHHHHHHHHHHHTCC--SCEEEECCCCCT-TEEEEE-
T ss_pred CccccCcCCCccHHHHHHHH-HHH----HhCCCCCEEEEeCCCCHHHHHHHHHHhCCC--CCeEEeCCCCCC-ceEEEE-
Confidence 9999975 2555554332 221 223568999999998763 5677777653 223333333333 232222
Q ss_pred eeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccC
Q 000129 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (2114)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 785 (2114)
..... .... +.+.+. ...++++||||+|++.++.++..|...+
T Consensus 218 -~~~~~---~~~~----l~~~l~-~~~~~~~IVf~~sr~~~e~l~~~L~~~g---------------------------- 260 (523)
T 1oyw_A 218 -MEKFK---PLDQ----LMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQSKG---------------------------- 260 (523)
T ss_dssp -EECSS---HHHH----HHHHHH-HTTTCCEEEECSSHHHHHHHHHHHHHTT----------------------------
T ss_pred -EeCCC---HHHH----HHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHHCC----------------------------
Confidence 12111 1222 222222 2356799999999999999999987643
Q ss_pred cchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHH
Q 000129 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM 865 (2114)
Q Consensus 786 ~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~ 865 (2114)
..+..|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.+|+
T Consensus 261 ---------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~p~------s~~~y~ 321 (523)
T 1oyw_A 261 ---------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYY 321 (523)
T ss_dssp ---------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHH
T ss_pred ---------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECCCC------CHHHHH
Confidence 24788999999999999999999999999999999999999999999999 77665 889999
Q ss_pred HhhcccCCCCCCCceEEEEEcCCCcHHHHHHhhcC
Q 000129 866 QMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2114)
Q Consensus 866 Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ll~~ 900 (2114)
||+|||||.| ..|.|+++++..+...+..++.+
T Consensus 322 Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 322 QETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHTTSCTTS--SCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHhccccCCC--CCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999987 67999999998888777777665
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=363.84 Aligned_cols=315 Identities=19% Similarity=0.288 Sum_probs=241.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|.++++.++++ ++++++||||||||++|.+++++. +. +++|++|+++|+.|+++.++ .+...
T Consensus 13 g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~-~~~~~ 82 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL------GM--KSLVVTPTRELTRQVASHIR-DIGRY 82 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH------TC--CEEEECSSHHHHHHHHHHHH-HHTTT
T ss_pred CCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh------cC--CEEEEeCCHHHHHHHHHHHH-HHhhh
Confidence 7999999999999999875 469999999999999999998752 33 89999999999999999998 56656
Q ss_pred CCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~ 1495 (2114)
.+.++..++|+.... ...+..++|+|+||+++..++.+ ....+.++++||+||||++.++. +...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~------~~~~~~~~~ 154 (337)
T 2z0m_A 83 MDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMG------FIDDIKIIL 154 (337)
T ss_dssp SCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTT------CHHHHHHHH
T ss_pred cCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccc------cHHHHHHHH
Confidence 688899999987654 33456789999999999877665 23357889999999999987554 334445555
Q ss_pred hhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcC
Q 000129 1496 SQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2114)
Q Consensus 1496 ~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 1573 (2114)
...+...+++++|||+++. ..+..|++... .+ ........+...+...... . +.....+ .. ..
T Consensus 155 ~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~-~~-~~ 219 (337)
T 2z0m_A 155 AQTSNRKITGLFSATIPEEIRKVVKDFITNYE--EI--EACIGLANVEHKFVHVKDD-W--------RSKVQAL-RE-NK 219 (337)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE--EE--ECSGGGGGEEEEEEECSSS-S--------HHHHHHH-HT-CC
T ss_pred hhCCcccEEEEEeCcCCHHHHHHHHHhcCCce--ee--ecccccCCceEEEEEeChH-H--------HHHHHHH-Hh-CC
Confidence 5567788999999999764 24555554321 11 1112222233222222111 1 1111112 22 46
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHH
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSA 1653 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~ 1653 (2114)
++++||||++++.+..++..| .++..+||+|+..+|..+++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l---------------------------------------~~~~~~~~~~~~~~r~~~~~ 260 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLF---------------------------------------DNAIELRGDLPQSVRNRNID 260 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTC---------------------------------------TTEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCHHHHHHHHHHh---------------------------------------hhhhhhcCCCCHHHHHHHHH
Confidence 788999999999998777332 04788999999999999999
Q ss_pred HHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHH
Q 000129 1654 LFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYY 1733 (2114)
Q Consensus 1654 ~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~ 1733 (2114)
.|++|+++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++. .+..+.
T Consensus 261 ~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~gR~--g~~g~~~~~~~-~~~~~~ 327 (337)
T 2z0m_A 261 AFREGEYDMLITTDVASRGLDIPLVEKVI----------NFDAPQDLRTYIHRIGRTGRM--GRKGEAITFIL-NEYWLE 327 (337)
T ss_dssp HHHTTSCSEEEECHHHHTTCCCCCBSEEE----------ESSCCSSHHHHHHHHTTBCGG--GCCEEEEEEES-SCHHHH
T ss_pred HHHcCCCcEEEEcCccccCCCccCCCEEE----------EecCCCCHHHhhHhcCccccC--CCCceEEEEEe-CcHHHH
Confidence 99999999999999999999999999999 788999999999999999998 57899999998 666666
Q ss_pred HHHH
Q 000129 1734 KKFL 1737 (2114)
Q Consensus 1734 ~~~l 1737 (2114)
+++.
T Consensus 328 ~~i~ 331 (337)
T 2z0m_A 328 KEVK 331 (337)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6554
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=385.22 Aligned_cols=328 Identities=17% Similarity=0.271 Sum_probs=244.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+...| ||..|+|+|.++++.+++++ ++++.+|||||||+||++|++. ..+ ++|||+|+++|+.|+++.++
T Consensus 17 l~~~~-g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~------~~g--~~lvi~P~~aL~~q~~~~l~ 86 (523)
T 1oyw_A 17 LQETF-GYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALL------LNG--LTVVVSPLISLMKDQVDQLQ 86 (523)
T ss_dssp HHHTT-CCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHH------SSS--EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHH------hCC--CEEEECChHHHHHHHHHHHH
Confidence 34444 59999999999999999865 5999999999999999999873 134 89999999999999999888
Q ss_pred HHhcCCCCcEEEEEcCCcccch-----hh--ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchH
Q 000129 1412 IKFGQGLGMRVVELTGETAMDL-----KL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2114)
Q Consensus 1412 ~~f~~~~g~~v~~l~G~~~~~~-----~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~l 1484 (2114)
+ + |+.+..++|+.+.+. .. ....+|+|+|||++... .+.......++++|||||||++.+++ ..+
T Consensus 87 ~-~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--~~~~~l~~~~~~~vViDEaH~i~~~g-~~f 158 (523)
T 1oyw_A 87 A-N----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--NFLEHLAHWNPVLLAVDEAHCISQWG-HDF 158 (523)
T ss_dssp H-T----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--THHHHHTTSCEEEEEESSGGGGCTTS-SCC
T ss_pred H-c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--HHHHHHhhCCCCEEEEeCccccCcCC-Ccc
Confidence 3 3 678888888766431 11 13469999999997421 11112234789999999999997543 222
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHH
Q 000129 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 1562 (2114)
...+.++..+.... ++.+++++|||+++. .++..|++.....++. ....+| .+...+... .... ..
T Consensus 159 r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-~l~~~v~~~--~~~~-------~~ 226 (523)
T 1oyw_A 159 RPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYMLMEK--FKPL-------DQ 226 (523)
T ss_dssp CHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCT-TEEEEEEEC--SSHH-------HH
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCC-ceEEEEEeC--CCHH-------HH
Confidence 22233333333333 468999999999875 5788999876544443 233333 233322221 1100 11
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
....+.. ..++++||||+|++.|+.++..|.. .+..+..|||+
T Consensus 227 l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~-----------------------------------~g~~~~~~h~~ 269 (523)
T 1oyw_A 227 LMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------KGISAAAYHAG 269 (523)
T ss_dssp HHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT
T ss_pred HHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------CCCCEEEecCC
Confidence 1222222 2567999999999999999977732 23468999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|+.++|..+++.|++|+++|||||+++++|+|+|++++|| +++.|.++.+|+||+|||||. +..|.|+
T Consensus 270 l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI----------~~~~p~s~~~y~Qr~GRaGR~--g~~~~~~ 337 (523)
T 1oyw_A 270 LENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRD--GLPAEAM 337 (523)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----------ESSCCSSHHHHHHHHTTSCTT--SSCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE----------EECCCCCHHHHHHHhccccCC--CCCceEE
Confidence 9999999999999999999999999999999999999999 899999999999999999997 5789999
Q ss_pred EEeecCcHHHHHHHHH
Q 000129 1723 ILCHAPRKEYYKKFLR 1738 (2114)
Q Consensus 1723 il~~~~~~~~~~~~lR 1738 (2114)
+++...+...++.++.
T Consensus 338 l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 338 LFYDPADMAWLRRCLE 353 (523)
T ss_dssp EEECHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHh
Confidence 9998877777666664
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=372.07 Aligned_cols=331 Identities=17% Similarity=0.197 Sum_probs=229.3
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 481 ~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
++.++++..| |+ +|+|+|.++++.++.+. |++++||||||||++|+++++..+.. +.++||++|++
T Consensus 9 ~~~~~l~~~~-~~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~-----------~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKF-GK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHH-SS-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT-----------TCCEEEEESSH
T ss_pred HHHHHHHHhc-CC-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC-----------CCEEEEEECCH
Confidence 3445566655 45 79999999999988764 69999999999999999998877622 34899999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCccChh-----h--hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccc
Q 000129 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~-----~--~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
+|+.|+++.+.+++. .|+++..++|+.+.... . ...++|+|+||+++....+. ..+.++++|||||||
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVD 149 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChH
Confidence 999999999999776 89999999999876321 1 12489999999998333332 335579999999999
Q ss_pred cccc------------CCchh-HHHHHHHHHH--HHhhc--cccccEEEEccc-cCCh---HHHHHHHhccccCceEeec
Q 000129 634 LLHD------------NRGPV-LESIVARTVR--QIETT--KEHIRLVGLSAT-LPNY---EDVALFLRVNLEKGLFYFD 692 (2114)
Q Consensus 634 ~l~d------------~rg~~-le~iv~rl~~--~~~~~--~~~~riv~lSAT-lpn~---~dva~~l~~~~~~~~~~f~ 692 (2114)
++.+ ++.+. +..++..+.. ..... ....+++++||| .|.. .-...++..... .
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~ 223 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG------R 223 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS------C
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC------c
Confidence 8752 23333 4444443310 00011 167899999999 4432 112233322211 1
Q ss_pred CCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCch
Q 000129 693 NSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV 772 (2114)
Q Consensus 693 ~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~ 772 (2114)
....+..+.+.+... .+ ...+ .+.+.. .++++||||++++.+..++..|...+.
T Consensus 224 ~~~~~~~i~~~~~~~--~~----~~~l----~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------- 277 (414)
T 3oiy_A 224 LVSVARNITHVRISS--RS----KEKL----VELLEI--FRDGILIFAQTEEEGKELYEYLKRFKF-------------- 277 (414)
T ss_dssp CCCCCCSEEEEEESS--CC----HHHH----HHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTC--------------
T ss_pred cccccccchheeecc--CH----HHHH----HHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCC--------------
Confidence 111122333333322 11 1111 222222 258999999999999999999986532
Q ss_pred hHHHHHhhhcccCcchhhhhccCceE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEEEecc
Q 000129 773 SREILQSHTDMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGT 846 (2114)
Q Consensus 773 ~~~~l~~~~~~~~~~~L~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~ 846 (2114)
.+. .+||. +|. ++.|++|.++|||| |+++++|+|+|+ +++||+
T Consensus 278 -----------------------~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~-- 326 (414)
T 3oiy_A 278 -----------------------NVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF-- 326 (414)
T ss_dssp -----------------------CEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--
T ss_pred -----------------------ceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--
Confidence 234 56774 444 99999999999999 999999999999 999998
Q ss_pred eeccCCCCccccCCHHHHHHhhcccCCCCCC--CceEEEEEcCCCc-HHHHHHhhc
Q 000129 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIITGHSE-LRYYLSLMN 899 (2114)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~~~~e-~~~~~~ll~ 899 (2114)
|+++.+ .+..+|+||+|||||.|.+ +.|.+++++.+.. ...+.+.++
T Consensus 327 --~~~p~~----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 327 --WGTPSG----PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp --ESCCTT----TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred --ECCCCC----CCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 776621 2889999999999999876 5899999994422 234444455
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=361.17 Aligned_cols=317 Identities=15% Similarity=0.152 Sum_probs=224.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
| .|+|+|.++++.+++++ |++++||||||||++|+++++..+.. ++ ++||++|+++|+.|+++.+++ ++. .
T Consensus 20 ~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~---~~--~~lil~Pt~~L~~q~~~~~~~-~~~-~ 90 (414)
T 3oiy_A 20 K-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LAD-E 90 (414)
T ss_dssp S-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHH-HCC-S
T ss_pred C-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC---CC--EEEEEECCHHHHHHHHHHHHH-Hcc-C
Confidence 5 79999999999999854 69999999999999999998876633 34 899999999999999999995 666 6
Q ss_pred CcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC----------C
Q 000129 1419 GMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG----------G 1481 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~----------g 1481 (2114)
|++++.++|+.+.. ...+. .++|+|+||+++..++.. ..+.++++||+||||++.+++ |
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~ 166 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 166 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT
T ss_pred CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchhhhHHhhcC
Confidence 89999999988762 22232 379999999998776654 346689999999999875421 1
Q ss_pred --ch-HHHHHHHHHH--HHhhcC--CCceEEEEcccC-CCh---hHHHHHhcCCCCceeecCCCCCccCcEEEEeccccc
Q 000129 1482 --PV-LEVIVSRMRY--IASQVE--NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT 1550 (2114)
Q Consensus 1482 --~~-le~i~srl~~--i~~~~~--~~~riV~lSATl-~n~---~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~ 1550 (2114)
+. +..++..+.. ....++ .+.+++++|||+ +.. .-+..+++..... ....+..+...+... .
T Consensus 167 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~--~ 239 (414)
T 3oiy_A 167 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS--R 239 (414)
T ss_dssp CCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEESS--C
T ss_pred CcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeecc--C
Confidence 11 2222222210 001111 678999999994 432 1233344422111 111111222222211 1
Q ss_pred chHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH
Q 000129 1551 NFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA 1630 (2114)
Q Consensus 1551 ~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~ 1630 (2114)
. ......+... .++++||||++++.|..++..|..
T Consensus 240 ~---------~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~---------------------------------- 274 (414)
T 3oiy_A 240 S---------KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR---------------------------------- 274 (414)
T ss_dssp C---------HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH----------------------------------
T ss_pred H---------HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 1 1111222222 258999999999999999877632
Q ss_pred HhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCCCC-cEEEEEeeeEecCCcCcCCC--CCHhH
Q 000129 1631 TLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVVMGTQYYDGQENAHTD--YPVTD 1702 (2114)
Q Consensus 1631 ~l~~gV~-~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~-~~vVI~gt~~yd~~~~~~~~--~s~~~ 1702 (2114)
.+..+. .+||. +|+ ++.|++|+++|||| |+++++|+|+|+ +.+|| +++.| .+..+
T Consensus 275 -~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI----------~~~~p~~~~~~~ 337 (414)
T 3oiy_A 275 -FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI----------FWGTPSGPDVYT 337 (414)
T ss_dssp -TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE----------EESCCTTTCHHH
T ss_pred -cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE----------EECCCCCCCHHH
Confidence 134566 88884 444 99999999999999 999999999999 99999 88899 89999
Q ss_pred HHHhHcccCCCCCC--CceEEEEEeecCcHHHHHHHHHh
Q 000129 1703 LLQMMGHASRPLLD--NSGKCVILCHAPRKEYYKKFLRL 1739 (2114)
Q Consensus 1703 ~lQr~GRAGR~~~~--~~G~~iil~~~~~~~~~~~~lRl 1739 (2114)
|+||+|||||.|.+ ..|.|++++ .+...++.+.+.
T Consensus 338 y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~ 374 (414)
T 3oiy_A 338 YIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTR 374 (414)
T ss_dssp HHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHH
T ss_pred HHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHH
Confidence 99999999998755 689999999 444555444433
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=371.28 Aligned_cols=350 Identities=19% Similarity=0.290 Sum_probs=191.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|.+
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCccc------CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 348999999999999876 5699999999999999999999998765321 245899999999999999999999
Q ss_pred hhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r 649 (2114)
++...++++..++|+.....+ ....++|+|+||+++....+... ...+..+++|||||||++.+. ++ +..++.+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~-~~-~~~~~~~ 154 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGN-HP-YNVLMTR 154 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS-CCCSTTCSEEEEETGGGCSTT-SH-HHHHHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc-ccccccCCEEEEECCcccCCc-ch-HHHHHHH
Confidence 998889999999998865432 23578999999999744443321 125788999999999999753 33 5555544
Q ss_pred HHHHH-hhccccccEEEEccccC--ChHHHHHHHhc------cccCceEeecCC-------cccccceeEEEeecc--Cc
Q 000129 650 TVRQI-ETTKEHIRLVGLSATLP--NYEDVALFLRV------NLEKGLFYFDNS-------YRPVPLSQQYIGIQV--KK 711 (2114)
Q Consensus 650 l~~~~-~~~~~~~riv~lSATlp--n~~dva~~l~~------~~~~~~~~f~~~-------~rpv~l~~~~~~~~~--~~ 711 (2114)
.+... ....+..++++||||++ +..++..|+.. ......+..... +.+.+... +..+.. ..
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID-VRLVKRRIHN 233 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEE-EEECCCCSCC
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceE-EEEcCCCcCC
Confidence 43321 22245689999999984 34444444321 101011110000 00001100 000000 00
Q ss_pred hhH--------------------------------------HH-------------------------------------
Q 000129 712 PLQ--------------------------------------RF------------------------------------- 716 (2114)
Q Consensus 712 ~~~--------------------------------------~~------------------------------------- 716 (2114)
... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (556)
T 4a2p_A 234 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 313 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred --------------HH-------------------------------------------hhHHHHHHHHHH---hCCCeE
Q 000129 717 --------------QL-------------------------------------------MNDLCYEKVVAV---AGKHQV 736 (2114)
Q Consensus 717 --------------~~-------------------------------------------~~~~~~~~i~~~---~~~~~v 736 (2114)
.. -...+.+.+.+. ..++++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~ 393 (556)
T 4a2p_A 314 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 393 (556)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceE
Confidence 00 000011111122 346799
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHH
Q 000129 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2114)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2114)
||||+++..+..++..|....... ++ ....+...+...+||+|+..+|..+++.|
T Consensus 394 lVF~~~~~~~~~l~~~L~~~~~~~-----~~--------------------~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 394 LLFAKTRALVSALKKCMEENPILN-----YI--------------------KPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp EEEESSHHHHHHHHHHHTTCSGGG-----SC--------------------CEEC-------------------------
T ss_pred EEEEccHHHHHHHHHHHHhCCCcc-----ee--------------------eeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 999999999999999886531000 00 00112344566779999999999999999
Q ss_pred hC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 817 GD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 817 ~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
++ |.++|||||+++++|||+|++++||+ ||++. ++.+|+||+|| ||. ..|.++++++..+..
T Consensus 449 ~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~p~------s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 449 KTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CCEEEEEC-----------CEEEE----ETCCS------CHHHHHHC------------CCEEEEESCHHHH
T ss_pred cccCceEEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99 99999999999999999999999999 77765 88899999999 996 579999999886643
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=372.72 Aligned_cols=349 Identities=20% Similarity=0.246 Sum_probs=191.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
.-.|+|+|.++++.++++ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 82 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-Q 82 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-c
Confidence 347999999999999885 55999999999999999999999888743222348999999999999999999965543 4
Q ss_pred CcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHHH
Q 000129 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i 1494 (2114)
++++..++|+..... .....++|+|+||+++..++.+ ... .+.++++||+||||++.++. + +..++.++...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLEQ 158 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTS-H-HHHHHHHHHHH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcc-h-HHHHHHHHHHh
Confidence 889999999876542 2335679999999999887765 223 57889999999999997654 3 55554333221
Q ss_pred -HhhcCCCceEEEEcccCC--ChhHHHHHhcCC-------CCceeecCCC---------CCccCcEEEEecccccchH--
Q 000129 1495 -ASQVENKIRIVALSTSLA--NAKDLGEWIGAT-------SHGLFNFPPG---------VRPVPLEIHIQGVDITNFE-- 1553 (2114)
Q Consensus 1495 -~~~~~~~~riV~lSATl~--n~~dla~wl~~~-------~~~~~~f~~~---------~rpv~l~~~~~~~~~~~~~-- 1553 (2114)
........++++||||++ +..++.+|+... ....+..... .+|......+.......+.
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 111235689999999994 344555544210 0000110000 0111111110000000000
Q ss_pred -----------------------------------HHHHh----------------------------------------
Q 000129 1554 -----------------------------------ARMQA---------------------------------------- 1558 (2114)
Q Consensus 1554 -----------------------------------~~~~~---------------------------------------- 1558 (2114)
.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000
Q ss_pred --------------------------------------------------cCHHHHHHHH----HHh--cCCCCEEEEeC
Q 000129 1559 --------------------------------------------------MTKPTFTAIV----QHA--KNEKPALVFVP 1582 (2114)
Q Consensus 1559 --------------------------------------------------~~~~~~~~i~----~~l--~~~~~~LVFv~ 1582 (2114)
...+....+. ... ..+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0001111111 221 45689999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCce
Q 000129 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIK 1661 (2114)
Q Consensus 1583 sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g~i~ 1661 (2114)
++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |.++
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 455 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEE-----------------------C------------------------------CC
T ss_pred cHHHHHHHHHHHHhCCCcceeeee-----------------------EEEccCCcccccccCHHHHHHHHHHhcccCceE
Confidence 999999999877432110000000 0124456778999999999999999999 9999
Q ss_pred EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1662 VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
|||||+++++|+|+|++.+|| +++.|.++..|+||+|| ||. ..|.|++++...+.
T Consensus 456 vLvaT~~~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEEC-----------CEEE----------EETCCSCHHHHHHC------------CCEEEEESCHHH
T ss_pred EEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCcch
Confidence 999999999999999999999 89999999999999999 994 78999999887654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=370.50 Aligned_cols=345 Identities=19% Similarity=0.216 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++||++|+++|+.|+++.|.+++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCG------QKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccC------CCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6999999999998876 5699999999999999999999998765321 24589999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
...++++..++|+.....+ ....++|+|+||+++....+... ...+.++++|||||||++.+.. + +..++.+.+
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~ 153 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH-P-YNQIMFRYL 153 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC-H-HHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc-h-HHHHHHHHH
Confidence 8889999999999865432 24578999999999844443321 1257889999999999997643 3 666655544
Q ss_pred HHHhh--ccccccEEEEccccCCh--HH----------HHHHHhccccCceEeecC-------CcccccceeEEEeecc-
Q 000129 652 RQIET--TKEHIRLVGLSATLPNY--ED----------VALFLRVNLEKGLFYFDN-------SYRPVPLSQQYIGIQV- 709 (2114)
Q Consensus 652 ~~~~~--~~~~~riv~lSATlpn~--~d----------va~~l~~~~~~~~~~f~~-------~~rpv~l~~~~~~~~~- 709 (2114)
..... .....++++||||+++. .+ +..++... .+.... .+.+.+... +..+..
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 228 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS----VIATVRDNVAELEQVVYKPQKI-SRKVASR 228 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS----EEECCCSCHHHHHTTCCCCCEE-EEECCCC
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe----eeeccccCHHHHHhhcCCCceE-EEEecCc
Confidence 32211 12568999999998542 11 22222211 111000 000111100 000000
Q ss_pred -CchhH---------------------------------------HH---------------------------------
Q 000129 710 -KKPLQ---------------------------------------RF--------------------------------- 716 (2114)
Q Consensus 710 -~~~~~---------------------------------------~~--------------------------------- 716 (2114)
..... ..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 00000 00
Q ss_pred -------------------------------------------------------------HHhhHHHHHHHHH---HhC
Q 000129 717 -------------------------------------------------------------QLMNDLCYEKVVA---VAG 732 (2114)
Q Consensus 717 -------------------------------------------------------------~~~~~~~~~~i~~---~~~ 732 (2114)
..-...+.+.+.+ ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0000001111111 123
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
.+++||||+++..+..++..|...+...... ...+...+...+||+|+..+|..+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLK-------------------------PGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCC-------------------------EEECCC------------------
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCcee-------------------------eeEEEecCCcccccccCHHHHHHH
Confidence 5899999999999999999998754211100 011223466778999999999999
Q ss_pred HHHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 813 EDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 813 ~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
++.|++ |.++|||||+++++|||+|++++||+++.++++. +|+||+|| ||. ..|.++++++..+.
T Consensus 444 ~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~----------~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 444 LEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVI----------KMIQTRGR-GRA---RDSKCFLLTSSADV 509 (555)
T ss_dssp --------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCC----------CEECSSCC-CTT---TSCEEEEEESCHHH
T ss_pred HHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHH----------HHHHhcCc-CcC---CCceEEEEEcCCCH
Confidence 999999 9999999999999999999999999966655554 59999999 885 67999999988765
Q ss_pred HH
Q 000129 892 RY 893 (2114)
Q Consensus 892 ~~ 893 (2114)
..
T Consensus 510 ~~ 511 (555)
T 3tbk_A 510 IE 511 (555)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=361.58 Aligned_cols=346 Identities=18% Similarity=0.207 Sum_probs=215.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.++++ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TTC
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCc
Confidence 6999999999999875 56999999999999999999999888743222348999999999999999999965544 488
Q ss_pred EEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHHHH-
Q 000129 1421 RVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA- 1495 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~- 1495 (2114)
++..++|+..... .....++|+|+||+++..++.. ... .+.++++||+||||++.+.. .+..++.+.....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKL 157 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhh
Confidence 9999999986542 2334679999999999887765 222 57889999999999997644 2555553332221
Q ss_pred h-hcCCCceEEEEcccCCChh------------HHHHHhcCCCCceeecCC-------CCCccCcEEEEecc--cccchH
Q 000129 1496 S-QVENKIRIVALSTSLANAK------------DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGV--DITNFE 1553 (2114)
Q Consensus 1496 ~-~~~~~~riV~lSATl~n~~------------dla~wl~~~~~~~~~f~~-------~~rpv~l~~~~~~~--~~~~~~ 1553 (2114)
. ......++++||||+++.. ++..+++... +.... .+...|........ ....+.
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASV---IATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSE---EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCee---eeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 1 1125689999999996531 2334444221 11000 00011111111000 000000
Q ss_pred H--------------------------------------HHHh-------------------------------------
Q 000129 1554 A--------------------------------------RMQA------------------------------------- 1558 (2114)
Q Consensus 1554 ~--------------------------------------~~~~------------------------------------- 1558 (2114)
. ....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000
Q ss_pred -----------------------------------------------------cCHHHHHHHH----HHh--cCCCCEEE
Q 000129 1559 -----------------------------------------------------MTKPTFTAIV----QHA--KNEKPALV 1579 (2114)
Q Consensus 1559 -----------------------------------------------------~~~~~~~~i~----~~l--~~~~~~LV 1579 (2114)
........+. ... ..++++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 0001111111 111 24589999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||+++..+..++..|............ . ..+.+...+||+|++.+|..+++.|++ |
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~-~----------------------~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPG-I----------------------LTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEE-E----------------------CCC--------------------------
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeee-E----------------------EEecCCcccccccCHHHHHHHHHHHhcCC
Confidence 999999999999888653211100000 0 123456678899999999999999999 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
.++|||||+++++|+|+|++.+|| +++.|.++.+|+||+|| ||. ..|.|++|+...+.+.
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVI----------LYEYVGNVIKMIQTRGR-GRA---RDSKCFLLTSSADVIE 511 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEE----------EESCCSSCCCEECSSCC-CTT---TSCEEEEEESCHHHHH
T ss_pred CeeEEEEcchhhcCCccccCCEEE----------EeCCCCCHHHHHHhcCc-CcC---CCceEEEEEcCCCHHH
Confidence 999999999999999999999999 88999999999999999 884 7899999998765543
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=370.08 Aligned_cols=353 Identities=19% Similarity=0.232 Sum_probs=198.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+.+|+++|.++++.++.+ .|+|++||||+|||++|++++++.+...... .+.++||++|+++|+.|+.+.+
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHHHHHHH
Confidence 48899999999999998875 5699999999999999999999988764321 2248999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
.+++...|+++..++|+.....+ ....++|+|+||+++........ ...+..+++|||||||++.+.. .+..++
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~-~~~l~~~~~vViDEaH~~~~~~--~~~~i~ 158 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-IPSLSIFTLMIFDECHNTSKQH--PYNMIM 158 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS-SCCGGGCSEEEEETGGGCSTTC--HHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc-ccccccccEEEEeCCCcccCcc--cHHHHH
Confidence 99988789999999998765432 23578999999999743333221 1257889999999999987533 355555
Q ss_pred HHHHHHH--hhccccccEEEEccccCC------hHHHHHHHhcc--ccCceEeecCC---------cccccc------ee
Q 000129 648 ARTVRQI--ETTKEHIRLVGLSATLPN------YEDVALFLRVN--LEKGLFYFDNS---------YRPVPL------SQ 702 (2114)
Q Consensus 648 ~rl~~~~--~~~~~~~riv~lSATlpn------~~dva~~l~~~--~~~~~~~f~~~---------~rpv~l------~~ 702 (2114)
.+++... .......++++||||+.+ .+.+...+... .....+..... +.|... .+
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 4443321 112467899999999752 12222221110 00000000000 000000 00
Q ss_pred --------------------EE---------------------------------EeeccC-------------------
Q 000129 703 --------------------QY---------------------------------IGIQVK------------------- 710 (2114)
Q Consensus 703 --------------------~~---------------------------------~~~~~~------------------- 710 (2114)
.+ ......
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 00 000000
Q ss_pred --------------------------------chhH-HHH---------------------HhhHHHHHHHHHHh---CC
Q 000129 711 --------------------------------KPLQ-RFQ---------------------LMNDLCYEKVVAVA---GK 733 (2114)
Q Consensus 711 --------------------------------~~~~-~~~---------------------~~~~~~~~~i~~~~---~~ 733 (2114)
.... .+. .....+.+.+.+.. .+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000 000 00011122222221 46
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHH
Q 000129 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (2114)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~ 813 (2114)
+++||||+++..+..++..|...+.... + ....+...|...+||+|+..+|..++
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~-~------------------------~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSF-L------------------------KPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCS-C------------------------CEEC----------------------
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccc-c------------------------ceeEEEccCCCccccCCCHHHHHHHH
Confidence 7999999999999999999987541100 0 00012234455669999999999999
Q ss_pred HHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 814 DLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 814 ~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
+.|++ |.++|||||+++++|||+|++++||+++.+.+ ..+|+||+|| ||. ..|.++++++..+..
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s----------~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN----------VIKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC------------CCCC-------------CCCEEEEEESCHHHH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCC----------HHHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 99998 99999999999999999999999999555444 4459999999 995 579999999886653
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=367.67 Aligned_cols=348 Identities=19% Similarity=0.245 Sum_probs=198.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+..|+|+|.++++.++++ .|+++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+..
T Consensus 245 g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~- 322 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (797)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-
T ss_pred CCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 4789999999999999875 56999999999999999999999988743222348999999999999999999965543
Q ss_pred CCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
.+++++.++|+..... .....++|+|+||+++...+++ ... .+.++++|||||||++.+.. .+..++.++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 4889999999886542 3345779999999999887764 223 57889999999999987543 35555544332
Q ss_pred H-HhhcCCCceEEEEcccCCC--hh----------HHHHHhcCCCCceeecCC--------CCCccCcEEEEec------
Q 000129 1494 I-ASQVENKIRIVALSTSLAN--AK----------DLGEWIGATSHGLFNFPP--------GVRPVPLEIHIQG------ 1546 (2114)
Q Consensus 1494 i-~~~~~~~~riV~lSATl~n--~~----------dla~wl~~~~~~~~~f~~--------~~rpv~l~~~~~~------ 1546 (2114)
. ........++++||||+.. .. .+...++... +..... ..+|......+..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~--i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcE--EecccccHHHHHHhcCCCceEEEecCCCCCcHH
Confidence 2 1122456899999999953 11 2333333211 000000 0011111111000
Q ss_pred -------------------------------ccccchHHHHHh-------------------------------------
Q 000129 1547 -------------------------------VDITNFEARMQA------------------------------------- 1558 (2114)
Q Consensus 1547 -------------------------------~~~~~~~~~~~~------------------------------------- 1558 (2114)
+....+......
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000
Q ss_pred -----------------------------------------------------cCHHHHH----HHHHHh--cCCCCEEE
Q 000129 1559 -----------------------------------------------------MTKPTFT----AIVQHA--KNEKPALV 1579 (2114)
Q Consensus 1559 -----------------------------------------------------~~~~~~~----~i~~~l--~~~~~~LV 1579 (2114)
...+... .+.... ..+.++||
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLI 636 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 0000111 111111 45688999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||+++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCE-----------------------EC----------------------------
T ss_pred EECcHHHHHHHHHHHHhCcccccccce-----------------------EEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999887542111110000 0124456778999999999999999999 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.++|||||+++++|||+|++.+|| +++.|.++..|+||+|| ||. ..|.|++|+...+.
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI----------~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSEEEEECC-------CCCSEEE----------EESCCSCHHHHHTC-----------CCCEEEEECCHHH
T ss_pred CceEEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCcH
Confidence 999999999999999999999999 88999999999999999 994 78999999977654
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-32 Score=373.81 Aligned_cols=345 Identities=19% Similarity=0.297 Sum_probs=196.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+..|+|+|.++++.++.+ .++|++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccc------CCCeEEEEeCCHHHHHHHHHHH
Confidence 47889999999999998876 5699999999999999999999998765321 2458999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
++++...++++..++|+.....+ ....++|+|+||+++....+.. ....+.++++|||||||++.+.. + +..++
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEaH~~~~~~-~-~~~i~ 393 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEETTGGGCSTTS-H-HHHHH
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc-cccccccCCEEEEECccccCCCc-c-HHHHH
Confidence 99998889999999999865432 3457899999999974433332 11267889999999999987632 2 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hH-------H---HHHHHhccccCceEeecCC---------cccccceeEEE
Q 000129 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YE-------D---VALFLRVNLEKGLFYFDNS---------YRPVPLSQQYI 705 (2114)
Q Consensus 648 ~rl~~~~-~~~~~~~riv~lSATlpn--~~-------d---va~~l~~~~~~~~~~f~~~---------~rpv~l~~~~~ 705 (2114)
.+..... ....+..++++||||++. .. . +...++.. .+..... .+|.. .+.
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~----~i~~~~~~~~~l~~~~~~~~~---~~~ 466 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI---DVR 466 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCTTHHHHHHHSCCCCC---EEE
T ss_pred HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc----EEecccccHHHHHHhcCCCce---EEE
Confidence 5554322 222556899999999742 11 1 12222210 0000000 00100 000
Q ss_pred eecc-----------------------------------------------------------Cch-------------h
Q 000129 706 GIQV-----------------------------------------------------------KKP-------------L 713 (2114)
Q Consensus 706 ~~~~-----------------------------------------------------------~~~-------------~ 713 (2114)
.+.. ... .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 000 0
Q ss_pred HH-------------------HHHh-------------------------------------------hHHHHHHHHH--
Q 000129 714 QR-------------------FQLM-------------------------------------------NDLCYEKVVA-- 729 (2114)
Q Consensus 714 ~~-------------------~~~~-------------------------------------------~~~~~~~i~~-- 729 (2114)
.. ...+ ...+.+.+.+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00 0000 0001111111
Q ss_pred -HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 730 -VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 730 -~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
...++++||||++++.+..++..|....... .+ ....+...+...+||+|+..+
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~-----~~--------------------~~~~l~G~~~~~~hg~~~~~e 681 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILN-----YI--------------------KPGVLMGRGRRDQTTGMTLPS 681 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTC-----SC--------------------CCEEC----------------
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccc-----cc--------------------cceEEEecCCcccCCCCCHHH
Confidence 1336799999999999999999887531000 00 001123455667799999999
Q ss_pred HHHHHHHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcC
Q 000129 809 RQLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2114)
Q Consensus 809 R~~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2114)
|..+++.|++ |.++|||||+++++|||+|++++||+ ||++. ++..|+||+|| ||. ..|.++++++
T Consensus 682 R~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~p~------s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 682 QKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp ------------CCSEEEEECC-------CCCSEEEE----ESCCS------CHHHHHTC-----------CCCEEEEEC
T ss_pred HHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 9999999999 99999999999999999999999999 77765 78899999999 996 6799999998
Q ss_pred CCcH
Q 000129 888 HSEL 891 (2114)
Q Consensus 888 ~~e~ 891 (2114)
..+.
T Consensus 748 ~~~~ 751 (797)
T 4a2q_A 748 KTEV 751 (797)
T ss_dssp CHHH
T ss_pred CCcH
Confidence 8654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=366.92 Aligned_cols=351 Identities=17% Similarity=0.183 Sum_probs=199.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|.++++.++.+ .|+++++|||||||++|.+++++.+.......+.++|||+||++|+.|+++.+++ +...
T Consensus 10 g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~-~~~~ 87 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK-YFER 87 (696)
T ss_dssp C--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH-HTTT
T ss_pred CCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH-Hhcc
Confidence 6889999999999999874 5699999999999999999999988763322223899999999999999999995 4444
Q ss_pred CCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
.++++..++|+.... ......++|+|+||+++...+.+ ... .+.++++||+||||++.+.. .+..++.++..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLD 163 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc--cHHHHHHHHHH
Confidence 588999999987543 22335679999999999887765 222 57889999999999997543 45444433322
Q ss_pred H--HhhcCCCceEEEEcccCCC---------hhHHHHHhcCCCCceeecCCCC-------CccCcEEEEe--cccc----
Q 000129 1494 I--ASQVENKIRIVALSTSLAN---------AKDLGEWIGATSHGLFNFPPGV-------RPVPLEIHIQ--GVDI---- 1549 (2114)
Q Consensus 1494 i--~~~~~~~~riV~lSATl~n---------~~dla~wl~~~~~~~~~f~~~~-------rpv~l~~~~~--~~~~---- 1549 (2114)
. ........++|+||||+.+ ...+...+.......+...... ...|...... ....
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1 1122467899999999973 1122222211111111000000 0000000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 000129 1550 -------------------------------------------------------------------------------- 1549 (2114)
Q Consensus 1550 -------------------------------------------------------------------------------- 1549 (2114)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ---------------------------cchHHHHHh-----------------cCHHHHHHH---HHHh---cCCCCEEE
Q 000129 1550 ---------------------------TNFEARMQA-----------------MTKPTFTAI---VQHA---KNEKPALV 1579 (2114)
Q Consensus 1550 ---------------------------~~~~~~~~~-----------------~~~~~~~~i---~~~l---~~~~~~LV 1579 (2114)
......+.. ........+ +... .+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000000 011111111 1111 25678999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||+++..|..++..|........-... ...+.|...+||+|+..+|..+++.|++ |
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g 460 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPG-----------------------ILTGRGKTNQNTGMTLPAQKCILDAFKASG 460 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEE-----------------------C-----------------------------
T ss_pred EeCcHHHHHHHHHHHHhCCCcccccee-----------------------EEEccCCCccccCCCHHHHHHHHHHHHhcC
Confidence 999999999999888653210000000 0112344455889999999999999998 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
.++|||||+++++|||+|++.+|| +++.|.+..+|+||+|| ||. ..|.|++++...+..
T Consensus 461 ~~~vLVaT~v~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 461 DHNILIATSVADEGIDIAQCNLVI----------LYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp CCSCSEEEESSCCC---CCCSEEE----------EESCC--CCCC-------------CCCEEEEEESCHHHH
T ss_pred CccEEEEechhhcCCcCccCCEEE----------EeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 999999999999999999999999 88899999999999999 994 689999999876553
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=366.71 Aligned_cols=315 Identities=21% Similarity=0.295 Sum_probs=217.5
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.+| +||++|.++++.++.+ ..|+|++||||||||++|+++++..+..+ .+++|++||++||.|
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQ 432 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHH
Confidence 467 8999999999998764 24799999999999999999999988653 379999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
+++.+.+++..+|++|..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++..
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~---~----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ---E----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH---H----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---h----hhhccCCceEEecccchhhHH
Confidence 99999999998899999999998755431 135899999999652 2 145778999999999997532
Q ss_pred -CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCC-cccccceeEEEeeccCchhHHH
Q 000129 639 -RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 639 -rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
+.. +.......++++||||.+ ...++..+..... ....+.. ....++...+ .....
T Consensus 506 qr~~------------l~~~~~~~~vL~mSATp~-p~tl~~~~~g~~~--~s~i~~~p~~r~~i~~~~--~~~~~----- 563 (780)
T 1gm5_A 506 QREA------------LMNKGKMVDTLVMSATPI-PRSMALAFYGDLD--VTVIDEMPPGRKEVQTML--VPMDR----- 563 (780)
T ss_dssp --CC------------CCSSSSCCCEEEEESSCC-CHHHHHHHTCCSS--CEEECCCCSSCCCCEECC--CCSST-----
T ss_pred HHHH------------HHHhCCCCCEEEEeCCCC-HHHHHHHHhCCcc--eeeeeccCCCCcceEEEE--eccch-----
Confidence 211 112345789999999953 3455444322211 1111110 0011222111 11111
Q ss_pred HHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhh-hc-
Q 000129 717 QLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-LL- 793 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~-ll- 793 (2114)
...+++.+.+.. .+++++|||++..+.+.+... ..+.+. ..|.. .+
T Consensus 564 ---~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~--------------------~a~~l~--------~~L~~~~~~ 612 (780)
T 1gm5_A 564 ---VNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK--------------------SAVEMY--------EYLSKEVFP 612 (780)
T ss_dssp ---HHHHHHHHHHHTTTSCCBCCBCCCC--------C--------------------HHHHHH--------HSGGGSCC-
T ss_pred ---HHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH--------------------HHHHHH--------HHHHhhhcC
Confidence 112233344333 467999999988765322000 000000 01111 11
Q ss_pred cCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCC
Q 000129 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2114)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2114)
..+++.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. .+...|.||+|||||
T Consensus 613 ~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r-----~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 613 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGR 683 (780)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC-----CCHHHHHHHhcccCc
Confidence 356889999999999999999999999999999999999999999999997 66653 256789999999999
Q ss_pred CCCCCceEEEEEcCC
Q 000129 874 PQYDSYGEGIIITGH 888 (2114)
Q Consensus 874 ~g~d~~G~~iil~~~ 888 (2114)
.| ..|.|++++++
T Consensus 684 ~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 684 GG--QEAYCFLVVGD 696 (780)
T ss_dssp SS--TTCEEECCCCS
T ss_pred CC--CCCEEEEEECC
Confidence 87 67999999874
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=367.13 Aligned_cols=339 Identities=19% Similarity=0.269 Sum_probs=213.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH-HHHHHHh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV-VGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~-~~~~~~~ 573 (2114)
+|+|+|.++++.++.+ .++|++||||+|||++|++++++.+...... ..+.++|||+|+++|+.|+ ++.|+++
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 7999999999999886 4699999999999999999999988765210 0124799999999999999 9999998
Q ss_pred hccCCcEEEEEeCCCccCh---hhhccceEEEcCHhHHHHHH-hcc---CCCcccccccEEEEeccccccc--CCchhHH
Q 000129 574 LQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIIT-RKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE 644 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~d~l~-r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~le 644 (2114)
+.. ++++..++|+..... .....++|+|+||+++.... +.. .....+..+++|||||||++.. .....+.
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 764 589999999876553 23467999999999974333 211 1234678899999999999854 2333333
Q ss_pred HHHHHHHHHHh------hccccccEEEEccccCCh---------HHHH---HHHhccccCceEeecCC------cccccc
Q 000129 645 SIVARTVRQIE------TTKEHIRLVGLSATLPNY---------EDVA---LFLRVNLEKGLFYFDNS------YRPVPL 700 (2114)
Q Consensus 645 ~iv~rl~~~~~------~~~~~~riv~lSATlpn~---------~dva---~~l~~~~~~~~~~f~~~------~rpv~l 700 (2114)
.++....+... ...+.+++|+||||+++. +++. .++... .+...... +.+.|.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~---~i~~~~~~~~~l~~~~~~p~ 236 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF---TIKTVKENLDQLKNQIQEPC 236 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS---CCCCCCTTHHHHHHHSCCCE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC---EEEeecCchHHHhhhcCCCc
Confidence 22222111110 011567999999998751 2222 233220 00000000 000011
Q ss_pred eeEEEeeccCc--hh-HH--------------------------------------------------------------
Q 000129 701 SQQYIGIQVKK--PL-QR-------------------------------------------------------------- 715 (2114)
Q Consensus 701 ~~~~~~~~~~~--~~-~~-------------------------------------------------------------- 715 (2114)
. .+..+.... .. ..
T Consensus 237 ~-~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 237 K-KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp E-EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred e-EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 011000000 00 00
Q ss_pred ------------------------------------------HHHh---------------------hHHHHHHHHHH--
Q 000129 716 ------------------------------------------FQLM---------------------NDLCYEKVVAV-- 730 (2114)
Q Consensus 716 ------------------------------------------~~~~---------------------~~~~~~~i~~~-- 730 (2114)
+... ...+.+.+.+.
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0000 00001111111
Q ss_pred -hC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCC-----
Q 000129 731 -AG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG----- 803 (2114)
Q Consensus 731 -~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHag----- 803 (2114)
.+ ++++||||++++.++.++..|.... .+ . .....+..+||+
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~----~l---~------------------------~~g~~~~~lhg~~~~~~ 444 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENE----KF---A------------------------EVGVKAHHLIGAGHSSE 444 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSC----SC---C-----------------------------CEECCCSCCCTT
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCc----cc---c------------------------ccCcceEEEECCCCccC
Confidence 12 6799999999999999999987530 00 0 011335677888
Q ss_pred ---CCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCce
Q 000129 804 ---MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2114)
Q Consensus 804 ---l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2114)
|+..+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |+.+|+||+|||||.| +
T Consensus 445 ~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p~------s~~~~~Qr~GRArr~g----~ 510 (699)
T 4gl2_A 445 FKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLVT------NEIAMVQARGRARADE----S 510 (699)
T ss_dssp CCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCCC------CHHHHHHHHTTSCSSS----C
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCCC------CHHHHHHHcCCCCCCC----c
Confidence 99999999999999999999999999999999999999998 77765 7889999999998854 4
Q ss_pred EEEEEcCCC
Q 000129 881 EGIIITGHS 889 (2114)
Q Consensus 881 ~~iil~~~~ 889 (2114)
.+++++...
T Consensus 511 ~~~l~~~~~ 519 (699)
T 4gl2_A 511 TYVLVAHSG 519 (699)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEeCC
Confidence 455554443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=360.71 Aligned_cols=320 Identities=19% Similarity=0.293 Sum_probs=223.2
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~-----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
+| .||++|.++++.++++ ..|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 366 pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~--qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 366 PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHH
Confidence 47 8999999999998763 2479999999999999999999998865 34 899999999999999999997
Q ss_pred HhcCCCCcEEEEEcCCcccchh-----hcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHH
Q 000129 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2114)
Q Consensus 1413 ~f~~~~g~~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le 1485 (2114)
.+.. .|++++.++|+.+...+ .+. ..+|+|+||+.+.. ...+.++++||+||+|+++...
T Consensus 440 ~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~q----- 506 (780)
T 1gm5_A 440 SFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQ----- 506 (780)
T ss_dssp HHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC---------
T ss_pred Hhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHH-----
Confidence 6654 48999999998875422 222 36999999987532 3457899999999999975321
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcccCCChhHHH-HHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHH
Q 000129 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLG-EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~~~riV~lSATl~n~~dla-~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 1564 (2114)
+ ..........++++||||+.. +.++ .+++.....+....+..+. ++...+... .. ....+
T Consensus 507 ----r--~~l~~~~~~~~vL~mSATp~p-~tl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~---~~-------~~~l~ 568 (780)
T 1gm5_A 507 ----R--EALMNKGKMVDTLVMSATPIP-RSMALAFYGDLDVTVIDEMPPGRK-EVQTMLVPM---DR-------VNEVY 568 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCC-HHHHHHHTCCSSCEEECCCCSSCC-CCEECCCCS---ST-------HHHHH
T ss_pred ----H--HHHHHhCCCCCEEEEeCCCCH-HHHHHHHhCCcceeeeeccCCCCc-ceEEEEecc---ch-------HHHHH
Confidence 1 111122356899999999754 3333 3344333223322222221 232222111 11 12234
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHH----HHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeec
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLT----AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~l----a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H 1640 (2114)
..+...+..+++++|||++...+..+ +..+.. .+... ...+.+|+.+|
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~-------------------------~L~~~---~~~~~~v~~lH 620 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYE-------------------------YLSKE---VFPEFKLGLMH 620 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHH-------------------------SGGGS---CC---CBCCCC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHH-------------------------HHHhh---hcCCCcEEEEe
Confidence 55556667789999999987654321 111111 11000 00135799999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCce
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
|+|++.+|..+++.|++|+++|||||+++++|+|+|++++|| +++.| ++.+.|.||+|||||. +..|
T Consensus 621 G~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI----------i~d~~r~~l~~l~Qr~GRaGR~--g~~g 688 (780)
T 1gm5_A 621 GRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----------IENPERFGLAQLHQLRGRVGRG--GQEA 688 (780)
T ss_dssp SSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----------BCSCSSSCTTHHHHHHHTSCCS--STTC
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE----------EeCCCCCCHHHHHHHhcccCcC--CCCC
Confidence 999999999999999999999999999999999999999999 66666 4788999999999998 6789
Q ss_pred EEEEEeecCcHHHHH
Q 000129 1720 KCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1720 ~~iil~~~~~~~~~~ 1734 (2114)
.|++++.+......+
T Consensus 689 ~~ill~~~~~~~~~~ 703 (780)
T 1gm5_A 689 YCFLVVGDVGEEAME 703 (780)
T ss_dssp EEECCCCSCCHHHHH
T ss_pred EEEEEECCCChHHHH
Confidence 999999844444333
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=374.74 Aligned_cols=323 Identities=14% Similarity=0.134 Sum_probs=221.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||. | |+|.++++.++.+ +|++++||||||||+ |.+|++..+.. .++ ++|||+||++||.|+++.+++ +...
T Consensus 55 g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~--~~lil~PtreLa~Q~~~~l~~-l~~~ 125 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLAL--KGK--RCYVIFPTSLLVIQAAETIRK-YAEK 125 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHT--TSC--CEEEEESCHHHHHHHHHHHHH-HHTT
T ss_pred CCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCC--eEEEEeccHHHHHHHHHHHHH-HHhh
Confidence 688 9 9999999999975 569999999999998 88888877765 233 899999999999999999995 5444
Q ss_pred CCc----EEEEEcCCcccch-----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1418 LGM----RVVELTGETAMDL-----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1418 ~g~----~v~~l~G~~~~~~-----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
.++ +++.++|+.+... +.+.+++|+|+||+++..++++ ++++++||+||||++.+ .|..++.++
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~i~ 198 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDKLL 198 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHHHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHHHH
Confidence 577 8999999887643 3344589999999998876554 66899999999999887 567777777
Q ss_pred HHHHHHH----hhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCC-CCccCcEEEEecccccchHHHHHhcCHHH
Q 000129 1489 SRMRYIA----SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2114)
Q Consensus 1489 srl~~i~----~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 1563 (2114)
.++.... ...+...|++++|||+++..+++.++...... +...+. .....+...+.... . . ..
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~~~--k--------~-~~ 266 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVNDE--S--------I-ST 266 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEESCC--C--------T-TT
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEechh--H--------H-HH
Confidence 7654211 12235678999999998764333322111100 111111 11111222222100 0 0 11
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
...+... .++++||||+|++.|+.++..|.. . ..+..+||+|
T Consensus 267 L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~----------------------------------~--~~v~~lhg~~ 308 (1054)
T 1gku_B 267 LSSILEK--LGTGGIIYARTGEEAEEIYESLKN----------------------------------K--FRIGIVTATK 308 (1054)
T ss_dssp THHHHTT--SCSCEEEEESSHHHHHHHHHTTTT----------------------------------S--SCEEECTTSS
T ss_pred HHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhh----------------------------------c--cCeeEEeccH
Confidence 1122222 267899999999999888855421 0 3589999998
Q ss_pred CHHHHHHHHHHHhcCCceEEEe----cCccccccCCCCc-EEEEEeeeEecCCcCcCCC---------------------
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTAH-LVVVMGTQYYDGQENAHTD--------------------- 1697 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~~-~vVI~gt~~yd~~~~~~~~--------------------- 1697 (2114)
..+++.|++|+++|||| |+++++|||+|++ .+|| +++.|
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI----------~~~~P~~~~~~~~~~~~~~~~~~~~~ 373 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV----------FVGCPSFRVTIEDIDSLSPQMVKLLA 373 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE----------EESCCEEEEECSCGGGSCHHHHHHHH
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE----------EeCCCcccccccccccChHHHHHHHH
Confidence 37889999999999999 9999999999995 8887 44444
Q ss_pred --------------------------------------------------CCHhHHHHhHcccCCCCCCCceEEEEEeec
Q 000129 1698 --------------------------------------------------YPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1698 --------------------------------------------------~s~~~~lQr~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
.+..+|+||+|||||.|.+..+.++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~ 453 (1054)
T 1gku_B 374 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE 453 (1054)
T ss_dssp TTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe
Confidence 489999999999999753433235555555
Q ss_pred CcHHHHHHHHHhcc
Q 000129 1728 PRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1728 ~~~~~~~~~lRl~~ 1741 (2114)
.+...++.+.+.++
T Consensus 454 ~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 454 DDSELLSAFIERAK 467 (1054)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 56666666654333
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=360.38 Aligned_cols=348 Identities=20% Similarity=0.257 Sum_probs=198.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++..|+|+|.++++.++++ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|++..|++.+..
T Consensus 245 ~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~- 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (936)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 4778999999999999885 56999999999999999999998887632211338999999999999999999965543
Q ss_pred CCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccc-cccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
.++++..++|+..... .....++|+|+||+++...+++ ... .+.++++||+||||++.+.. + +..++.++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~-~-~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC-H-HHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc-c-HHHHHHHHHH
Confidence 4889999999886542 2345679999999999887764 222 57889999999999987543 2 5555544332
Q ss_pred H-HhhcCCCceEEEEcccCCC--hh----------HHHHHhcCCCCceeecCC--------CCCccCcEEEEec------
Q 000129 1494 I-ASQVENKIRIVALSTSLAN--AK----------DLGEWIGATSHGLFNFPP--------GVRPVPLEIHIQG------ 1546 (2114)
Q Consensus 1494 i-~~~~~~~~riV~lSATl~n--~~----------dla~wl~~~~~~~~~f~~--------~~rpv~l~~~~~~------ 1546 (2114)
. ........++++||||+.. .. .+...++... +..... ..+|......+..
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~--i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCce--eecccccHHHHHHhccCCcceEEecccccCcHH
Confidence 2 1222456899999999953 21 2223333211 000000 0011100000000
Q ss_pred -------------------------------ccccchHHHHH--------------------------------------
Q 000129 1547 -------------------------------VDITNFEARMQ-------------------------------------- 1557 (2114)
Q Consensus 1547 -------------------------------~~~~~~~~~~~-------------------------------------- 1557 (2114)
+....+.....
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000
Q ss_pred ----------------h------------------------------------cCHHHHHHHHHHh------cCCCCEEE
Q 000129 1558 ----------------A------------------------------------MTKPTFTAIVQHA------KNEKPALV 1579 (2114)
Q Consensus 1558 ----------------~------------------------------------~~~~~~~~i~~~l------~~~~~~LV 1579 (2114)
. ...+....+...+ ..+.++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 0 0011111111111 34678999
Q ss_pred EeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-C
Q 000129 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2114)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~-g 1658 (2114)
||++++.+..++..|.......+.... . ..+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~-~----------------------l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPG-V----------------------LMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCE-E----------------------C----------------------------
T ss_pred EeCCHHHHHHHHHHHhhCcccccccee-E----------------------EecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999888653111110000 0 123456778999999999999999999 9
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.++|||||+++++|||+|++.+|| +++.|.+...|+||+|| ||. ..|.|++++.....
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI----------~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEE----------EESCCSCSHHHHCC-----------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEeCCCH
Confidence 999999999999999999999999 88999999999999999 994 78999999877554
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=334.36 Aligned_cols=327 Identities=20% Similarity=0.248 Sum_probs=229.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.+++..++++ ++++++|||+|||+++.++++..+.. ..+ ++|||+|+++|+.|+++++++.++ ..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~--~~liv~P~~~L~~q~~~~~~~~~~-~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLFN-LPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHBC-SCGG
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC--eEEEEECCHHHHHHHHHHHHHHhC-cchh
Confidence 6999999999999986 79999999999999999999887763 344 899999999999999999995543 2245
Q ss_pred EEEEEcCCcccch--hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1421 RVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
++..++|+..... .....++|+|+||+.+...+.+ ....+.++++||+||||++.+.. .+..+...+.. .
T Consensus 82 ~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~~~----~ 153 (494)
T 1wp9_A 82 KIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNY--AYVFIAREYKR----Q 153 (494)
T ss_dssp GEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTC--HHHHHHHHHHH----H
T ss_pred heEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCC--cHHHHHHHHHh----c
Confidence 8899999876542 2345679999999999877664 23457889999999999987542 33334433332 2
Q ss_pred CCCceEEEEcccCCC-hh---HHHHHhcCCCCceee-cCC----CCCccCcEEEEecccccc--h---------------
Q 000129 1499 ENKIRIVALSTSLAN-AK---DLGEWIGATSHGLFN-FPP----GVRPVPLEIHIQGVDITN--F--------------- 1552 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n-~~---dla~wl~~~~~~~~~-f~~----~~rpv~l~~~~~~~~~~~--~--------------- 1552 (2114)
....++++||||+.+ .. ++..+++........ ..+ ...+..........+... .
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999985 23 344444432211100 000 001111111100000000 0
Q ss_pred ----------------------------------------------------------------HHHHHh----------
Q 000129 1553 ----------------------------------------------------------------EARMQA---------- 1558 (2114)
Q Consensus 1553 ----------------------------------------------------------------~~~~~~---------- 1558 (2114)
......
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence 000000
Q ss_pred --------------------------cCHHH----HHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1559 --------------------------MTKPT----FTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1559 --------------------------~~~~~----~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
...+. ...+.... ..+.++||||+++..+..++..|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------- 383 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK---------- 383 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH----------
Confidence 00011 11111221 3578999999999999888876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecC--------CCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE--------GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~--------~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~ 1678 (2114)
.+..+..+|| +|+..+|..+++.|++|.++|||||+++++|+|+|++
T Consensus 384 -------------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 384 -------------------------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp -------------------------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC
T ss_pred -------------------------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC
Confidence 1345788888 9999999999999999999999999999999999999
Q ss_pred EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH
Q 000129 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2114)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~ 1730 (2114)
.+|| +++.|.++..|+||+|||||.| .|.+++++.....
T Consensus 439 ~~Vi----------~~d~~~~~~~~~Qr~GR~~R~g---~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 439 DLVV----------FYEPVPSAIRSIQRRGRTGRHM---PGRVIILMAKGTR 477 (494)
T ss_dssp CEEE----------ESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEETTSH
T ss_pred CEEE----------EeCCCCCHHHHHHHHhhccCCC---CceEEEEEecCCH
Confidence 9999 7888899999999999999974 3999999987754
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=337.91 Aligned_cols=327 Identities=21% Similarity=0.311 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+... +.++||++|+++|+.|+.+++.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999887 799999999999999999999887621 2379999999999999999999987
Q ss_pred ccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+..+.++..++|+...... ....++|+|+||+++....... ...+.++++||+||||++.+.. ....+...+
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~-- 150 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGNY--AYVFIAREY-- 150 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTTC--HHHHHHHHH--
T ss_pred CcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC--CcchhhceEEEEECCcccCCCC--cHHHHHHHH--
Confidence 5445589999998765432 2357899999999974333322 2356789999999999987531 223333322
Q ss_pred HHhhccccccEEEEccccCC-hHHHHHHHhccccCceEeecCC---cccc--cceeEEEeeccCchhHHH----------
Q 000129 653 QIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNS---YRPV--PLSQQYIGIQVKKPLQRF---------- 716 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn-~~dva~~l~~~~~~~~~~f~~~---~rpv--~l~~~~~~~~~~~~~~~~---------- 716 (2114)
.......++++||||+++ .+++..++..-........... ..+. +....+...........+
T Consensus 151 --~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (494)
T 1wp9_A 151 --KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRD 228 (494)
T ss_dssp --HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred --HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHH
Confidence 223567899999999764 3444444432111111111000 0000 000001000000000000
Q ss_pred ----------------------------------------------------------------------HH--------
Q 000129 717 ----------------------------------------------------------------------QL-------- 718 (2114)
Q Consensus 717 ----------------------------------------------------------------------~~-------- 718 (2114)
..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (494)
T 1wp9_A 229 ALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEA 308 (494)
T ss_dssp HHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhh
Confidence 00
Q ss_pred -----------------------------------hhHHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhcc
Q 000129 719 -----------------------------------MNDLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (2114)
Q Consensus 719 -----------------------------------~~~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (2114)
-...+.+.+.+. ..++++||||+++..+..++..|...+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-- 386 (494)
T 1wp9_A 309 KAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-- 386 (494)
T ss_dssp HTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC--
T ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC--
Confidence 001112222222 3578999999999999999999886532
Q ss_pred cccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecC--------CCCHHHHHHHHHHHhCCCceEEEechHhhh
Q 000129 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA--------GMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2114)
Q Consensus 761 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHa--------gl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2114)
.+..+|| +|+..+|..+++.|++|.++|||||+++++
T Consensus 387 -----------------------------------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~ 431 (494)
T 1wp9_A 387 -----------------------------------KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEE 431 (494)
T ss_dssp -----------------------------------CEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGG
T ss_pred -----------------------------------CcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcccc
Confidence 2455566 999999999999999999999999999999
Q ss_pred hcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
|+|+|++++||+ |+++. ++..|+||+|||||.| . |.++++++....
T Consensus 432 Gldl~~~~~Vi~----~d~~~------~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 432 GLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM--P-GRVIILMAKGTR 477 (494)
T ss_dssp GGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC--C-SEEEEEEETTSH
T ss_pred CCCchhCCEEEE----eCCCC------CHHHHHHHHhhccCCC--C-ceEEEEEecCCH
Confidence 999999999998 55543 6778999999999987 3 999998887654
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=362.74 Aligned_cols=347 Identities=19% Similarity=0.292 Sum_probs=196.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+.+|+|+|.++++.++.+ .+++++||||||||++|++++++.+..... ..+.++|||+|+++|+.|+++.|
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 46789999999999999876 569999999999999999999988765421 12457999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccCh---hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (2114)
++++...++++..++|+..... .....++|+|+||+++....+... ...+..+++|||||||++.... + +..++
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~-~~~l~~~~liViDEaH~~~~~~-~-~~~i~ 393 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS-CCCGGGCSEEEEETGGGCSTTC-H-HHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc-cccccCCCEEEEECccccCCCc-c-HHHHH
Confidence 9999888999999999985443 234578999999999844433321 1257889999999999987532 3 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hHH----------HHHHHhccccCceEeecCC-------cccccceeEEEee
Q 000129 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YED----------VALFLRVNLEKGLFYFDNS-------YRPVPLSQQYIGI 707 (2114)
Q Consensus 648 ~rl~~~~-~~~~~~~riv~lSATlpn--~~d----------va~~l~~~~~~~~~~f~~~-------~rpv~l~~~~~~~ 707 (2114)
.+..... ....+..++++||||++. ..+ +...+... .+..... +.+.+.. .+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~----~i~~~~~~~~~l~~~~~~p~~-~~~~~ 468 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI-DVRLV 468 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHSCCCCE-EEEEC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc----eeecccccHHHHHHhccCCcc-eEEec
Confidence 5554322 222456899999999742 111 11222210 0000000 0000000 00000
Q ss_pred cc-----------------------------------------------------------Cch-------------hHH
Q 000129 708 QV-----------------------------------------------------------KKP-------------LQR 715 (2114)
Q Consensus 708 ~~-----------------------------------------------------------~~~-------------~~~ 715 (2114)
.. ... ...
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00 000 000
Q ss_pred -------------------HHHhh-------------------------------------------HHHHHHHHHH---
Q 000129 716 -------------------FQLMN-------------------------------------------DLCYEKVVAV--- 730 (2114)
Q Consensus 716 -------------------~~~~~-------------------------------------------~~~~~~i~~~--- 730 (2114)
...+. ..+.+.+.+.
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~ 628 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcc
Confidence 00000 0011112221
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
..++++||||++++.+..++..|.....-.. + ....+...+...+||+|+..+|.
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-i------------------------k~~~l~G~~~~~~hg~m~~~eR~ 683 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNY-I------------------------KPGVLMGRGRRDQTTGMTLPSQK 683 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSS-C------------------------CCEEC------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccc-c------------------------ceeEEecCCCcccCCCCCHHHHH
Confidence 2357999999999999999999986410000 0 00112234566779999999999
Q ss_pred HHHHHHhC-CCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 811 LVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 811 ~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
.+++.|++ |.++|||||+++++|||+|++++||+ ||++. |+..|+||+|| ||. ..|.++++++..
T Consensus 684 ~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~p~------s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp ----------CCSEEEEECC------CCCCSEEEE----ESCCS------CSHHHHCC-----------CCCEEEEESCH
T ss_pred HHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 99999999 99999999999999999999999999 66654 67789999999 996 579999998876
Q ss_pred cH
Q 000129 890 EL 891 (2114)
Q Consensus 890 e~ 891 (2114)
+.
T Consensus 750 t~ 751 (936)
T 4a2w_A 750 EV 751 (936)
T ss_dssp HH
T ss_pred CH
Confidence 54
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=359.28 Aligned_cols=310 Identities=18% Similarity=0.248 Sum_probs=226.2
Q ss_pred CCCCCCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (2114)
.+| ++||+|.++++.++.. +. ++|+|||||+|||.+|+++++..+.. +.+++|++||++||.|
T Consensus 600 f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~~vlvlvPt~~La~Q 667 (1151)
T 2eyq_A 600 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HKQVAVLVPTTLLAQQ 667 (1151)
T ss_dssp CCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TCEEEEECSSHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCeEEEEechHHHHHH
Confidence 355 4799999999998862 33 79999999999999999998887643 2389999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccC
Q 000129 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
++++|.+++..+++++..++|..+..... ...++|+|+||+.+ .. ...++++++|||||+|++
T Consensus 668 ~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll---~~----~~~~~~l~lvIiDEaH~~--- 737 (1151)
T 2eyq_A 668 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL---QS----DVKFKDLGLLIVDEEHRF--- 737 (1151)
T ss_dssp HHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH---HS----CCCCSSEEEEEEESGGGS---
T ss_pred HHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH---hC----CccccccceEEEechHhc---
Confidence 99999999988899999999876544321 13589999999853 22 135678999999999995
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
|.....++.. ...+.++++||||++. ..+...+.... .............++...+... ...
T Consensus 738 -g~~~~~~l~~-------l~~~~~vl~lSATp~p-~~l~~~~~~~~-~~~~i~~~~~~r~~i~~~~~~~---~~~----- 799 (1151)
T 2eyq_A 738 -GVRHKERIKA-------MRANVDILTLTATPIP-RTLNMAMSGMR-DLSIIATPPARRLAVKTFVREY---DSM----- 799 (1151)
T ss_dssp -CHHHHHHHHH-------HHTTSEEEEEESSCCC-HHHHHHHTTTS-EEEECCCCCCBCBCEEEEEEEC---CHH-----
T ss_pred -ChHHHHHHHH-------hcCCCCEEEEcCCCCh-hhHHHHHhcCC-CceEEecCCCCccccEEEEecC---CHH-----
Confidence 3333333322 3457899999999543 34444333211 1111111111112222222211 111
Q ss_pred hhHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCce
Q 000129 719 MNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2114)
Q Consensus 719 ~~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (2114)
.+...+ .+...+++++|||++++.+..++..|..... ..++
T Consensus 800 ---~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p-----------------------------------~~~v 841 (1151)
T 2eyq_A 800 ---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARI 841 (1151)
T ss_dssp ---HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCE
T ss_pred ---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCeE
Confidence 111122 2334578999999999999999998876421 1358
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
+++||+|+..+|..+++.|++|+++|||||+++++|||+|++++||. +++.. ++..+|.||+||+||.|
T Consensus 842 ~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~~-----~~l~~l~Qr~GRvgR~g-- 910 (1151)
T 2eyq_A 842 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH-- 910 (1151)
T ss_dssp EECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE----eCCCC-----CCHHHHHHHHhccCcCC--
Confidence 89999999999999999999999999999999999999999999886 55432 37889999999999987
Q ss_pred CceEEEEEcCCC
Q 000129 878 SYGEGIIITGHS 889 (2114)
Q Consensus 878 ~~G~~iil~~~~ 889 (2114)
..|.|++++..+
T Consensus 911 ~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 911 HQAYAWLLTPHP 922 (1151)
T ss_dssp BCEEEEEEECCG
T ss_pred CceEEEEEECCc
Confidence 679999998764
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=366.59 Aligned_cols=278 Identities=17% Similarity=0.156 Sum_probs=193.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|| +|+|+|.++++.++.+ .+++++||||||||++|+++++..+.. +.++||++||++||.|+++.+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g-~dvlv~ApTGSGKTl~~l~~il~~~~~-----------~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTT-CCEEECCSTTCCHHHHHHHHHHHHHTT-----------TCCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcC-CCEEEEeCCCCcHHHHHHHHHHHHHhc-----------CCeEEEEechHHHHHHHHHHH
Confidence 367 6999999999998876 469999999999999988888887632 347999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh-----h-h-ccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccC----
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-----Q-I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDN---- 638 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-----~-~-~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~---- 638 (2114)
.++. ..++++..++|+.+...+ . . ..++|+|+||+++ +.+.+ ..++++++|||||||++.+.
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccc
Confidence 9955 778999999999876332 1 1 2489999999997 44432 34568999999999987641
Q ss_pred --------Cchh-HHHHHHHHH--HHHhhcc--ccccEEEEcccc-CCh---HHHHHHHhccccCceEeecCCcccccce
Q 000129 639 --------RGPV-LESIVARTV--RQIETTK--EHIRLVGLSATL-PNY---EDVALFLRVNLEKGLFYFDNSYRPVPLS 701 (2114)
Q Consensus 639 --------rg~~-le~iv~rl~--~~~~~~~--~~~riv~lSATl-pn~---~dva~~l~~~~~~~~~~f~~~~rpv~l~ 701 (2114)
+.+. +..++..+. +...... ...|++++|||+ |.. .....++.... ......+..+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------~~~~~~~~~i~ 289 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------GRLVSVARNIT 289 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------CBCCCCCCCEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------ccCCCCcCCce
Confidence 2222 333333221 0000111 678999999994 432 11222322111 11122233344
Q ss_pred eEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh
Q 000129 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781 (2114)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~ 781 (2114)
+.++.. .+ ... +...+.. . ++++||||++++.+..++..|...+.
T Consensus 290 ~~~~~~--~k----~~~----L~~ll~~-~-~~~~LVF~~s~~~a~~l~~~L~~~g~----------------------- 334 (1104)
T 4ddu_A 290 HVRISS--RS----KEK----LVELLEI-F-RDGILIFAQTEEEGKELYEYLKRFKF----------------------- 334 (1104)
T ss_dssp EEEESC--CC----HHH----HHHHHHH-H-CSSEEEEESSSHHHHHHHHHHHHTTC-----------------------
T ss_pred eEEEec--CH----HHH----HHHHHHh-c-CCCEEEEECcHHHHHHHHHHHHhCCC-----------------------
Confidence 444332 11 111 1222222 2 58999999999999999999986542
Q ss_pred cccCcchhhhhccCceE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCc-eEEEEeccee
Q 000129 782 DMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGTQI 848 (2114)
Q Consensus 782 ~~~~~~~L~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~~~ 848 (2114)
.+. .+|| +|+. ++.|++|.++|||| |+++++|||+|+ +++||+++.|
T Consensus 335 --------------~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 335 --------------NVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp --------------CEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred --------------CeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 234 5587 3555 99999999999999 999999999999 9999994444
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=359.35 Aligned_cols=339 Identities=17% Similarity=0.201 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-CCceEEEEEcccHHHHHHH-HHHHHHHhcCCC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKER-YRDWEIKFGQGL 1418 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-~~~~k~l~I~Ptr~La~q~-~~~~~~~f~~~~ 1418 (2114)
.|+|+|.++++.++++ .++++++|||||||++|.+|+++.+..... +.+.++|||+|+++|+.|+ ++.+++.+..
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 6999999999999985 559999999999999999999998876321 1112899999999999999 9999965543
Q ss_pred CcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhh----cccccccceeEEEecccccccCCCCchHHHHHHHH
Q 000129 1419 GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl 1491 (2114)
+++++.++|+.... .......+|+|+||+++...+.+. .....+.++++|||||||++.. ++.+..++.++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~--~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT--TBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc--cchHHHHHHHH
Confidence 47899999987654 223467799999999998766321 1234678899999999998853 22222233322
Q ss_pred HHH-HhhcC---------CCceEEEEcccCCCh------------hHHHHHhcCCCCceeecCCC--------CCccCcE
Q 000129 1492 RYI-ASQVE---------NKIRIVALSTSLANA------------KDLGEWIGATSHGLFNFPPG--------VRPVPLE 1541 (2114)
Q Consensus 1492 ~~i-~~~~~---------~~~riV~lSATl~n~------------~dla~wl~~~~~~~~~f~~~--------~rpv~l~ 1541 (2114)
... ..... +..++|+||||+.+. .++..+++... +...... .+|....
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~--i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFT--IKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSC--CCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCE--EEeecCchHHHhhhcCCCceEE
Confidence 111 11111 567999999999872 23344444411 0000000 0111100
Q ss_pred EEEecccccc----------------------------hHHHH-------------------------------------
Q 000129 1542 IHIQGVDITN----------------------------FEARM------------------------------------- 1556 (2114)
Q Consensus 1542 ~~~~~~~~~~----------------------------~~~~~------------------------------------- 1556 (2114)
..+....... +....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 00000
Q ss_pred ------------------------------------------------------------HhcCHHHHHHHHHHhc--C-
Q 000129 1557 ------------------------------------------------------------QAMTKPTFTAIVQHAK--N- 1573 (2114)
Q Consensus 1557 ------------------------------------------------------------~~~~~~~~~~i~~~l~--~- 1573 (2114)
......+...+..... +
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0000001111222111 2
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC--------CCH
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG--------LNK 1645 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~--------ls~ 1645 (2114)
++++||||++++.++.++..|...... ...+..+..+||+ |+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l-----------------------------~~~g~~~~~lhg~~~~~~~~~~~~ 450 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKF-----------------------------AEVGVKAHHLIGAGHSSEFKPMTQ 450 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSC-----------------------------C-----CEECCCSCCCTTCCCCCH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccc-----------------------------cccCcceEEEECCCCccCCCCCCH
Confidence 789999999999999999877432000 0013457899999 999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
.+|..+++.|++|.++|||||+++++|||+|++++|| +++.|.++.+|+||+|||||.| +.+++++
T Consensus 451 ~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI----------~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 451 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI----------RYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp HHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE----------EESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE----------EeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999999999999999999999999999 8999999999999999988742 5555555
Q ss_pred ecCc
Q 000129 1726 HAPR 1729 (2114)
Q Consensus 1726 ~~~~ 1729 (2114)
....
T Consensus 517 ~~~~ 520 (699)
T 4gl2_A 517 HSGS 520 (699)
T ss_dssp ESSS
T ss_pred eCCc
Confidence 5443
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-32 Score=376.26 Aligned_cols=280 Identities=15% Similarity=0.178 Sum_probs=196.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.||. | ++|.++++.++.+ .|++++||||||||+ |.+|++..+... +.++||++||++||.|+++.+
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHHH
Confidence 4898 9 9999999999876 569999999999998 888888776542 347999999999999999999
Q ss_pred HHhhccCCc----EEEEEeCCCccChh-----hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCch
Q 000129 571 SNRLQMYDV----KVRELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2114)
Q Consensus 571 ~~~~~~~gi----~v~~l~Gd~~~~~~-----~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~ 641 (2114)
++++...++ +++.++|+.+...+ ....++|+|+||+++..+.+. ++++++|||||||++.+ +|.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~ 192 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASK 192 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STH
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccc
Confidence 999888888 89999999877552 233499999999987433332 56899999999999987 788
Q ss_pred hHHHHHHHHHHH----HhhccccccEEEEccccCChHHHHHHHhccccCceEeecC-CcccccceeEEEeeccCchhHHH
Q 000129 642 VLESIVARTVRQ----IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRF 716 (2114)
Q Consensus 642 ~le~iv~rl~~~----~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~ 716 (2114)
.++.++.++-.. ........|++++|||+++..++...+...+.. +.... ...+..+.+.++ ...+ .
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~--~~~k----~ 264 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAV--NDES----I 264 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEE--SCCC----T
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEe--chhH----H
Confidence 888877654110 011245678999999998754333332211110 01111 111122333333 1111 1
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCc
Q 000129 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2114)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (2114)
..+.. +.... ++++||||+|++.|+.++..|... ..
T Consensus 265 ~~L~~-----ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~--------------------------------------~~ 300 (1054)
T 1gku_B 265 STLSS-----ILEKL-GTGGIIYARTGEEAEEIYESLKNK--------------------------------------FR 300 (1054)
T ss_dssp TTTHH-----HHTTS-CSCEEEEESSHHHHHHHHHTTTTS--------------------------------------SC
T ss_pred HHHHH-----HHhhc-CCCEEEEEcCHHHHHHHHHHHhhc--------------------------------------cC
Confidence 11111 11111 578999999999999988766431 24
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEe----chHhhhhcCCCce-EEEEeccee
Q 000129 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPAH-TVIIKGTQI 848 (2114)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~v-~vVI~~~~~ 848 (2114)
++.+||+| ..+++.|++|.++|||| |+++++|||+|++ ++||+++.|
T Consensus 301 v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 301 IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 78889998 37889999999999999 9999999999995 999995544
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=363.20 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=190.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|| .|+|+|.++++.++++. +++++||||||||++|+++++..+.. ++ ++|||+||++||.|+++++++ |+ .
T Consensus 76 gf-~pt~iQ~~ai~~il~g~-dvlv~ApTGSGKTl~~l~~il~~~~~---~~--~~Lil~PtreLa~Q~~~~l~~-l~-~ 146 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LA-D 146 (1104)
T ss_dssp SS-CCCHHHHHHHHHHTTTC-CEEECCSTTCCHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHT-TS-C
T ss_pred CC-CCCHHHHHHHHHHHcCC-CEEEEeCCCCcHHHHHHHHHHHHHhc---CC--eEEEEechHHHHHHHHHHHHH-hh-C
Confidence 46 69999999999999854 59999999999999998888877633 34 899999999999999999995 76 5
Q ss_pred CCcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHH-
Q 000129 1418 LGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS- 1489 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~s- 1489 (2114)
.+++++.++|+.+.. ...+. .++|+|+||+++..++.. ..++++++||+||||++.... ..+..++.
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~-r~~Dr~L~~ 221 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKAS-RNIDTLLMM 221 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSS-HHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCcccccc-ccchhhhHh
Confidence 688999999998752 22333 369999999998766553 346789999999999876521 11111111
Q ss_pred -----H-HHHHHhhcC-----------CCceEEEEcccC-CCh---hHHHHHhcCCCCceeecCCCCCccCcEEEEeccc
Q 000129 1490 -----R-MRYIASQVE-----------NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2114)
Q Consensus 1490 -----r-l~~i~~~~~-----------~~~riV~lSATl-~n~---~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~ 1548 (2114)
. +..+...++ .+.|++++|||+ +.. ..+..+++..... ....+..+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec-
Confidence 1 223333223 678999999995 432 1234444422110 111111222222211
Q ss_pred ccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHH
Q 000129 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2114)
Q Consensus 1549 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2114)
.. . ......+ .. .++++||||++++.|..++..|..
T Consensus 296 -~k-~-------~~L~~ll-~~--~~~~~LVF~~s~~~a~~l~~~L~~-------------------------------- 331 (1104)
T 4ddu_A 296 -RS-K-------EKLVELL-EI--FRDGILIFAQTEEEGKELYEYLKR-------------------------------- 331 (1104)
T ss_dssp -CC-H-------HHHHHHH-HH--HCSSEEEEESSSHHHHHHHHHHHH--------------------------------
T ss_pred -CH-H-------HHHHHHH-Hh--cCCCEEEEECcHHHHHHHHHHHHh--------------------------------
Confidence 11 1 1112222 22 258999999999999999876632
Q ss_pred HHHhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----cCccccccCCCC-cEEEE
Q 000129 1629 KATLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVV 1682 (2114)
Q Consensus 1629 ~~~l~~gV~-~~H~~ls~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdip~-~~vVI 1682 (2114)
.+..+. .+|| +|+. ++.|++|+++|||| |+++++|||+|+ +++||
T Consensus 332 ---~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 332 ---FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp ---TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred ---CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 234577 8898 3555 99999999999999 999999999999 89999
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=355.97 Aligned_cols=308 Identities=17% Similarity=0.253 Sum_probs=227.5
Q ss_pred CCCCCHHHHHHHHHHHc----CC-CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYN----TD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~----~~-~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
|. +||+|.++++.++. +. .+++++||||||||++|+++++..+.. +. +++|++||++||.|+++.+++.
T Consensus 602 ~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~--~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 602 FE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp SC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CC--eEEEEechHHHHHHHHHHHHHH
Confidence 54 69999999999886 22 379999999999999999998876654 34 9999999999999999999987
Q ss_pred hcCCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH
Q 000129 1414 FGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2114)
Q Consensus 1414 f~~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~ 1486 (2114)
|.. .++++..++|..+... +.+. ..+|+|+||+.+. ....++++++|||||+|+++ ...
T Consensus 676 ~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g----~~~-- 741 (1151)
T 2eyq_A 676 FAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFG----VRH-- 741 (1151)
T ss_dssp STT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSC----HHH--
T ss_pred hhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcC----hHH--
Confidence 765 4788999988655431 1222 4699999997542 23457899999999999964 221
Q ss_pred HHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHh-cCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHH
Q 000129 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2114)
Q Consensus 1487 i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl-~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1565 (2114)
...++. +..+.++++||||+... .+...+ +.....++...+ ....++...+..... .....
T Consensus 742 -~~~l~~----l~~~~~vl~lSATp~p~-~l~~~~~~~~~~~~i~~~~-~~r~~i~~~~~~~~~-----------~~i~~ 803 (1151)
T 2eyq_A 742 -KERIKA----MRANVDILTLTATPIPR-TLNMAMSGMRDLSIIATPP-ARRLAVKTFVREYDS-----------MVVRE 803 (1151)
T ss_dssp -HHHHHH----HHTTSEEEEEESSCCCH-HHHHHHTTTSEEEECCCCC-CBCBCEEEEEEECCH-----------HHHHH
T ss_pred -HHHHHH----hcCCCCEEEEcCCCChh-hHHHHHhcCCCceEEecCC-CCccccEEEEecCCH-----------HHHHH
Confidence 222222 24578999999998543 333333 222212222222 222344444333221 12234
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+...+..+++++|||++++.|..++..|.... .+.++..+||+|+.
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~---------------------------------p~~~v~~lhg~~~~ 850 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAELV---------------------------------PEARIAIGHGQMRE 850 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC---------------------------------TTSCEEECCSSCCH
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---------------------------------CCCeEEEEeCCCCH
Confidence 455555778999999999999998887664321 13579999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCC-CCCHhHHHHhHcccCCCCCCCceEEEEE
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT-DYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~-~~s~~~~lQr~GRAGR~~~~~~G~~iil 1724 (2114)
.+|..+++.|++|+++|||||+++++|+|+|++++|| ..+. +++..+|.||+||+||. +..|.|+++
T Consensus 851 ~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI----------i~~~~~~~l~~l~Qr~GRvgR~--g~~g~~~ll 918 (1151)
T 2eyq_A 851 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII----------IERADHFGLAQLHQLRGRVGRS--HHQAYAWLL 918 (1151)
T ss_dssp HHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE----------ETTTTSSCHHHHHHHHTTCCBT--TBCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE----------EeCCCCCCHHHHHHHHhccCcC--CCceEEEEE
Confidence 9999999999999999999999999999999998888 2333 57899999999999998 578999999
Q ss_pred eecCc
Q 000129 1725 CHAPR 1729 (2114)
Q Consensus 1725 ~~~~~ 1729 (2114)
+...+
T Consensus 919 ~~~~~ 923 (1151)
T 2eyq_A 919 TPHPK 923 (1151)
T ss_dssp ECCGG
T ss_pred ECCcc
Confidence 87653
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=337.55 Aligned_cols=350 Identities=16% Similarity=0.184 Sum_probs=235.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|| .|+|+|..+++.++.++ |..|+||+|||++|.+|++..... +..++||+||++||.|.++.+
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 389 99999999999988775 999999999999999999854322 236999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc-cC-Cch-
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (2114)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.|+ |+ +.|
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 999999999999999998654332 34789999999997 66655431 23456889999999999986 53 332
Q ss_pred ----------hHHHHHHHHHHHHhhcc---------ccccEE-----------------EEccccCC-hHHHHHHHhcc-
Q 000129 642 ----------VLESIVARTVRQIETTK---------EHIRLV-----------------GLSATLPN-YEDVALFLRVN- 683 (2114)
Q Consensus 642 ----------~le~iv~rl~~~~~~~~---------~~~riv-----------------~lSATlpn-~~dva~~l~~~- 683 (2114)
.+...+.++. ..++ ...+++ ++|||.|. ...+...+.+.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv---~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFV---RTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHH---TTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred hhcCCcccchhHHHHHHHHH---HhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 1222223332 2222 244555 77888652 12232222110
Q ss_pred ----ccCce------Eeec-------------------------------------------------------------
Q 000129 684 ----LEKGL------FYFD------------------------------------------------------------- 692 (2114)
Q Consensus 684 ----~~~~~------~~f~------------------------------------------------------------- 692 (2114)
....+ ...+
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 00000 0000
Q ss_pred --------------CCccccccee--EEEeeccCchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHH
Q 000129 693 --------------NSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRD 755 (2114)
Q Consensus 693 --------------~~~rpv~l~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~ 755 (2114)
+..+|+.-.. .++. .....++..+. ..+.+ +..+.++||||+|++.++.++..|..
T Consensus 382 ~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~---~~~~~K~~al~----~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~ 454 (844)
T 1tf5_A 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIY---RTMEGKFKAVA----EDVAQRYMTGQPVLVGTVAVETSELISKLLKN 454 (844)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEECCCEEE---SSHHHHHHHHH----HHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCceEEecCCCCcccccCCcEEE---eCHHHHHHHHH----HHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH
Confidence 0011110000 0000 01122222222 22322 23367899999999999999999987
Q ss_pred HhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcC
Q 000129 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (2114)
Q Consensus 756 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVd 835 (2114)
.++. ...+||++...+|..+.+.|+.| .|+|||++++||+|
T Consensus 455 ~gi~-------------------------------------~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~D 495 (844)
T 1tf5_A 455 KGIP-------------------------------------HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTD 495 (844)
T ss_dssp TTCC-------------------------------------CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCC
T ss_pred CCCC-------------------------------------EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcC
Confidence 6544 34569999999988787777766 69999999999999
Q ss_pred CC--------ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH-------HHHHHh---
Q 000129 836 LP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL--- 897 (2114)
Q Consensus 836 lP--------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~-------~~~~~l--- 897 (2114)
+| +..+||+ |+.+. |...|.||+||+||.| .+|.++.+++..+. +....+
T Consensus 496 I~l~~~V~~~ggl~VIn----~d~p~------s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~ 563 (844)
T 1tf5_A 496 IKLGEGVKELGGLAVVG----TERHE------SRRIDNQLRGRSGRQG--DPGITQFYLSMEDELMRRFGAERTMAMLDR 563 (844)
T ss_dssp CCCCTTSGGGTSEEEEE----SSCCS------SHHHHHHHHTTSSGGG--CCEEEEEEEETTSSGGGSSHHHHHHHHHHH
T ss_pred ccccchhhhcCCcEEEE----ecCCC------CHHHHHhhcCccccCC--CCCeEEEEecHHHHHHHHHhHHHHHHHHHh
Confidence 99 8899999 66655 7889999999999988 78999988775431 112222
Q ss_pred --hcCCCcccchhhHhhHHHH
Q 000129 898 --MNQQLPIESQFVSKLADQL 916 (2114)
Q Consensus 898 --l~~~~pies~l~~~l~d~l 916 (2114)
+....||++.......+..
T Consensus 564 ~~~~~~~~i~~~~~~~~i~~a 584 (844)
T 1tf5_A 564 FGMDDSTPIQSKMVSRAVESS 584 (844)
T ss_dssp HTCCSSSCBCCHHHHHHHHHH
T ss_pred cCCCCccccchHHHHHHHHHH
Confidence 2334678887776654443
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=340.68 Aligned_cols=300 Identities=16% Similarity=0.156 Sum_probs=201.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+..++|+|. +++.++.++++++++||||||||++|++|++..+... +.+++|++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 6788999985 7999999988889999999999999999999876542 2479999999999999998874
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
|..+....+... ........|.++|++.+....... ..++++++|||||||++...+...++.+..
T Consensus 70 ------g~~v~~~~~~~~--~~~~~~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~~~~~~~~~~~~~~--- 135 (451)
T 2jlq_A 70 ------GLPIRYQTPAVK--SDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFTDPCSVAARGYIST--- 135 (451)
T ss_dssp ------TSCEEECCTTCS--CCCCSSCCEEEEEHHHHHHHHHHC---SCCCCCSEEEEETTTCCSHHHHHHHHHHHH---
T ss_pred ------Cceeeeeecccc--ccCCCCceEEEEChHHHHHHhhCc---ccccCCCEEEEeCCccCCcchHHHHHHHHH---
Confidence 334433222211 122345679999999863222221 457889999999999872122222222211
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHh
Q 000129 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 731 (2114)
....++.|+++||||+|+ .+..++... ....... +++|.. .+ ..... .+.+
T Consensus 136 ---~~~~~~~~~i~~SAT~~~--~~~~~~~~~--~~~~~~~---~~~p~~-~~------------~~~~~----~l~~-- 186 (451)
T 2jlq_A 136 ---RVEMGEAAAIFMTATPPG--STDPFPQSN--SPIEDIE---REIPER-SW------------NTGFD----WITD-- 186 (451)
T ss_dssp ---HHHTTSCEEEEECSSCTT--CCCSSCCCS--SCEEEEE---CCCCSS-CC------------SSSCH----HHHH--
T ss_pred ---hhcCCCceEEEEccCCCc--cchhhhcCC--CceEecC---ccCCch-hh------------HHHHH----HHHh--
Confidence 123457999999999874 111111111 0111111 111110 00 00111 1111
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
..+++||||+|++.++.++..|...+ ..+..+|+.+ |..
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g-------------------------------------~~~~~lh~~~----~~~ 225 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSG-------------------------------------KRVIQLSRKT----FDT 225 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTT----HHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcC-------------------------------------CeEEECCHHH----HHH
Confidence 26799999999999999999886532 2345668865 467
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEeccee----cc--CCCCc----cccCCHHHHHHhhcccCCCCCCCceE
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI----YN--PEKGA----WTELSPLDIMQMLGRAGRPQYDSYGE 881 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~----yd--~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2114)
+++.|++|+++|||||+++++|||+|+ ++||+++.. || ..... ..+.|..+|+||+|||||.|.+ .|.
T Consensus 226 ~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~ 303 (451)
T 2jlq_A 226 EYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDD 303 (451)
T ss_dssp HGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCE
T ss_pred HHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Ccc
Confidence 999999999999999999999999999 999985522 11 11000 0456899999999999998842 688
Q ss_pred EEEEcCC
Q 000129 882 GIIITGH 888 (2114)
Q Consensus 882 ~iil~~~ 888 (2114)
+++++..
T Consensus 304 ~~~~~~~ 310 (451)
T 2jlq_A 304 QYVFSGD 310 (451)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 8888754
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=341.44 Aligned_cols=298 Identities=22% Similarity=0.282 Sum_probs=209.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
+++++++||||||||..++ +.+.... +.+|++|+|+||.|+++++++. |+.++.++|+...
T Consensus 155 rk~vlv~apTGSGKT~~al----~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI----QKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH----HHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred CCEEEEEcCCCCCHHHHHH----HHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 4579999999999998443 3333321 3599999999999999998875 7889999998654
Q ss_pred Chhh-hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 591 TRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 591 ~~~~-~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
-... -...+++++|+|.++ ..+.+++|||||+|++.+ ++|..++.++.++ ....++++++||
T Consensus 216 iv~TpGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l------~~~~i~il~~SA 279 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGL------CAEEVHLCGEPA 279 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHC------CEEEEEEEECGG
T ss_pred EecCCCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHcc------CccceEEEeccc
Confidence 2211 123678999988543 346689999999999988 6998888777654 236789999999
Q ss_pred ccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHH
Q 000129 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAK 748 (2114)
Q Consensus 669 Tlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~ 748 (2114)
|.+....+..+.+.. +.+....++.++... .. .... +. .. ....+|||+|+++++.
T Consensus 280 T~~~i~~l~~~~~~~-----~~v~~~~r~~~l~~~-----~~-~l~~---l~---------~~-~~g~iIf~~s~~~ie~ 335 (677)
T 3rc3_A 280 AIDLVMELMYTTGEE-----VEVRDYKRLTPISVL-----DH-ALES---LD---------NL-RPGDCIVCFSKNDIYS 335 (677)
T ss_dssp GHHHHHHHHHHHTCC-----EEEEECCCSSCEEEC-----SS-CCCS---GG---------GC-CTTEEEECSSHHHHHH
T ss_pred hHHHHHHHHHhcCCc-----eEEEEeeecchHHHH-----HH-HHHH---HH---------hc-CCCCEEEEcCHHHHHH
Confidence 976555555444322 122223344444321 00 0000 00 11 2345889999999999
Q ss_pred HHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhC--CCceEEEe
Q 000129 749 TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVS 826 (2114)
Q Consensus 749 ~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVa 826 (2114)
++..|...+ .++++|||+|++++|..+++.|++ |.++||||
T Consensus 336 la~~L~~~g-------------------------------------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVA 378 (677)
T 3rc3_A 336 VSRQIEIRG-------------------------------------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVA 378 (677)
T ss_dssp HHHHHHHTT-------------------------------------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEE
T ss_pred HHHHHHhcC-------------------------------------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEe
Confidence 999887532 468899999999999999999999 99999999
Q ss_pred chHhhhhcCCCceEEEEeccee---ccCCCC-ccccCCHHHHHHhhcccCCCCCC-CceEEEEEcCCCcHHHHHHhh-cC
Q 000129 827 TATLAWGVNLPAHTVIIKGTQI---YNPEKG-AWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSELRYYLSLM-NQ 900 (2114)
Q Consensus 827 T~tla~GVdlP~v~vVI~~~~~---yd~~~g-~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~e~~~~~~ll-~~ 900 (2114)
|+++++|||+ .+++||+.+.. ||+..+ +..++|..+|+||+|||||.|.+ ..|.|++++.. +...+.+++ ..
T Consensus 379 Tdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~ 456 (677)
T 3rc3_A 379 TDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRP 456 (677)
T ss_dssp CGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSC
T ss_pred CcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcC
Confidence 9999999999 67777764331 333211 24578999999999999999866 45887777655 444555554 34
Q ss_pred CCcccc
Q 000129 901 QLPIES 906 (2114)
Q Consensus 901 ~~pies 906 (2114)
..++++
T Consensus 457 ~~~i~~ 462 (677)
T 3rc3_A 457 VDPIRA 462 (677)
T ss_dssp CCCCCC
T ss_pred cchhhh
Confidence 456666
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=332.43 Aligned_cols=306 Identities=15% Similarity=0.208 Sum_probs=211.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..+|+|+|.++++.++.+ .+++++||||+|||++|++++...+... +.+++||+|+++|+.|++++|.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHH
Confidence 348999999999998876 5699999999999999999998877643 23899999999999999999988
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+....++++..++|+.....+.....+|+|+||+. +.+.. ...++++++|||||+|++.. ..++.+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~---l~~~~--~~~~~~~~liIiDE~H~~~~---~~~~~i------ 245 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT---VVKQP--KEWFSQFGMMMNDECHLATG---KSISSI------ 245 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHH---HTTSC--GGGGGGEEEEEEETGGGCCH---HHHHHH------
T ss_pred hhcCCccceEEEecCCccccccccCCcEEEEeHHH---Hhhch--hhhhhcCCEEEEECCcCCCc---ccHHHH------
Confidence 75555678899999877666555678999999995 33321 24677899999999999864 223322
Q ss_pred HHhhccccccEEEEccccCChH-H---HHHHHhccccCceEeecCC-----cccccceeEEEeeccC----------chh
Q 000129 653 QIETTKEHIRLVGLSATLPNYE-D---VALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQVK----------KPL 713 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~-d---va~~l~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~~~----------~~~ 713 (2114)
+.......++++||||+++.. + +..+++.. .+.+... -...+.....+.+... ...
T Consensus 246 -l~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (510)
T 2oca_A 246 -ISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEI----FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQ 320 (510)
T ss_dssp -GGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSE----ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHH
T ss_pred -HHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCe----EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchH
Confidence 233456778999999986421 1 22222211 1111110 0001111111111111 001
Q ss_pred HHHHH------hhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccC
Q 000129 714 QRFQL------MNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (2114)
Q Consensus 714 ~~~~~------~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 785 (2114)
..+.. -...+.+.+.... ++.++|||++ ++.+..++..|.+.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---------------------------- 371 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY---------------------------- 371 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC----------------------------
Confidence 10000 1112233333332 2445666666 888877777776432
Q ss_pred cchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEec-hHhhhhcCCCceEEEEecceeccCCCCccccCCHHHH
Q 000129 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 786 ~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
..+..+||+|+..+|..+++.|++|.++||||| +++++|+|+|++++||. ++++. |..+|
T Consensus 372 ---------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~~~------s~~~~ 432 (510)
T 2oca_A 372 ---------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHGVK------SKIIV 432 (510)
T ss_dssp ---------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSCCC------SCCHH
T ss_pred ---------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCCCC------CHHHH
Confidence 137788999999999999999999999999999 99999999999999998 45443 55689
Q ss_pred HHhhcccCCCCC
Q 000129 865 MQMLGRAGRPQY 876 (2114)
Q Consensus 865 ~Qr~GRAGR~g~ 876 (2114)
+||+|||||.|.
T Consensus 433 ~Q~~GR~gR~g~ 444 (510)
T 2oca_A 433 LQTIGRVLRKHG 444 (510)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHhcccccCC
Confidence 999999999884
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=336.12 Aligned_cols=301 Identities=15% Similarity=0.112 Sum_probs=202.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+..++|+|. +++.+++++++++++||||||||++|++|++..+.. .+. +++|++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRL--RTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCC--cEEEECCCHHHHHHHHHHhc------
Confidence 5778999985 799999999988999999999999999999987765 233 89999999999999998764
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~ 1497 (2114)
|..+....+.... .......|.++|++.+...+.+ ...+.++++||+||||++. .........+... .
T Consensus 70 -g~~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~~~~~--~ 137 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTR--V 137 (451)
T ss_dssp -TSCEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHH---CSCCCCCSEEEEETTTCCS----HHHHHHHHHHHHH--H
T ss_pred -Cceeeeeeccccc--cCCCCceEEEEChHHHHHHhhC---cccccCCCEEEEeCCccCC----cchHHHHHHHHHh--h
Confidence 3444332222211 1223447999999997655543 3568899999999999872 2222222222111 1
Q ss_pred cCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCE
Q 000129 1498 VENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 1577 (2114)
...+.++|+||||++.. +..++.... .+.... +++| ...+. . .+..+. ...+++
T Consensus 138 ~~~~~~~i~~SAT~~~~--~~~~~~~~~-~~~~~~---~~~p---------~~~~~----~----~~~~l~---~~~~~~ 191 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGS--TDPFPQSNS-PIEDIE---REIP---------ERSWN----T----GFDWIT---DYQGKT 191 (451)
T ss_dssp HTTSCEEEEECSSCTTC--CCSSCCCSS-CEEEEE---CCCC---------SSCCS----S----SCHHHH---HCCSCE
T ss_pred cCCCceEEEEccCCCcc--chhhhcCCC-ceEecC---ccCC---------chhhH----H----HHHHHH---hCCCCE
Confidence 24579999999999652 111111100 001000 1111 11110 0 011121 236799
Q ss_pred EEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc
Q 000129 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657 (2114)
Q Consensus 1578 LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~ 1657 (2114)
||||+|++.|+.++..|.. .+..+..+|+.+ +..+++.|++
T Consensus 192 lVF~~s~~~a~~l~~~L~~-----------------------------------~g~~~~~lh~~~----~~~~~~~f~~ 232 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRKT----FDTEYPKTKL 232 (451)
T ss_dssp EEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECTTT----HHHHGGGGGS
T ss_pred EEEcCCHHHHHHHHHHHHH-----------------------------------cCCeEEECCHHH----HHHHHHhhcc
Confidence 9999999999999877632 134577888865 4679999999
Q ss_pred CCceEEEecCccccccCCCCcEEEE-Ee---eeEec--CCcCc----CCCCCHhHHHHhHcccCCCCCCCceEEEEEeec
Q 000129 1658 GKIKVCVMSSSMCWGVPLTAHLVVV-MG---TQYYD--GQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2114)
Q Consensus 1658 g~i~VLVaT~~la~Gvdip~~~vVI-~g---t~~yd--~~~~~----~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~ 1727 (2114)
|+++|||||+++++|+|+|+ .+|| .| ...|+ +.... ..|.+..+|+||+|||||.| ...|.|++++..
T Consensus 233 g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g-~~~g~~~~~~~~ 310 (451)
T 2jlq_A 233 TDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSGD 310 (451)
T ss_dssp SCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECSC
T ss_pred CCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC-CCCccEEEEeCC
Confidence 99999999999999999999 7777 11 11122 11111 27899999999999999985 337889888754
Q ss_pred C
Q 000129 1728 P 1728 (2114)
Q Consensus 1728 ~ 1728 (2114)
+
T Consensus 311 ~ 311 (451)
T 2jlq_A 311 P 311 (451)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=330.05 Aligned_cols=305 Identities=17% Similarity=0.180 Sum_probs=215.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..|+|+|.++++.++.+ .++++++|||||||++|.+++...+.. ..+ ++|||+|+++|+.|++++++ +++...+
T Consensus 112 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~vlvl~P~~~L~~Q~~~~~~-~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHH--CSS--EEEEEESSHHHHHHHHHHHH-HTTSSCG
T ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCC--eEEEEECcHHHHHHHHHHHH-HhhcCCc
Confidence 37999999999999875 569999999999999999998887765 234 99999999999999999997 6665556
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
.++..++|+.+...+....++|+|+||+.+ .+. ....+.++++||+||+|++.. ..+..+...+.
T Consensus 186 ~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~--~~~~~~~~~liIiDE~H~~~~----------~~~~~il~~~~ 250 (510)
T 2oca_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLATG----------KSISSIISGLN 250 (510)
T ss_dssp GGEEECGGGCCTTGGGCTTCSEEEEEHHHH---TTS--CGGGGGGEEEEEEETGGGCCH----------HHHHHHGGGCT
T ss_pred cceEEEecCCccccccccCCcEEEEeHHHH---hhc--hhhhhhcCCEEEEECCcCCCc----------ccHHHHHHhcc
Confidence 788899988776655556679999999964 322 234678899999999999863 22334445556
Q ss_pred CCceEEEEcccCCChh-H---HHHHhcCCCCceeecCCCC-----CccCcEEEEecccc----------cchHHHHHh--
Q 000129 1500 NKIRIVALSTSLANAK-D---LGEWIGATSHGLFNFPPGV-----RPVPLEIHIQGVDI----------TNFEARMQA-- 1558 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~-d---la~wl~~~~~~~~~f~~~~-----rpv~l~~~~~~~~~----------~~~~~~~~~-- 1558 (2114)
...++++||||+++.. + +..+++.. ++.+.... ...+..+....... ..+......
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEI---FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT 327 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSE---ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCe---EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHh
Confidence 6789999999996542 2 33344322 22222210 01111111111111 112221100
Q ss_pred cC----HHHHHHHHHHhcCCC-CEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000129 1559 MT----KPTFTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2114)
Q Consensus 1559 ~~----~~~~~~i~~~l~~~~-~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2114)
.. ......+......++ ++|||++ .+.|..++..|.. ..
T Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~-----------------------------------~~ 371 (510)
T 2oca_A 328 GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN-----------------------------------EY 371 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT-----------------------------------TC
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH-----------------------------------cC
Confidence 01 112222333323344 4566665 7778777655522 11
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEec-CccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCC
Q 000129 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2114)
Q Consensus 1634 ~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR 1712 (2114)
..+..+||+|+..+|..+++.|++|+++||||| +++++|+|+|++++|| .++.|.+..+|+||+|||||
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi----------~~~~~~s~~~~~Q~~GR~gR 441 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV----------LAHGVKSKIIVLQTIGRVLR 441 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE----------ESSCCCSCCHHHHHHHHHHT
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE----------EeCCCCCHHHHHHHHhcccc
Confidence 258999999999999999999999999999999 9999999999999999 77888999999999999999
Q ss_pred CC
Q 000129 1713 PL 1714 (2114)
Q Consensus 1713 ~~ 1714 (2114)
.|
T Consensus 442 ~g 443 (510)
T 2oca_A 442 KH 443 (510)
T ss_dssp TT
T ss_pred cC
Confidence 85
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=326.30 Aligned_cols=328 Identities=16% Similarity=0.131 Sum_probs=224.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|| .|+|+|.++++.++.++ |..|+||+|||++|.+|++..... +. .++||+||++||.|.++.+. .+...
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~---g~--~vlVltptreLA~qd~e~~~-~l~~~ 150 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMG-KIFEF 150 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 69 99999999999998865 899999999999999999844332 23 79999999999999998887 56666
Q ss_pred CCcEEEEEcCCcccchhhc-cCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEeccccccc-CCC-Cch------
Q 000129 1418 LGMRVVELTGETAMDLKLL-EKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIG-GQG-GPV------ 1483 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l-~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~-~~~-g~~------ 1483 (2114)
+|++|+.+.|+.+...+.. ..++|+|+||+++ ..+++... ....++.+.++|+||||.++ ++. .|.
T Consensus 151 lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 7999999999887654333 3579999999998 45555421 23457889999999999876 431 110
Q ss_pred --HHHHHHHHHHHHhhcC---------CCceEE-----------------EEcccCCCh-hHH-----HHHh-cCCCCce
Q 000129 1484 --LEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLANA-KDL-----GEWI-GATSHGL 1528 (2114)
Q Consensus 1484 --le~i~srl~~i~~~~~---------~~~riV-----------------~lSATl~n~-~dl-----a~wl-~~~~~~~ 1528 (2114)
-..+...+..+..+++ +..++. ++|||.+.. ..+ +..+ ......+
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 0123445555656554 345665 788886421 122 1111 1111111
Q ss_pred ee---------c--------------------------------------------------------------------
Q 000129 1529 FN---------F-------------------------------------------------------------------- 1531 (2114)
Q Consensus 1529 ~~---------f-------------------------------------------------------------------- 1531 (2114)
+. |
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 00 0
Q ss_pred ----CCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCccccc
Q 000129 1532 ----PPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607 (2114)
Q Consensus 1532 ----~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~ 1607 (2114)
-|..+|+.-. .............. ..+...+......+.|+||||+|++.|+.++..|..
T Consensus 391 ~vv~IPtn~p~~r~-d~~d~v~~~~~~K~----~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------- 454 (844)
T 1tf5_A 391 QVVTIPTNRPVVRD-DRPDLIYRTMEGKF----KAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------- 454 (844)
T ss_dssp CEEECCCSSCCCCE-ECCCEEESSHHHHH----HHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT-----------
T ss_pred ceEEecCCCCcccc-cCCcEEEeCHHHHH----HHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------
Confidence 0000110000 00000000000011 111222222224578999999999999999877632
Q ss_pred ccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC--------CcE
Q 000129 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHL 1679 (2114)
Q Consensus 1608 ~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip--------~~~ 1679 (2114)
.+..+..+||++++.+|..+.+.|+.| +|+|||++++||+|++ +..
T Consensus 455 ------------------------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 455 ------------------------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp ------------------------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred ------------------------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 234578899999999998887777666 6999999999999999 889
Q ss_pred EEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|| +++.|.+...|.||+||+||. |.+|.++.|++..+
T Consensus 509 ~VI----------n~d~p~s~r~y~hr~GRTGRq--G~~G~s~~~vs~eD 546 (844)
T 1tf5_A 509 AVV----------GTERHESRRIDNQLRGRSGRQ--GDPGITQFYLSMED 546 (844)
T ss_dssp EEE----------ESSCCSSHHHHHHHHTTSSGG--GCCEEEEEEEETTS
T ss_pred EEE----------EecCCCCHHHHHhhcCccccC--CCCCeEEEEecHHH
Confidence 999 899999999999999999998 78999999988665
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=318.82 Aligned_cols=352 Identities=16% Similarity=0.132 Sum_probs=223.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|+ .|+++|..+++.++.++ |..++||+|||++|.+|++..... +..+++++||++||.|.++.+.
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 54 89999999999988774 999999999999999999865432 2369999999999999999999
Q ss_pred HhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc-cC-Cc---
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RG--- 640 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg--- 640 (2114)
.++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.++++|+||||.++ |. +.
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 99999999999999998754332 34689999999995 66655431 12456889999999999987 42 22
Q ss_pred ------------hhHHHHHHHHHHHH-------------hhccccccEE------------------------EEccccC
Q 000129 641 ------------PVLESIVARTVRQI-------------ETTKEHIRLV------------------------GLSATLP 671 (2114)
Q Consensus 641 ------------~~le~iv~rl~~~~-------------~~~~~~~riv------------------------~lSATlp 671 (2114)
..+..|+..+.... ..-....+++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 23444544442100 0000112221 7788865
Q ss_pred C-hHHHHHHHhc-------------------------------------------------cccCc--------------
Q 000129 672 N-YEDVALFLRV-------------------------------------------------NLEKG-------------- 687 (2114)
Q Consensus 672 n-~~dva~~l~~-------------------------------------------------~~~~~-------------- 687 (2114)
. ...+...+.+ .+...
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 2 1111110000 00000
Q ss_pred -----------------------eEeecCCcccccceeE--EEeeccCchhHHHHHhhHHHHHHHHHH-hCCCeEEEEec
Q 000129 688 -----------------------LFYFDNSYRPVPLSQQ--YIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVH 741 (2114)
Q Consensus 688 -----------------------~~~f~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~ 741 (2114)
-++.-+..+|+.-... ++. .....++.++. ..+.+. ..+.|+||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~---~~~~~K~~al~----~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVY---MTEAEKIQAII----EDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEE---SSHHHHHHHHH----HHHHHHHTTTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEE---eCHHHHHHHHH----HHHHHHhcCCCCEEEEEC
Confidence 0001112222211110 111 11222333322 223332 34678999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc
Q 000129 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2114)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2114)
|+..++.++..|...++.. ..+||.+...+|..+.++|+.|
T Consensus 450 sie~se~Ls~~L~~~gi~~-------------------------------------~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKH-------------------------------------NVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCC-------------------------------------EECCTTCHHHHHHHHHTTTSTT--
T ss_pred cHHHHHHHHHHHHHCCCCE-------------------------------------EEecCChhHHHHHHHHhcCCCC--
Confidence 9999999999998876543 3459999999999999999988
Q ss_pred eEEEechHhhhhcCCCc--------------------------------e-----EEEEecceeccCCCCccccCCHHHH
Q 000129 822 QVLVSTATLAWGVNLPA--------------------------------H-----TVIIKGTQIYNPEKGAWTELSPLDI 864 (2114)
Q Consensus 822 ~VLVaT~tla~GVdlP~--------------------------------v-----~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2114)
.|+|||++++||+|++. + .+||+ |+.+. |...|
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~pe------s~riy 560 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TERHE------SRRID 560 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSCCS------SHHHH
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccCCC------CHHHH
Confidence 69999999999999997 3 68998 66554 77899
Q ss_pred HHhhcccCCCCCCCceEEEEEcCCCcH-------HHHHHhh-----cCCCcccchhhHhhHHHH
Q 000129 865 MQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSLM-----NQQLPIESQFVSKLADQL 916 (2114)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~e~-------~~~~~ll-----~~~~pies~l~~~l~d~l 916 (2114)
.||+||+||.| .+|.++.+++..+. +.+..++ ....||++....+..+..
T Consensus 561 ~qr~GRTGRqG--d~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 622 (853)
T 2fsf_A 561 NQLRGRSGRQG--DAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANA 622 (853)
T ss_dssp HHHHTTSSGGG--CCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHHH
T ss_pred HhhccccccCC--CCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHHH
Confidence 99999999987 78999888776541 2222222 234678888776655433
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=325.98 Aligned_cols=302 Identities=17% Similarity=0.192 Sum_probs=212.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.+++++ ++++++|||||||++|+.++... ++ ++||++|+++|+.|+++++++ | |.
T Consensus 93 ~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~------~~--~~Lvl~P~~~L~~Q~~~~~~~-~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH------CS--CEEEEESSHHHHHHHHHHGGG-G----CG
T ss_pred CcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEECCHHHHHHHHHHHHh-C----CC
Confidence 79999999999998754 59999999999999998888753 33 899999999999999998874 5 56
Q ss_pred E-EEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1421 R-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1421 ~-v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
+ ++.++|+... ..+|+|+||+.+......+ ..++++||+||+|.+.+.. +..+ ... -
T Consensus 159 ~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~---~~~~-------~~~-~ 216 (472)
T 2fwr_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES---YVQI-------AQM-S 216 (472)
T ss_dssp GGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTT---THHH-------HHT-C
T ss_pred cceEEECCCcCC------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChH---HHHH-------HHh-c
Confidence 7 8888887653 4689999999876544331 2458999999999987543 2221 122 2
Q ss_pred CCceEEEEcccCCChh----HHHHHhcCCCCc--eeec----CCCCCccCcEEEEeccc---------------------
Q 000129 1500 NKIRIVALSTSLANAK----DLGEWIGATSHG--LFNF----PPGVRPVPLEIHIQGVD--------------------- 1548 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~~----dla~wl~~~~~~--~~~f----~~~~rpv~l~~~~~~~~--------------------- 1548 (2114)
...++++||||+.+.. .+..+++..... ...+ .+......+.+......
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4678999999997532 345555432100 0000 00111111111100000
Q ss_pred ---ccchH----------------------HHHHhcCH---HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhcc
Q 000129 1549 ---ITNFE----------------------ARMQAMTK---PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600 (2114)
Q Consensus 1549 ---~~~~~----------------------~~~~~~~~---~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~ 1600 (2114)
...+. ........ .....++.. ..++++||||+++..+..++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l------ 369 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF------ 369 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT------
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh------
Confidence 00000 00000011 111222222 45789999999999987777433
Q ss_pred CCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEE
Q 000129 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLV 1680 (2114)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~v 1680 (2114)
++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++.+
T Consensus 370 ----------------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 370 ----------------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANV 415 (472)
T ss_dssp ----------------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSE
T ss_pred ----------------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcE
Confidence 3667999999999999999999999999999999999999999999
Q ss_pred EEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEeecCc
Q 000129 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPR 1729 (2114)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~~~~~ 1729 (2114)
|| +++.|.+...|+||+|||||.|.+ ..+.++.++....
T Consensus 416 Vi----------~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 416 GV----------IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp EE----------EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred EE----------EECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 99 677889999999999999999755 5667777777653
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=335.37 Aligned_cols=298 Identities=15% Similarity=0.134 Sum_probs=202.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
...++|+|+.+++. +..+++++++||||||||++|++|+++.+... +.++||++|||+||.|+++.+.
T Consensus 169 ~~~~lpiq~~~i~~-l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~PtreLa~Qi~~~l~- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDI-FRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAPTRVVAAEMEEALR- 236 (618)
T ss_dssp CCCCCCCCCCCGGG-GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT-
T ss_pred cccCCCccccCHHH-HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcChHHHHHHHHHHhc-
Confidence 57788998887665 45567799999999999999999999887652 2479999999999999998875
Q ss_pred hhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+..+. +.+.. ..........+.++|.+.+....... ..++++++|||||||++...+...+..+..++
T Consensus 237 -----~~~v~-~~~~~-l~~~~tp~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-- 304 (618)
T 2whx_A 237 -----GLPIR-YQTPA-VKSDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-- 304 (618)
T ss_dssp -----TSCEE-ECCTT-SSCCCCSSSCEEEEEHHHHHHHHHHC---SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH--
T ss_pred -----CCcee-Eeccc-ceeccCCCceEEEEChHHHHHHHhcc---ccccCCeEEEEECCCCCCccHHHHHHHHHHHh--
Confidence 23344 23221 11111234567778888653222221 35788999999999998323444455444433
Q ss_pred HHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhC
Q 000129 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG 732 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 732 (2114)
...+.|+++||||+++. +..|...+ ...+..... +.... ...+. ..+.+ .
T Consensus 305 ----~~~~~q~il~SAT~~~~--~~~~~~~~--~~~~~v~~~------------~~~~~----~~~ll----~~l~~--~ 354 (618)
T 2whx_A 305 ----EMGEAAAIFMTATPPGS--TDPFPQSN--SPIEDIERE------------IPERS----WNTGF----DWITD--Y 354 (618)
T ss_dssp ----HHTSCEEEEECSSCTTC--CCSSCCCS--SCEEEEECC------------CCSSC----CSSSC----HHHHH--C
T ss_pred ----cccCccEEEEECCCchh--hhhhhccC--Cceeeeccc------------CCHHH----HHHHH----HHHHh--C
Confidence 12578999999998753 21222211 011111110 00000 01111 11222 2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
.+++||||+|++.|+.++..|...+. .+..+||. +|..+
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~-------------------------------------~v~~lhg~----~R~~~ 393 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGK-------------------------------------RVIQLSRK----TFDTE 393 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTT----THHHH
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCC-------------------------------------cEEEEChH----HHHHH
Confidence 67999999999999999999886432 25667874 78889
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCC-----CCc-----cccCCHHHHHHhhcccCCCCCCCceEE
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-----KGA-----WTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~-----~g~-----~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2114)
++.|++|.++|||||+++++|||+| +++||+....++|. .++ -.+.|..+|+||+|||||.|. ..|.+
T Consensus 394 l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~a 471 (618)
T 2whx_A 394 YPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQ 471 (618)
T ss_dssp TTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEE
T ss_pred HHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeE
Confidence 9999999999999999999999998 88887765544431 000 124699999999999999862 47899
Q ss_pred EEEcC
Q 000129 883 IIITG 887 (2114)
Q Consensus 883 iil~~ 887 (2114)
+++++
T Consensus 472 i~l~~ 476 (618)
T 2whx_A 472 YVFSG 476 (618)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99987
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=324.93 Aligned_cols=289 Identities=16% Similarity=0.136 Sum_probs=182.9
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEE
Q 000129 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2114)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l 584 (2114)
+.++.++++++++||||||||++|++|+++.+... +.++||++|||+||.|+++.+. |..+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 56678888999999999999999999999887642 2479999999999999999885 3334333
Q ss_pred eCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEE
Q 000129 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (2114)
Q Consensus 585 ~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv 664 (2114)
.+.... .......+.++|.+.+. +.......++++++|||||||.+.......+.. +.. . ......|+|
T Consensus 79 ~~~~~~--~~t~~~~i~~~~~~~l~---~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~----~~~-~-~~~~~~~~i 147 (459)
T 2z83_A 79 TSAVQR--EHQGNEIVDVMCHATLT---HRLMSPNRVPNYNLFVMDEAHFTDPASIAARGY----IAT-K-VELGEAAAI 147 (459)
T ss_dssp C----------CCCSEEEEEHHHHH---HHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHH----HHH-H-HHTTSCEEE
T ss_pred eccccc--CCCCCcEEEEEchHHHH---HHhhccccccCCcEEEEECCccCCchhhHHHHH----HHH-H-hccCCccEE
Confidence 322111 11233457778887642 222122457889999999999752111111111 111 1 123678999
Q ss_pred EEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000129 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2114)
Q Consensus 665 ~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2114)
+||||+|.. +..+. ....|+.... ..+....... .. ..+.+ .++++||||+|++
T Consensus 148 l~SAT~~~~--~~~~~------------~~~~pi~~~~--~~~~~~~~~~----~~----~~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 148 FMTATPPGT--TDPFP------------DSNAPIHDLQ--DEIPDRAWSS----GY----EWITE--YAGKTVWFVASVK 201 (459)
T ss_dssp EECSSCTTC--CCSSC------------CCSSCEEEEE--CCCCSSCCSS----CC----HHHHH--CCSCEEEECSCHH
T ss_pred EEEcCCCcc--hhhhc------------cCCCCeEEec--ccCCcchhHH----HH----HHHHh--cCCCEEEEeCChH
Confidence 999998742 11111 1111111000 0011111000 01 11111 2679999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEE
Q 000129 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (2114)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VL 824 (2114)
.++.++..|...+. .+..+||. +|..+++.|++|.++||
T Consensus 202 ~~~~l~~~L~~~g~-------------------------------------~v~~lh~~----~R~~~~~~f~~g~~~iL 240 (459)
T 2z83_A 202 MGNEIAMCLQRAGK-------------------------------------KVIQLNRK----SYDTEYPKCKNGDWDFV 240 (459)
T ss_dssp HHHHHHHHHHHTTC-------------------------------------CEEEESTT----CCCCCGGGSSSCCCSEE
T ss_pred HHHHHHHHHHhcCC-------------------------------------cEEecCHH----HHHHHHhhccCCCceEE
Confidence 99999999876432 24566874 78889999999999999
Q ss_pred EechHhhhhcCCCceEEEEeccee------ccCCCC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 825 VSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
|||+++++|||+|+ ++||+.... |+.... .-.+.|..+|+||+|||||.|. ..|.+++++..+
T Consensus 241 VaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 241 ITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp EESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred EECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 99999999999999 888873311 111100 0033589999999999999872 279999998774
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=321.02 Aligned_cols=272 Identities=17% Similarity=0.160 Sum_probs=173.6
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeC
Q 000129 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2114)
++..+++++++||||||||++|++|+++.+... +.+++|++||++||.|+++.+... + +...++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecc
Confidence 345667899999999999999999999977653 247999999999999999887632 2 332222
Q ss_pred CCccChhhhccceEEEcCHhHH-H-----HHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcccc
Q 000129 587 DQTLTRQQIEETQIIVTTPEKW-D-----IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH 660 (2114)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPek~-d-----~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~ 660 (2114)
... .|+||+++ + .+.+.......++++++|||||+|++...+...+ ..+.... ...+
T Consensus 68 ~~~-----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~----~~~~~~~--~~~~ 130 (440)
T 1yks_A 68 AFS-----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAAR----GWAAHRA--RANE 130 (440)
T ss_dssp CCC-----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHH----HHHHHHH--HTTS
T ss_pred cce-----------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHH----HHHHHHh--ccCC
Confidence 211 36677653 1 2222333334578899999999999821221111 1111111 2357
Q ss_pred ccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEe
Q 000129 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (2114)
Q Consensus 661 ~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (2114)
.++++||||++.. +..+.. ...|+ ......+....... . +..+.+ .++++||||
T Consensus 131 ~~~l~~SAT~~~~--~~~~~~------------~~~~~--~~~~~~~~~~~~~~----~----~~~l~~--~~~~~lVF~ 184 (440)
T 1yks_A 131 SATILMTATPPGT--SDEFPH------------SNGEI--EDVQTDIPSEPWNT----G----HDWILA--DKRPTAWFL 184 (440)
T ss_dssp CEEEEECSSCTTC--CCSSCC------------CSSCE--EEEECCCCSSCCSS----S----CHHHHH--CCSCEEEEC
T ss_pred ceEEEEeCCCCch--hhhhhh------------cCCCe--eEeeeccChHHHHH----H----HHHHHh--cCCCEEEEe
Confidence 9999999998642 111111 01111 11101111111001 0 111222 267999999
Q ss_pred cChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCC
Q 000129 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (2114)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~ 820 (2114)
+|++.++.++..|...+ ..++.+|| .+|..+++.|++|+
T Consensus 185 ~s~~~a~~l~~~L~~~~-------------------------------------~~v~~lhg----~~R~~~~~~F~~g~ 223 (440)
T 1yks_A 185 PSIRAANVMAASLRKAG-------------------------------------KSVVVLNR----KTFEREYPTIKQKK 223 (440)
T ss_dssp SCHHHHHHHHHHHHHTT-------------------------------------CCEEECCS----SSCC--------CC
T ss_pred CCHHHHHHHHHHHHHcC-------------------------------------CCEEEecc----hhHHHHHhhhcCCC
Confidence 99999999999887642 23677898 47889999999999
Q ss_pred ceEEEechHhhhhcCCCceEEEEeccee---------------ccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 821 VQVLVSTATLAWGVNLPAHTVIIKGTQI---------------YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~~~~---------------yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
++|||||+++++|||+| +++||+.... |+. +.+..+|+||+|||||.| +..|.|+++
T Consensus 224 ~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~------p~~~~~~~Qr~GR~GR~g-~~~g~~~~l 295 (440)
T 1yks_A 224 PDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL------RISASSAAQRRGRIGRNP-NRDGDSYYY 295 (440)
T ss_dssp CSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE------ECCHHHHHHHHTTSSCCT-TCCCEEEEE
T ss_pred ceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc------ccCHHHHHHhccccCCCC-CCCceEEEE
Confidence 99999999999999999 9988863221 333 348999999999999963 257999999
Q ss_pred c
Q 000129 886 T 886 (2114)
Q Consensus 886 ~ 886 (2114)
+
T Consensus 296 ~ 296 (440)
T 1yks_A 296 S 296 (440)
T ss_dssp C
T ss_pred e
Confidence 6
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=324.75 Aligned_cols=302 Identities=20% Similarity=0.199 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..|+|+|.++++.++.++ ++++++|||+|||++|+.++... . .++||++|+++|+.|++++|.+
T Consensus 92 ~~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~---~-----------~~~Lvl~P~~~L~~Q~~~~~~~- 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL---S-----------TPTLIVVPTLALAEQWKERLGI- 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH---C-----------SCEEEEESSHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc---C-----------CCEEEEECCHHHHHHHHHHHHh-
Confidence 379999999999887764 59999999999999999988764 1 2699999999999999999988
Q ss_pred hccCCcE-EEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 574 LQMYDVK-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 574 ~~~~gi~-v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
+ |++ ++.++|+... ..+|+|+||+.+...... ..+++++|||||+|.+.+.. +..++.
T Consensus 156 ~---~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~~~---~~~~~~---- 214 (472)
T 2fwr_A 156 F---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIAQ---- 214 (472)
T ss_dssp G---CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTSTT---THHHHH----
T ss_pred C---CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCChH---HHHHHH----
Confidence 3 788 9999987653 478999999986333221 22458999999999987632 222221
Q ss_pred HHhhccccccEEEEccccCChH----HHHHHHhccccC-ceEeecCCcccccceeEEEeeccCch---------------
Q 000129 653 QIETTKEHIRLVGLSATLPNYE----DVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKP--------------- 712 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~----dva~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~--------------- 712 (2114)
.....++++||||+++.+ .+..+++..... ....+...+-+ +.....+.+.....
T Consensus 215 ----~~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (472)
T 2fwr_A 215 ----MSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIFVPLAEDERVEYEKREKVYKQF 289 (472)
T ss_dssp ----TCCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEEECCCHHHHHHTTTTTHHHHSC
T ss_pred ----hcCCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 224678899999976422 233333211000 00000000000 00000000000000
Q ss_pred ------------------------------hH---HHH-------HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH
Q 000129 713 ------------------------------LQ---RFQ-------LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARA 752 (2114)
Q Consensus 713 ------------------------------~~---~~~-------~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~ 752 (2114)
.. ... .-...+.+ +.....++++||||++++.+..++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~~~~k~lvF~~~~~~~~~l~~~ 368 (472)
T 2fwr_A 290 LRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLRE-ILERHRKDKIIIFTRHNELVYRISKV 368 (472)
T ss_dssp SSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHH-HHHHTSSSCBCCBCSCHHHHHHHHHH
T ss_pred HHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHH-HHHhCCCCcEEEEECCHHHHHHHHHH
Confidence 00 000 00011222 22334578999999999998888765
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhh
Q 000129 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2114)
Q Consensus 753 L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2114)
|. +..+||+++..+|..+++.|++|.++|||||+++++
T Consensus 369 l~------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~ 406 (472)
T 2fwr_A 369 FL------------------------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 406 (472)
T ss_dssp TT------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred hC------------------------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhc
Confidence 41 334699999999999999999999999999999999
Q ss_pred hcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC-CceEEEEEcCCCc
Q 000129 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSE 890 (2114)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~e 890 (2114)
|+|+|++++||. |+++. ++..|+||+|||||.|.+ +...+|.+++.+.
T Consensus 407 Gldlp~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 407 GIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CcccccCcEEEE----ECCCC------CHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999998 66553 678999999999999854 4555666666543
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=310.81 Aligned_cols=355 Identities=17% Similarity=0.142 Sum_probs=238.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+ .|+++|..+++.++.++ |+.|+||+|||++|.+|++.....+ ..+++|+||+.||.|.++.+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHH
Confidence 477 99999999999888764 9999999999999999997544322 25999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhh-hccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEecccccc-cC-Cch-
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (2114)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.++ |+ |.|
T Consensus 173 ~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 173 GRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 999999999999999987654332 34689999999996 76665531 23456789999999999887 42 322
Q ss_pred ----------hHHHHHHHHHHHHhh------ccccccEE-----------------EEccccCC-hHHHHHHHhcc----
Q 000129 642 ----------VLESIVARTVRQIET------TKEHIRLV-----------------GLSATLPN-YEDVALFLRVN---- 683 (2114)
Q Consensus 642 ----------~le~iv~rl~~~~~~------~~~~~riv-----------------~lSATlpn-~~dva~~l~~~---- 683 (2114)
.+...+.++...+.. -....+++ ++|||.+. ...+...+.+.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 122233333332210 01455666 78999764 23333322210
Q ss_pred -cc-----C-ceEeec---CCcc-----------------cccce---eEEEeec-------------------------
Q 000129 684 -LE-----K-GLFYFD---NSYR-----------------PVPLS---QQYIGIQ------------------------- 708 (2114)
Q Consensus 684 -~~-----~-~~~~f~---~~~r-----------------pv~l~---~~~~~~~------------------------- 708 (2114)
.. . .+...+ ..+- .+.+. +..-.++
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 00 0 000011 0000 00000 0000000
Q ss_pred ------------c--------------CchhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000129 709 ------------V--------------KKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2114)
Q Consensus 709 ------------~--------------~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2114)
. .....++.. +...+.+ +..+.|+||||+|+..++.++..|...++..
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~a----l~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~- 487 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIA----VVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH- 487 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHH----HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHH----HHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE-
Confidence 0 011112222 2222333 2346789999999999999999998876543
Q ss_pred ccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCce--
Q 000129 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH-- 839 (2114)
Q Consensus 762 ~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v-- 839 (2114)
..+||.+...+|..+.+.|+.| .|+|||++++||+|++..
T Consensus 488 ------------------------------------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~ 529 (922)
T 1nkt_A 488 ------------------------------------NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGN 529 (922)
T ss_dssp ------------------------------------EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCC
T ss_pred ------------------------------------EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCC
Confidence 4559999888888888889888 699999999999999964
Q ss_pred --------------------------------------------------EEEEecceeccCCCCccccCCHHHHHHhhc
Q 000129 840 --------------------------------------------------TVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2114)
Q Consensus 840 --------------------------------------------------~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2114)
.+||+ |+.+. |...|.||+|
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~----te~pe------s~riy~qr~G 599 (922)
T 1nkt_A 530 VDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG----TERHE------SRRIDNQLRG 599 (922)
T ss_dssp HHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE----CSCCS------SHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe----ccCCC------CHHHHHHHhc
Confidence 68998 66554 7889999999
Q ss_pred ccCCCCCCCceEEEEEcCCCcHH-------HHHHh-----hcCCCcccchhhHhhHHH
Q 000129 870 RAGRPQYDSYGEGIIITGHSELR-------YYLSL-----MNQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~e~~-------~~~~l-----l~~~~pies~l~~~l~d~ 915 (2114)
|+||.| .+|.++.+++..+.- .+..+ +....||++.+..+..+.
T Consensus 600 RTGRqG--dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~ 655 (922)
T 1nkt_A 600 RSGRQG--DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKS 655 (922)
T ss_dssp TSSGGG--CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHHH
T ss_pred ccccCC--CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHHH
Confidence 999987 789999888765421 12222 234568888877655443
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=326.14 Aligned_cols=284 Identities=19% Similarity=0.160 Sum_probs=191.5
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCc
Q 000129 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2114)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi 579 (2114)
|++.+..++.++++++++||||||||.+|.+++++. +.+++|++|||+||.|+++++.+.+ +.
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 444455566677889999999999999999988752 2379999999999999999887755 55
Q ss_pred EEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccc
Q 000129 580 KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659 (2114)
Q Consensus 580 ~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~ 659 (2114)
.++..+|+... ...++|+|+||+++ +.+. ...++++++|||||||++...+...+.. ++..... ..
T Consensus 284 ~vg~~vG~~~~----~~~~~IlV~TPGrL--l~~~---~l~l~~l~~lVlDEAH~l~~~~~~~l~~----Il~~l~~-~~ 349 (666)
T 3o8b_A 284 DPNIRTGVRTI----TTGAPVTYSTYGKF--LADG---GCSGGAYDIIICDECHSTDSTTILGIGT----VLDQAET-AG 349 (666)
T ss_dssp CCEEECSSCEE----CCCCSEEEEEHHHH--HHTT---SCCTTSCSEEEETTTTCCSHHHHHHHHH----HHHHTTT-TT
T ss_pred CeeEEECcEec----cCCCCEEEECcHHH--HhCC---CcccCcccEEEEccchhcCccHHHHHHH----HHHhhhh-cC
Confidence 67778887553 34689999999985 3222 2456789999999999864333333333 3322221 12
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEE
Q 000129 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIF 739 (2114)
Q Consensus 660 ~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVF 739 (2114)
...++++|||+|+. +... ..........+.+ ...+ .... .. .+...++++|||
T Consensus 350 ~~llil~SAT~~~~------i~~~-~p~i~~v~~~~~~---~i~~---~~~~-~~-------------l~~~~~~~vLVF 402 (666)
T 3o8b_A 350 ARLVVLATATPPGS------VTVP-HPNIEEVALSNTG---EIPF---YGKA-IP-------------IEAIRGGRHLIF 402 (666)
T ss_dssp CSEEEEEESSCTTC------CCCC-CTTEEEEECBSCS---SEEE---TTEE-EC-------------GGGSSSSEEEEE
T ss_pred CceEEEECCCCCcc------cccC-CcceEEEeecccc---hhHH---HHhh-hh-------------hhhccCCcEEEE
Confidence 23378889999862 1100 0001111000000 0000 0000 00 012247899999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCC
Q 000129 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2114)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2114)
|+|++.++.+++.|...+ ..+..+||+|++++ |+++
T Consensus 403 v~Tr~~ae~la~~L~~~g-------------------------------------~~v~~lHG~l~q~e-------r~~~ 438 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLG-------------------------------------INAVAYYRGLDVSV-------IPTI 438 (666)
T ss_dssp CSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTSCGGG-------SCSS
T ss_pred eCCHHHHHHHHHHHHhCC-------------------------------------CcEEEecCCCCHHH-------HHhC
Confidence 999999999999887532 23678899999875 4566
Q ss_pred CceEEEechHhhhhcCCCceEEEEecc----e--e--ccCCCCc---cccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 820 HVQVLVSTATLAWGVNLPAHTVIIKGT----Q--I--YNPEKGA---WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~----~--~--yd~~~g~---~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
..+|||||+++++|||+| +++||+.. . - |||..+. ..+.|..+|+||+||||| | ..|. |.+++.
T Consensus 439 ~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~ 513 (666)
T 3o8b_A 439 GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTP 513 (666)
T ss_dssp SCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCC
T ss_pred CCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEec
Confidence 779999999999999998 88888532 0 1 4443221 145689999999999999 5 6798 888877
Q ss_pred Cc
Q 000129 889 SE 890 (2114)
Q Consensus 889 ~e 890 (2114)
.+
T Consensus 514 ~e 515 (666)
T 3o8b_A 514 GE 515 (666)
T ss_dssp CC
T ss_pred ch
Confidence 55
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=316.23 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=178.3
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccch
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~ 1433 (2114)
+..++|++++||||||||++|++|+++.+... +. +++|++||++||.|+++.++ +..+...++...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~--~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~--- 70 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL--RTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS--- 70 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC--CEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC---
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC--eEEEEcchHHHHHHHHHHHh-------cCCeEEecccce---
Confidence 34577899999999999999999999987662 33 89999999999999998776 223333322211
Q ss_pred hhccCCcEEEEChhhHHH------HHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEE
Q 000129 1434 KLLEKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2114)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~l 1507 (2114)
.++||+++.. +.+++.....++++++||+||+|.+. ..+...+..+..+.. ..+.++++|
T Consensus 71 --------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~----~~~~~~~~~~~~~~~--~~~~~~l~~ 136 (440)
T 1yks_A 71 --------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD----PASIAARGWAAHRAR--ANESATILM 136 (440)
T ss_dssp --------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCS----HHHHHHHHHHHHHHH--TTSCEEEEE
T ss_pred --------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccC----cchHHHHHHHHHHhc--cCCceEEEE
Confidence 3666665432 22333334458899999999999982 222222222222221 357999999
Q ss_pred cccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHH
Q 000129 1508 STSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV 1587 (2114)
Q Consensus 1508 SATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a 1587 (2114)
|||++... .. +... +.++............ ...+..+. ..++++||||++++.|
T Consensus 137 SAT~~~~~--~~-----------~~~~--~~~~~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~s~~~a 190 (440)
T 1yks_A 137 TATPPGTS--DE-----------FPHS--NGEIEDVQTDIPSEPW--------NTGHDWIL---ADKRPTAWFLPSIRAA 190 (440)
T ss_dssp CSSCTTCC--CS-----------SCCC--SSCEEEEECCCCSSCC--------SSSCHHHH---HCCSCEEEECSCHHHH
T ss_pred eCCCCchh--hh-----------hhhc--CCCeeEeeeccChHHH--------HHHHHHHH---hcCCCEEEEeCCHHHH
Confidence 99996431 01 1111 1111111111111110 01112222 2478999999999999
Q ss_pred HHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 000129 1588 RLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667 (2114)
Q Consensus 1588 ~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~ 1667 (2114)
..++..|.. .+..+..+|| .+|..+++.|++|+++|||||+
T Consensus 191 ~~l~~~L~~-----------------------------------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 191 NVMAASLRK-----------------------------------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HHHHHHHHH-----------------------------------TTCCEEECCS----SSCC--------CCCSEEEESS
T ss_pred HHHHHHHHH-----------------------------------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECC
Confidence 999876632 1346899999 5788999999999999999999
Q ss_pred ccccccCCCCcEEEE-EeeeE---e-cCC----cCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1668 SMCWGVPLTAHLVVV-MGTQY---Y-DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1668 ~la~Gvdip~~~vVI-~gt~~---y-d~~----~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
++++|||+| +.+|| .|+.+ | +.. .+++.|.+..+|+||+|||||.| +..|.|++++
T Consensus 232 v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 232 IAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp STTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred hhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 999999999 77776 34422 1 111 13667899999999999999964 5789999996
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-29 Score=334.74 Aligned_cols=290 Identities=16% Similarity=0.162 Sum_probs=188.2
Q ss_pred CCCHHHH-----HHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 495 QLNRVQS-----RVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 495 ~l~~iQ~-----~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
+|+++|+ ++++.++ ..++++|++||||||||++|++++++.+... +.+++|++||++||.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 8999999 9998766 3567899999999999999999999887653 247999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHH------HHHHhccCCCcccccccEEEEecccccccC
Q 000129 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW------DIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~------d~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (2114)
|+++.+..+ ++. ..++... .++||+++ ..+++.......++++++|||||+|++.
T Consensus 285 Q~~~~l~~~----~i~--~~~~~l~-----------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~-- 345 (673)
T 2wv9_A 285 EMAEALRGL----PVR--YLTPAVQ-----------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD-- 345 (673)
T ss_dssp HHHHHTTTS----CCE--ECCC--------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC--
T ss_pred HHHHHHhcC----Cee--eeccccc-----------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC--
Confidence 999887643 332 1111110 13444432 1223222222457889999999999972
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHH
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2114)
.........+.... .....++++||||++.. +..+ .....| +......+.......
T Consensus 346 --~~~~~~~~~l~~~~--~~~~~~vl~~SAT~~~~--i~~~------------~~~~~~--i~~v~~~~~~~~~~~---- 401 (673)
T 2wv9_A 346 --PASIAARGYIATRV--EAGEAAAIFMTATPPGT--SDPF------------PDTNSP--VHDVSSEIPDRAWSS---- 401 (673)
T ss_dssp --HHHHHHHHHHHHHH--HTTSCEEEEECSSCTTC--CCSS------------CCCSSC--EEEEECCCCSSCCSS----
T ss_pred --ccHHHHHHHHHHhc--cccCCcEEEEcCCCChh--hhhh------------cccCCc--eEEEeeecCHHHHHH----
Confidence 11111122222111 12578999999998732 1111 111111 111000011111000
Q ss_pred hhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceE
Q 000129 719 MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2114)
Q Consensus 719 ~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~ 798 (2114)
+ +..+.+ .++++||||++++.++.++..|...+ ..++
T Consensus 402 ~----l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g-------------------------------------~~v~ 438 (673)
T 2wv9_A 402 G----FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAG-------------------------------------KRVI 438 (673)
T ss_dssp C----CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEE
T ss_pred H----HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CeEE
Confidence 1 111211 37899999999999999999887532 2367
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEeccee------ccCCCC----ccccCCHHHHHHhh
Q 000129 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQML 868 (2114)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~ 868 (2114)
.+|| ++|..+++.|++|+++|||||+++++|||+| +++||++... ||+..+ .-.+.+..+|+||+
T Consensus 439 ~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~ 513 (673)
T 2wv9_A 439 QLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRR 513 (673)
T ss_dssp EECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHH
T ss_pred EeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHh
Confidence 7898 3899999999999999999999999999999 9999985422 232200 01345899999999
Q ss_pred cccCCCCCCCceEEEEEc
Q 000129 869 GRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 869 GRAGR~g~d~~G~~iil~ 886 (2114)
|||||.+ +..|.|++++
T Consensus 514 GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 514 GRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp TTSSCCS-SCCCEEEEEC
T ss_pred hccCCCC-CCCCEEEEEE
Confidence 9999973 3679999995
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=326.81 Aligned_cols=299 Identities=14% Similarity=0.083 Sum_probs=201.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
...++|+|+++++.+.+ +++++++||||||||++|++|+++.+.. .+. ++||++|||+||.|+++.++
T Consensus 169 ~~~~lpiq~~~i~~l~~-g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~--~vLvl~PtreLa~Qi~~~l~------- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRK-KRLTIMDLHPGAGKTKRILPSIVREALK--RRL--RTLILAPTRVVAAEMEEALR------- 236 (618)
T ss_dssp CCCCCCCCCCCGGGGST-TCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------
T ss_pred cccCCCccccCHHHHhc-CCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEcChHHHHHHHHHHhc-------
Confidence 46788998887666554 6779999999999999999999988876 233 89999999999999998665
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
+..+. +.+... .........+.++|.+.+...+.. ...+.++++||+||||.+. ..+...+..+.....
T Consensus 237 ~~~v~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~i~~~l~-- 305 (618)
T 2whx_A 237 GLPIR-YQTPAV-KSDHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTRVE-- 305 (618)
T ss_dssp TSCEE-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHHH---CSSCCCCSEEEEESTTCCS----HHHHHHHHHHHHHHH--
T ss_pred CCcee-Eecccc-eeccCCCceEEEEChHHHHHHHhc---cccccCCeEEEEECCCCCC----ccHHHHHHHHHHHhc--
Confidence 23444 222210 111112335778888876654433 3568899999999999872 222223333332221
Q ss_pred CCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEE
Q 000129 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 1578 (2114)
..+.|+|+||||+++.. ..+... .+..+.+.. .++.... +..+..+. ...+++|
T Consensus 306 ~~~~q~il~SAT~~~~~--~~~~~~------------~~~~~~v~~-~~~~~~~--------~~ll~~l~---~~~~~~L 359 (618)
T 2whx_A 306 MGEAAAIFMTATPPGST--DPFPQS------------NSPIEDIER-EIPERSW--------NTGFDWIT---DYQGKTV 359 (618)
T ss_dssp HTSCEEEEECSSCTTCC--CSSCCC------------SSCEEEEEC-CCCSSCC--------SSSCHHHH---HCCSCEE
T ss_pred ccCccEEEEECCCchhh--hhhhcc------------CCceeeecc-cCCHHHH--------HHHHHHHH---hCCCCEE
Confidence 25789999999997541 111111 111011110 0111110 11112222 2477999
Q ss_pred EEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC
Q 000129 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG 1658 (2114)
Q Consensus 1579 VFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g 1658 (2114)
|||+|++.|+.++..|.. .+..+..+||. +|..+++.|++|
T Consensus 360 VF~~s~~~a~~l~~~L~~-----------------------------------~g~~v~~lhg~----~R~~~l~~F~~g 400 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRK----TFDTEYPKTKLT 400 (618)
T ss_dssp EECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT----THHHHTTHHHHS
T ss_pred EEECChhHHHHHHHHHHH-----------------------------------cCCcEEEEChH----HHHHHHHhhcCC
Confidence 999999999999977743 13458889984 788999999999
Q ss_pred CceEEEecCccccccCCCCcEEEEEeeeEe-----cCC----cCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYY-----DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1659 ~i~VLVaT~~la~Gvdip~~~vVI~gt~~y-----d~~----~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+++|||||+++++|+|+|...||..|..+. +.. .+++.|.+..+|+||+|||||.| +..|.|++++.
T Consensus 401 ~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp CCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred CcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 999999999999999999444444444322 111 36678999999999999999985 45899999986
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=310.69 Aligned_cols=325 Identities=14% Similarity=0.102 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|..+++.++.++ +..++||||||++|.+|++..... +. ++++++||++||.|.++.+. .+...+|+
T Consensus 74 ~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~---g~--~vlVltPTreLA~Q~~e~~~-~l~~~lgl 144 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAENNR-PLFEFLGL 144 (853)
T ss_dssp CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT---SS--CCEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc---CC--cEEEEcCCHHHHHHHHHHHH-HHHHhcCC
Confidence 89999999999998765 899999999999999999865433 23 78999999999999999888 56666799
Q ss_pred EEEEEcCCcccchhhc-cCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEecccccccCCCC--c------h--H
Q 000129 1421 RVVELTGETAMDLKLL-EKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGGQGG--P------V--L 1484 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l-~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~~~~g--~------~--l 1484 (2114)
+|+.++|+.+...+.+ ..++|+|+||+++ ..+++... ....++++.++|+||||.++.+.| | . -
T Consensus 145 ~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccc
Confidence 9999999987654333 3579999999997 45665421 234568899999999998773221 1 0 0
Q ss_pred HHHHHHHHHHHhhcCC--------------------CceEE------------------------EEcccCCCh-hHHH-
Q 000129 1485 EVIVSRMRYIASQVEN--------------------KIRIV------------------------ALSTSLANA-KDLG- 1518 (2114)
Q Consensus 1485 e~i~srl~~i~~~~~~--------------------~~riV------------------------~lSATl~n~-~dla- 1518 (2114)
..+...+..+...++. ..++. ++|||.+.. ..+.
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 0111112222222211 22322 678875421 1110
Q ss_pred ----HH-h--------------------cC-----------------------CCC------------------------
Q 000129 1519 ----EW-I--------------------GA-----------------------TSH------------------------ 1526 (2114)
Q Consensus 1519 ----~w-l--------------------~~-----------------------~~~------------------------ 1526 (2114)
.. + |. ...
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 0 00 000
Q ss_pred ---------------ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHH
Q 000129 1527 ---------------GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTA 1591 (2114)
Q Consensus 1527 ---------------~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la 1591 (2114)
.++ .-|..+|+.-.-+ ............ ..+...+......+.|+||||+|+..++.++
T Consensus 385 Ta~te~~ef~~iY~l~vv-~IPtn~p~~R~d~-~d~v~~~~~~K~----~al~~~i~~~~~~gqpvLVft~sie~se~Ls 458 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTV-VVPTNRPMIRKDL-PDLVYMTEAEKI----QAIIEDIKERTAKGQPVLVGTISIEKSELVS 458 (853)
T ss_dssp TTCCCHHHHHHHHCCEEE-ECCCSSCCCCEEC-CCEEESSHHHHH----HHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred CchhHHHHHHHHhCCcEE-EcCCCCCceeecC-CcEEEeCHHHHH----HHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 000 0122233221100 000000111111 1112223232246789999999999999998
Q ss_pred HHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 000129 1592 VDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCW 1671 (2114)
Q Consensus 1592 ~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~ 1671 (2114)
..|.. .+..+..+||++...+|..+.+.|+.| .|+|||++++|
T Consensus 459 ~~L~~-----------------------------------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 501 (853)
T 2fsf_A 459 NELTK-----------------------------------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGR 501 (853)
T ss_dssp HHHHH-----------------------------------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSS
T ss_pred HHHHH-----------------------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccC
Confidence 77733 234578899999999999999999988 69999999999
Q ss_pred ccCCCCc-------------------------------------EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCC
Q 000129 1672 GVPLTAH-------------------------------------LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1672 Gvdip~~-------------------------------------~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
|+|++.. .+|| +++.|.|...|.||+||+||.
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI----------~te~pes~riy~qr~GRTGRq- 570 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII----------GTERHESRRIDNQLRGRSGRQ- 570 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE----------ESSCCSSHHHHHHHHTTSSGG-
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE----------EccCCCCHHHHHhhccccccC-
Confidence 9999973 7899 899999999999999999998
Q ss_pred CCCceEEEEEeecCc
Q 000129 1715 LDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1715 ~~~~G~~iil~~~~~ 1729 (2114)
|.+|.++.|++..+
T Consensus 571 -Gd~G~s~~fls~eD 584 (853)
T 2fsf_A 571 -GDAGSSRFYLSMED 584 (853)
T ss_dssp -GCCEEEEEEEETTS
T ss_pred -CCCeeEEEEecccH
Confidence 78999999988765
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-29 Score=331.63 Aligned_cols=296 Identities=15% Similarity=0.126 Sum_probs=193.9
Q ss_pred CCCHHHH-----HHHHHHH-----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1341 HFNPIQT-----QVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1341 ~~~~iQ~-----q~~~~il-----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
+|+|+|+ ++++.++ ..+++++++||||||||++|++|+++.+.. .+. +++|++||++||.|+++.+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~--~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRL--RTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEccHHHHHHHHHHHH
Confidence 8999999 9998776 357789999999999999999999988765 233 8999999999999999877
Q ss_pred HHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHH
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~sr 1490 (2114)
+ .+ ++ ....+.... ..-...-+-+.+.+. +.+++.....++++++||+||+|++. .........
T Consensus 291 ~-~~----~i--~~~~~~l~~--v~tp~~ll~~l~~~~---l~~~l~~~~~l~~l~lvViDEaH~~~----~~~~~~~~~ 354 (673)
T 2wv9_A 291 R-GL----PV--RYLTPAVQR--EHSGNEIVDVMCHAT---LTHRLMSPLRVPNYNLFVMDEAHFTD----PASIAARGY 354 (673)
T ss_dssp T-TS----CC--EECCC---C--CCCSCCCEEEEEHHH---HHHHHHSSSCCCCCSEEEEESTTCCC----HHHHHHHHH
T ss_pred h-cC----Ce--eeecccccc--cCCHHHHHHHHHhhh---hHHHHhcccccccceEEEEeCCcccC----ccHHHHHHH
Confidence 6 22 22 221111110 000001222333333 23333334568899999999999882 222223333
Q ss_pred HHHHHhhcCCCceEEEEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHH
Q 000129 1491 MRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH 1570 (2114)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 1570 (2114)
+..+.. ....++++||||++.. +..+..... ++......+..... ...+..+.
T Consensus 355 l~~~~~--~~~~~vl~~SAT~~~~-------------i~~~~~~~~--~i~~v~~~~~~~~~--------~~~l~~l~-- 407 (673)
T 2wv9_A 355 IATRVE--AGEAAAIFMTATPPGT-------------SDPFPDTNS--PVHDVSSEIPDRAW--------SSGFEWIT-- 407 (673)
T ss_dssp HHHHHH--TTSCEEEEECSSCTTC-------------CCSSCCCSS--CEEEEECCCCSSCC--------SSCCHHHH--
T ss_pred HHHhcc--ccCCcEEEEcCCCChh-------------hhhhcccCC--ceEEEeeecCHHHH--------HHHHHHHH--
Confidence 333321 2578999999999643 111222111 22211111111111 01111221
Q ss_pred hcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1571 l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
..++++||||++++.|+.++..|.. .+..+..+|| ++|..
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~-----------------------------------~g~~v~~lHg----~eR~~ 447 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQR-----------------------------------AGKRVIQLNR----KSYDT 447 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECS----SSHHH
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCeEEEeCh----HHHHH
Confidence 3578999999999999999877632 1345889999 48999
Q ss_pred HHHHHhcCCceEEEecCccccccCCCCcEEEE-EeeeE-----ecCC----cCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQY-----YDGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~gt~~-----yd~~----~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
+++.|++|+++|||||+++++|||+| +.+|| .|+.+ |+.. ..++.|.+..+|+||+|||||.+ +..|.
T Consensus 448 v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G~ 525 (673)
T 2wv9_A 448 EYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIGD 525 (673)
T ss_dssp HGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCCE
T ss_pred HHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCCE
Confidence 99999999999999999999999999 66666 33321 3322 12578999999999999999974 57899
Q ss_pred EEEEe
Q 000129 1721 CVILC 1725 (2114)
Q Consensus 1721 ~iil~ 1725 (2114)
|++++
T Consensus 526 ai~l~ 530 (673)
T 2wv9_A 526 EYHYG 530 (673)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99996
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=319.27 Aligned_cols=291 Identities=15% Similarity=0.202 Sum_probs=206.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
.+++++++||||||||+.+ ++.+.. .+ +++|++|||+||.|++++|++ + |++++.++|+...-...
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~---~~--~gl~l~PtR~LA~Qi~~~l~~-~----g~~v~lltG~~~~iv~T 219 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFS---AK--SGVYCGPLKLLAHEIFEKSNA-A----GVPCDLVTGEERVTVQP 219 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHH---SS--SEEEEESSHHHHHHHHHHHHH-T----TCCEEEECSSCEECCST
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHh---cC--CeEEEeCHHHHHHHHHHHHHh-c----CCcEEEEECCeeEEecC
Confidence 3567999999999999844 333333 22 459999999999999999884 2 67899999987652111
Q ss_pred -ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1436 -LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1436 -l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
-...+++++|++.+. ..+.++++||||+|++++. +|..++.++.++. ....+++++|||.+.
T Consensus 220 pGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~ 283 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDL 283 (677)
T ss_dssp TCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHH
T ss_pred CCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHH
Confidence 123589999987643 3567899999999999764 6666665554332 257899999999766
Q ss_pred hhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHH
Q 000129 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (2114)
Q Consensus 1514 ~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~ 1593 (2114)
...++.+.+.. +.+....|+.++........ . + . ...+..+|||+|++.|..++..
T Consensus 284 i~~l~~~~~~~----~~v~~~~r~~~l~~~~~~l~--~---------------l-~--~~~~g~iIf~~s~~~ie~la~~ 339 (677)
T 3rc3_A 284 VMELMYTTGEE----VEVRDYKRLTPISVLDHALE--S---------------L-D--NLRPGDCIVCFSKNDIYSVSRQ 339 (677)
T ss_dssp HHHHHHHHTCC----EEEEECCCSSCEEECSSCCC--S---------------G-G--GCCTTEEEECSSHHHHHHHHHH
T ss_pred HHHHHHhcCCc----eEEEEeeecchHHHHHHHHH--H---------------H-H--hcCCCCEEEEcCHHHHHHHHHH
Confidence 66666666443 22222345555443211110 0 0 0 1134568999999999988876
Q ss_pred HHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEecCcccc
Q 000129 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCW 1671 (2114)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~--g~i~VLVaT~~la~ 1671 (2114)
|.. .+.+|+++||+|++++|..+++.|++ |.++|||||+++++
T Consensus 340 L~~-----------------------------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~ 384 (677)
T 3rc3_A 340 IEI-----------------------------------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384 (677)
T ss_dssp HHH-----------------------------------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGS
T ss_pred HHh-----------------------------------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHC
Confidence 632 24579999999999999999999999 99999999999999
Q ss_pred ccCCCCcEEEEEeeeEec----CCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEeecCcHHHHHHHH
Q 000129 1672 GVPLTAHLVVVMGTQYYD----GQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1672 Gvdip~~~vVI~gt~~yd----~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~~~~~~~~~~~~l 1737 (2114)
|||++...||+.|..+|+ |+. ...|.+..+|+||+|||||.|.+ ..|.|++++.. +...+++++
T Consensus 385 GlDi~v~~VI~~~~~k~~~~~~G~~-~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~ 453 (677)
T 3rc3_A 385 GLNLSIRRIIFYSLIKPSINEKGER-ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEIL 453 (677)
T ss_dssp SCCCCBSEEEESCSBC------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHH
T ss_pred CcCcCccEEEECCccccccccCCcc-ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHH
Confidence 999966666667776542 221 24589999999999999999754 46888887755 344555555
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-29 Score=319.17 Aligned_cols=289 Identities=15% Similarity=0.120 Sum_probs=188.9
Q ss_pred HHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcc
Q 000129 1351 TVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (2114)
Q Consensus 1351 ~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~ 1430 (2114)
+.++.++++++++||||||||++|++|+++.+.. .+. ++||++||++||.|+++.++ |..+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRL--RTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 4566778899999999999999999999988765 233 89999999999999998775 334443333221
Q ss_pred cchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1431 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
.. ......+.++|.+.+...+ .....++++++|||||||.+.... ......+..+. ...+.|+|+||||
T Consensus 84 ~~--~t~~~~i~~~~~~~l~~~l---~~~~~l~~~~~iViDEaH~~~~~~----~~~~~~~~~~~--~~~~~~~il~SAT 152 (459)
T 2z83_A 84 RE--HQGNEIVDVMCHATLTHRL---MSPNRVPNYNLFVMDEAHFTDPAS----IAARGYIATKV--ELGEAAAIFMTAT 152 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHH---HSCC-CCCCSEEEESSTTCCSHHH----HHHHHHHHHHH--HTTSCEEEEECSS
T ss_pred cC--CCCCcEEEEEchHHHHHHh---hccccccCCcEEEEECCccCCchh----hHHHHHHHHHh--ccCCccEEEEEcC
Confidence 11 1122357788888754433 334568899999999999752111 11111222221 1357999999999
Q ss_pred CCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHH
Q 000129 1511 LANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLT 1590 (2114)
Q Consensus 1511 l~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~l 1590 (2114)
++... ..+..... |+.......+...+. ..+..+. ...+++||||+|++.|+.+
T Consensus 153 ~~~~~-------------~~~~~~~~--pi~~~~~~~~~~~~~--------~~~~~l~---~~~~~~LVF~~s~~~~~~l 206 (459)
T 2z83_A 153 PPGTT-------------DPFPDSNA--PIHDLQDEIPDRAWS--------SGYEWIT---EYAGKTVWFVASVKMGNEI 206 (459)
T ss_dssp CTTCC-------------CSSCCCSS--CEEEEECCCCSSCCS--------SCCHHHH---HCCSCEEEECSCHHHHHHH
T ss_pred CCcch-------------hhhccCCC--CeEEecccCCcchhH--------HHHHHHH---hcCCCEEEEeCChHHHHHH
Confidence 97431 11111111 222211111111110 0111122 2368999999999999999
Q ss_pred HHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 000129 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2114)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2114)
+..|.. .+..+..+|+. +|..+++.|++|+++|||||++++
T Consensus 207 ~~~L~~-----------------------------------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~ 247 (459)
T 2z83_A 207 AMCLQR-----------------------------------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 247 (459)
T ss_dssp HHHHHH-----------------------------------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC-
T ss_pred HHHHHh-----------------------------------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHH
Confidence 877632 13457888984 788999999999999999999999
Q ss_pred cccCCCCcEEEE-Eeee-----EecCCcC----cCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1671 WGVPLTAHLVVV-MGTQ-----YYDGQEN----AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1671 ~Gvdip~~~vVI-~gt~-----~yd~~~~----~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
+|+|+|+ .+|| .|+. .|++..+ ++.|.+..+|+||+|||||.| ...|.|++++...
T Consensus 248 ~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 248 MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp --CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 9999999 6666 3322 1333322 568999999999999999984 2389999998775
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=319.54 Aligned_cols=327 Identities=16% Similarity=0.144 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHc----CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH-H
Q 000129 494 TQLNRVQSRVYKSALS----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-G 568 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~----~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~-~ 568 (2114)
..|+++|.++++.++. +.+++++++|||||||++++..+.+.+..+.... ......++|||+|+++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~--~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRT--GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSS--CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccc--cccCCCeEEEEeCCHHHHHHHHHH
Confidence 4799999999998876 5677999999999999997666555544321000 0113458999999999999998 6
Q ss_pred HHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhcc--CCCcccccccEEEEecccccccCCchhHHHH
Q 000129 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2114)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~--~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (2114)
.|.. ++..+..+.++. .....+|+|+||+++....+.. ........+++|||||||++....+..+..+
T Consensus 255 ~~~~----~~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~i 325 (590)
T 3h1t_A 255 TFTP----FGDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREI 325 (590)
T ss_dssp CCTT----TCSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHH
T ss_pred HHHh----cchhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHH
Confidence 5554 344455555432 2246799999999874332211 1112345689999999999875433444444
Q ss_pred HHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEeec-------CCcccccceeEEEeec---------
Q 000129 647 VARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQ--------- 708 (2114)
Q Consensus 647 v~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~--------- 708 (2114)
+..+ +..++++||||..+. .+...+++. .++.+. ....| .....+...
T Consensus 326 l~~~--------~~~~~l~lTATP~~~~~~~~~~~f~~----~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~ 391 (590)
T 3h1t_A 326 LEYF--------EPAFQIGMTATPLREDNRDTYRYFGN----PIYTYSLRQGIDDGFLAP--YRVHRVISEVDAAGWRPS 391 (590)
T ss_dssp HHHS--------TTSEEEEEESSCSCTTTHHHHHHSCS----CSEEECHHHHHHHTSSCC--EEEEEEEETTCC------
T ss_pred HHhC--------CcceEEEeccccccccchhHHHHcCC----ceEecCHHHHhhCCccCC--cEEEEeeeeeeccccccc
Confidence 4332 346799999996542 233444432 111110 00011 111101000
Q ss_pred -----------------cCchh------HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccccc
Q 000129 709 -----------------VKKPL------QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765 (2114)
Q Consensus 709 -----------------~~~~~------~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~ 765 (2114)
..... .+...+.+.+.+.+......+++||||++++.|..++..|...+.....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~--- 468 (590)
T 3h1t_A 392 KGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSR--- 468 (590)
T ss_dssp -----------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHT---
T ss_pred cccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhc---
Confidence 00000 0111112222222223333579999999999999999999876532110
Q ss_pred ccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCce---EEEechHhhhhcCCCceEEE
Q 000129 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVI 842 (2114)
Q Consensus 766 ~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~---VLVaT~tla~GVdlP~v~vV 842 (2114)
..+..+..+||.++. +|..+++.|++|..+ |||||+++++|||+|++++|
T Consensus 469 --------------------------~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~V 521 (590)
T 3h1t_A 469 --------------------------KHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNV 521 (590)
T ss_dssp --------------------------TCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEE
T ss_pred --------------------------cCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEE
Confidence 011236677888764 799999999998876 89999999999999999999
Q ss_pred EecceeccCCCCccccCCHHHHHHhhcccCCCCCC-CceEEEEE
Q 000129 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIII 885 (2114)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil 885 (2114)
|. ++++. |...|+||+|||||.+.+ ....++|+
T Consensus 522 i~----~~~~~------s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 522 VL----ARVVN------SMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp EE----ESCCC------CHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EE----EecCC------ChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 98 66665 788999999999998753 23344444
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=308.34 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=177.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
++++|++||||||||++|++++++.+... +.+++|++||++||.|+++.+. |+.+..++|....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 46799999999999999999999666542 2479999999999999988774 4566666665321
Q ss_pred ChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
.......+.+.|.+.+...... ...++++++|||||+|++ ++........+.... .....++++||||+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~---~~~~~~l~~vViDEaH~~----~~~~~~~~~~l~~~~--~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ---GVRVPNYNLYIMDEAHFL----DPASVAARGYIETRV--SMGDAGAIFMTATP 134 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH---TCCCCCCSEEEEESTTCC----SHHHHHHHHHHHHHH--HTTSCEEEEEESSC
T ss_pred --cCCCCceEEEEchHHHHHHHhc---CccccCCCEEEEeCCccC----CccHHHHHHHHHHHh--hCCCCcEEEEeCCC
Confidence 1122455667788865221111 235778999999999986 322222233332221 24579999999998
Q ss_pred CChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHH
Q 000129 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750 (2114)
Q Consensus 671 pn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a 750 (2114)
++. +.. +.....|+ ......+.... ...+ +..+.+ .++++||||++++.++.++
T Consensus 135 ~~~--~~~------------~~~~~~~i--~~~~~~~~~~~----~~~~----~~~l~~--~~~~~lVF~~~~~~~~~l~ 188 (431)
T 2v6i_A 135 PGT--TEA------------FPPSNSPI--IDEETRIPDKA----WNSG----YEWITE--FDGRTVWFVHSIKQGAEIG 188 (431)
T ss_dssp TTC--CCS------------SCCCSSCC--EEEECCCCSSC----CSSC----CHHHHS--CSSCEEEECSSHHHHHHHH
T ss_pred Ccc--hhh------------hcCCCCce--eeccccCCHHH----HHHH----HHHHHc--CCCCEEEEeCCHHHHHHHH
Confidence 741 111 11111111 10000011111 0111 111211 2579999999999999999
Q ss_pred HHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHh
Q 000129 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830 (2114)
Q Consensus 751 ~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl 830 (2114)
..|...+ ..++.+||+ +|..+++.|++|+++|||||+++
T Consensus 189 ~~L~~~~-------------------------------------~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~ 227 (431)
T 2v6i_A 189 TCLQKAG-------------------------------------KKVLYLNRK----TFESEYPKCKSEKWDFVITTDIS 227 (431)
T ss_dssp HHHHHTT-------------------------------------CCEEEESTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred HHHHHcC-------------------------------------CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchH
Confidence 9887642 237788987 68889999999999999999999
Q ss_pred hhhcCCCceEEEEecceeccC---CC----CccccCCHHHHHHhhcccCCCCCCCceEEEEEcC
Q 000129 831 AWGVNLPAHTVIIKGTQIYNP---EK----GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2114)
Q Consensus 831 a~GVdlP~v~vVI~~~~~yd~---~~----g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2114)
++|||+| +..||+....+.| .. ....+.+..+|+||+|||||.|. ..|.++++..
T Consensus 228 e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~~ 289 (431)
T 2v6i_A 228 EMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIYAYSG 289 (431)
T ss_dssp GTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEEEECS
T ss_pred HcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEEEEcC
Confidence 9999999 5554432111100 00 00123488999999999999863 3466666653
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=304.74 Aligned_cols=334 Identities=15% Similarity=0.123 Sum_probs=228.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+ .|+++|..+++.++.++ |..++||+|||++|.+|++..... +. .+++|+||++||.|.++.+. .+...
T Consensus 109 G~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~---g~--~v~VvTpTreLA~Qdae~m~-~l~~~ 178 (922)
T 1nkt_A 109 DQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALA---GN--GVHIVTVNDYLAKRDSEWMG-RVHRF 178 (922)
T ss_dssp SC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTT---TS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHh---CC--CeEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 57 99999999999998755 999999999999999999754333 23 79999999999999998887 56666
Q ss_pred CCcEEEEEcCCcccchhh-ccCCcEEEEChhhH-HHHHhhhc----ccccccceeEEEecccccccC-C-CCc-------
Q 000129 1418 LGMRVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG-Q-GGP------- 1482 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~liIiDEaH~l~~-~-~g~------- 1482 (2114)
+|++|+.++|+.+...+. ...++|+|+||+++ ..+++... ....++.+.++||||||.++. + +.|
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 799999999988765333 23579999999997 45555421 234577899999999997763 2 111
Q ss_pred -hHHHHHHHHHHHHhhcC---------CCceEE-----------------EEcccCCCh-hHHHH-----H-hcCCCCce
Q 000129 1483 -VLEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLANA-KDLGE-----W-IGATSHGL 1528 (2114)
Q Consensus 1483 -~le~i~srl~~i~~~~~---------~~~riV-----------------~lSATl~n~-~dla~-----w-l~~~~~~~ 1528 (2114)
.-..+...+..+...++ +..++. ++|||.+.. ..+.. . +......+
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 01234455556666665 567777 889997652 22221 1 11111111
Q ss_pred ee---------cC----CCCC-------------ccCc---EEEEecccccchH-----------------HHH------
Q 000129 1529 FN---------FP----PGVR-------------PVPL---EIHIQGVDITNFE-----------------ARM------ 1556 (2114)
Q Consensus 1529 ~~---------f~----~~~r-------------pv~l---~~~~~~~~~~~~~-----------------~~~------ 1556 (2114)
+. |. +..| .+.+ ..........++. ..+
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00 00 0000 0000 0011000000000 000
Q ss_pred -------------------HhcC-HHHHHH----HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC
Q 000129 1557 -------------------QAMT-KPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2114)
Q Consensus 1557 -------------------~~~~-~~~~~~----i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~ 1612 (2114)
.... ...+.. +......+.|+||||+|+..++.++..|..
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~---------------- 482 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK---------------- 482 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH----------------
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----------------
Confidence 0000 112222 222224678999999999999999877733
Q ss_pred cccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCc--------------
Q 000129 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH-------------- 1678 (2114)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~-------------- 1678 (2114)
.+..+..+||++...++..+.+.|+.| .|+|||++++||+|++..
T Consensus 483 -------------------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 483 -------------------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp -------------------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred -------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 234578899999988998999988888 699999999999999964
Q ss_pred --------------------------------------EEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceE
Q 000129 1679 --------------------------------------LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2114)
Q Consensus 1679 --------------------------------------~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~ 1720 (2114)
.+|| +++.|.|...|.||+||+||. |.+|.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI----------~te~pes~riy~qr~GRTGRq--GdpG~ 609 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL----------GTERHESRRIDNQLRGRSGRQ--GDPGE 609 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE----------ECSCCSSHHHHHHHHHTSSGG--GCCEE
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE----------eccCCCCHHHHHHHhcccccC--CCCee
Confidence 6899 899999999999999999998 78999
Q ss_pred EEEEeecCcH
Q 000129 1721 CVILCHAPRK 1730 (2114)
Q Consensus 1721 ~iil~~~~~~ 1730 (2114)
++.|++..+.
T Consensus 610 s~fflSleD~ 619 (922)
T 1nkt_A 610 SRFYLSLGDE 619 (922)
T ss_dssp EEEEEETTSH
T ss_pred EEEEechhHH
Confidence 9999987653
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=301.04 Aligned_cols=281 Identities=16% Similarity=0.134 Sum_probs=187.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
+++++++||||||||++|++|+++.+.. .+. +++|++||++||.|+++.+. |..+..++|.... ..-
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~--~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--~~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRL--RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--ERT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc--cCC
Confidence 5679999999999999999999976655 233 89999999999999887654 4566666664321 111
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhH
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~d 1516 (2114)
....+.++|.+.+...+. ....+.++++||+||+|+++ +........++.+. .+.+.++++||||+++.
T Consensus 69 ~~~~~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~-- 137 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT-- 137 (431)
T ss_dssp CCCSEEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC--
T ss_pred CCceEEEEchHHHHHHHh---cCccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc--
Confidence 233567788887654333 24458899999999999862 33333444444443 24579999999999752
Q ss_pred HHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHH
Q 000129 1517 LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596 (2114)
Q Consensus 1517 la~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~ 1596 (2114)
+..+.....| +......+..... ...+..+. ..++++||||++++.|+.++..|..
T Consensus 138 -----------~~~~~~~~~~--i~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~ 193 (431)
T 2v6i_A 138 -----------TEAFPPSNSP--IIDEETRIPDKAW--------NSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQK 193 (431)
T ss_dssp -----------CCSSCCCSSC--CEEEECCCCSSCC--------SSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------hhhhcCCCCc--eeeccccCCHHHH--------HHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 1112222122 1111111111111 11112221 2367899999999999999876632
Q ss_pred hhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC
Q 000129 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT 1676 (2114)
Q Consensus 1597 ~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip 1676 (2114)
. +..++.+||+ +|..+++.|++|+++|||||+++++|+|+|
T Consensus 194 ~-----------------------------------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 194 A-----------------------------------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp T-----------------------------------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred c-----------------------------------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 1 3468999997 688999999999999999999999999999
Q ss_pred CcEEEEEeeeEe---c---CCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1677 AHLVVVMGTQYY---D---GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1677 ~~~vVI~gt~~y---d---~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
...||..|+.++ + -..+++.|.+..+|+||+|||||.| ...|.++++.
T Consensus 235 ~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~~~~~~~~ 288 (431)
T 2v6i_A 235 ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP-EKLGDIYAYS 288 (431)
T ss_dssp CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCCEEEEC
T ss_pred CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC-CCCCeEEEEc
Confidence 666554444332 1 1125678899999999999999975 3455666665
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=315.32 Aligned_cols=329 Identities=16% Similarity=0.133 Sum_probs=190.8
Q ss_pred CCCCHHHHHHHHHHHc----CCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceEEEEEcccHHHHHHHH-HHH
Q 000129 1340 KHFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERY-RDW 1410 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k~l~I~Ptr~La~q~~-~~~ 1410 (2114)
..++|+|.++++.+++ +++++++++|||||||+++..++.+.+.... .....++|||+|+++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999876 6678999999999999998666555554310 002339999999999999998 655
Q ss_pred HHHhcCCCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhh--hcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR--WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1411 ~~~f~~~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~--~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
+ .|+ ..+..+.++. ....++|+|+||+++....+. +........+++||+||||++....+..+..++
T Consensus 257 ~-~~~----~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il 326 (590)
T 3h1t_A 257 T-PFG----DARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREIL 326 (590)
T ss_dssp T-TTC----SSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHH
T ss_pred H-hcc----hhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHH
Confidence 5 443 3344444432 124569999999998766532 112223567899999999998754333333333
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCCCceeecCC---CCCccCcEEEEecc----------------
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPP---GVRPVPLEIHIQGV---------------- 1547 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~~~~~~f~~---~~rpv~l~~~~~~~---------------- 1547 (2114)
. .++ ..++++||||+.+. .+...++|.... .+.+.. .....|........
T Consensus 327 ~-------~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 327 E-------YFE-PAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp H-------HST-TSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred H-------hCC-cceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 2 222 47899999998764 356667764321 110000 00001111111000
Q ss_pred ----------cccchHHHH--HhcCHHHHHHHH---HHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCC
Q 000129 1548 ----------DITNFEARM--QAMTKPTFTAIV---QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2114)
Q Consensus 1548 ----------~~~~~~~~~--~~~~~~~~~~i~---~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~ 1612 (2114)
....+.... ..........+. ......+++||||++++.|..++..|......
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~------------ 465 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD------------ 465 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH------------
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh------------
Confidence 000110000 000111112222 22245678999999999999999888543210
Q ss_pred cccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEecCccccccCCCCcEEEEEeeeEec
Q 000129 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCWGVPLTAHLVVVMGTQYYD 1689 (2114)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~---VLVaT~~la~Gvdip~~~vVI~gt~~yd 1689 (2114)
........+..+||.++. +|..+++.|++|+.+ |||||+++++|+|+|++.+||
T Consensus 466 ---------------~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi------- 522 (590)
T 3h1t_A 466 ---------------LSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVV------- 522 (590)
T ss_dssp ---------------HHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEE-------
T ss_pred ---------------hhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEE-------
Confidence 000012237788998764 799999999998876 899999999999999999999
Q ss_pred CCcCcCCCCCHhHHHHhHcccCCCCCC-CceEEEEEe
Q 000129 1690 GQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILC 1725 (2114)
Q Consensus 1690 ~~~~~~~~~s~~~~lQr~GRAGR~~~~-~~G~~iil~ 1725 (2114)
++..+.+...|+||+|||||.+.+ ....++++-
T Consensus 523 ---~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 523 ---LARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp ---EESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred ---EEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 677889999999999999997532 333444443
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=315.49 Aligned_cols=284 Identities=15% Similarity=0.088 Sum_probs=188.1
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000129 1346 QTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425 (2114)
Q Consensus 1346 Q~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l 1425 (2114)
|++.+..++.++++++++||||||||.+|.+++++ .+. +++|++|||+||.|+++++.+.++ ..+...
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~--~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~ 288 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY--KVLVLNPSVAATLGFGAYMSKAHG----IDPNIR 288 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC--CEEEEESCHHHHHHHHHHHHHHHS----CCCEEE
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC--eEEEEcchHHHHHHHHHHHHHHhC----CCeeEE
Confidence 34444455556788999999999999999998874 133 899999999999999998886664 456667
Q ss_pred cCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEE
Q 000129 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505 (2114)
Q Consensus 1426 ~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV 1505 (2114)
+|+... ....+|+|+||+++ +++ ....++++++||+||||++.. .+...+.++...... .....++
T Consensus 289 vG~~~~----~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~----~~~~~l~~Il~~l~~-~~~~lli 354 (666)
T 3o8b_A 289 TGVRTI----TTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDS----TTILGIGTVLDQAET-AGARLVV 354 (666)
T ss_dssp CSSCEE----CCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSH----HHHHHHHHHHHHTTT-TTCSEEE
T ss_pred ECcEec----cCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCc----cHHHHHHHHHHhhhh-cCCceEE
Confidence 776542 24579999999996 232 234577899999999998742 222233333333221 1223478
Q ss_pred EEcccCCChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChH
Q 000129 1506 ALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2114)
Q Consensus 1506 ~lSATl~n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~ 1585 (2114)
++|||+++. +......+. .+.........+.. .... ... ...+++||||+|++
T Consensus 355 l~SAT~~~~------i~~~~p~i~-----------~v~~~~~~~i~~~~--~~~~-------l~~-~~~~~vLVFv~Tr~ 407 (666)
T 3o8b_A 355 LATATPPGS------VTVPHPNIE-----------EVALSNTGEIPFYG--KAIP-------IEA-IRGGRHLIFCHSKK 407 (666)
T ss_dssp EEESSCTTC------CCCCCTTEE-----------EEECBSCSSEEETT--EEEC-------GGG-SSSSEEEEECSCHH
T ss_pred EECCCCCcc------cccCCcceE-----------EEeecccchhHHHH--hhhh-------hhh-ccCCcEEEEeCCHH
Confidence 889999763 111110110 00000000000000 0000 011 35789999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000129 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2114)
Q Consensus 1586 ~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVa 1665 (2114)
.|+.++..|.. .+..+..+||+|++++ |.++..+||||
T Consensus 408 ~ae~la~~L~~-----------------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 408 KCDELAAKLSG-----------------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp HHHHHHHHHHT-----------------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred HHHHHHHHHHh-----------------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 99999977732 1346899999999886 45667799999
Q ss_pred cCccccccCCCCcEEEE-EeeeE-----e--cCCcC---cCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1666 SSSMCWGVPLTAHLVVV-MGTQY-----Y--DGQEN---AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1666 T~~la~Gvdip~~~vVI-~gt~~-----y--d~~~~---~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
|+++++|||+| +.+|| .|... | |+... ...|.+..+|+||+||||| +..|. +.|+.+.+
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR---g~~G~-i~lvt~~e 515 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR---GRRGI-YRFVTPGE 515 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS---SSCEE-EEESCCCC
T ss_pred CChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC---CCCCE-EEEEecch
Confidence 99999999998 77776 23111 1 11110 1178899999999999999 57899 88887654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=297.01 Aligned_cols=328 Identities=17% Similarity=0.172 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
.+|+|+|.+++..++.. ..++|+++|||+|||.+++..+...+..+. ..+++||+|+ +|+.|+..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHH
Confidence 47999999999988765 457999999999999999888877765542 2269999999 999999999987
Q ss_pred hhccCCcEEEEEeCCCccCh-----hhhccceEEEcCHhHHHHHHhccCC--CcccccccEEEEecccccccCC--chhH
Q 000129 573 RLQMYDVKVRELSGDQTLTR-----QQIEETQIIVTTPEKWDIITRKSGD--RTYTQLVKLLIIDEIHLLHDNR--GPVL 643 (2114)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~-----~~~~~~~IiV~TPek~d~l~r~~~~--~~~l~~v~liIiDEaH~l~d~r--g~~l 643 (2114)
++ |+++..++|+..... ......+|+|+|++.+ .+.... ......+++|||||||++.... ....
T Consensus 222 ~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L---~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFA---RRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHH---HTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHH---hhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 76 567777766542211 1234679999999954 222111 1223468999999999996521 1111
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCC--hHHHHH---HHhccc-------------------------cC-------
Q 000129 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVAL---FLRVNL-------------------------EK------- 686 (2114)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riv~lSATlpn--~~dva~---~l~~~~-------------------------~~------- 686 (2114)
...+..+ .....++++||||... ..++.. |+.... ..
T Consensus 296 ~~~l~~L------~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~ 369 (968)
T 3dmq_A 296 YQAIEQL------AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDE 369 (968)
T ss_dssp HHHHHHH------HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGG
T ss_pred HHHHHHH------hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHH
Confidence 2222222 1234568999999521 222111 111000 00
Q ss_pred --------------------------------------------ceEeecCCcccc---cce-eEEEeeccCchhHHH--
Q 000129 687 --------------------------------------------GLFYFDNSYRPV---PLS-QQYIGIQVKKPLQRF-- 716 (2114)
Q Consensus 687 --------------------------------------------~~~~f~~~~rpv---~l~-~~~~~~~~~~~~~~~-- 716 (2114)
+...+......+ |.. ...+.+.........
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~ 449 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIK 449 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHH
Confidence 000000000000 000 000000000000000
Q ss_pred --------------------------------------HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhh
Q 000129 717 --------------------------------------QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758 (2114)
Q Consensus 717 --------------------------------------~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~ 758 (2114)
..-...+.+ +.....++++||||+++..+..++..|...
T Consensus 450 ~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~-ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~-- 526 (968)
T 3dmq_A 450 VSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMG-YLTSHRSQKVLVICAKAATALQLEQVLRER-- 526 (968)
T ss_dssp HHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHH-HHHHTSSSCCCEECSSTHHHHHHHHHHHTT--
T ss_pred HHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHH-HHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--
Confidence 000111222 223345789999999999999998888642
Q ss_pred cccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCC--ceEEEechHhhhhcCC
Q 000129 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAWGVNL 836 (2114)
Q Consensus 759 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~--i~VLVaT~tla~GVdl 836 (2114)
....+..+||+|+..+|..+++.|++|. ++|||||+++++|+|+
T Consensus 527 ----------------------------------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl 572 (968)
T 3dmq_A 527 ----------------------------------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNF 572 (968)
T ss_dssp ----------------------------------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCC
T ss_pred ----------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCc
Confidence 1234778899999999999999999998 9999999999999999
Q ss_pred CceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 837 P~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|++++||+ ||++. ++..|.||+||+||.|..+....+.+.....
T Consensus 573 ~~~~~VI~----~d~p~------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 573 QFASHMVM----FDLPF------NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp TTCCEEEC----SSCCS------SHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred ccCcEEEE----ecCCC------CHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 99999998 66653 7789999999999998554444444444443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=271.52 Aligned_cols=323 Identities=16% Similarity=0.158 Sum_probs=206.9
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
..|+|+|.+++..+. ..+.+++++.|||+|||+++...+.. +......+ ++|||+| .+|+.|+.++++ +|..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~~~~--~~LIv~P-~~l~~qw~~e~~-~~~~ 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELT--PSLVICP-LSVLKNWEEELS-KFAP 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTTCCS--SEEEEEC-STTHHHHHHHHH-HHCT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCCC--CEEEEcc-HHHHHHHHHHHH-HHCC
Confidence 379999999988653 45667999999999999998555444 44323334 8999999 568999999998 4543
Q ss_pred CCCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+.++..++|+... ......+|+|+|++.+..... .....+++||+||||.+.+.....+ ..+.
T Consensus 111 --~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~----~~l~---- 173 (500)
T 1z63_A 111 --HLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIF----KAVK---- 173 (500)
T ss_dssp --TSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHH----HHHH----
T ss_pred --CceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHH----HHHH----
Confidence 4677777776532 234567999999998643222 1234689999999999975442211 1111
Q ss_pred hcCCCceEEEEcccCCC--hhHHH---HHhcCCC-------------------------------CceeecCCCC----C
Q 000129 1497 QVENKIRIVALSTSLAN--AKDLG---EWIGATS-------------------------------HGLFNFPPGV----R 1536 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n--~~dla---~wl~~~~-------------------------------~~~~~f~~~~----r 1536 (2114)
.+ ...+.++||||+.. ..++. .|+.... ..++...... .
T Consensus 174 ~l-~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 EL-KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TS-CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hh-ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 22 24577999999843 22322 2221110 0011000000 0
Q ss_pred ccCcEE-EEecccccc-----hHHHHHh---------------------------c---------------C---HHHHH
Q 000129 1537 PVPLEI-HIQGVDITN-----FEARMQA---------------------------M---------------T---KPTFT 1565 (2114)
Q Consensus 1537 pv~l~~-~~~~~~~~~-----~~~~~~~---------------------------~---------------~---~~~~~ 1565 (2114)
..|-.. ......... +...... . . .....
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 111111 111111110 0000000 0 0 00112
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+......+.++||||+++..+..++..|. ...+.++..+||+++.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~----------------------------------~~~~~~~~~~~g~~~~ 378 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIE----------------------------------KELNTEVPFLYGELSK 378 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHH----------------------------------HHHTCCCCEEETTSCH
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHH----------------------------------HhhCCCeEEEECCCCH
Confidence 233333567899999999998877765442 2235568899999999
Q ss_pred HHHHHHHHHHhcC-Cce-EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1646 TDQEVVSALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g-~i~-VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
.+|..+++.|++| ..+ +|+||+++++|+|+|++.+|| +++.|.++..+.||+||++|.|......++.
T Consensus 379 ~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi----------~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~ 448 (500)
T 1z63_A 379 KERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448 (500)
T ss_dssp HHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE----------ESSCCSCC---CHHHHTTTTTTTTSCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE----------EeCCCCCcchHHHHHHHHHHcCCCCeeEEEE
Confidence 9999999999998 565 799999999999999999999 7889999999999999999998777777787
Q ss_pred EeecCc
Q 000129 1724 LCHAPR 1729 (2114)
Q Consensus 1724 l~~~~~ 1729 (2114)
++....
T Consensus 449 lv~~~t 454 (500)
T 1z63_A 449 LISVGT 454 (500)
T ss_dssp EEETTS
T ss_pred EEeCCC
Confidence 777654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=292.14 Aligned_cols=332 Identities=14% Similarity=0.143 Sum_probs=213.1
Q ss_pred CCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1340 KHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
..|+|+|.+++..++.. ..++|++++||+|||+++..++...+.. ...+ +++||+|+ +|+.|+..++.+.|
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~--rvLIVvP~-sLl~Qw~~E~~~~f---- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAE--RVLIIVPE-TLQHQWLVEMLRRF---- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCC--CEEEECCT-TTHHHHHHHHHHHS----
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCC--eEEEEeCH-HHHHHHHHHHHHHh----
Confidence 37999999999988763 4579999999999999998777766655 3334 89999999 99999999998776
Q ss_pred CcEEEEEcCCcccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHH
Q 000129 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~ 1493 (2114)
+.++..++|+.... ...+...+|+|+|++.+....... ......++++||+||||++.......- .....+..
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~-~~l~~~~~dlVIvDEAH~~kn~~~~~s-~~~~~l~~ 301 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL-EHLCEAEWDLLVVDEAHHLVWSEDAPS-REYQAIEQ 301 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT-HHHHTSCCCEEEECCSSCCCCBTTBCC-HHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH-HHhhhcCCCEEEehhhHhhcCCCCcch-HHHHHHHH
Confidence 45666666654222 123345699999998764211110 112245789999999999975432210 01122222
Q ss_pred HHhhcCCCceEEEEcccCCC--hhHHH---HHhcCCCC--------------------------------------ceee
Q 000129 1494 IASQVENKIRIVALSTSLAN--AKDLG---EWIGATSH--------------------------------------GLFN 1530 (2114)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n--~~dla---~wl~~~~~--------------------------------------~~~~ 1530 (2114)
+. ....++++||||+.. ..++. .++..... ..+.
T Consensus 302 L~---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 302 LA---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HH---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred Hh---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 32 234579999999843 22111 11111000 0000
Q ss_pred ---------------------------------------cCC---CCCcc---CcEEEEecccccchHHHHH--------
Q 000129 1531 ---------------------------------------FPP---GVRPV---PLEIHIQGVDITNFEARMQ-------- 1557 (2114)
Q Consensus 1531 ---------------------------------------f~~---~~rpv---~l~~~~~~~~~~~~~~~~~-------- 1557 (2114)
+.. ..... .........+. .+.....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~-~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPT-QYQTAIKVSGIMGAR 457 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCH-HHHHHHHHHHHTTCC
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCH-HHHHHHHHHhhhhhh
Confidence 000 00000 00000000000 0000000
Q ss_pred ---------------------------hcCHHHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccc
Q 000129 1558 ---------------------------AMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2114)
Q Consensus 1558 ---------------------------~~~~~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (2114)
.........+...+ ..++++||||+++..+..++..|..
T Consensus 458 ~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~------------ 525 (968)
T 3dmq_A 458 KSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRE------------ 525 (968)
T ss_dssp SSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHT------------
T ss_pred hhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHH------------
Confidence 00011122222222 4678999999999999888866632
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEecCccccccCCCCcEEEEEeee
Q 000129 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK--IKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~--i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
..+..+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++.+||
T Consensus 526 ----------------------~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI---- 579 (968)
T 3dmq_A 526 ----------------------REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV---- 579 (968)
T ss_dssp ----------------------TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE----
T ss_pred ----------------------HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE----
Confidence 12456899999999999999999999998 99999999999999999999999
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+++.|.++..|.||+||+||.|......++.++....
T Consensus 580 ------~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 580 ------MFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp ------CSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred ------EecCCCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 8999999999999999999996544445555555443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=269.78 Aligned_cols=324 Identities=16% Similarity=0.154 Sum_probs=203.5
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
..|+|+|.+++..+. ..+.++|+++|||+|||.+++..+......+ ...++|||+| .+|+.|+.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~---------~~~~~LIv~P-~~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN---------ELTPSLVICP-LSVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT---------CCSSEEEEEC-STTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---------CCCCEEEEcc-HHHHHHHHHHH
Confidence 379999999987653 4556799999999999999866555443322 1236999999 57999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl 650 (2114)
.+++. ++++..++|+.. .......+|+|+||+.+..... .....+++||+||||.+.+....... .+
T Consensus 106 ~~~~~--~~~v~~~~g~~~--~~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~-~l--- 172 (500)
T 1z63_A 106 SKFAP--HLRFAVFHEDRS--KIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK-AV--- 172 (500)
T ss_dssp HHHCT--TSCEEECSSSTT--SCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH-HH---
T ss_pred HHHCC--CceEEEEecCch--hccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH-HH---
Confidence 98764 467777777653 2334578999999997621111 11235789999999999753322211 11
Q ss_pred HHHHhhccccccEEEEccccC--ChHHHHH---HHhcccc-----------------------------CceEeecCCc-
Q 000129 651 VRQIETTKEHIRLVGLSATLP--NYEDVAL---FLRVNLE-----------------------------KGLFYFDNSY- 695 (2114)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlp--n~~dva~---~l~~~~~-----------------------------~~~~~f~~~~- 695 (2114)
... ...+.++||||.. +..++.. |+....- .+........
T Consensus 173 ----~~l-~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 173 ----KEL-KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp ----HTS-CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred ----Hhh-ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 122 3456799999952 2333322 2211000 0011100000
Q ss_pred ----ccccce-eEEEeeccCchhHH-HHH---------------------------hh----------------------
Q 000129 696 ----RPVPLS-QQYIGIQVKKPLQR-FQL---------------------------MN---------------------- 720 (2114)
Q Consensus 696 ----rpv~l~-~~~~~~~~~~~~~~-~~~---------------------------~~---------------------- 720 (2114)
...|-. ...+.+........ +.. +.
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~ 327 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKM 327 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHH
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhH
Confidence 001111 11111111100000 000 00
Q ss_pred HHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEE
Q 000129 721 DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2114)
Q Consensus 721 ~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~ 799 (2114)
..+.+.+.+.. .+.++||||+++..+..++..|.... ...+..
T Consensus 328 ~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~ 371 (500)
T 1z63_A 328 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPF 371 (500)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH------------------------------------TCCCCE
T ss_pred HHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh------------------------------------CCCeEE
Confidence 01112222222 46799999999999988888876531 123567
Q ss_pred ecCCCCHHHHHHHHHHHhCC-Cce-EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC
Q 000129 800 HHAGMTRGDRQLVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2114)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2114)
+||+++..+|..+++.|++| .++ +|+||+++++|+|+|++++||.++.+++|. .|.||+||++|.|..
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~----------~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQT 441 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC-------------CHHHHTTTTTTTT
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcc----------hHHHHHHHHHHcCCC
Confidence 89999999999999999988 565 799999999999999999999966666554 599999999999977
Q ss_pred CceEEEEEcCCCcH
Q 000129 878 SYGEGIIITGHSEL 891 (2114)
Q Consensus 878 ~~G~~iil~~~~e~ 891 (2114)
+...++.++.....
T Consensus 442 ~~v~v~~lv~~~ti 455 (500)
T 1z63_A 442 RNVIVHKLISVGTL 455 (500)
T ss_dssp SCEEEEEEEETTSH
T ss_pred CeeEEEEEEeCCCH
Confidence 76667777666543
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=251.91 Aligned_cols=226 Identities=19% Similarity=0.195 Sum_probs=141.9
Q ss_pred EeccccccCcccccccccccCCCCCCCCCCccCCCCCCcccc------------cChhHHHHHhc-CCCCCCHHHHHHHH
Q 000129 1285 VVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTA------------LRNPLYEALYQ-GFKHFNPIQTQVFT 1351 (2114)
Q Consensus 1285 ~vSD~wl~~e~~~~is~~~l~lp~~~~~~t~lldl~p~~~~~------------L~~~~~~~l~~-gf~~~~~iQ~q~~~ 1351 (2114)
-.||.|.+.+....-+..++..|+..........++.....+ +.....+.+.. ||..|+|+|.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~ 86 (262)
T 3ly5_A 7 HSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIR 86 (262)
T ss_dssp ---------------------------------------CCBSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHH
T ss_pred cccccCccchhHHHHhhcccCCCccccccccCCCCccccccccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 358888888876666666665555444333332222222111 44455555554 79999999999999
Q ss_pred HHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000129 1352 VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2114)
Q Consensus 1352 ~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~ 1429 (2114)
.++.+ +|++++||||||||++|++|+++.+.... ...+.++||++||++||.|+++.+++ +....+..+..++|+.
T Consensus 87 ~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~g~~ 164 (262)
T 3ly5_A 87 PLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE-LMTHHVHTYGLIMGGS 164 (262)
T ss_dssp HHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCSCEEEECSSS
T ss_pred HHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCceEEEEECCC
Confidence 99986 55999999999999999999999887521 11233899999999999999999995 5445688899999987
Q ss_pred ccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEE
Q 000129 1430 AMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2114)
Q Consensus 1430 ~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~ 1506 (2114)
..... .....+|+|+||++|..++++.. ...+.++++||+||||++.+.+ +...+..+...++...|+++
T Consensus 165 ~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~l~~lViDEah~l~~~~------~~~~l~~i~~~~~~~~q~l~ 237 (262)
T 3ly5_A 165 NRSAEAQKLGNGINIIVATPGRLLDHMQNTP-GFMYKNLQCLVIDEADRILDVG------FEEELKQIIKLLPTRRQTML 237 (262)
T ss_dssp CHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-TCCCTTCCEEEECSHHHHHHTT------CHHHHHHHHHHSCSSSEEEE
T ss_pred CHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-CcccccCCEEEEcChHHHhhhh------HHHHHHHHHHhCCCCCeEEE
Confidence 65422 22457999999999988877632 2357889999999999987653 23334444455577899999
Q ss_pred EcccCCCh-hHHHH
Q 000129 1507 LSTSLANA-KDLGE 1519 (2114)
Q Consensus 1507 lSATl~n~-~dla~ 1519 (2114)
||||+++. .+++.
T Consensus 238 ~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 238 FSATQTRKVEDLAR 251 (262)
T ss_dssp ECSSCCHHHHHHHH
T ss_pred EEecCCHHHHHHHH
Confidence 99999863 34444
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=250.64 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=149.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++.+...+ .||.+|+++|.++++.++.+ ++++++||||||||++|++|+++.+...... ...+.++||++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~lil~Pt 135 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGTGVLILSPT 135 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCceEEEEeCC
Confidence 566666666 79999999999999999887 5599999999999999999999998764211 1235689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++||.|+++.+++++...++.+..++|+....... ..+++|+|+||++|....+.... ..++++++|||||||++.
T Consensus 136 ~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~-~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 136 RELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG-FMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCC-cccccCCEEEEcChHHHh
Confidence 99999999999999988899999999987765432 24689999999998655554432 357789999999999988
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~ 682 (2114)
+ ++++.++.++.+ .+...|+++||||+|+ ++..+...
T Consensus 215 ~~~~~~~l~~i~~~-------~~~~~q~l~~SAT~~~--~v~~~~~~ 252 (262)
T 3ly5_A 215 DVGFEEELKQIIKL-------LPTRRQTMLFSATQTR--KVEDLARI 252 (262)
T ss_dssp HTTCHHHHHHHHHH-------SCSSSEEEEECSSCCH--HHHHHHHH
T ss_pred hhhHHHHHHHHHHh-------CCCCCeEEEEEecCCH--HHHHHHHH
Confidence 7 577777766554 3567899999999984 45555543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-23 Score=249.65 Aligned_cols=195 Identities=16% Similarity=0.267 Sum_probs=151.6
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEE
Q 000129 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395 (2114)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~ 1395 (2114)
....+.-..|.....+.+.. ||..|+|+|.++++.++.+ +.|++++||||||||++|++|+++.+.... .++++||
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--~~~~~li 167 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--KYPQCLC 167 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--CSCCEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--CCceEEE
Confidence 33344444566666777765 7999999999999999986 477999999999999999999999887632 3348999
Q ss_pred EcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccc
Q 000129 1396 IAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1396 I~Ptr~La~q~~~~~~~~f~~~-~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
++||++||.|+++.++ .++.. .++++..+.|+..........++|+||||+++..++.+. ....++++++||+||||
T Consensus 168 l~PtreLa~Q~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 168 LSPTYELALQTGKVIE-QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp ECSSHHHHHHHHHHHH-HHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHH
T ss_pred EcCcHHHHHHHHHHHH-HHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHH
Confidence 9999999999999998 45543 478888899887765544556799999999998877542 23457899999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1475 ~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
.+.+..| +...+..+...++...|++++|||+++. ..++..+
T Consensus 246 ~l~~~~~-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 246 VMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHHSTT-----HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHhhccC-----cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 9876332 4444555666677889999999999873 3455544
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=242.32 Aligned_cols=188 Identities=19% Similarity=0.193 Sum_probs=148.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++.+...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+...... ....+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~lil~P 110 (242)
T 3fe2_A 35 NFPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFL---ERGDGPICLVLAP 110 (242)
T ss_dssp TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCC---CTTCCCSEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhcccc---ccCCCCEEEEEeC
Confidence 3677777776 68999999999999998876 4699999999999999999999998754311 1123568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.+++...++++..++|+.....+. ..+++|+|+||+++..+.+... ..++++++|||||||++
T Consensus 111 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 111 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--TNLRRTTYLVLDEADRM 188 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS--CCCTTCCEEEETTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CCcccccEEEEeCHHHH
Confidence 999999999999998888899999999987765432 3468999999999844433332 35788999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
.+ ++++.++.++.+ .++..|+++||||+|+ ++..+....
T Consensus 189 ~~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~--~~~~~~~~~ 228 (242)
T 3fe2_A 189 LDMGFEPQIRKIVDQ-------IRPDRQTLMWSATWPK--EVRQLAEDF 228 (242)
T ss_dssp HHTTCHHHHHHHHTT-------SCSSCEEEEEESCCCH--HHHHHHHHH
T ss_pred hhhCcHHHHHHHHHh-------CCccceEEEEEeecCH--HHHHHHHHH
Confidence 87 577777666443 3568899999999984 455555433
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=273.74 Aligned_cols=349 Identities=13% Similarity=0.135 Sum_probs=195.6
Q ss_pred CCCHHHHHHHHHHHcC-------------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 495 QLNRVQSRVYKSALSS-------------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-------------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.|+|+|.+|++.++.. +.+.++++|||||||+++ +++++.+.... ...++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~--------~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD--------FIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------TCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------CCceEEEEeCcHH
Confidence 5999999999998762 356999999999999998 56665553221 1248999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCccCh--hhh--ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc
Q 000129 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQI--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~--~~~--~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
|+.|+.+.|..+... . +.|..+... ..+ ...+|+|+||+++..+.+.......+....+||+||||++..
T Consensus 342 L~~Q~~~~f~~f~~~-~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-S-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT-C-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc-c-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999875432 1 123222211 112 368999999999854443322123455778999999998642
Q ss_pred CCchhHHHHHHHHHHHHhhccccccEEEEccccCCh------HHHHHHHhccccCceEeecC-----CcccccceeEEEe
Q 000129 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY------EDVALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG 706 (2114)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~------~dva~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~ 706 (2114)
|..+.. +. ...++.+++|||||.... .....+++.. ++.+.- .-.-+|+...+..
T Consensus 416 --~~~~~~----I~----~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~----i~~Y~l~~AI~dg~l~p~~v~y~~ 481 (1038)
T 2w00_A 416 --GEAQKN----LK----KKFKRYYQFGFTGTPIFPENALGSETTASVFGRE----LHSYVITDAIRDEKVLKFKVDYND 481 (1038)
T ss_dssp --HHHHHH----HH----HHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE----EEEECHHHHHHHTSSCCEEEEECC
T ss_pred --hHHHHH----HH----HhCCcccEEEEeCCccccccchhhhHHHHHhCCe----eEeecHHHHHhCCCcCCeEEEEEe
Confidence 222222 21 123568899999996532 1344444321 111100 0001122222221
Q ss_pred ecc-------C-c--------------hhHHHHHhhHHHHHHHHHHh-------CCCeEEEEecChHHHHHHHHHHHHHh
Q 000129 707 IQV-------K-K--------------PLQRFQLMNDLCYEKVVAVA-------GKHQVLIFVHSRKETAKTARAIRDTA 757 (2114)
Q Consensus 707 ~~~-------~-~--------------~~~~~~~~~~~~~~~i~~~~-------~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2114)
+.. . . ...+...+...+........ .+.++||||+|+..|..++..|...+
T Consensus 482 v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 482 VRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 100 0 0 00111111111212221221 24589999999999999999998765
Q ss_pred hcc-------cccc--cccccCchhHHHHHhhhcccC---------cc----hhhhhcc-----CceEEecC-CCCHHHH
Q 000129 758 LEN-------DTLG--RFLKEDSVSREILQSHTDMVK---------SN----DLKDLLP-----YGFAIHHA-GMTRGDR 809 (2114)
Q Consensus 758 ~~~-------~~l~--~~l~~~~~~~~~l~~~~~~~~---------~~----~L~~ll~-----~gv~~hHa-gl~~~~R 809 (2114)
... ..+. ..+..+ .+.+. . ...... +. .+...+. +|-.+.+. +-....|
T Consensus 562 ~~~~~~~~~~~~~k~avv~s~~-~~~~~-~-~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R 638 (1038)
T 2w00_A 562 EEAANKSATYKPLRIATIFSFA-ANEEQ-N-AIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYY 638 (1038)
T ss_dssp HHHTTTSSSCCCCCEEEECCCC-C--------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHH
T ss_pred hhhcccccccccCcEEEEEeCC-Ccccc-c-cccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 210 0000 000000 00000 0 000000 00 0000000 00000000 0012358
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCC--CceEEEEEc
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIIT 886 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~ 886 (2114)
..+.+.|++|.++|||+|+.+.+|+|+|.+.+++ +|.+. +...|+||+||+||.+.+ ..|.++-+.
T Consensus 639 ~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDkpl------~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 639 RDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDKNL------RYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EESCC------CHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred HHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----EccCC------CccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 8999999999999999999999999999997655 55543 677899999999998753 234444443
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=272.27 Aligned_cols=366 Identities=14% Similarity=0.190 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHHcC-------------CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNT-------------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~-------------~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~ 1407 (2114)
.|+|+|.+|++.++.. +.+.+++++||||||+++ +++++.+... +...++|||+|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 5999999999998751 356999999999999998 6666655442 22239999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCccc-c-hhhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1408 RDWEIKFGQGLGMRVVELTGETAM-D-LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~l~G~~~~-~-~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+.+. .|+.. . +.|..+. . ...+ ..++|+|+||+++..++........+....+||+||||+... |
T Consensus 348 ~~f~-~f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~-- 416 (1038)
T 2w00_A 348 KEYQ-RFSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--G-- 416 (1038)
T ss_dssp HHHH-TTSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--H--
T ss_pred HHHH-Hhccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--h--
Confidence 9888 46532 1 1222221 1 1223 356999999999988765422122456789999999998642 1
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh------hHHHHHhcCCCCceeecCC-----CCCccCcEEEEecccccch
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA------KDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNF 1552 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~------~dla~wl~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~~~~ 1552 (2114)
.....+ ...+ ++.++++||||+... .....++|.. ++.+.- ...-+|+.+....... .+
T Consensus 417 --~~~~~I---~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~---i~~Y~l~~AI~dg~l~p~~v~y~~v~~-~~ 486 (1038)
T 2w00_A 417 --EAQKNL---KKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRE---LHSYVITDAIRDEKVLKFKVDYNDVRP-QF 486 (1038)
T ss_dssp --HHHHHH---HHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE---EEEECHHHHHHHTSSCCEEEEECCCCG-GG
T ss_pred --HHHHHH---HHhC-CcccEEEEeCCccccccchhhhHHHHHhCCe---eEeecHHHHHhCCCcCCeEEEEEeccc-hh
Confidence 122222 2333 357999999999753 2456666643 111110 0011233332221110 00
Q ss_pred H--------HHHHh-------cCH----HHHHHHHHHhc----------CCCCEEEEeCChHHHHHHHHHHHHhhcc---
Q 000129 1553 E--------ARMQA-------MTK----PTFTAIVQHAK----------NEKPALVFVPSRKYVRLTAVDLMTYSSM--- 1600 (2114)
Q Consensus 1553 ~--------~~~~~-------~~~----~~~~~i~~~l~----------~~~~~LVFv~sr~~a~~la~~L~~~~~~--- 1600 (2114)
. ..... ... .....+..+.. .+.++||||+|+..|..++..|......
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 0 00000 011 11222333221 2357999999999999999988765421
Q ss_pred --CC-c-ccc-cccCCCcc-------cc-----hhh-HhhhhHHHHHHHh-----ccceEeecC-CCCHHHHHHHHHHHh
Q 000129 1601 --DG-D-QKS-AFLLWPAE-------EV-----EPF-IDNIQEEMLKATL-----RHGVGYLHE-GLNKTDQEVVSALFE 1656 (2114)
Q Consensus 1601 --~~-~-~~~-~~l~~~~~-------~l-----~~~-~~~i~d~~L~~~l-----~~gV~~~H~-~ls~~dR~~v~~~F~ 1656 (2114)
.. . .+. ...+.+.. .+ .+. ...-....+...+ .+|-.+.+. +-....|..+.+.|+
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk 646 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK 646 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 00 0 000 01111000 00 000 0000000010000 011111000 011346899999999
Q ss_pred cCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC--CceEEEEEeecCcHHHHH
Q 000129 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1657 ~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~--~~G~~iil~~~~~~~~~~ 1734 (2114)
+|.++|||+|+++.+|+|+|.+.+++ .+.|.+...|+||+||++|.+.+ ..|.++-+.. ....+.
T Consensus 647 ~g~i~ILIvvd~lltGfDiP~l~tly-----------lDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~--~~~~l~ 713 (1038)
T 2w00_A 647 NQDIDLLIVVGMFLTGFDAPTLNTLF-----------VDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD--LERSTI 713 (1038)
T ss_dssp TTSSSEEEESSTTSSSCCCTTEEEEE-----------EESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC--CHHHHH
T ss_pred cCCCeEEEEcchHHhCcCcccccEEE-----------EccCCCccceeehhhccCcCCCCCCCcEEEEEccc--cHHHHH
Confidence 99999999999999999999997664 56788889999999999998642 2466665553 455566
Q ss_pred HHHHhccCC
Q 000129 1735 KFLRLTQNP 1743 (2114)
Q Consensus 1735 ~~lRl~~nP 1743 (2114)
..+++..+.
T Consensus 714 ~Al~~y~~~ 722 (1038)
T 2w00_A 714 DAITLFGDK 722 (1038)
T ss_dssp HHHHHTSCS
T ss_pred HHHHHHhCC
Confidence 666555443
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-23 Score=249.72 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=145.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (2114)
.|++++...+ .||.+|+++|.++++.++.+ +.|++++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--------~~~~~lil~ 169 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--------CCceEEEEc
Confidence 3677777766 79999999999999999886 467999999999999999999999875432 345899999
Q ss_pred ccHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
||++||.|+++.+..+...+ ++.+..+.|+..........++|+|+||+++ +.+.+.. ...++++++|||||||++
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHH
Confidence 99999999999999877654 7889999998887776667889999999997 4443322 245789999999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
.+..| +...+.++ ....+..+|++++|||+|+ .+..+....
T Consensus 248 ~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~--~v~~~a~~~ 288 (300)
T 3fmo_B 248 IATQG--HQDQSIRI---QRMLPRNCQMLLFSATFED--SVWKFAQKV 288 (300)
T ss_dssp HHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCH--HHHHHHHHH
T ss_pred hhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCH--HHHHHHHHH
Confidence 86322 22222222 2334668999999999985 455555443
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-21 Score=243.41 Aligned_cols=346 Identities=16% Similarity=0.178 Sum_probs=228.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|....-.+..| . |....||+|||++|.+|++-....+ ..+.+++|+..||.+-++.+..++
T Consensus 75 r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~lnAL~G-----------~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 75 RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLNALIG-----------KGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHHHhcC-----------CceEEEeccHHHHHhHHHHHHHHH
Confidence 5788998887755444 3 8899999999999999987544333 258999999999999999999999
Q ss_pred ccCCcEEEEEeCC--------------------------------------------------Cc-cChhhhccceEEEc
Q 000129 575 QMYDVKVRELSGD--------------------------------------------------QT-LTRQQIEETQIIVT 603 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd--------------------------------------------------~~-~~~~~~~~~~IiV~ 603 (2114)
..+|++|+.++.+ .+ ..++..-.++|+++
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 9999999998872 11 11223346899999
Q ss_pred CHhHH--HHHHhcc---CCCcccccccEEEEecccccc-c-CCchh-----------HHHHHHH----------------
Q 000129 604 TPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV-----------LESIVAR---------------- 649 (2114)
Q Consensus 604 TPek~--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~~-----------le~iv~r---------------- 649 (2114)
|..-+ |.|.-+. .+........+.||||||.++ | .|.|. +-..+.+
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99886 6665543 223345678999999999652 2 12110 0000000
Q ss_pred ----------------------------------H---HHHHhhc-----------------------------------
Q 000129 650 ----------------------------------T---VRQIETT----------------------------------- 657 (2114)
Q Consensus 650 ----------------------------------l---~~~~~~~----------------------------------- 657 (2114)
+ ++.....
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0 0000000
Q ss_pred --------------------------cccccEEEEccccCChHHHHHHHhccccCceEeecCCcccccceeE-EEeeccC
Q 000129 658 --------------------------KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVK 710 (2114)
Q Consensus 658 --------------------------~~~~riv~lSATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~-~~~~~~~ 710 (2114)
..-.++.|||+|+.. +-..|.... .-.+.. .+..+|+.-... ...+.
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~t--e~~Ef~~iY-~l~vv~-IPtnkp~~R~d~~d~vy~-- 454 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKT--EESEFVQVY-GMEVVV-IPTHKPMIRKDHDDLVFR-- 454 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGG--GHHHHHHHS-CCCEEE-CCCSSCCCCEECCCEEES--
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCch--HHHHHHHHh-CCeEEE-ECCCCCcceeecCcEEEe--
Confidence 001268999999875 223343332 122333 344555432211 11111
Q ss_pred chhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchh
Q 000129 711 KPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2114)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (2114)
....+..++.. .+.+. ..+.|+||||+|++.++.++..|...++.
T Consensus 455 t~~eK~~al~~----~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~------------------------------ 500 (822)
T 3jux_A 455 TQKEKYEKIVE----EIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIP------------------------------ 500 (822)
T ss_dssp SHHHHHHHHHH----HHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCC------------------------------
T ss_pred cHHHHHHHHHH----HHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCC------------------------------
Confidence 12233333332 23222 34679999999999999999999876543
Q ss_pred hhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCC--------ceEEEEecceeccCCCCccccCCH
Q 000129 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELSP 861 (2114)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP--------~v~vVI~~~~~yd~~~g~~~~~s~ 861 (2114)
...+||+....+|..+...|+.| .|+|||++++||+|++ +..+||+ |+.+. |.
T Consensus 501 -------~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~Pe------s~ 561 (822)
T 3jux_A 501 -------HQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TERHE------SR 561 (822)
T ss_dssp -------CEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSCCS------SH
T ss_pred -------EEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCCCC------CH
Confidence 34569998777777788888777 6999999999999998 6678998 66554 78
Q ss_pred HHHHHhhcccCCCCCCCceEEEEEcCCCcH-------HHHHHh-----hcCCCcccchhhHhhHHH
Q 000129 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL-----MNQQLPIESQFVSKLADQ 915 (2114)
Q Consensus 862 ~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~-------~~~~~l-----l~~~~pies~l~~~l~d~ 915 (2114)
..|.||+|||||.| .+|.++.+++..+. +.+..+ +....||++.+.++..++
T Consensus 562 r~y~qriGRTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~ 625 (822)
T 3jux_A 562 RIDNQLRGRAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIEN 625 (822)
T ss_dssp HHHHHHHTTSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHH
T ss_pred HHHHHhhCccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHH
Confidence 89999999999988 78999988877652 122222 234578999887765543
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=241.30 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=144.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~~lil~Pt 120 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETP--------QRLFALVLTPT 120 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCceEEEEeCC
Confidence 577777777 78999999999999998876 55999999999999999999999887642 23579999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.++++....++++..++|+.....+. ...++|+|+||+++....+.... ..+..+++||+||||++.
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG-FNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCC-cCccccCEEEEcChhhhh
Confidence 99999999999998888899999999987654332 35789999999998444333221 347789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~ 682 (2114)
+ .++..++.++. ..+...|+++||||+++ .+.++...
T Consensus 200 ~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~v~~~~~~ 237 (249)
T 3ber_A 200 NMDFETEVDKILK-------VIPRDRKTFLFSATMTK--KVQKLQRA 237 (249)
T ss_dssp HTTCHHHHHHHHH-------SSCSSSEEEEEESSCCH--HHHHHHHH
T ss_pred ccChHHHHHHHHH-------hCCCCCeEEEEeccCCH--HHHHHHHH
Confidence 6 56666665543 23567899999999984 45444443
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=235.98 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=140.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++.+...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+...... .....+.++||++|
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~P 102 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTP 102 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECS
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeC
Confidence 3566666666 68999999999999998876 5599999999999999999999887543211 01124568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.+.. ..++++..++|+.....+ ...+++|+|+||+++..+.+... ..++++++|||||||++
T Consensus 103 t~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~--~~~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 103 TRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS--VNLRSITYLVIDEADKM 179 (228)
T ss_dssp SHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC--CCCTTCCEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cCcccceEEEEECHHHH
Confidence 9999999999998864 458889999998765533 23568999999999855444332 45788999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~ 687 (2114)
.+ +++..++.++.+ ...+.|++++|||+|+ .+..+.......+
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~--~~~~~~~~~l~~p 223 (228)
T 3iuy_A 180 LDMEFEPQIRKILLD-------VRPDRQTVMTSATWPD--TVRQLALSYLKDP 223 (228)
T ss_dssp HHTTCHHHHHHHHHH-------SCSSCEEEEEESCCCH--HHHHHHHTTCSSC
T ss_pred hccchHHHHHHHHHh-------CCcCCeEEEEEeeCCH--HHHHHHHHHCCCC
Confidence 77 577777766543 3568899999999984 5556665443333
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=240.67 Aligned_cols=194 Identities=19% Similarity=0.293 Sum_probs=146.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.+++++...+ .||..|+++|.++++.++.+. +++++||||||||++|++|++..+.... ..+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~~~lil~P 106 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQPA-------NKGFRALIISP 106 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSCC-------SSSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhcc-------cCCceEEEEeC
Confidence 5677777777 699999999999999988764 5999999999999999999999885432 13458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh----hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~----~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
+++|+.|+++.+.+++...++++..++|+..... .....++|+|+||+++..+.+.......++++++|||||||+
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 107 TRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 9999999999999998888888888887643222 123578999999999865555543335678899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~ 687 (2114)
+.+ .++...+.+. +++. .....+.|+++||||+| .++..|+......+
T Consensus 187 ~~~~~~~~~~~~~~-~i~~--~~~~~~~~~~~~SAT~~--~~v~~~~~~~l~~p 235 (245)
T 3dkp_A 187 LFEDGKTGFRDQLA-SIFL--ACTSHKVRRAMFSATFA--YDVEQWCKLNLDNV 235 (245)
T ss_dssp HHHHC--CHHHHHH-HHHH--HCCCTTCEEEEEESSCC--HHHHHHHHHHSSSC
T ss_pred hcccccccHHHHHH-HHHH--hcCCCCcEEEEEeccCC--HHHHHHHHHhCCCC
Confidence 976 3222233222 2221 12345789999999998 57778887655443
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=235.88 Aligned_cols=188 Identities=21% Similarity=0.343 Sum_probs=145.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++.+.+ .||.+|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 81 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAPT 81 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceEEEEcCc
Confidence 567777777 68999999999999998876 56999999999999999999998875431 24589999999
Q ss_pred HHHHHHHHHHHHHhhccC----CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecc
Q 000129 560 KALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEa 632 (2114)
++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+..+++||+|||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEa 159 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDEA 159 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECSH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC--CCcCcceEEEEcCc
Confidence 999999999999887765 78899999987654332 2368999999999854444322 45678999999999
Q ss_pred ccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE
Q 000129 633 HLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF 689 (2114)
Q Consensus 633 H~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~~~~ 689 (2114)
|++.+ .++..++.++. ..+...|++++|||+|+ ++.+|+......+..
T Consensus 160 h~~~~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAA-------RMPKDLQMLVFSATIPE--KLKPFLKKYMENPTF 208 (219)
T ss_dssp HHHHHTTCHHHHHHHHH-------TSCTTCEEEEEESCCCG--GGHHHHHHHCSSCEE
T ss_pred hHHhhhChHHHHHHHHH-------hCCcccEEEEEecCCCH--HHHHHHHHHcCCCeE
Confidence 99876 45555554433 23567899999999984 566666654444433
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=229.42 Aligned_cols=183 Identities=20% Similarity=0.299 Sum_probs=143.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+.... .+.++||++|
T Consensus 9 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 79 (206)
T 1vec_A 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVP 79 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeEEEEeC
Confidence 3567777776 68999999999999998876 56999999999999999999998865321 3458999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
+++|+.|+++.+.+.+... ++++..++|+....... ...++|+|+||+++....+... ..++++++||+||||+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC--cCcccCCEEEEEChHH
Confidence 9999999999999988766 78999999987755432 3568999999999844443322 4577899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
+.+ .++..++.++.. .+...|++++|||+| .++.+++...
T Consensus 158 ~~~~~~~~~l~~i~~~-------~~~~~~~l~~SAT~~--~~~~~~~~~~ 198 (206)
T 1vec_A 158 LLSQDFVQIMEDIILT-------LPKNRQILLYSATFP--LSVQKFMNSH 198 (206)
T ss_dssp HTSTTTHHHHHHHHHH-------SCTTCEEEEEESCCC--HHHHHHHHHH
T ss_pred hHhhCcHHHHHHHHHh-------CCccceEEEEEeeCC--HHHHHHHHHH
Confidence 876 566665555433 345789999999998 4566665543
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=233.43 Aligned_cols=183 Identities=18% Similarity=0.253 Sum_probs=144.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|+++++..+.... .+.++||++|+
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 101 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQILILAPT 101 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEeCC
Confidence 577777776 78999999999999998876 56999999999999999999998875431 24589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.++.... ++++..++|+...... ...+++|+|+||+++..+.+.. ...++++++||+||||++.
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD--YLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT--SSCGGGCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC--CcccccCCEEEeCCchHhh
Confidence 999999999999887654 8899999998765443 3457899999999985444432 2456889999999999997
Q ss_pred c-C-CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000129 637 D-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2114)
Q Consensus 637 d-~-rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~ 684 (2114)
+ + ++..++.++.+ .+...|++++|||+| .++.+++....
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~lSAT~~--~~~~~~~~~~~ 220 (230)
T 2oxc_A 180 EEGSFQEQINWIYSS-------LPASKQMLAVSATYP--EFLANALTKYM 220 (230)
T ss_dssp STTSSHHHHHHHHHH-------SCSSCEEEEEESCCC--HHHHHHHTTTC
T ss_pred cCcchHHHHHHHHHh-------CCCCCeEEEEEeccC--HHHHHHHHHHc
Confidence 6 3 66666555443 345789999999987 45777776543
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=235.23 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=142.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEcccHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Ptr~L 1402 (2114)
+.......+.. ||..|+|+|.++++.++++ .+++++||||||||++|++|++..+.... ...++++||++||++|
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L 114 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHH
Confidence 44555556654 7999999999999999986 45999999999999999999999887531 1223489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|+++.+++ +....++++..++|+..... .....++|+|+||+++..++++. ...+++++++|+||||++.+.
T Consensus 115 ~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 115 AQQVQQVAAE-YCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHH-HHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHH-HHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhhh
Confidence 9999999984 54445889999999876542 22345799999999998888763 346889999999999998765
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+ +...+..+...++.+.|++++|||+++. .+++..+
T Consensus 192 ~------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 192 G------FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp T------CHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred C------cHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 4 3334444555667789999999999763 3444443
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=236.85 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=143.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAP 558 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g-~~~~~~~kil~iaP 558 (2114)
|++++..++ .||.+|+++|.++++.++.+ .+++++||||||||++|++|+++.+.......+ .....++++||++|
T Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~P 108 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 108 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEEC
Confidence 455555555 58999999999999998876 559999999999999999999998875421100 01123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++|+.|+++.+.++....++++..++|+.....+. ...++|+|+||+++..+.+... ..++.+++||+||||++
T Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 109 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRM 186 (253)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--CChhhCCEEEEeCHHHH
Confidence 999999999999998877789999999987655432 2468999999999844444332 45678999999999998
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
.+ .++..+..++.++. .......|+++||||+|+ ++..+..
T Consensus 187 ~~~~~~~~~~~i~~~~~---~~~~~~~q~l~~SAT~~~--~~~~~~~ 228 (253)
T 1wrb_A 187 LDMGFEPQIRKIIEESN---MPSGINRQTLMFSATFPK--EIQKLAA 228 (253)
T ss_dssp HHTTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCCH--HHHHHHH
T ss_pred HhCchHHHHHHHHhhcc---CCCCCCcEEEEEEEeCCH--HHHHHHH
Confidence 76 57777776665320 001126789999999874 4444444
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-22 Score=232.58 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=143.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+...... ...+.++||++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~~lil~Pt 106 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGLGVLIISPT 106 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCceEEEEeCC
Confidence 567777776 68999999999999998876 5599999999999999999999988653211 1234589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.+++...++++..++|+...... ...+++|+|+||+++ +.+.+.. ...+.++++||+||||++.
T Consensus 107 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 107 RELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV--SFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS--SCCCTTCCEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC--CcccccccEEEEeChHHHh
Confidence 9999999999999888788999999998765443 346789999999998 4444332 1346789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
+ .++..+..++.+ .+...|+++||||+|+ .+..+....
T Consensus 185 ~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~--~~~~~~~~~ 223 (236)
T 2pl3_A 185 DMGFADTMNAVIEN-------LPKKRQTLLFSATQTK--SVKDLARLS 223 (236)
T ss_dssp HTTTHHHHHHHHHT-------SCTTSEEEEEESSCCH--HHHHHHHHS
T ss_pred cCCcHHHHHHHHHh-------CCCCCeEEEEEeeCCH--HHHHHHHHh
Confidence 6 466665555433 3567899999999984 444444433
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=224.36 Aligned_cols=176 Identities=21% Similarity=0.305 Sum_probs=136.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|++..+.....+ +++||++|+++|+.|
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q 86 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKKDN--IQAMVIVPTRELALQ 86 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTSCS--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccCCC--eeEEEEeCcHHHHHH
Confidence 44555666655 7999999999999999875 5599999999999999999999887653233 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+++......+.++..++|+..... .....++|+|+||+++..++.+ ....+.+++++|+||||++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-- 162 (206)
T 1vec_A 87 VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD-- 162 (206)
T ss_dssp HHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhC--
Confidence 9999985433323788999999876542 2234569999999999887765 23457889999999999887643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
+...+..+...++.+.|++++|||+++
T Consensus 163 ----~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 163 ----FVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp ----THHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred ----cHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 223334444455668999999999975
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=230.04 Aligned_cols=181 Identities=19% Similarity=0.290 Sum_probs=132.3
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc----CCCceEEEEEcccHHH
Q 000129 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~----~~~~~k~l~I~Ptr~L 1402 (2114)
.....+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|++|++..+.... ...++++||++|+++|
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L 106 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHH
Confidence 3344555544 7999999999999999875 55999999999999999999998876421 1123489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
+.|+++.++ .+.. .+.++..++|+..... .....++|+|+||+++..++.+ ....++++++||+||||++.+.
T Consensus 107 ~~q~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 107 ALHVEAECS-KYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp HHHHHHHHH-HHCC-TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHHT
T ss_pred HHHHHHHHH-Hhcc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhcc
Confidence 999999998 4553 3788888888766542 2334569999999999887765 3345889999999999988765
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~ 1519 (2114)
. +...+..+...++.+.|++++|||+++. .+++.
T Consensus 183 ~------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 183 E------FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp T------CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHH
T ss_pred c------hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHH
Confidence 3 2233333344456789999999999763 33443
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=229.16 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=140.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.++++ .|++++||||||||++|.+|++..+.....+ .++||++|+++|+.|
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 107 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLENLS--TQILILAPTREIAVQ 107 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEeCCHHHHHH
Confidence 44445555544 7999999999999999875 5699999999999999999999988653333 389999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+++ +... .++++..++|+.... ...+..++|+|+||+++..++++ ....+.+++++|+||||++.+.+ .
T Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-~ 183 (230)
T 2oxc_A 108 IHSVITA-IGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEG-S 183 (230)
T ss_dssp HHHHHHH-HTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTT-S
T ss_pred HHHHHHH-HhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCc-c
Confidence 9999984 5443 478999999987654 34456789999999999888765 33457899999999999987643 1
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~ 1522 (2114)
. ...+..+...++...|++++|||+++. +.+++.
T Consensus 184 ~----~~~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~ 217 (230)
T 2oxc_A 184 F----QEQINWIYSSLPASKQMLAVSATYPEF--LANALT 217 (230)
T ss_dssp S----HHHHHHHHHHSCSSCEEEEEESCCCHH--HHHHHT
T ss_pred h----HHHHHHHHHhCCCCCeEEEEEeccCHH--HHHHHH
Confidence 1 122333344456688999999998743 444443
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=227.65 Aligned_cols=179 Identities=23% Similarity=0.320 Sum_probs=137.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 91 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAPT 91 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCceEEEEECC
Confidence 677777776 58999999999999998876 56999999999999999999999875432 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.+++...++++..++|+...... ....++|+|+||+++ +.+.+.. ..++++++||+||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEcChhHHh
Confidence 9999999999999888889999999998765443 234589999999997 4444432 456789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
+ .++..+..++.. .+...|+++||||+|+ ++..++.
T Consensus 169 ~~~~~~~l~~i~~~-------~~~~~~~i~lSAT~~~--~~~~~~~ 205 (224)
T 1qde_A 169 SSGFKEQIYQIFTL-------LPPTTQVVLLSATMPN--DVLEVTT 205 (224)
T ss_dssp HTTCHHHHHHHHHH-------SCTTCEEEEEESSCCH--HHHHHHH
T ss_pred hhhhHHHHHHHHHh-------CCccCeEEEEEeecCH--HHHHHHH
Confidence 6 465555544432 3568899999999985 3444443
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=227.02 Aligned_cols=181 Identities=22% Similarity=0.324 Sum_probs=136.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|+++.+.....+ .++||++|+++|+.|
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~q 97 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKA--PQALMLAPTRELALQ 97 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTCCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccCCC--ceEEEEECCHHHHHH
Confidence 44455555554 7999999999999999875 5599999999999999999999988663333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.++ .+....++++..++|+.... ...+..++|+|+||+++..++.+ ....+.++++||+||||++.+..
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~--- 171 (224)
T 1qde_A 98 IQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG--- 171 (224)
T ss_dssp HHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT---
T ss_pred HHHHHH-HHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhh---
Confidence 999998 46555688999999987643 33455689999999998877765 24457889999999999887543
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~ 1519 (2114)
+...+..+...++.+.|++++|||+++. .++..
T Consensus 172 ---~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 172 ---FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp ---CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHH
T ss_pred ---hHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHH
Confidence 2233334444456789999999999873 34444
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=226.42 Aligned_cols=175 Identities=21% Similarity=0.304 Sum_probs=136.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|+++.+.....+ .++||++|+++|+.|
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~q 87 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPERAE--VQAVITAPTRELATQ 87 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCcCC--ceEEEEcCcHHHHHH
Confidence 33444555544 7999999999999999986 5599999999999999999999988763223 389999999999999
Q ss_pred HHHHHHHHhcCCC----CcEEEEEcCCcccchh--hc-cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1406 RYRDWEIKFGQGL----GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~----g~~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+++.+++ +.... +.++..++|+...... .+ ..++|+|+||+++..++++ ....+.+++++|+||||.+.+
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 88 IYHETLK-ITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp HHHHHHH-HHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHH
T ss_pred HHHHHHH-HhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhh
Confidence 9999985 44433 6788888988765422 22 3569999999999887765 234578899999999999875
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
.+ +...+..+...++.+.|++++|||+++
T Consensus 165 ~~------~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 165 MG------FITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp TT------CHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hC------hHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 43 234444555566778999999999976
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-22 Score=232.96 Aligned_cols=188 Identities=24% Similarity=0.367 Sum_probs=139.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+... ...++++||++|+++|+.|
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEEEEeCCHHHHHH
Confidence 44555666654 79999999999999999864 599999999999999999999988752 2233489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~- 1480 (2114)
+++.+++ +....+.++..++|+..... .....++|+|+||+++..++++......+.++++||+||||++.++.
T Consensus 114 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 114 IHRELIK-ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp HHHHHHH-HTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC-
T ss_pred HHHHHHH-HhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccc
Confidence 9999994 55555788887777544321 12345699999999999988875444568899999999999987643
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCChhHHHHHhc
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~dla~wl~ 1522 (2114)
+...+.+...++. ..+.+.|+++||||+++ ++.+|+.
T Consensus 193 ~~~~~~~~~i~~~---~~~~~~~~~~~SAT~~~--~v~~~~~ 229 (245)
T 3dkp_A 193 TGFRDQLASIFLA---CTSHKVRRAMFSATFAY--DVEQWCK 229 (245)
T ss_dssp -CHHHHHHHHHHH---CCCTTCEEEEEESSCCH--HHHHHHH
T ss_pred ccHHHHHHHHHHh---cCCCCcEEEEEeccCCH--HHHHHHH
Confidence 2233333322222 22457899999999965 3444443
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=231.95 Aligned_cols=184 Identities=21% Similarity=0.272 Sum_probs=141.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
+.....+.+.. ||..|+++|.++++.++++ ++++++||||||||++|.+|+++.+.....+ +++||++|+++|+.|
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~--~~~lil~Ptr~L~~q 126 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETPQR--LFALVLTPTRELAFQ 126 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSCCS--SCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCCCC--ceEEEEeCCHHHHHH
Confidence 44445555544 7999999999999999985 5599999999999999999999988773333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.++ .+....++++..++|+..... .....++|+|+||+++..++++.. ...+.++++||+||||++.+..
T Consensus 127 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~-- 202 (249)
T 3ber_A 127 ISEQFE-ALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNMD-- 202 (249)
T ss_dssp HHHHHH-HHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHTT--
T ss_pred HHHHHH-HHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CcCccccCEEEEcChhhhhccC--
Confidence 999998 455555888999999876432 233567999999999988776532 2357889999999999887643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+...+..+...++.+.|+++||||+++. .+++.++
T Consensus 203 ----~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 203 ----FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp ----CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 2233444445566789999999999763 3455543
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=230.81 Aligned_cols=179 Identities=21% Similarity=0.330 Sum_probs=136.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++++.+.+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 107 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQALVLAPT 107 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEECc
Confidence 577777766 68999999999999998876 55999999999999999999998875321 24589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
++|+.|+++.++++....++.+..++|+.....+. ...++|+|+||+++ +.+.+.. ..+..+++||+||||+
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKWIKMFVLDEADE 184 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCcccCcEEEECCchH
Confidence 99999999999998877788999999987654332 12389999999997 5554433 3467799999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
+.+ .++..+..++.+ .+...|++++|||+|+ ++.+++.
T Consensus 185 ~~~~~~~~~l~~i~~~-------~~~~~~~i~~SAT~~~--~~~~~~~ 223 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQK-------LNTSIQVVLLSATMPT--DVLEVTK 223 (237)
T ss_dssp HHHTTCHHHHHHHHHH-------SCTTCEEEEECSSCCH--HHHHHHH
T ss_pred hhccCcHHHHHHHHHh-------CCCCCeEEEEEEecCH--HHHHHHH
Confidence 876 465555554433 3567899999999984 3444443
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=228.43 Aligned_cols=176 Identities=16% Similarity=0.290 Sum_probs=132.8
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-------CCCceEEEEEcccHHHHHHHHHH
Q 000129 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1337 ~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-------~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.||..|+|+|.++++.++++ .+++++||||||||++|++|+++.+.... ...++++||++|+++|+.|+++.
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 37999999999999999885 55999999999999999999999887532 11224899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC-CchHH
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLE 1485 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-g~~le 1485 (2114)
++ .+....++++..++|+..... + ....++|+|+||+++..++++. ...+.+++++|+||||++.+.. +..++
T Consensus 120 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQ-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HH-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HH-HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 98 465556788888998876542 2 2245699999999998887763 3457889999999999887653 33333
Q ss_pred HHHHHHHHHHhhcCC--CceEEEEcccCCCh-hHHHHHh
Q 000129 1486 VIVSRMRYIASQVEN--KIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1486 ~i~srl~~i~~~~~~--~~riV~lSATl~n~-~dla~wl 1521 (2114)
.++.++ ..+. +.|++++|||+++. .+++..+
T Consensus 197 ~i~~~~-----~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 197 KIIEES-----NMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp HHHHSS-----CCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred HHHhhc-----cCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 332211 1222 68999999999763 3444433
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=226.76 Aligned_cols=181 Identities=21% Similarity=0.357 Sum_probs=133.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+++++.+.....+ .++||++|+++|+.|
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 113 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEFKE--TQALVLAPTRELAQQ 113 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEECcHHHHHH
Confidence 44555566654 7999999999999999985 5599999999999999999999988653233 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhcc-C-CcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-K-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~-~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+++.++ .++...+..+..+.|+.... ...+. . ++|+|+||+++..++.+ ....+.++++||+||||.+.+..
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~- 189 (237)
T 3bor_A 114 IQKVIL-ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRG- 189 (237)
T ss_dssp HHHHHH-HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT-
T ss_pred HHHHHH-HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccC-
Confidence 999998 56665678888888876543 22222 2 69999999998877765 23457889999999999886543
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHH
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~ 1519 (2114)
+...+..+...++.+.|++++|||+++. .+++.
T Consensus 190 -----~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 190 -----FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp -----CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 1222333444456789999999999753 34444
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=224.12 Aligned_cols=186 Identities=20% Similarity=0.279 Sum_probs=140.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc--CCCceEEEEEcccHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~--~~~~~k~l~I~Ptr~La 1403 (2114)
+.....+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|++|+++.+.... ...+.++||++|+++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~ 110 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHH
Confidence 44455555544 7999999999999999875 55999999999999999999998876421 11233899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
.|+++.++ .++...++++..++|+.... ...+..++|+|+||+++..++.+. ....+.+++++|+||||++.+..
T Consensus 111 ~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~- 187 (236)
T 2pl3_A 111 YQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMG- 187 (236)
T ss_dssp HHHHHHHH-HHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTT-
T ss_pred HHHHHHHH-HHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCC-
Confidence 99999998 56655678999999987654 344567899999999998776652 12357789999999999887543
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+...+..+...++.+.|++++|||+++. .+++..+
T Consensus 188 -----~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 188 -----FADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp -----THHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 2234444555567789999999999763 3555543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=222.47 Aligned_cols=184 Identities=21% Similarity=0.324 Sum_probs=141.8
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|.....+.+.. ||..|+|+|.++++.++++ .++++++|||||||++|.++++..+.... +++++||++|+++|+.
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~ 96 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAF 96 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccC--CCEEEEEEeCCHHHHH
Confidence 345556666654 7999999999999999986 45999999999999999999998876532 2348999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEcCCcccc--hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~-g~~v~~l~G~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
|+++.++ ++.... +.++..++|+.... .+.+. ..+|+|+||+++..++++ ....+.+++++|+||||++.++
T Consensus 97 q~~~~~~-~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 97 QISKEYE-RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHH-HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHH-HHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhcc
Confidence 9999998 455443 78999999987643 22222 359999999999888876 2345789999999999988754
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHH
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEW 1520 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~w 1520 (2114)
.+ +...+..+....+.+.|++++|||+++. .++++.
T Consensus 174 ~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 174 LD-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp HH-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cC-----cHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 21 3344455555567789999999999873 455543
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=220.56 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=136.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|+++++..+..... ...+.+++|++|+
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~lil~P~ 81 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRALVLTPT 81 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEEEEECC
Confidence 567777776 68999999999999998876 559999999999999999999998754221 1234689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|+.|+++.+.+.+.. +++..++|+...... ....++|+|+||+++..+.+.. ...++++++||+||||++.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG--VLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT--SSCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC--CcchhhceEEEEEChhHhh
Confidence 99999999999987654 678888888765432 2357899999999984444332 2457789999999999987
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
+ .++..++.++. ..+...|++++|||+|+
T Consensus 158 ~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 158 SMGFEEEVEALLS-------ATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HTTCHHHHHHHHH-------TSCTTSEEEEECSSCCH
T ss_pred ccchHHHHHHHHH-------hCCccCeEEEEEEecCH
Confidence 6 46666655443 24567899999999985
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=243.90 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=205.1
Q ss_pred CCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
.|+|+|.+++..++ .+..+.|++.+||+|||++++..+...+...... .....++|||+|+ +|+.|+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHHH
Confidence 69999999998775 3455799999999999999988777666543211 0112368999997 899999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChh-h----h------ccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQ-Q----I------EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~-~----~------~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
.+++.+++.. .+.+..+.|+...... . . ..++|+|+|++.+..... ......+++||+||+|.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceec
Confidence 9999988764 4556666665432211 1 0 147899999997532211 122345789999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEccccC-C-hHH---HHHHHhccc---------------------c----
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP-N-YED---VALFLRVNL---------------------E---- 685 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp-n-~~d---va~~l~~~~---------------------~---- 685 (2114)
......... .+.. . ...+.++||||.- | ..+ +-.|+.... .
T Consensus 205 kn~~~~~~~-al~~-------l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~ 275 (644)
T 1z3i_X 205 KNSDNQTYL-ALNS-------M-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275 (644)
T ss_dssp CTTCHHHHH-HHHH-------H-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH
T ss_pred CChhhHHHH-HHHh-------c-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH
Confidence 653222111 1111 2 2346799999932 1 111 111111000 0
Q ss_pred ----------------CceEeecCC------cccccceeEEEeeccCchh---------------------------HHH
Q 000129 686 ----------------KGLFYFDNS------YRPVPLSQQYIGIQVKKPL---------------------------QRF 716 (2114)
Q Consensus 686 ----------------~~~~~f~~~------~rpv~l~~~~~~~~~~~~~---------------------------~~~ 716 (2114)
.+ +..... .-|.... ..+.+...... ..+
T Consensus 276 ~~~~~~~~~~~L~~~l~~-~~lRR~k~~v~~~LP~k~~-~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 276 DRAAGEQKLQELISIVNR-CLIRRTSDILSKYLPVKIE-QVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp HHHHHHHHHHHHHHHHHH-HEECCCGGGGGGTSCCEEE-EEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhHHhHhhhCCCceE-EEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 00 000000 0111111 11111100000 000
Q ss_pred HHhhH-------------------------------------------HHHHHHHHH---hCCCeEEEEecChHHHHHHH
Q 000129 717 QLMND-------------------------------------------LCYEKVVAV---AGKHQVLIFVHSRKETAKTA 750 (2114)
Q Consensus 717 ~~~~~-------------------------------------------~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a 750 (2114)
..+.+ .+...+... ..+.++|||++.+..+..++
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHH
Confidence 00000 011112221 23679999999999998888
Q ss_pred HHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc---eEEEec
Q 000129 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV---QVLVST 827 (2114)
Q Consensus 751 ~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i---~VLVaT 827 (2114)
..|...+. .+..+||+++..+|..+++.|++|.. .+|+||
T Consensus 434 ~~l~~~g~-------------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 434 KLCRNRRY-------------------------------------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp HHHHHHTC-------------------------------------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred HHHHHCCC-------------------------------------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 87765432 35667999999999999999999876 489999
Q ss_pred hHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 828 ~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
.+++.|+|++++++||+ ||++- ++..+.|++||++|.|..+...++.+.....
T Consensus 477 ~a~g~Glnl~~a~~Vi~----~d~~w------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVM----FDPDW------NPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp GGSCTTCCCTTEEEEEE----CSCCS------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred ccccCCcccccCCEEEE----ECCCC------CccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 99999999999999999 55543 6678999999999999776667776766654
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=223.14 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=135.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+.+ .||..|+++|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt 91 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHT 91 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccC--------CCEEEEEEeCC
Confidence 566666666 68999999999999998886 45999999999999999999998864321 23589999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+++++++|+||||+
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECDK 169 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC--CCcccCCEEEEcCHHH
Confidence 999999999999887665 78999999987654432 1346999999999855544432 4578899999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
+.+..+ +...+.++ ....+...|++++|||+|+
T Consensus 170 ~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 170 MLEQLD--MRRDVQEI---FRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp HHSSHH--HHHHHHHH---HHTSCSSSEEEEEESCCCT
T ss_pred HhcccC--cHHHHHHH---HHhCCCcCeEEEEEeecCH
Confidence 875321 22222222 2334568899999999986
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=253.00 Aligned_cols=326 Identities=17% Similarity=0.196 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.+|+|+|.+++..++ ..+.+.|++.+||+|||++++..+...+..... ...+|||+| .+|+.|+.++|
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~--------~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ--------NGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC--------CSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC--------CCCEEEEEC-chHHHHHHHHH
Confidence 379999999998554 456689999999999999987776655443321 225899999 78999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh---------------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ---------------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---------------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
.+++. ++++..++|+...... .....+|+|+|++.+..-... .....+++|||||||.+
T Consensus 306 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 306 EKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH----HHTSEEEEEEETTGGGG
T ss_pred HHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH----HhcCCcceeehhhhhhh
Confidence 88764 5678888887543221 123578999999976221111 11124689999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceE------eecCC-------------
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLF------YFDNS------------- 694 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp--n~~dva~~l~~~~~~~~~------~f~~~------------- 694 (2114)
...... +... +... ...+.++||||.- +..++...+..-.. +.+ .+...
T Consensus 380 kn~~s~-~~~~-------l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p-~~~~~~~~~~~~~~~~~~~~~~~~L~~ 449 (800)
T 3mwy_W 380 KNAESS-LYES-------LNSF-KVANRMLITGTPLQNNIKELAALVNFLMP-GRFTIDQEIDFENQDEEQEEYIHDLHR 449 (800)
T ss_dssp CCSSSH-HHHH-------HTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCS-CCC---------CCTTHHHHHHHHHHH
T ss_pred cCchhH-HHHH-------HHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCc-cccCchhhhcccccchhHHHHHHHHHH
Confidence 643221 1111 1222 2345689999941 34444333321100 000 00000
Q ss_pred -ccc-------------ccc-eeEEEeeccCchhHH---------------------------HHHhh------------
Q 000129 695 -YRP-------------VPL-SQQYIGIQVKKPLQR---------------------------FQLMN------------ 720 (2114)
Q Consensus 695 -~rp-------------v~l-~~~~~~~~~~~~~~~---------------------------~~~~~------------ 720 (2114)
.+| .|- ....+.+........ +..+.
T Consensus 450 ~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~ 529 (800)
T 3mwy_W 450 RIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNA 529 (800)
T ss_dssp TTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSH
T ss_pred HHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcch
Confidence 000 010 111111111000000 00000
Q ss_pred -----------------------------HHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccC
Q 000129 721 -----------------------------DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED 770 (2114)
Q Consensus 721 -----------------------------~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~ 770 (2114)
..+.+.+.... .++++||||..+..+..++..|...+.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~------------ 597 (800)
T 3mwy_W 530 EERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI------------ 597 (800)
T ss_dssp HHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC------------
Confidence 01111122222 367999999999998888888876542
Q ss_pred chhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCc---eEEEechHhhhhcCCCceEEEEecce
Q 000129 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV---QVLVSTATLAWGVNLPAHTVIIKGTQ 847 (2114)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i---~VLVaT~tla~GVdlP~v~vVI~~~~ 847 (2114)
.+..+||+++..+|..+++.|++|.. .+|+||.+++.|+|+|++++||.++.
T Consensus 598 -------------------------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 598 -------------------------NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS 652 (800)
T ss_dssp -------------------------CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC
T ss_pred -------------------------CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecC
Confidence 35667999999999999999998654 49999999999999999999999554
Q ss_pred eccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 848 ~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
++ ++..+.|++||++|.|..+...++.+++....
T Consensus 653 ~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 653 DW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred CC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 44 45679999999999998777888877776543
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=251.89 Aligned_cols=326 Identities=14% Similarity=0.146 Sum_probs=210.8
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
..++|+|.+++..++ ..+.+.|++.+||+|||+++...+...+......+ .+|||+| .+|+.|+.+++. ++..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~--~~LIV~P-~sll~qW~~E~~-~~~p 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG--PHIIVVP-LSTMPAWLDTFE-KWAP 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS--CEEEECC-TTTHHHHHHHHH-HHST
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC--CEEEEEC-chHHHHHHHHHH-HHCC
Confidence 379999999998654 45678999999999999998666655544433344 7899999 788999999888 4543
Q ss_pred CCCcEEEEEcCCcccch---------------hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1417 GLGMRVVELTGETAMDL---------------KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~---------------~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
+.++..++|...... ......+|+|+|++.+....... .-..+++||+||||++.+...
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSS
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchh
Confidence 577888888654321 12235589999999875432221 123679999999999965432
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCC--hhHHH---HHhcCCCCc---eeecCCC--------------CC---
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLG---EWIGATSHG---LFNFPPG--------------VR--- 1536 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n--~~dla---~wl~~~~~~---~~~f~~~--------------~r--- 1536 (2114)
.. ...+ ..+ ...+.++||||+-. ..++. .|+.-.... .+.+... .+
T Consensus 385 ~~----~~~l----~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 385 SL----YESL----NSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp HH----HHHH----TTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred HH----HHHH----HHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 11 1111 222 23456889999832 33333 333211000 0000000 00
Q ss_pred ----------ccCc-EEEEecccccch-----HHHHHh------------------------------------------
Q 000129 1537 ----------PVPL-EIHIQGVDITNF-----EARMQA------------------------------------------ 1558 (2114)
Q Consensus 1537 ----------pv~l-~~~~~~~~~~~~-----~~~~~~------------------------------------------ 1558 (2114)
..|- ...+........ ......
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 0111 111111110000 000000
Q ss_pred -----------------cCH---HHHHHH-HHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccch
Q 000129 1559 -----------------MTK---PTFTAI-VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2114)
Q Consensus 1559 -----------------~~~---~~~~~i-~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2114)
... .....+ ......+.++|||+..+..+..++..|.
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~---------------------- 593 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS---------------------- 593 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH----------------------
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH----------------------
Confidence 000 001111 2222456789999999988777665542
Q ss_pred hhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc---eEEEecCccccccCCCCcEEEEEeeeEecCCcCc
Q 000129 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI---KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2114)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i---~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~ 1694 (2114)
..+..+..+||+++..+|..+++.|++|.. .+|++|.+++.|+|+++..+|| ++
T Consensus 594 -------------~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI----------~~ 650 (800)
T 3mwy_W 594 -------------IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV----------IF 650 (800)
T ss_dssp -------------HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE----------ES
T ss_pred -------------hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE----------Ee
Confidence 124568899999999999999999998655 4999999999999999999999 78
Q ss_pred CCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1695 ~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+.+.++..+.|++||++|.|......++.++....
T Consensus 651 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 651 DSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp SCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred cCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999999999998778888888887764
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=216.22 Aligned_cols=183 Identities=21% Similarity=0.283 Sum_probs=137.6
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHH
Q 000129 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q 1405 (2114)
.....+.+.. ||..|+|+|.++++.++++ .++++++|||||||++|.+++++.+.... ...+++++|++|+++|+.|
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q 87 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQ 87 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHH
Confidence 3344455544 7999999999999999885 55999999999999999999999876421 1223489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
+++.+++ +.. +.++..++|+.... ......++|+|+||+++..++++ ....+.+++++|+||||++.+..
T Consensus 88 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~-- 160 (207)
T 2gxq_A 88 VASELTA-VAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMG-- 160 (207)
T ss_dssp HHHHHHH-HCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTT--
T ss_pred HHHHHHH-Hhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccc--
Confidence 9999995 433 36788888876643 22335679999999999887765 34467889999999999886543
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~ 1522 (2114)
+...+..+....+.+.|++++|||+++ ..++++++.
T Consensus 161 ----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 161 ----FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp ----CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred ----hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 222333344455678999999999986 345665543
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=230.01 Aligned_cols=322 Identities=16% Similarity=0.141 Sum_probs=210.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|-..--.+..| + |....||+|||++|.+|++-.... +. .+.+++|++.||.+-++.+. .+...+|+
T Consensus 75 r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~lnAL~---G~--~vhVvT~ndyLA~rdae~m~-~l~~~Lgl 145 (822)
T 3jux_A 75 RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLNALI---GK--GVHLVTVNDYLARRDALWMG-PVYLFLGL 145 (822)
T ss_dssp CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHHHhc---CC--ceEEEeccHHHHHhHHHHHH-HHHHHhCC
Confidence 5777777776666543 3 889999999999999998744333 33 68899999999999888777 45556799
Q ss_pred EEEEEcCC--------------------------------------------------cccc-hhhccCCcEEEEChhhH
Q 000129 1421 RVVELTGE--------------------------------------------------TAMD-LKLLEKGQIIISTPEKW 1449 (2114)
Q Consensus 1421 ~v~~l~G~--------------------------------------------------~~~~-~~~l~~~~IIV~TPe~l 1449 (2114)
+|++++.+ .+.. .+..-.+||+++|..-|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 99998872 1111 22223469999999886
Q ss_pred H-HHHhh-hc---ccccccceeEEEeccccccc-C-CC------Cch--HHHHHHHHHHHHhhc----------------
Q 000129 1450 D-ALSRR-WK---QRKYVQQVSLFIIDELHLIG-G-QG------GPV--LEVIVSRMRYIASQV---------------- 1498 (2114)
Q Consensus 1450 ~-~l~r~-~~---~~~~l~~v~liIiDEaH~l~-~-~~------g~~--le~i~srl~~i~~~~---------------- 1498 (2114)
- ..+|. .. .........+.||||+|.++ + .+ |+. -..+..++..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 2 23443 11 12234568999999999542 1 11 110 000111111110000
Q ss_pred ----------------------------------------CC--------------------------------------
Q 000129 1499 ----------------------------------------EN-------------------------------------- 1500 (2114)
Q Consensus 1499 ----------------------------------------~~-------------------------------------- 1500 (2114)
..
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 00
Q ss_pred -----------------------CceEEEEcccCCCh-hHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHH
Q 000129 1501 -----------------------KIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2114)
Q Consensus 1501 -----------------------~~riV~lSATl~n~-~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 1556 (2114)
=.++.|||+|+... .++.+..+.. ++.. |..+|..-... ............
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~I-Ptnkp~~R~d~-~d~vy~t~~eK~ 460 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVI-PTHKPMIRKDH-DDLVFRTQKEKY 460 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEEC-CCSSCCCCEEC-CCEEESSHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEE-CCCCCcceeec-CcEEEecHHHHH
Confidence 13488999998663 3555555543 3333 44455322211 000001111111
Q ss_pred HhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccce
Q 000129 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2114)
Q Consensus 1557 ~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV 1636 (2114)
..+...+......+.|+||||+|++.|+.++..|.. .+..+
T Consensus 461 ----~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~-----------------------------------~Gi~~ 501 (822)
T 3jux_A 461 ----EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK-----------------------------------KGIPH 501 (822)
T ss_dssp ----HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT-----------------------------------TTCCC
T ss_pred ----HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------CCCCE
Confidence 122233333324678999999999999999877732 23347
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCC--------CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHc
Q 000129 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2114)
Q Consensus 1637 ~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip--------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2114)
..+||+....+|..+...++.| .|+|||++++||+|++ +..+|| +++.|.+...|.||+|
T Consensus 502 ~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI----------nte~Pes~r~y~qriG 569 (822)
T 3jux_A 502 QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII----------GTERHESRRIDNQLRG 569 (822)
T ss_dssp EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE----------ESSCCSSHHHHHHHHT
T ss_pred EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE----------ecCCCCCHHHHHHhhC
Confidence 8899998777777777777776 6999999999999998 667899 8999999999999999
Q ss_pred ccCCCCCCCceEEEEEeecCc
Q 000129 1709 HASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1709 RAGR~~~~~~G~~iil~~~~~ 1729 (2114)
||||. +.+|.++.|++..+
T Consensus 570 RTGRq--G~~G~a~~fvsleD 588 (822)
T 3jux_A 570 RAGRQ--GDPGESIFFLSLED 588 (822)
T ss_dssp TSSCS--SCCCEEEEEEETTS
T ss_pred ccccC--CCCeeEEEEechhH
Confidence 99998 78999999998776
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=239.92 Aligned_cols=329 Identities=15% Similarity=0.148 Sum_probs=207.7
Q ss_pred CCCCHHHHHHHHHHH--------cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCC--CceEEEEEcccHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET--GVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il--------~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~--~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
..++|+|.+++..++ .++.+.|++.+||+|||+.+...+...+...... ...++|||+|+ +|+.|+.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 379999999999876 3456799999999999999977766655542111 11268999997 899999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccch-----hhc------cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~~-----~~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~ 1478 (2114)
+.+.++. .+.+..+.|+..... ..+ ...+|+|+|++.+...... ..-..+++||+||+|++.+
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH----hhcCCccEEEEECceecCC
Confidence 9854433 355666666543321 111 1368999999986543221 1234678999999999975
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCChh--------------------HHHHHhcCC------CC------
Q 000129 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK--------------------DLGEWIGAT------SH------ 1526 (2114)
Q Consensus 1479 ~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~~--------------------dla~wl~~~------~~------ 1526 (2114)
.....+ ..++.+ ...+.++||||+-... .+.+++... ..
T Consensus 207 ~~~~~~----~al~~l-----~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 207 SDNQTY----LALNSM-----NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp TCHHHH----HHHHHH-----CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred hhhHHH----HHHHhc-----ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 432111 112222 2457799999974321 122222100 00
Q ss_pred ----------------ceeecC----CCCCccCcEEEE-eccccc---chHHH-------------------HHh-----
Q 000129 1527 ----------------GLFNFP----PGVRPVPLEIHI-QGVDIT---NFEAR-------------------MQA----- 1558 (2114)
Q Consensus 1527 ----------------~~~~f~----~~~rpv~l~~~~-~~~~~~---~~~~~-------------------~~~----- 1558 (2114)
.++.-. ...-|...+..+ ...... .|... +..
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 000000 000111111111 000000 00000 000
Q ss_pred ---------------------------------------cC-H-HHHHHHHHHh--cCCCCEEEEeCChHHHHHHHHHHH
Q 000129 1559 ---------------------------------------MT-K-PTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLM 1595 (2114)
Q Consensus 1559 ---------------------------------------~~-~-~~~~~i~~~l--~~~~~~LVFv~sr~~a~~la~~L~ 1595 (2114)
.. + .....++..+ ..+.++|||++.+..+..++..|.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 00 0 0111222221 246789999999988876665442
Q ss_pred HhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEecCccccc
Q 000129 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCWG 1672 (2114)
Q Consensus 1596 ~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~---VLVaT~~la~G 1672 (2114)
..+..+..+||+++..+|..+++.|++|... +|++|.+++.|
T Consensus 438 -----------------------------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~G 482 (644)
T 1z3i_X 438 -----------------------------------NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 482 (644)
T ss_dssp -----------------------------------HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTT
T ss_pred -----------------------------------HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCC
Confidence 1245678899999999999999999998764 89999999999
Q ss_pred cCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1673 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1673 vdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+|++++.+|| +++.|.++..+.|++||++|.|......++.++....
T Consensus 483 lnl~~a~~Vi----------~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 483 LNLIGANRLV----------MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CCCTTEEEEE----------ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccccCCEEE----------EECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 9999999999 8999999999999999999998777777887777653
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=239.20 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=140.9
Q ss_pred ccceeEEEecccccccCCCCchHHHHHHHHHHHHhh------------------cCCCceEEEEcccCCChhHHHHHhcC
Q 000129 1462 VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGA 1523 (2114)
Q Consensus 1462 l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~------------------~~~~~riV~lSATl~n~~dla~wl~~ 1523 (2114)
+.+-.+||+||+|.+.+..+..+.....+...+... .+...+++++|||+++.. +.. .
T Consensus 323 l~~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~- 398 (664)
T 1c4o_A 323 FPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFE-LAH--S- 398 (664)
T ss_dssp SCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHH-HHH--C-
T ss_pred HhhccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHH-HHh--h-
Confidence 344569999999987643333444444333322210 013578999999986432 221 0
Q ss_pred CCCceeec--CCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccC
Q 000129 1524 TSHGLFNF--PPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2114)
Q Consensus 1524 ~~~~~~~f--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~ 1601 (2114)
..+... .+.....|. +.+..+. ... ......+......+.++||||+|++.|+.++..|..
T Consensus 399 --~~~~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~----- 461 (664)
T 1c4o_A 399 --GRVVEQIIRPTGLLDPL-VRVKPTE-----NQI----LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE----- 461 (664)
T ss_dssp --SEEEEECSCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH-----
T ss_pred --hCeeeeeeccCCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh-----
Confidence 111111 111111221 2222221 111 122344445545788999999999999999876632
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEE
Q 000129 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVV 1681 (2114)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vV 1681 (2114)
.+..+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|
T Consensus 462 ------------------------------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lV 511 (664)
T 1c4o_A 462 ------------------------------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLV 511 (664)
T ss_dssp ------------------------------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEE
T ss_pred ------------------------------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEE
Confidence 13457889999999999999999999999999999999999999999988
Q ss_pred EEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1682 VMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1682 I~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
| .|+.. .+..|.+..+|+||+|||||. ..|.|++++...+....+
T Consensus 512 I----~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~~~ 556 (664)
T 1c4o_A 512 A----ILDAD-KEGFLRSERSLIQTIGRAARN---ARGEVWLYADRVSEAMQR 556 (664)
T ss_dssp E----ETTTT-SCSGGGSHHHHHHHHGGGTTS---TTCEEEEECSSCCHHHHH
T ss_pred E----EeCCc-ccCCCCCHHHHHHHHCccCcC---CCCEEEEEEcCCCHHHHH
Confidence 8 12111 122378999999999999996 489999999887655443
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=240.66 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=99.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+|++.++.++..|.+.+. .+.++||+|++.+|..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------------------------------------RARYLHHELDAFKRQA 480 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCCHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CceeecCCCCHHHHHH
Confidence 467999999999999999999987542 3567799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||.+ .|.++++++..+.
T Consensus 481 ~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~-p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNA---RGEVWLYADRVSE 552 (664)
T ss_dssp HHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSG-GGSHHHHHHHHGGGTTST---TCEEEEECSSCCH
T ss_pred HHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCC-CCCHHHHHHHHCccCcCC---CCEEEEEEcCCCH
Confidence 999999999999999999999999999999998 55432111 338889999999999974 7999999987665
Q ss_pred HHH
Q 000129 892 RYY 894 (2114)
Q Consensus 892 ~~~ 894 (2114)
...
T Consensus 553 ~~~ 555 (664)
T 1c4o_A 553 AMQ 555 (664)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-18 Score=217.88 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|+ .|+++|..+++.++.++ |.+|+||+|||++|.+|++.....+ ..+++++||+.||.|.++.+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~G-----------~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALTG-----------KGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTTC-----------SCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHhC-----------CCEEEEeCCHHHHHHHHHHH
Confidence 478 89999999999988775 9999999999999999996544322 26999999999999999999
Q ss_pred HHhhccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhcc---CCCcccc---cccEEEEecccccc
Q 000129 571 SNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQ---LVKLLIIDEIHLLH 636 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~---~~~~~l~---~v~liIiDEaH~l~ 636 (2114)
..++..+|++|+.++|+.+...+ ....++|+|+||+++ |.+..+. .....++ .++++||||+|.++
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999999998764332 235789999999996 6666653 1224566 89999999999875
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-18 Score=225.08 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=139.3
Q ss_pred eeEEEecccccccCCCCchHHHHHHHHHHHHhh------------------cCCCceEEEEcccCCChhHHHHHhcCCCC
Q 000129 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGATSH 1526 (2114)
Q Consensus 1465 v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~------------------~~~~~riV~lSATl~n~~dla~wl~~~~~ 1526 (2114)
-.+||+||+|.+.+..+..++.+.++....... .+...+++++|||++... +.. ....
T Consensus 332 ~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~~~~- 407 (661)
T 2d7d_A 332 DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE-IEH--TDEM- 407 (661)
T ss_dssp SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH-HHH--CSSC-
T ss_pred CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhH-HHh--hhCe-
Confidence 358999999987543333333333333222111 113578999999985432 211 1110
Q ss_pred ceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccc
Q 000129 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2114)
Q Consensus 1527 ~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~ 1606 (2114)
.-....+.....|. +.+..+. ... ...+..+......+.++||||+|++.|+.++..|..
T Consensus 408 ~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~---------- 467 (661)
T 2d7d_A 408 VEQIIRPTGLLDPL-IDVRPIE-----GQI----DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE---------- 467 (661)
T ss_dssp EEECCCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH----------
T ss_pred eeeeecccCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh----------
Confidence 01111121122222 2222221 111 122344555545778999999999999999876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeee
Q 000129 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2114)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~ 1686 (2114)
.+..+.++||++++.+|..+++.|++|.++|||||+++++|+|+|++.+||
T Consensus 468 -------------------------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi---- 518 (661)
T 2d7d_A 468 -------------------------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA---- 518 (661)
T ss_dssp -------------------------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE----
T ss_pred -------------------------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE----
Confidence 134578899999999999999999999999999999999999999999888
Q ss_pred EecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHHHH
Q 000129 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2114)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~ 1734 (2114)
.|+.. .+..|.+..+|+||+|||||. ..|.|++++...+....+
T Consensus 519 ~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 519 ILDAD-KEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp ETTTT-CCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHHHHH
T ss_pred EeCcc-cccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHHHHH
Confidence 11111 122388999999999999995 689999999887655433
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=220.49 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=101.0
Q ss_pred HHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCC
Q 000129 727 VVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2114)
Q Consensus 727 i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~ 805 (2114)
+.... .+.++||||+|++.++.++..|.+.+. .+.++||+|+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~ 480 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGI-------------------------------------KVNYLHSEIK 480 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CeEEEeCCCC
Confidence 44433 467999999999999999999987542 2566799999
Q ss_pred HHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 000129 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2114)
Q Consensus 806 ~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2114)
+.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||. ..|.++++
T Consensus 481 ~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~-p~s~~~~iQr~GRagR~---~~G~~i~~ 552 (661)
T 2d7d_A 481 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---AEGRVIMY 552 (661)
T ss_dssp HHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTT-TTSHHHHHHHHHTTTTS---TTCEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccC-CCCHHHHHHHhCcccCC---CCCEEEEE
Confidence 999999999999999999999999999999999999998 55432111 23889999999999996 57999999
Q ss_pred cCCCcHHH
Q 000129 886 TGHSELRY 893 (2114)
Q Consensus 886 ~~~~e~~~ 893 (2114)
++..+...
T Consensus 553 ~~~~~~~~ 560 (661)
T 2d7d_A 553 ADKITKSM 560 (661)
T ss_dssp CSSCCHHH
T ss_pred EeCCCHHH
Confidence 98866543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-16 Score=202.63 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=105.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
|+ .|+++|..+++.++.++ +..++||||||++|.+|++..... +. .+++++||++||.|.+..+. .+...
T Consensus 77 G~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~---G~--qv~VvTPTreLA~Qdae~m~-~l~~~ 146 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALT---GK--GVHVVTVNDYLARRDAEWMG-PVYRG 146 (997)
T ss_dssp CC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTT---CS--CCEEEESSHHHHHHHHHHHH-HHHHT
T ss_pred CC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHh---CC--CEEEEeCCHHHHHHHHHHHH-HHHHh
Confidence 58 89999999999998865 899999999999999999644333 23 78999999999999999888 55566
Q ss_pred CCcEEEEEcCCcccchh-hccCCcEEEEChhhH-HHHHhhhc----cccccc---ceeEEEeccccccc
Q 000129 1418 LGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQ---QVSLFIIDELHLIG 1477 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~---~v~liIiDEaH~l~ 1477 (2114)
+|++|+.++|+.+...+ ....++|+|+||+.+ ..+++... ....++ ++.++|+||+|.++
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 79999999998876533 334679999999998 56666532 123466 89999999999765
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=209.99 Aligned_cols=127 Identities=24% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 491 KGMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
.|| +++|+|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 467 8999999987643 4566789999999999999999998653 138999999999999999
Q ss_pred HHHHHhhccCCcEEEEEeCCCcc--------------------------------------------------Chhhhcc
Q 000129 568 GNLSNRLQMYDVKVRELSGDQTL--------------------------------------------------TRQQIEE 597 (2114)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~--------------------------------------------------~~~~~~~ 597 (2114)
+.+.++ ++++..+.|.... .+.....
T Consensus 69 ~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ 144 (540)
T 2vl7_A 69 KNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKD 144 (540)
T ss_dssp HHHGGG----TCCEEEC---------------------------------------------------------CTTGGG
T ss_pred HHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhc
Confidence 887662 4555555542210 0111356
Q ss_pred ceEEEcCHhHH-HHHHhcc-C---CCcccccccEEEEecccccc
Q 000129 598 TQIIVTTPEKW-DIITRKS-G---DRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 598 ~~IiV~TPek~-d~l~r~~-~---~~~~l~~v~liIiDEaH~l~ 636 (2114)
++|||+|+..+ +...++. . ....+....++||||||.|.
T Consensus 145 adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 145 KDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 79999999986 4344332 1 01134567899999999983
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=191.11 Aligned_cols=169 Identities=26% Similarity=0.327 Sum_probs=114.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH-HHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE-VVGNL 570 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q-~~~~~ 570 (2114)
+...|+++|.++++.++.+ .+++++||||+|||++|++++++.+...... ..+.++||++|+++|+.| +.+.+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTH
T ss_pred CCCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHH
Confidence 3458999999999998875 5699999999999999999999877654211 123479999999999999 66667
Q ss_pred HHhhccCCcEEEEEeCCCccCh---hhhccceEEEcCHhHHHHHHhccCC----CcccccccEEEEecccccccCCchhH
Q 000129 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGD----RTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2114)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPek~d~l~r~~~~----~~~l~~v~liIiDEaH~l~d~rg~~l 643 (2114)
.++.. .++++..++|+..... .....++|+|+||+++......... ...+..+++|||||||++.+. ..+
T Consensus 104 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~ 180 (216)
T 3b6e_A 104 QPFLK-KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVY 180 (216)
T ss_dssp HHHHT-TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CH
T ss_pred HHHhc-cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcH
Confidence 66544 3788999999876543 2235789999999998544443321 135678999999999998642 234
Q ss_pred HHHHHHHHHHH-hhc---------cccccEEEEccc
Q 000129 644 ESIVARTVRQI-ETT---------KEHIRLVGLSAT 669 (2114)
Q Consensus 644 e~iv~rl~~~~-~~~---------~~~~riv~lSAT 669 (2114)
..++.+++... ... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 44444433221 111 157899999998
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=178.19 Aligned_cols=144 Identities=22% Similarity=0.395 Sum_probs=115.2
Q ss_pred cccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000129 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2114)
Q Consensus 697 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~ 776 (2114)
+..+.+.++.+... .++..+.++ +....++++||||++++.+..++..|...+
T Consensus 7 ~~~i~~~~~~~~~~---~K~~~L~~l-----l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------- 59 (163)
T 2hjv_A 7 TRNIEHAVIQVREE---NKFSLLKDV-----LMTENPDSCIIFCRTKEHVNQLTDELDDLG------------------- 59 (163)
T ss_dssp CCCEEEEEEECCGG---GHHHHHHHH-----HHHHCCSSEEEECSSHHHHHHHHHHHHHTT-------------------
T ss_pred cccceEEEEECChH---HHHHHHHHH-----HHhcCCCcEEEEECCHHHHHHHHHHHHHcC-------------------
Confidence 33466666655432 233333322 233457799999999999999999887642
Q ss_pred HHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcc
Q 000129 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2114)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2114)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++.
T Consensus 60 ------------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~p~--- 114 (163)
T 2hjv_A 60 ------------------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDLPL--- 114 (163)
T ss_dssp ------------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSCCS---
T ss_pred ------------------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCCCC---
Confidence 34778899999999999999999999999999999999999999999999 66654
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHHh
Q 000129 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2114)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~l 897 (2114)
+..+|+||+|||||.| ..|.++++++..+..++.++
T Consensus 115 ---~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 115 ---EKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp ---SHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHHH
T ss_pred ---CHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHHH
Confidence 7889999999999987 67999999998887766654
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=182.33 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=102.7
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHH
Q 000129 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2114)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R 809 (2114)
....+++||||++++.+..++..|...+ .++..+||+|++.+|
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDG-------------------------------------HQVSLLSGELTVEQR 73 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECSSCCHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHH
Confidence 3456799999999999999998886532 357889999999999
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
..+++.|++|.++|||||+++++|+|+|++++||+++.|+++. .+.+..+|+||+|||||.| ..|.++++++..
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~----~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 147 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG----EEPDYETYLHRIGRTGRFG--KKGLAFNMIEVD 147 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--C----CSCCHHHHHHHHCBC------CCEEEEEEECGG
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcc----ccCCHHHHHHHhcccccCC--CCceEEEEEccc
Confidence 9999999999999999999999999999999999955554432 3468999999999999987 679999999988
Q ss_pred cHHHHHHh
Q 000129 890 ELRYYLSL 897 (2114)
Q Consensus 890 e~~~~~~l 897 (2114)
+...+..+
T Consensus 148 ~~~~~~~i 155 (175)
T 2rb4_A 148 ELPSLMKI 155 (175)
T ss_dssp GHHHHHHH
T ss_pred hHHHHHHH
Confidence 87665543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=186.03 Aligned_cols=120 Identities=25% Similarity=0.409 Sum_probs=104.2
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 27 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDLSQGE 69 (212)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHHT-------------------------------------CCEEEECSSSCHHH
T ss_pred HhCCCCeEEEEeCCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457899999999999999999887643 34678899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||.| ..|.|+++++.
T Consensus 70 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~l~~~ 137 (212)
T 3eaq_A 70 RERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRLPD------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 137 (212)
T ss_dssp HHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSCCS------SHHHHHHHHTTBCCCC----BEEEEEECG
T ss_pred HHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCCCc------CHHHHHHHhcccCCCC--CCCeEEEEEch
Confidence 999999999999999999999999999999999999 67664 7889999999999987 67999999998
Q ss_pred CcHHHHHHh
Q 000129 889 SELRYYLSL 897 (2114)
Q Consensus 889 ~e~~~~~~l 897 (2114)
.+...+..+
T Consensus 138 ~~~~~~~~i 146 (212)
T 3eaq_A 138 RERRDVEAL 146 (212)
T ss_dssp GGHHHHHHH
T ss_pred hHHHHHHHH
Confidence 886665543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=190.41 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|.++++.+..+ ++++++||||||||+++.+++++..........++++|++|+++|+.|+++.+...++...|.
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 5789999999999874 569999999999999999999887765333234589999999999999999998777655555
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
.++.-..... ......++|+|+||+++..+++. .++++++||+||||.+ +.........++.+.... +
T Consensus 140 ~~g~~~~~~~--~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~----~~~~~~~~~~l~~i~~~~-~ 207 (235)
T 3llm_A 140 SCGYSVRFES--ILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER----DINTDFLLVVLRDVVQAY-P 207 (235)
T ss_dssp SEEEEETTEE--ECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC----CHHHHHHHHHHHHHHHHC-T
T ss_pred eEEEeechhh--ccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC----CcchHHHHHHHHHHHhhC-C
Confidence 5554222111 11114568999999998877764 3889999999999963 233334445566655543 5
Q ss_pred CceEEEEcccCCChhHHHHHhcCCC
Q 000129 1501 KIRIVALSTSLANAKDLGEWIGATS 1525 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~dla~wl~~~~ 1525 (2114)
+.|++++|||+++.. +++|++..+
T Consensus 208 ~~~~il~SAT~~~~~-~~~~~~~~p 231 (235)
T 3llm_A 208 EVRIVLMSATIDTSM-FCEYFFNCP 231 (235)
T ss_dssp TSEEEEEECSSCCHH-HHHHTTSCC
T ss_pred CCeEEEEecCCCHHH-HHHHcCCCC
Confidence 789999999997665 999997653
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=198.81 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|+++|.++++.++.+ .+.+++||||+|||+++++++...+..+ ..+++|++|+++|+.|+.+++.+++
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 7999999999998887 4588899999999999988888776543 2389999999999999999999887
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~ 654 (2114)
...+..+..++|+...........+|+|+||+. +.+.. ...+.++++||+||||++. ++.++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~---l~~~~--~~~~~~~~~vIiDEaH~~~---~~~~~~il~------ 247 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT---VVKQP--KEWFSQFGMMMNDECHLAT---GKSISSIIS------ 247 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHH---HTTSC--GGGGGGEEEEEEETGGGCC---HHHHHHHTT------
T ss_pred ccccceEEEEeCCCcchhhhccCCcEEEEchHH---HHhhH--HHHHhhCCEEEEECCccCC---cccHHHHHH------
Confidence 655677888888766544444678999999985 33332 2457789999999999986 334444433
Q ss_pred hhccccccEEEEccccCCh
Q 000129 655 ETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 655 ~~~~~~~riv~lSATlpn~ 673 (2114)
......++++||||+++.
T Consensus 248 -~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 248 -GLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp -TCTTCCEEEEECSSCCTT
T ss_pred -HhhcCCeEEEEeCCCCCc
Confidence 234578999999998864
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=189.30 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=114.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHH-HHHHHHHHhcC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKE-RYRDWEIKFGQ 1416 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q-~~~~~~~~f~~ 1416 (2114)
...|+|+|.++++.++++ .++++++|||+|||++|.+++++.+.... ...+.++||++|+++|+.| +.+.+. .+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HHHT
T ss_pred CCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HHhc
Confidence 458999999999999874 56999999999999999999998776532 1112389999999999999 555565 5554
Q ss_pred CCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcc----cccccceeEEEecccccccCCCCchHHHHHH
Q 000129 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQ----RKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2114)
Q Consensus 1417 ~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~----~~~l~~v~liIiDEaH~l~~~~g~~le~i~s 1489 (2114)
. +.++..++|+..... .....++|+|+||+++...+..... ...+.++++||+||||++.+. ..++.++.
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~~~~~~ 185 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVYNNIMR 185 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcHHHHHH
Confidence 3 678888888765442 2334679999999999887776432 145788999999999998632 34444444
Q ss_pred HHHHHH-hh---------cCCCceEEEEccc
Q 000129 1490 RMRYIA-SQ---------VENKIRIVALSTS 1510 (2114)
Q Consensus 1490 rl~~i~-~~---------~~~~~riV~lSAT 1510 (2114)
++.... .. .....++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332211 11 1157899999998
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=182.10 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=109.8
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||+++..+..++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDLSQGERERV 73 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 4678999999999999988866632 24578999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+..
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi----------~~~~p~~~~~~~qr~GR~gR~--g~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRLPDRAEAYQHRSGRTGRA--GRGGRVVLLYGPRERR 141 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEE----------ESSCCSSHHHHHHHHTTBCCC--C--BEEEEEECGGGHH
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEE----------ECCCCcCHHHHHHHhcccCCC--CCCCeEEEEEchhHHH
Confidence 9999999999999999999999999999999 889999999999999999998 5789999999999888
Q ss_pred HHHHHHHhccC
Q 000129 1732 YYKKFLRLTQN 1742 (2114)
Q Consensus 1732 ~~~~~lRl~~n 1742 (2114)
.++.+.+....
T Consensus 142 ~~~~i~~~~~~ 152 (212)
T 3eaq_A 142 DVEALERAVGR 152 (212)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhcC
Confidence 88877766554
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=180.45 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=100.8
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
.....+++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQN-------------------------------------FPAIAIHRGMPQEE 69 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457799999999999999999887642 34778899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ ||++. +..+|+||+|||||.| ..|.++++++.
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~p~------~~~~~~qr~GR~~R~g--~~g~~~~~~~~ 137 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSD 137 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------SHHHHHHHHHHHTGGG--CCCEEEEEECS
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECCCC------CHHHHHHHhcccccCC--CCcEEEEEEcC
Confidence 999999999999999999999999999999999999 66664 7889999999999987 67999999987
Q ss_pred CcH
Q 000129 889 SEL 891 (2114)
Q Consensus 889 ~e~ 891 (2114)
.+.
T Consensus 138 ~~~ 140 (172)
T 1t5i_A 138 END 140 (172)
T ss_dssp HHH
T ss_pred hhH
Confidence 643
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=195.30 Aligned_cols=199 Identities=22% Similarity=0.270 Sum_probs=135.7
Q ss_pred cccccccCCcccccccccCCC-------CCcccccCcceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCCHH
Q 000129 427 DTLAFQQGGLFMANRKCDLPE-------GSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRV 499 (2114)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~lp~-------~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~i 499 (2114)
..++|++|.++++ .++.+|. ++++...+.|+++. +......++..+.......+| .+.....|+++
T Consensus 25 ~~~~~~~g~~~~~-~~~~l~~~~w~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~p-----~~~~~~~l~~~ 97 (237)
T 2fz4_A 25 AEIYYERGTIVVK-GDAHVPHAKFDSRSGTYRALAFRYRDII-EYFESNGIEFVDNAADPIPTP-----YFDAEISLRDY 97 (237)
T ss_dssp EEEEEETTEEEEE-SCSCCTTCEEETTTTEEEEEGGGHHHHH-HHHHHTTCCEEEESCCCCCCC-----CCCCCCCCCHH
T ss_pred eEEEEecceEEEe-ccccCCCceeccccchhhcchhhHHHHH-HHHHHcCCCccccccccCCCc-----cccCCCCcCHH
Confidence 4689999999985 6778888 55555555555443 221122222111111222232 22334589999
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCc
Q 000129 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2114)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi 579 (2114)
|.+++..++.+ .++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.+ + ++
T Consensus 98 Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~-~---~~ 158 (237)
T 2fz4_A 98 QEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI-F---GE 158 (237)
T ss_dssp HHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGG-G---CG
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHh-C---CC
Confidence 99999988766 459999999999999998877653 12699999999999999999887 3 67
Q ss_pred E-EEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhcc
Q 000129 580 K-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2114)
Q Consensus 580 ~-v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~ 658 (2114)
+ +..++|+... ..+|+|+||+.+...... ....+++|||||+|++.+. .++.++. ..
T Consensus 159 ~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~---~~~~i~~--------~~ 216 (237)
T 2fz4_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIAQ--------MS 216 (237)
T ss_dssp GGEEEESSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHHH--------TC
T ss_pred CeEEEEeCCCCC------cCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCCh---HHHHHHH--------hc
Confidence 7 8889887653 578999999975322221 2245899999999998753 2333222 22
Q ss_pred ccccEEEEccccCCh
Q 000129 659 EHIRLVGLSATLPNY 673 (2114)
Q Consensus 659 ~~~riv~lSATlpn~ 673 (2114)
...++++||||+++.
T Consensus 217 ~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 IAPFRLGLTATFERE 231 (237)
T ss_dssp CCSEEEEEEESCC--
T ss_pred cCCEEEEEecCCCCC
Confidence 366789999997653
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=176.20 Aligned_cols=120 Identities=19% Similarity=0.374 Sum_probs=99.6
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+....+++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRNDK-------------------------------------FTVSAIYSDLPQQE 68 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 33457899999999999999999887532 34778899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||.| ..|.++++++.
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 136 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGGRFG--RKGVAINFVTN 136 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------SGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999999 55543 5667999999999987 67999999998
Q ss_pred CcHHHHHHh
Q 000129 889 SELRYYLSL 897 (2114)
Q Consensus 889 ~e~~~~~~l 897 (2114)
.+...+..+
T Consensus 137 ~~~~~~~~~ 145 (165)
T 1fuk_A 137 EDVGAMREL 145 (165)
T ss_dssp TTHHHHHHH
T ss_pred hHHHHHHHH
Confidence 887665543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=177.08 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=106.2
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..+++||||+++..|..++..|.. .+.++..+||+|++.+|..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ-----------------------------------DGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-----------------------------------TTCCEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 467899999999999999876632 245699999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC------CCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD------YPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~------~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+.|++|.++|||||+++++|+|+|++.+|| +++.| .+..+|+||+|||||. +..|.|++++.
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----------~~d~p~~~~~~~~~~~~~qr~GR~gR~--g~~g~~~~~~~ 145 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVV----------NFDLPVKQGEEPDYETYLHRIGRTGRF--GKKGLAFNMIE 145 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEEEE----------ESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEEC
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCEEE----------EeCCCCCccccCCHHHHHHHhcccccC--CCCceEEEEEc
Confidence 999999999999999999999999999999 77788 8999999999999998 57899999999
Q ss_pred cCcHHHHHHHHHhccC
Q 000129 1727 APRKEYYKKFLRLTQN 1742 (2114)
Q Consensus 1727 ~~~~~~~~~~lRl~~n 1742 (2114)
..+..+++++.+....
T Consensus 146 ~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 146 VDELPSLMKIQDHFNS 161 (175)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHhcC
Confidence 9988888887765543
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=192.29 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+|+|.++++.++.+ .+.++++|||||||+++.+++...+.. ..+ ++||++|+++|+.|++++++ ++....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~~lil~Pt~~L~~q~~~~l~-~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH-Hhcccccc
Confidence 7999999999999885 558889999999999998888776654 234 89999999999999999998 56554456
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
.+..+.|+..........++|+|+||+.+. +. ....+.++++||+||||++.+ + .+..+...+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~---~-------~~~~il~~~~~ 251 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---K-------SISSIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---H-------HHHHHTTTCTT
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc---c-------cHHHHHHHhhc
Confidence 777787776554444467799999998742 22 223578899999999999862 2 33344445556
Q ss_pred CceEEEEcccCCChh
Q 000129 1501 KIRIVALSTSLANAK 1515 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~ 1515 (2114)
..++++||||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 899999999998754
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=173.91 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=110.0
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDD-----------------------------------LGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 4567999999999999999876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+||+||. +..|.|++++...+..
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~--g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVI----------NYDLPLEKESYVHRTGRTGRA--GNKGKAISFVTAFEKR 145 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEE----------ESSCCSSHHHHHHHTTTSSCT--TCCEEEEEEECGGGHH
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEE----------EeCCCCCHHHHHHhccccCcC--CCCceEEEEecHHHHH
Confidence 9999999999999999999999999999999 889999999999999999998 5789999999999988
Q ss_pred HHHHHHHhc
Q 000129 1732 YYKKFLRLT 1740 (2114)
Q Consensus 1732 ~~~~~lRl~ 1740 (2114)
+++++.+..
T Consensus 146 ~~~~i~~~~ 154 (163)
T 2hjv_A 146 FLADIEEYI 154 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877544
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=178.81 Aligned_cols=143 Identities=17% Similarity=0.286 Sum_probs=98.8
Q ss_pred ccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHH
Q 000129 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (2114)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l 777 (2114)
..+.+.++.+... .+...+. +.+.....++++||||++++.+..++..|...+
T Consensus 18 ~~i~q~~~~v~~~---~K~~~L~----~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g-------------------- 70 (185)
T 2jgn_A 18 ENITQKVVWVEES---DKRSFLL----DLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-------------------- 70 (185)
T ss_dssp TTEEEEEEECCGG---GHHHHHH----HHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT--------------------
T ss_pred CCceEEEEEeCcH---HHHHHHH----HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC--------------------
Confidence 3456666655433 2333222 223233346799999999999999999887532
Q ss_pred HhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccc
Q 000129 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (2114)
Q Consensus 778 ~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~ 857 (2114)
.++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||++.
T Consensus 71 -----------------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~p~---- 125 (185)
T 2jgn_A 71 -----------------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS---- 125 (185)
T ss_dssp -----------------CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSCCS----
T ss_pred -----------------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCCCC----
Confidence 34778899999999999999999999999999999999999999999999 67664
Q ss_pred cCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+..+|+||+|||||.| ..|.++++++..+...+..
T Consensus 126 --s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 126 --DIEEYVHRIGRTGRVG--NLGLATSFFNERNINITKD 160 (185)
T ss_dssp --SHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGGHHH
T ss_pred --CHHHHHHHccccCCCC--CCcEEEEEEchhhHHHHHH
Confidence 7889999999999987 6799999998876554443
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=172.34 Aligned_cols=123 Identities=12% Similarity=0.233 Sum_probs=105.9
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 72 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYSDLPQQERDTI 72 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 3568899999999999998876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++.+.+..
T Consensus 73 ~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi----------~~~~p~~~~~~~qr~GR~gR~--g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 73 MKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRF--GRKGVAINFVTNEDVG 140 (165)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----------ESSCCSSGGGGGGSSCSCC-------CEEEEEEETTTHH
T ss_pred HHHHHcCCCEEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccC--CCCceEEEEEcchHHH
Confidence 9999999999999999999999999999999 788999999999999999998 5789999999999888
Q ss_pred HHHHHHHhcc
Q 000129 1732 YYKKFLRLTQ 1741 (2114)
Q Consensus 1732 ~~~~~lRl~~ 1741 (2114)
.++.+.+...
T Consensus 141 ~~~~~~~~~~ 150 (165)
T 1fuk_A 141 AMRELEKFYS 150 (165)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHc
Confidence 8887775443
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-16 Score=179.97 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.++++|.++++.+..+ ++++++||||||||+++.++++........ ....+++|++|+++|+.|+++++...+
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 5789999999987765 569999999999999999998887655321 134589999999999999999998766
Q ss_pred c-cCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHH
Q 000129 575 Q-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2114)
Q Consensus 575 ~-~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (2114)
. ..|..++.-..... ......++|+|+||+++ +.+.+ .++++++|||||||.+ +...+.....+..
T Consensus 134 ~~~~~~~~g~~~~~~~--~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~----~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEPGKSCGYSVRFES--ILPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHER----DINTDFLLVVLRD 201 (235)
T ss_dssp TCCTTSSEEEEETTEE--ECCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSC----CHHHHHHHHHHHH
T ss_pred ccccCceEEEeechhh--ccCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccC----CcchHHHHHHHHH
Confidence 5 33444543222111 11124689999999997 44433 3678999999999974 2222222222222
Q ss_pred HHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
. ....++.|++++|||+++.. +++|+...
T Consensus 202 i-~~~~~~~~~il~SAT~~~~~-~~~~~~~~ 230 (235)
T 3llm_A 202 V-VQAYPEVRIVLMSATIDTSM-FCEYFFNC 230 (235)
T ss_dssp H-HHHCTTSEEEEEECSSCCHH-HHHHTTSC
T ss_pred H-HhhCCCCeEEEEecCCCHHH-HHHHcCCC
Confidence 2 22345789999999998754 88888643
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-15 Score=193.60 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1338 GFKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
|| .++|+|.+++..++ ..+.++++.||||+|||++|++|++.. .+ +++|++||++|+.|+++++.. +
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~--~~~~~~~t~~l~~q~~~~~~~-l 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK--KVLIFTRTHSQLDSIYKNAKL-L 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC--EEEEEESCHHHHHHHHHHHGG-G
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC--cEEEEcCCHHHHHHHHHHHHh-c
Confidence 46 79999999877543 456789999999999999999998742 33 999999999999999988773 3
Q ss_pred cCCCCcEEEEEcCCccc--------------------------------------------------chhhccCCcEEEE
Q 000129 1415 GQGLGMRVVELTGETAM--------------------------------------------------DLKLLEKGQIIIS 1444 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~~--------------------------------------------------~~~~l~~~~IIV~ 1444 (2114)
+.++..+.|.... ..+....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3444444432100 0122356699999
Q ss_pred ChhhHHH-HHhhhcc----cccccceeEEEeccccccc
Q 000129 1445 TPEKWDA-LSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1445 TPe~l~~-l~r~~~~----~~~l~~v~liIiDEaH~l~ 1477 (2114)
|+..+.. ..++... ...+....++||||||.+.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999754 3332111 1134677899999999884
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=187.13 Aligned_cols=119 Identities=25% Similarity=0.407 Sum_probs=98.7
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 24 ~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 24 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDMSQGE 66 (300)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECSCCCTHH
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CCEEEEeCCCCHHH
Confidence 33447899999999999999998886532 35778899999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+. +..+|+||+|||||.| ..|.|+++++.
T Consensus 67 r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~p~------s~~~y~Qr~GRagR~g--~~G~~i~l~~~ 134 (300)
T 3i32_A 67 RERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRMPD------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 134 (300)
T ss_dssp HHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSCCS------STTHHHHHHTCCC-------CEEEEEECS
T ss_pred HHHHHHHhhcCCceEEEEechhhcCccccceeEEEE----cCCCC------CHHHHHHHccCcCcCC--CCceEEEEeCh
Confidence 999999999999999999999999999999999999 45443 5567999999999987 66999999999
Q ss_pred CcHHHHHH
Q 000129 889 SELRYYLS 896 (2114)
Q Consensus 889 ~e~~~~~~ 896 (2114)
.+..++..
T Consensus 135 ~e~~~~~~ 142 (300)
T 3i32_A 135 RERRDVEA 142 (300)
T ss_dssp STHHHHHH
T ss_pred HHHHHHHH
Confidence 88666554
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=183.35 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=107.0
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||++++.+..++..|.. .+..+..+||+|++.+|..+
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECSCCCTHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCCEEEEeCCCCHHHHHHH
Confidence 3578999999999999988876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+..
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI----------~~d~p~s~~~y~Qr~GRagR~--g~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRMPDRAEAYQHRSGRTGRA--GRGGRVVLLYGPRERR 138 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEE----------ESSCCSSTTHHHHHHTCCC-------CEEEEEECSSTHH
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEE----------EcCCCCCHHHHHHHccCcCcC--CCCceEEEEeChHHHH
Confidence 9999999999999999999999999999999 889999999999999999998 5689999999999888
Q ss_pred HHHHHHHhccC
Q 000129 1732 YYKKFLRLTQN 1742 (2114)
Q Consensus 1732 ~~~~~lRl~~n 1742 (2114)
+++.+.+..+.
T Consensus 139 ~~~~ie~~~~~ 149 (300)
T 3i32_A 139 DVEALERAVGR 149 (300)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 88877765544
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=195.48 Aligned_cols=341 Identities=19% Similarity=0.184 Sum_probs=204.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
.++|.|.+++..++ ..+.++++.||||+|||++|++|++. . .. +++|++||++|+.|+.+++. .+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---~~--~v~i~~pt~~l~~q~~~~~~-~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---KP--KVLFVVRTHNEFYPIYRDLT-KIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---CS--EEEEEESSGGGHHHHHHHHT-TCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---CC--eEEEEcCCHHHHHHHHHHHH-HHhhh
Confidence 68999999877654 45678999999999999999999996 2 33 99999999999999998887 56665
Q ss_pred CCcEEEEEcCCcccc------------------------------------------------------hhhccCCcEEE
Q 000129 1418 LGMRVVELTGETAMD------------------------------------------------------LKLLEKGQIII 1443 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~------------------------------------------------------~~~l~~~~IIV 1443 (2114)
.++++..+.|..... .+....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 678888888732210 11234679999
Q ss_pred EChhhHHHHHhhhcccccccceeEEEecccccccCCCCc-----------------------------------------
Q 000129 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP----------------------------------------- 1482 (2114)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~----------------------------------------- 1482 (2114)
+|+..+.....+.. ........++||||||.+.+ -..
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999765432211 11224678999999998765 100
Q ss_pred ------------hH---HHHHH---------------------HH----HHHHh------------------------hc
Q 000129 1483 ------------VL---EVIVS---------------------RM----RYIAS------------------------QV 1498 (2114)
Q Consensus 1483 ------------~l---e~i~s---------------------rl----~~i~~------------------------~~ 1498 (2114)
.. ..+.. .+ ..+.. .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 00 00110 00 00000 11
Q ss_pred CCC-ceEEEEcccCCChhHHHHHhcCCCCc-----eeecCCCCCccCcEEEEec-ccccchHHHHHhcCHHHHHHHHHHh
Q 000129 1499 ENK-IRIVALSTSLANAKDLGEWIGATSHG-----LFNFPPGVRPVPLEIHIQG-VDITNFEARMQAMTKPTFTAIVQHA 1571 (2114)
Q Consensus 1499 ~~~-~riV~lSATl~n~~dla~wl~~~~~~-----~~~f~~~~rpv~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l 1571 (2114)
... ..+|++|||++....+...+|..... .+.++..+ +-...+.+.. .+.+ +..+...+.......+...+
T Consensus 312 ~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~-~~~r~~~~~~~l~~~i~~l~ 389 (551)
T 3crv_A 312 NDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSK-YDMRSDNMWKRYADYLLKIY 389 (551)
T ss_dssp GCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCC-TTTCCHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHHHH
Confidence 123 68999999999877788888876322 22333333 2223333321 2111 11000001112222222221
Q ss_pred -cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHH
Q 000129 1572 -KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2114)
Q Consensus 1572 -~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~ 1650 (2114)
...+.++||++|.+..+.++.. ....|..-..+++ +..
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~--------------------------------------~~~~v~~q~~~~~---~~~ 428 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR--------------------------------------ISLPKYVESEDSS---VED 428 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT--------------------------------------CCSSEEECCSSCC---HHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHh--------------------------------------cCCcEEEcCCCCC---HHH
Confidence 2456899999999887766620 1112333333444 345
Q ss_pred HHHHHhcCCceEEEec--CccccccCCC---C---cEEEEEeeeEecC----------------CcCc----CCCCCHhH
Q 000129 1651 VSALFEAGKIKVCVMS--SSMCWGVPLT---A---HLVVVMGTQYYDG----------------QENA----HTDYPVTD 1702 (2114)
Q Consensus 1651 v~~~F~~g~i~VLVaT--~~la~Gvdip---~---~~vVI~gt~~yd~----------------~~~~----~~~~s~~~ 1702 (2114)
+++.|+.+.-.||+|| ..+..|||+| + ..|||.|.++-.. +..+ ..| -...
T Consensus 429 ~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~ 507 (551)
T 3crv_A 429 LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVT 507 (551)
T ss_dssp HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHH
T ss_pred HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHH
Confidence 6777754334899998 5889999999 3 5566666554322 1011 112 3556
Q ss_pred HHHhHcccCCCCCCCceEEEEEeecCcHHHHHHHH
Q 000129 1703 LLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1703 ~lQr~GRAGR~~~~~~G~~iil~~~~~~~~~~~~l 1737 (2114)
+.|-+||+-|.. +..|.++++-..-....|.+.+
T Consensus 508 l~Qa~GRlIR~~-~D~G~v~llD~R~~~~~~~~~~ 541 (551)
T 3crv_A 508 IKQAIGRAIRDV-NDKCNVWLLDKRFESLYWKKNL 541 (551)
T ss_dssp HHHHHHTTCCST-TCEEEEEEESGGGGSHHHHHHT
T ss_pred HHHHhccCccCC-CccEEEEEeehhcccchhhhhc
Confidence 779999999964 4577666654443444555554
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=171.39 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=103.8
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 29 LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 3567999999999999999876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcH-
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK- 1730 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~- 1730 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++.+.+.
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi----------~~d~p~~~~~~~qr~GR~~R~--g~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRF--GTKGLAITFVSDENDA 141 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----------ESSCCSSHHHHHHHHHHHTGG--GCCCEEEEEECSHHHH
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEE----------EECCCCCHHHHHHHhcccccC--CCCcEEEEEEcChhHH
Confidence 9999999999999999999999999999999 899999999999999999998 578999999987543
Q ss_pred HHHHHHH
Q 000129 1731 EYYKKFL 1737 (2114)
Q Consensus 1731 ~~~~~~l 1737 (2114)
.+++.+.
T Consensus 142 ~~~~~l~ 148 (172)
T 1t5i_A 142 KILNDVQ 148 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=174.35 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=94.9
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||+++..|..++..|.. .+.++..+||+|++.+|..+
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~r~~~ 88 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYH-----------------------------------EGYACTSIHGDRSQRDREEA 88 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHH-----------------------------------TTCCEEEEC--------CHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHH-----------------------------------cCCceEEEeCCCCHHHHHHH
Confidence 4678899999999999998876632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+..
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI----------~~d~p~s~~~~~Qr~GR~~R~--g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSDIEEYVHRIGRTGRV--GNLGLATSFFNERNIN 156 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBSEEE----------ESSCCSSHHHHHHHHTTBCCT--TSCEEEEEEECGGGGG
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHccccCCC--CCCcEEEEEEchhhHH
Confidence 9999999999999999999999999999999 789999999999999999998 5789999999988887
Q ss_pred HHHHHHHhc
Q 000129 1732 YYKKFLRLT 1740 (2114)
Q Consensus 1732 ~~~~~lRl~ 1740 (2114)
.++++.+..
T Consensus 157 ~~~~l~~~l 165 (185)
T 2jgn_A 157 ITKDLLDLL 165 (185)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777544
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=192.24 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+++|.|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 6899999977654 4566789999999999999999999971 2389999999999999999998
Q ss_pred HhhccCCcEEEEEeCCCccC------------------------------------------------------hhhhcc
Q 000129 572 NRLQMYDVKVRELSGDQTLT------------------------------------------------------RQQIEE 597 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~------------------------------------------------------~~~~~~ 597 (2114)
.+....++++..+.|..+.- +.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 77666688888888743210 111246
Q ss_pred ceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccccc
Q 000129 598 TQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2114)
Q Consensus 598 ~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (2114)
++|||+|+..+ +...+... .......++||||||.|.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~--~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFI--DIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTS--CCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhc--CCCcCCeEEEEecccchHH
Confidence 89999999986 44444432 2224568999999998865
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=171.32 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=94.9
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
++++||||++++.+..++..|...+ ..+..+||+|++.+|..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~~~~~~R~~~ 96 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------------------------------------VEAVAIHGGKDQEERTKA 96 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------------------------------------CCEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 5689999999999999999987643 236778999999999999
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
++.|++|.++|||||+++++|+|+|++++||+ ||++. +..+|+||+|||||.| ..|.++++++..
T Consensus 97 l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~p~------~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 97 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDMPE------EIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSCCS------SHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCCCC------CHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999999999 66664 7889999999999987 679999998875
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=168.33 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=100.8
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.++++||||+++..+..++..|.. .+..+..+||+|++.+|..++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~R~~~l 97 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLL-----------------------------------KGVEAVAIHGGKDQEERTKAI 97 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHH-----------------------------------HTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 356899999999999998876632 245689999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC-cHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKE 1731 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~-~~~ 1731 (2114)
+.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++... +..
T Consensus 98 ~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~d~p~~~~~~~qr~GR~gR~--g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 98 EAFREGKKDVLVATDVASKGLDFPAIQHVI----------NYDMPEEIENYVHRIGRTGCS--GNTGIATTFINKACDES 165 (191)
T ss_dssp HHHHHTSCSEEEECHHHHTTCCCCCCSEEE----------ESSCCSSHHHHHHHHTTSCC-----CCEEEEEECTTSCHH
T ss_pred HHHhcCCCEEEEEcCchhcCCCcccCCEEE----------EeCCCCCHHHHHHHhCccccC--CCCcEEEEEEcCchhHH
Confidence 999999999999999999999999999999 889999999999999999998 5789999999876 444
Q ss_pred HHHHHH
Q 000129 1732 YYKKFL 1737 (2114)
Q Consensus 1732 ~~~~~l 1737 (2114)
+.+.+.
T Consensus 166 ~~~~l~ 171 (191)
T 2p6n_A 166 VLMDLK 171 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-16 Score=175.31 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=98.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.++++||||++++.+..++..|...+ .++..+||+|++.+|..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAG-------------------------------------INNCYLEGEMVQGKRNE 71 (170)
Confidence 46789999999999999998886542 23567799999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|++|.++|||||+++++|+|+|++++||+++.++ +..+|+||+|||||.| ..|.++++++..+.
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~----------~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR----------SGDTYLHRIGRTARAG--RKGTAISLVEAHDH 139 (170)
Confidence 99999999999999999999999999999999944443 5567999999999987 67999999988775
Q ss_pred HHHH
Q 000129 892 RYYL 895 (2114)
Q Consensus 892 ~~~~ 895 (2114)
..+.
T Consensus 140 ~~~~ 143 (170)
T 2yjt_D 140 LLLG 143 (170)
Confidence 5544
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-16 Score=173.23 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.++++||||+++..|..++..|.. .+.++..+||+|++.+|..++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLRE-----------------------------------AGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 457899999999999888865521 244688999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
+.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||. +..|.|++++...+...
T Consensus 74 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~--g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVAARGIDIPDVSHVF----------NFDMPRSGDTYLHRIGRTARA--GRKGTAISLVEAHDHLL 141 (170)
Confidence 999999999999999999999999999999 889999999999999999997 57899999998887776
Q ss_pred HHHHHH
Q 000129 1733 YKKFLR 1738 (2114)
Q Consensus 1733 ~~~~lR 1738 (2114)
++++.+
T Consensus 142 ~~~~~~ 147 (170)
T 2yjt_D 142 LGKVGR 147 (170)
Confidence 665554
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=167.61 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..++++|.+++..+++++ ++++++|||+|||.++..++... ++ +++|++|+++|+.|+++.+++ | +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-~~ll~~~tG~GKT~~a~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~~-~----~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHHHHS------CS--CEEEEESSHHHHHHHHHHHGG-G----C
T ss_pred CCcCHHHHHHHHHHHhCC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEeCCHHHHHHHHHHHHh-C----C
Confidence 479999999999988754 59999999999999998776642 33 899999999999999988874 4 5
Q ss_pred cE-EEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1420 MR-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1420 ~~-v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
.+ +..++|+... ..+|+|+||+.+...... ....+++|||||+|++.+.. ++.++ ..+
T Consensus 158 ~~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~~---~~~i~-------~~~ 216 (237)
T 2fz4_A 158 EEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIA-------QMS 216 (237)
T ss_dssp GGGEEEESSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTTT---HHHHH-------HTC
T ss_pred CCeEEEEeCCCCC------cCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCChH---HHHHH-------Hhc
Confidence 67 8888887642 568999999986544432 12458999999999997543 32222 222
Q ss_pred CCCceEEEEcccCCChh
Q 000129 1499 ENKIRIVALSTSLANAK 1515 (2114)
Q Consensus 1499 ~~~~riV~lSATl~n~~ 1515 (2114)
...++++||||+.+.+
T Consensus 217 -~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 217 -IAPFRLGLTATFERED 232 (237)
T ss_dssp -CCSEEEEEEESCC---
T ss_pred -cCCEEEEEecCCCCCC
Confidence 3678899999997654
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=177.81 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
.++|.|.+....++ ..+.++++.||||+|||++|++|++..+... +. +++|++||++|+.|+.+++. ++...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~--kvli~t~T~~l~~Qi~~el~-~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL--KVLYLVRTNSQEEQVIKELR-SLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC--EEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC--eEEEECCCHHHHHHHHHHHH-HHhhc
Confidence 57999999987653 4567799999999999999999999987652 33 99999999999999999988 45443
Q ss_pred CCcEEEEEcC
Q 000129 1418 LGMRVVELTG 1427 (2114)
Q Consensus 1418 ~g~~v~~l~G 1427 (2114)
.++++..+.|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 3556655544
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=178.05 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+++|.|.+.+..+ +..+.++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHH
Confidence 5799999988744 45567899999999999999999999987643 2389999999999999999998
Q ss_pred HhhccCCcEEEEEeC
Q 000129 572 NRLQMYDVKVRELSG 586 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~G 586 (2114)
......++++..++|
T Consensus 73 ~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 73 SLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHSCCCEEECCC
T ss_pred HHhhccCeEEEEEEC
Confidence 766555677766665
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=136.22 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=81.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHH-hhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
.+.++||||+++..+..++..|... + ..+..+||+++..+|.
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g-------------------------------------~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELN-------------------------------------TEVPFLYGELSKKERD 153 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHC-------------------------------------SCCCEECTTSCHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcC-------------------------------------CcEEEEECCCCHHHHH
Confidence 4789999999999999888888653 2 2245679999999999
Q ss_pred HHHHHHhCC-Cce-EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 811 LVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 811 ~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
.+++.|++| .++ +|+||.++++|+|++++++||+++.+++|.. |.|++||++|.|..+...++.+...
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~----------~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAV----------EDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTT----------C--------------CCEEEEEEET
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhH----------HHHHHHhccccCCCCceEEEEEeeC
Confidence 999999998 777 7899999999999999999999777777764 9999999999996666566666665
Q ss_pred Cc
Q 000129 889 SE 890 (2114)
Q Consensus 889 ~e 890 (2114)
..
T Consensus 224 ~T 225 (271)
T 1z5z_A 224 GT 225 (271)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=134.81 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=84.5
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.++||||+++..+..++..|.. ..+..+..+||+++..+|..+
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~----------------------------------~~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEK----------------------------------ELNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHH----------------------------------HHCSCCCEECTTSCHHHHHHH
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHH----------------------------------hcCCcEEEEECCCCHHHHHHH
Confidence 4688999999999988777755421 134567889999999999999
Q ss_pred HHHHhcC-Cce-EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1652 SALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1652 ~~~F~~g-~i~-VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
++.|++| .++ +|+||+++++|+|++++.+|| +++.|.++..+.|++||++|.|......++.++....
T Consensus 156 i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI----------~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 156 ISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp HHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----------ECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred HHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE----------EECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999 777 799999999999999999999 8999999999999999999997666666777776653
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=107.20 Aligned_cols=144 Identities=18% Similarity=0.256 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchH--HHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 497 NRVQSRVYKSALSSADNILLCAPTGAGKT--NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT--~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
++.|.++++.++.+ ..++++||+|+||| ..++++.+..+... .+.++++++||..+|.++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~---------~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADG---------ERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHHHHHHHHHTCSS---------CCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHhhhc---------CCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 78999999998864 56999999999999 45556665543211 23479999999999999988877655
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~ 654 (2114)
..+++...... ........ -..++-.+|+... + +.... .. ..+++|||||++++. .+.++.++.
T Consensus 221 ~~l~l~~~~~~-~~~~~~~T--ih~ll~~~~~~~~-~-~~~~~-~~-l~~d~lIIDEAsml~---~~~~~~Ll~------ 284 (608)
T 1w36_D 221 RQLPLTDEQKK-RIPEDAST--LHRLLGAQPGSQR-L-RHHAG-NP-LHLDVLVVDEASMID---LPMMSRLID------ 284 (608)
T ss_dssp HHSSCCSCCCC-SCSCCCBT--TTSCC-------------CTT-SC-CSCSEEEECSGGGCB---HHHHHHHHH------
T ss_pred hcCCCCHHHHh-ccchhhhh--hHhhhccCCCchH-H-HhccC-CC-CCCCEEEEechhhCC---HHHHHHHHH------
Confidence 44443211100 00000000 0122223343211 1 11111 11 268999999999764 223333332
Q ss_pred hhccccccEEEEc
Q 000129 655 ETTKEHIRLVGLS 667 (2114)
Q Consensus 655 ~~~~~~~riv~lS 667 (2114)
..+...|+|++.
T Consensus 285 -~l~~~~~liLvG 296 (608)
T 1w36_D 285 -ALPDHARVIFLG 296 (608)
T ss_dssp -TCCTTCEEEEEE
T ss_pred -hCCCCCEEEEEc
Confidence 235567777764
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.6e-05 Score=101.04 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchH--HHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKT--ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~nvli~ApTGSGKT--l~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
++.|.+++..++. +..+++.||+||||| +.+.++.+..+.. ..+.++++++||..+|.++.+.+...... +++
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~-l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQ-LPL 225 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHH-SSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhc-CCC
Confidence 7899999999986 566999999999999 4455555554322 22338999999999999988776532221 222
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
..... .........+ ..++-.+|+... .+.. ......++++||||++++.. ..+..+...++.
T Consensus 226 ~~~~~-~~~~~~~~Ti--h~ll~~~~~~~~--~~~~--~~~~l~~d~lIIDEAsml~~----------~~~~~Ll~~l~~ 288 (608)
T 1w36_D 226 TDEQK-KRIPEDASTL--HRLLGAQPGSQR--LRHH--AGNPLHLDVLVVDEASMIDL----------PMMSRLIDALPD 288 (608)
T ss_dssp CSCCC-CSCSCCCBTT--TSCC-------------C--TTSCCSCSEEEECSGGGCBH----------HHHHHHHHTCCT
T ss_pred CHHHH-hccchhhhhh--HhhhccCCCchH--HHhc--cCCCCCCCEEEEechhhCCH----------HHHHHHHHhCCC
Confidence 11000 0000000000 022223343211 1111 11123789999999997741 122233344567
Q ss_pred CceEEEEcc
Q 000129 1501 KIRIVALST 1509 (2114)
Q Consensus 1501 ~~riV~lSA 1509 (2114)
..|+|++.-
T Consensus 289 ~~~liLvGD 297 (608)
T 1w36_D 289 HARVIFLGD 297 (608)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEcc
Confidence 788888763
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=98.01 Aligned_cols=68 Identities=31% Similarity=0.388 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (2114)
..||+-|.+|+..++..++-.||.||.|+|||.+..-.|.+.+..+ .+|++++||..-|.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-----------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-----------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-----------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-----------CeEEEEcCchHHHHHHHHHHHh
Confidence 4689999999999998777789999999999998766666555432 3799999999999999988865
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=96.80 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
..+|+-|.+|+..++..++-.||.||+|||||.+..-.|.+.+.. +. ++++++||..-|+++..++.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~--~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GL--KVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEcCchHHHHHHHHHHH
Confidence 479999999999999877778999999999998876555555543 34 89999999999999998876
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00042 Score=88.93 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=51.9
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1338 GFKHFNPIQTQVFTVLYNT----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~----~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
.|..+|+-|.+++..++.. +.+++|.||.|||||.+. ..++..+... ... ++++++||...+..+...
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-~~~--~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-GET--GIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-TCC--CEEEEESSHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-CCc--eEEEecCcHHHHHHHHhh
Confidence 3889999999999987543 458999999999999776 4555556552 222 689999999888776553
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0035 Score=84.29 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++. ..+.+++|.|+.|||||.+..--+.+.+..+.. .+.+++++++|+..+.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-------~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-------SPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-------ChhhEEEEeccHHHHHHHHHHHHHH
Confidence 479999999997 345679999999999999987777776654321 2347999999999999999999987
Q ss_pred hcc--CCcEEEEEe
Q 000129 574 LQM--YDVKVRELS 585 (2114)
Q Consensus 574 ~~~--~gi~v~~l~ 585 (2114)
++. .++.|..++
T Consensus 78 ~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 78 MGTSQGGMWVGTFH 91 (647)
T ss_dssp HCSCCTTCEEEEHH
T ss_pred hccccCCcEEEcHH
Confidence 653 345555544
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00057 Score=87.72 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (2114)
.|..||+-|.+++..++.. +.+++|.||.|+|||.+.. .++..+.... ...+++++||...+.++.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~---------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG---------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT---------CCCEEEEESSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC---------CceEEEecCcHHHHHHHH
Confidence 5789999999999976543 4489999999999997664 4444444321 125899999999888776
Q ss_pred HHH
Q 000129 568 GNL 570 (2114)
Q Consensus 568 ~~~ 570 (2114)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.001 Score=88.56 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
+..+|+.|.+|+..++. +..++|.||+|||||.+..- ++..+.. ..+. ++++++||...+.++..++.
T Consensus 178 ~~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~-~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSAT-IVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHH-HHHHHHT-SSSC--CEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHH-HHHHHHH-cCCC--eEEEEeCcHHHHHHHHHHHH
Confidence 56799999999999886 55689999999999987643 3344443 1234 89999999999999988776
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00093 Score=90.90 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
.+..||+.|.+|+..++. +..++|.||.|+|||.+..-.+.+.+... +.++++++||...|.++.+++.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~~l~~~~----------~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKIH----------KDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHHHHHHHH----------CCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 456899999999998875 45689999999999988655444333221 2379999999999999999887
Q ss_pred Hh
Q 000129 572 NR 573 (2114)
Q Consensus 572 ~~ 573 (2114)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 64
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00084 Score=89.46 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=54.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
....+|+.|.+|+..++.+ ..++|.||+|+|||.+..-.+ ..+... .+.++++++||...|.++.+++.
T Consensus 177 ~~~~ln~~Q~~av~~~l~~-~~~li~GppGTGKT~~~~~~i-~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIV-YHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp TSCCCCHHHHHHHHHHHTC-SEEEEECCTTSCHHHHHHHHH-HHHHTS---------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcC-CCeEEECCCCCCHHHHHHHHH-HHHHHc---------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3567999999999998864 568999999999998765443 333321 12379999999999999988876
Q ss_pred H
Q 000129 572 N 572 (2114)
Q Consensus 572 ~ 572 (2114)
+
T Consensus 246 ~ 246 (624)
T 2gk6_A 246 Q 246 (624)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=89.37 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~ 1412 (2114)
+..+|+.|.+|+..++. +..++|.||+|||||.+..-.+...+.. .+. ++++++||...+.++..++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~--~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKD--RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCC--CEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCC--eEEEEcCcHHHHHHHHHHHHh
Confidence 56899999999999986 4568999999999998764444333322 234 899999999999999998873
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0023 Score=83.95 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
.+++.|.+++..++. +..++|.||.|||||.+. ..++..+.. .+. ++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~--~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTT-KAVADLAES--LGL--EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHH-HHHHHHHHH--TTC--CEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEecCcHHHHHHhHh
Confidence 689999999999886 567999999999999875 445555554 233 89999999998877654
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=88.15 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
....||+.|.+|+..++.+ ..++|.||.|+|||.+..- ++..+... .+.++++++||...|.++.+++.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~~-~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSAT-IVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHHH-HHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHHH-HHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999998864 5689999999999987643 33444331 12379999999999999988876
Q ss_pred H
Q 000129 572 N 572 (2114)
Q Consensus 572 ~ 572 (2114)
+
T Consensus 422 ~ 422 (800)
T 2wjy_A 422 Q 422 (800)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0022 Score=87.09 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHH
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~ 1411 (2114)
...+|+.|.+|+..++. +..++|.||+|+|||.+.. .++..+.. ..+. ++++++||...+.++..++.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~-~~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSA-TIVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHH-HHHHHHHT-TCSS--CEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHH-HHHHHHHH-cCCC--cEEEEcCcHHHHHHHHHHHH
Confidence 56799999999999886 4568999999999998764 34444443 1233 89999999999999888776
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=83.60 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (2114)
.|++.|.+++..++. +..++|.||.|+|||.+.. .++..+... +.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~-~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTK-AVADLAESL----------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHH-HHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHH-HHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh
Confidence 689999999998875 4679999999999998743 344444332 237999999999888776543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.035 Score=61.18 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=30.1
Q ss_pred cCCCCCCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHH
Q 000129 490 FKGMTQLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 490 f~g~~~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l 530 (2114)
|.+|..-++.|.+++..+. ..+++++++||+|+|||..+..
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 4445444678888887664 2457899999999999987643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.048 Score=60.05 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHH--------cCCCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1343 NPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1343 ~~iQ~q~~~~il--------~~~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
++.|.+++..+. ..+.++++.||+|+|||..+. ++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 567888877653 246789999999999998773 4444443
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.068 Score=70.63 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+|+|...+..+. +...+++.+|-|+|||.+....++..+... .+..+++++|++..|.++...++..+
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 58999999998763 345588999999999998766555555433 13479999999999999998888776
Q ss_pred ccC
Q 000129 575 QMY 577 (2114)
Q Consensus 575 ~~~ 577 (2114)
...
T Consensus 233 ~~~ 235 (592)
T 3cpe_A 233 ELL 235 (592)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.028 Score=75.42 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+..+|+-|.+++. ..+.+++|.|+.|||||.+..--+...+.... ...-+++++++|+..+.++.+++.+.++..
T Consensus 7 ~~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~~~- 81 (647)
T 3lfu_A 7 LDSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMGTS- 81 (647)
T ss_dssp HTTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHCSC-
T ss_pred hhcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhccc-
Confidence 3579999999997 34677999999999999987666665555421 112289999999999999999988655421
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHH-HHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRR 1455 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~-l~r~ 1455 (2114)
...+-|+|...|.. +++.
T Consensus 82 -------------------~~~~~v~Tfhs~~~~il~~ 100 (647)
T 3lfu_A 82 -------------------QGGMWVGTFHGLAHRLLRA 100 (647)
T ss_dssp -------------------CTTCEEEEHHHHHHHHHHH
T ss_pred -------------------cCCcEEEcHHHHHHHHHHH
Confidence 13577888887643 4443
|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
Probab=95.23 E-value=0.023 Score=51.99 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=52.0
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.+|.+|||++...+.+|.++| |.|+.+|..+..++...+.++++.+..++...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~G---i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARG---VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTT---CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcC---CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 468899999999999999999 99999999999999999999999999999888775
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.097 Score=64.67 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
.++|+|...+..+.. .+.+++..+-+.|||.++...++..+.. .++. .+++++|++..|..+++.++..+
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~--~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSC--EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCC--eEEEEeCCHHHHHHHHHHHHHHH
Confidence 689999999988753 4558999999999998876655543333 2333 89999999999998887777544
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.26 Score=60.89 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+|+|...+..+.. ...+++..+-+.|||.++...++..+... .+..+++++|++.-|.++++.+...+
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 789999999986543 34588999999999998776666544332 23479999999999999988887765
Q ss_pred c
Q 000129 575 Q 575 (2114)
Q Consensus 575 ~ 575 (2114)
.
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.031 Score=75.21 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..|.++.+++.+.+
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999874 35679999999999999887777776655311 22379999999999999999998875
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~ 608 (2114)
+..+ ...+-|+|-..|
T Consensus 72 ~~~~------------------~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 72 GRKE------------------ARGLMISTFHTL 87 (673)
T ss_dssp CTTT------------------TTTSEEEEHHHH
T ss_pred Cccc------------------ccCCEEEeHHHH
Confidence 4311 124678888876
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.18 Score=66.66 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
.++|+|...+..+.. ...+++.+|-|+|||.+....++..+.. .++. ++++++|++..|.+++..++..+..
T Consensus 163 ~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-~~~~--~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHT-SSSC--EEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHh-CCCC--eEEEEECCHHHHHHHHHHHHHHHHh
Confidence 589999999988743 4558999999999998876544444443 2333 8999999999999999888755543
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.046 Score=74.04 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..|.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-------~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4799999999874 35679999999999999987777776654211 2347999999999999999999887
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccc
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH 633 (2114)
++.. ...+-|+|-..| ..+.|......-+ .-++-|+|+.+
T Consensus 80 l~~~-------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 80 LGGA-------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp HGGG-------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred hccc-------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 5420 123578888876 3334432111100 11356777665
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.15 Score=61.40 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=64.8
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC---ceEEEEEcccH-HHHHHHHHHHHHHhcCCCCcEEEEEcCCccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG---VMRAVYIAPLE-ALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~---~~k~l~I~Ptr-~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~ 1431 (2114)
...+++|.||+|+|||.++- .+++.+......+ .+..++|--.. .--.+.+..+.+.+. |.++ +++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~---~~~~-- 114 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENL---CGDI-- 114 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----CCC--
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCC---CchH--
Confidence 45689999999999998874 4455554422111 34666664221 111233333333442 2111 0100
Q ss_pred chhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1432 ~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
+-+.+..++.... ..-...-+|++||+|.+.+.. .+.. +-.+......++-+|+.++|+
T Consensus 115 -------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~~q~-----~L~~-l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 115 -------------SLEALNFYITNVP--KAKKRKTLILIQNPENLLSEK-----ILQY-FEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp -------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSCCTH-----HHHH-HHHHHHCSSCCEEEEEECCSS
T ss_pred -------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhhcch-----HHHH-HHhcccccCCcEEEEEEecCc
Confidence 1122333333210 112346799999999987221 2222 222222223467788899998
Q ss_pred CChh
Q 000129 1512 ANAK 1515 (2114)
Q Consensus 1512 ~n~~ 1515 (2114)
.+..
T Consensus 174 d~~~ 177 (318)
T 3te6_A 174 VTIR 177 (318)
T ss_dssp CCCH
T ss_pred ccch
Confidence 6643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.21 Score=55.35 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=26.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.-.++.||.|+|||+.+.-.+.+.... +. +++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~--~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG---KK--KVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT---TC--EEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeecc
Confidence 457899999999998875444444333 33 889998984
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.062 Score=72.35 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+||-|.+++.. .+.+++|.|+.|||||.+..--+...+.... +.. ++++|+.|+..|.++.+++.+.++
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~--~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH--HeEEEeccHHHHHHHHHHHHHHcC
Confidence 589999999974 3677999999999999887666666555421 223 899999999999999998886554
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.41 Score=57.58 Aligned_cols=127 Identities=9% Similarity=0.132 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH-----HHHHHHHHHHHHhhccCCcEEEEEe
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK-----ALVAEVVGNLSNRLQMYDVKVRELS 585 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r-----aLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2114)
..+++++||+|+|||.++-. +++.+...... .....+..++|--+. .+..++++.+ . |.++ +
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~~~~~~---~~~~~~~~v~INc~~~~t~~~~~~~I~~~L----~--g~~~---~ 111 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELITSSAR---KELPIFDYIHIDALELAGMDALYEKIWFAI----S--KENL---C 111 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHHHTTTT---TSSCCEEEEEEETTCCC--HHHHHHHHHHH----S--CCC-----
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhhh---ccCCceEEEEEeccccCCHHHHHHHHHHHh----c--CCCC---C
Confidence 45899999999999988754 44555432111 012246677765222 2223333332 1 1111 1
Q ss_pred CCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
++. +-+.+..+..... ..-...-+|++||+|.+.+ .. ++-.+.+........+-+|+
T Consensus 112 ~~~---------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~~--q~----~L~~l~~~~~~~~s~~~vI~ 168 (318)
T 3te6_A 112 GDI---------------SLEALNFYITNVP--KAKKRKTLILIQNPENLLS--EK----ILQYFEKWISSKNSKLSIIC 168 (318)
T ss_dssp CCC---------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSCC--TH----HHHHHHHHHHCSSCCEEEEE
T ss_pred chH---------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhhc--ch----HHHHHHhcccccCCcEEEEE
Confidence 110 1122322222110 0112346899999999872 12 22333333333344567888
Q ss_pred EccccCCh
Q 000129 666 LSATLPNY 673 (2114)
Q Consensus 666 lSATlpn~ 673 (2114)
.++|+.+.
T Consensus 169 i~n~~d~~ 176 (318)
T 3te6_A 169 VGGHNVTI 176 (318)
T ss_dssp ECCSSCCC
T ss_pred EecCcccc
Confidence 89997653
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.1 Score=70.60 Aligned_cols=110 Identities=22% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
..+||-|.+++.. .+.+++|.|+.|||||.+..--+...+.... -..-++++|+.|+..|.++.+++.+.++..
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGGA-- 83 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGGG--
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhccc--
Confidence 5799999999874 4567999999999999887666666665421 112279999999999999999888655421
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccc
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH 1474 (2114)
...+-|+|-..|. .++++......+ .-++-|+|+.+
T Consensus 84 ------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp ------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred ------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 1236788877764 344442221111 11345777765
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.066 Score=61.13 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.+.-+++.||+|+|||+.+.-.+.+.... +. +++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~--kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DV--KYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC--EEEEEEecc
Confidence 34567889999999999876555544433 33 788888865
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.05 Score=63.93 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHhHCCCcccccCCCccccChhHHHHhhcccccccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCC
Q 000129 966 ERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVR 1045 (2114)
Q Consensus 966 ~~~~~li~~al~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~i~s~s~ef~~i~~r 1045 (2114)
.+..+.+..|+..|...|+|+.+ | .+|++|+.+|.++++|...+++..+...+|. .+++.|.|+-++ .++.+|
T Consensus 14 pP~~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~-~~~l~iaA~Ls~-~~~f~~ 86 (270)
T 3i4u_A 14 GSPMETLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCS-EEMLTIVSMLSV-QNVFYR 86 (270)
T ss_dssp CCHHHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCH-HHHHHHHHHHTS-SCCBCC
T ss_pred CcCHHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHCC-CccccC
Confidence 34456789999999999999733 3 7999999999999999999999988776665 677777776554 577788
Q ss_pred hhHHHHH
Q 000129 1046 QDEKMEL 1052 (2114)
Q Consensus 1046 ~~e~~~l 1052 (2114)
+.++.+.
T Consensus 87 p~~~~~~ 93 (270)
T 3i4u_A 87 PKDKQAL 93 (270)
T ss_dssp CGGGHHH
T ss_pred CchhHHH
Confidence 7765543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.17 Score=61.46 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=80.4
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCCcccc
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGETAMD 1432 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~-l~G~~~~~ 1432 (2114)
+..++-++|+|++|+|||..+...+...... +. +++|+..- .-..|+..++....... .... ..|..+..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~--~Vl~fSlE-ms~~ql~~Rlls~~~~v---~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DR--GVAVFSLE-MSAEQLALRALSDLTSI---NMHDLESGRLDDD 113 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC--EEEEEESS-SCHHHHHHHHHHHHHCC---CHHHHHHTCCCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCC-CCHHHHHHHHHHHhhCC---CHHHHhcCCCCHH
Confidence 3457779999999999998776555544432 33 77777543 22344454443222211 1100 11222211
Q ss_pred -h-------hhccCCcEEE-ECh----hhHHHHHhhhcccccccceeEEEecccccccCC-----CCchHHHHHHHHHHH
Q 000129 1433 -L-------KLLEKGQIII-STP----EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 -~-------~~l~~~~IIV-~TP----e~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~le~i~srl~~i 1494 (2114)
+ ..+...++.| -+| ..+...++++... ...+++||||-++++... +...+..+...++.+
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~l 191 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTL 191 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 1 1223345555 333 3444445543221 116899999999988642 334566677778877
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
+..+ ++.+|++|-.
T Consensus 192 Akel--~vpVi~lsQl 205 (338)
T 4a1f_A 192 AREL--EIPIIALVQL 205 (338)
T ss_dssp HHHH--TSCEEEEEEC
T ss_pred HHHc--CCeEEEEEec
Confidence 7654 6778888764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.2 Score=57.77 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~ 1410 (2114)
..++.++|.||+|+|||..+...+...... ++ +++|+.-.. -..++.+++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~--~v~~~~~e~-~~~~~~~~~ 70 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE--PGIYVALEE-HPVQVRQNM 70 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC--CEEEEESSS-CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEccC-CHHHHHHHH
Confidence 456789999999999998875554444432 34 677776432 234444443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.54 Score=58.11 Aligned_cols=21 Identities=52% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2114)
...+++++||+|+|||..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 345799999999999987643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.11 Score=55.34 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (2114)
.++.+++++|+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456799999999999986543
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.27 Score=60.90 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=19.4
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
..+++|.||+|+|||.++ ..+.+.+.
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999887 34444443
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.13 Score=73.90 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
..+|+-|.+++.. .+.|++|.|..|||||.+..--+++.+.... +-..-+++++++|++.|.++.+++...++.
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3689999999874 3678999999999999988777777766532 011127999999999999999999876653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.4 Score=53.84 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.6
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
.++++.||+|+|||.++.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 369999999999998764
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.18 Score=63.03 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=52.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCCccCh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2114)
-.++.|+.|||||.... +.+.. .+.++++||++++.++.+++.+. |. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~------------~~~lVlTpT~~aa~~l~~kl~~~----~~--------~---- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF------------EEDLILVPGRQAAEMIRRRANAS----GI--------I---- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT------------TTCEEEESCHHHHHHHHHHHTTT----SC--------C----
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc------------CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----
Confidence 46799999999998642 22211 13699999999998887776432 10 0
Q ss_pred hhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 593 ~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
.....-|.|-+++ +.+... ...-..++|||||+-+++
T Consensus 211 ---~~~~~~V~T~dsf--L~~~~~--~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 ---VATKDNVRTVDSF--LMNYGK--GARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp ---CCCTTTEEEHHHH--HHTTTS--SCCCCCSEEEEETGGGSC
T ss_pred ---ccccceEEEeHHh--hcCCCC--CCCCcCCEEEEeCcccCC
Confidence 0122346677753 222211 111237899999999774
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.34 Score=61.59 Aligned_cols=143 Identities=24% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc-h-
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-L- 1433 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~-~- 1433 (2114)
.++-++|+|++|+|||..+...+.+.... .+. +++|+... .-..|+..++..........++ ..|..+.. +
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~--~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~~~ 271 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGV--GVGIYSLE-MPAAQLTLRMMCSEARIDMNRV--RLGQLTDRDFS 271 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCC--CEEEEESS-SCHHHHHHHHHHHHTTCCTTTC--CGGGCCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEECC-CCHHHHHHHHHHHHcCCCHHHH--hCCCCCHHHHH
Confidence 46779999999999998776555554432 123 67776543 2233444444322221100000 12322211 1
Q ss_pred ------hhccCCcEEEE-----ChhhHHHHHhhhcccccccceeEEEecccccccCC--C---Cc---hHHHHHHHHHHH
Q 000129 1434 ------KLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--G---GP---VLEVIVSRMRYI 1494 (2114)
Q Consensus 1434 ------~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~--~---g~---~le~i~srl~~i 1494 (2114)
..+....+.+- |++.+...++++... ..+++||||.++.+... . .. .+..+...++.+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 12234456553 344444444443322 25899999999988643 1 11 234455666666
Q ss_pred HhhcCCCceEEEEccc
Q 000129 1495 ASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2114)
...+ ++.+|++|-.
T Consensus 349 Ake~--~v~vi~lsql 362 (444)
T 2q6t_A 349 AREL--GIPIIALSQL 362 (444)
T ss_dssp HHHH--TSCEEEEEEC
T ss_pred HHHh--CCeEEEEecC
Confidence 6543 5777877753
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.16 Score=72.97 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
..+|+-|.+++.. .+.+++|.|.-|||||.+..--+++.+..+.. ..+.-+++++++|++.|.++.+++...
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3689999999874 36689999999999999988777777765321 112337999999999999999999886
Q ss_pred hc
Q 000129 574 LQ 575 (2114)
Q Consensus 574 ~~ 575 (2114)
+.
T Consensus 81 l~ 82 (1232)
T 3u4q_A 81 LE 82 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.38 Score=58.07 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=75.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE-cCC--ccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL-TGE--TAM 1431 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l-~G~--~~~ 1431 (2114)
..++-++|+|++|+|||..+...+.+...+ +. +++|+.-- .-..|+..++..... ++....+ .|. .+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~--~vl~~slE-~s~~~l~~R~~~~~~---~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 136 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC--EEEEEESS-SCHHHHHHHHHHHHT---TCCHHHHHSCHHHHCS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcCCCCCCH
Confidence 457779999999999998776655554433 23 78887643 333444444443222 1111000 111 000
Q ss_pred -c-------hhhccCCcEEEE-----ChhhHHHHHhhhccccccccee--EEEecccccccCCC--C---chHHHHHHHH
Q 000129 1432 -D-------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--G---PVLEVIVSRM 1491 (2114)
Q Consensus 1432 -~-------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~--liIiDEaH~l~~~~--g---~~le~i~srl 1491 (2114)
+ ...+....+.+. |++.+...++++... ..++ +||||-++.+.... . ..+..+...+
T Consensus 137 ~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 137 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 0 112223456553 334444444443222 2578 99999999886421 1 2334556666
Q ss_pred HHHHhhcCCCceEEEEccc
Q 000129 1492 RYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2114)
+.++..+ ++.++++|-.
T Consensus 214 k~lAk~~--~i~vi~lsql 230 (315)
T 3bh0_A 214 KKMAREL--DVVVIALSQL 230 (315)
T ss_dssp HHHHHHH--TCEEEEEECC
T ss_pred HHHHHHh--CCeEEEEeec
Confidence 6666543 5677777653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.4 Score=57.50 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=18.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++++.||+|+|||.++. ++.+.+
T Consensus 67 ~~~vll~G~~GtGKT~la~-~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL-KMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHH
Confidence 4479999999999998874 333333
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.33 Score=55.55 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHHHHHc--CCCcEEEEccCCCchHHHHHH
Q 000129 499 VQSRVYKSALS--SADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 499 iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l 530 (2114)
...+.+..+.. ...+++++||+|+|||..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 33444444443 356899999999999987643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.86 Score=55.09 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=24.5
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.++++.||+|+|||.++. ++.+.+... +. .++|+..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~~--~~--~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GY--RVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHHT--TC--CEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHC--CC--EEEEEEH
Confidence 579999999999998873 444555441 22 5666653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=91.64 E-value=0.31 Score=62.12 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=73.3
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCCccc-c
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGETAM-D 1432 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~-l~G~~~~-~ 1432 (2114)
..++-++|.|++|+|||..+...+...... .+. +++|+...-. ..|+..++..... |+.... ..|.... +
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~--~Vl~~s~E~s-~~~l~~r~~~~~~---~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK--TNE--NVAIFSLEMS-AQQLVMRMLCAEG---NINAQNLRTGKLTPED 272 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSC--CEEEEESSSC-HHHHHHHHHHHHH---TCCHHHHHTSCCCHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhcCCCCHHH
Confidence 357779999999999998876555544433 122 5777653321 2344444321111 111000 1122211 1
Q ss_pred h-------hhccCCcEEEE-----ChhhHHHHHhhhcccccccceeEEEecccccccCCC------CchHHHHHHHHHHH
Q 000129 1433 L-------KLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG------GPVLEVIVSRMRYI 1494 (2114)
Q Consensus 1433 ~-------~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~------g~~le~i~srl~~i 1494 (2114)
. ..+...++.+. |++.+....++.... .++++||||+.+.+.... ...+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 11233456554 344444444443221 368999999999886421 12334455666666
Q ss_pred HhhcCCCceEEEEcc
Q 000129 1495 ASQVENKIRIVALST 1509 (2114)
Q Consensus 1495 ~~~~~~~~riV~lSA 1509 (2114)
...+ ++.+|++|-
T Consensus 350 Ake~--~i~vi~~sq 362 (454)
T 2r6a_A 350 AREL--EVPVIALSQ 362 (454)
T ss_dssp HHHH--TCCEEEEEC
T ss_pred HHHh--CCeEEEEec
Confidence 5543 566777764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.92 Score=57.39 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=26.1
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.++++.||+|+|||..+ -++.+.+....++. +++|+...
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~--~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDL--RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHHHHHCCSS--CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCC--eEEEeeHH
Confidence 57999999999999887 34555554422233 66666543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.55 Score=55.54 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=17.3
Q ss_pred cCCCcEEEEccCCCchHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~ 529 (2114)
....+++++||+|+|||..+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 345679999999999998763
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.42 Score=57.32 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34799999999999988743
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.48 Score=58.62 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34799999999999988743
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=1.1 Score=54.17 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
.+++++||+|+|||..+-. +.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~-i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQA-AGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHH
Confidence 4799999999999987643 33443
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.06 E-value=0.29 Score=54.44 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=27.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
.-.+++||.|||||..++-.+.+....+ .+++++.|.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g-----------~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAK-----------QKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-----------CEEEEEEecc
Confidence 3467899999999988776655554332 3789999984
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.84 Score=51.85 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=27.5
Q ss_pred cee--EEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1464 QVS--LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1464 ~v~--liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
+.+ ++|+||...+..........++..++.+... .+.-+|+.|-..
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK--WNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 567 9999999977532223445566666666443 245566665554
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.5 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
...++++.||+|+|||..+. .+.+.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~-~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH-AACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 36789999999999998773 3333333
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.75 E-value=1.9 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000129 500 QSRVYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 500 Q~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (2114)
..+.+...+... .+++++||+|+|||..+..
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 334444444443 3699999999999987643
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=90.56 E-value=0.37 Score=60.22 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l 1436 (2114)
..-.+|.|+.|||||.... +.+. .. +.++++||++++.++.+++. .. |. .
T Consensus 161 ~~v~~I~G~aGsGKTt~I~----~~~~----~~--~~lVlTpT~~aa~~l~~kl~----~~-~~--------~------- 210 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEIL----SRVN----FE--EDLILVPGRQAAEMIRRRAN----AS-GI--------I------- 210 (446)
T ss_dssp SEEEEEEECTTSCHHHHHH----HHCC----TT--TCEEEESCHHHHHHHHHHHT----TT-SC--------C-------
T ss_pred ccEEEEEcCCCCCHHHHHH----HHhc----cC--CeEEEeCCHHHHHHHHHHhh----hc-Cc--------c-------
Confidence 3456889999999997652 2221 12 56999999999877665443 21 11 0
Q ss_pred cCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
.....-|.|-+++. .+.. ....-..+++||||+-++.
T Consensus 211 ~~~~~~V~T~dsfL---~~~~-~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 VATKDNVRTVDSFL---MNYG-KGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp CCCTTTEEEHHHHH---HTTT-SSCCCCCSEEEEETGGGSC
T ss_pred ccccceEEEeHHhh---cCCC-CCCCCcCCEEEEeCcccCC
Confidence 01123367766543 2211 1112247899999999773
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.48 Score=54.59 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=32.7
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+..++.++++||+|+|||..++..+......+ .+++|+.-... ..++.+++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-----------~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-----------EPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-----------CeEEEEEccCC-HHHHHHHHH
Confidence 34567789999999999998766555554322 15777754322 344444443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.62 Score=54.25 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2114)
...+++++||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999998764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=3.4 Score=46.64 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCC---cEEEEccCCCchHHHHHH
Q 000129 500 QSRVYKSALSSAD---NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 500 Q~~~i~~~l~~~~---nvlv~APTGsGKT~~a~l 530 (2114)
..+.+..++..+. .++++||+|+|||..+..
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 3344444444333 689999999999987643
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.36 E-value=0.94 Score=58.63 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
..++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=90.27 E-value=0.34 Score=51.61 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
.++.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999876
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.72 Score=51.06 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
..-.++.||.|||||.-.+-++-+.... +. +++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~--kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEccc
Confidence 3457889999999997766666555444 33 88999887
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.18 E-value=1.4 Score=54.78 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..++|++||+|+|||.++-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45899999999999987643
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.12 E-value=0.43 Score=53.01 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=26.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.-.++.||.|||||+.++-.+.+.... +. +++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~--kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA---KQ--KIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEecc
Confidence 457889999999998876555444333 33 889999984
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.92 E-value=2.7 Score=45.54 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45899999999999987653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.4 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=19.4
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
...+++|.||+|+|||.++. .+.+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~-~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR-LVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH-HHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 45689999999999998774 333444
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.79 Score=54.18 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.6
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
....++++.||+|+|||.++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 346679999999999998773
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=1.8 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=18.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
.+++++||+|+|||..+.. +.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~a-ia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQS-IGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 4799999999999987643 34444
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.46 E-value=0.73 Score=55.73 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999998873
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.44 E-value=1.3 Score=53.67 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=27.2
Q ss_pred ccEEEEecccccccCCc----hhHHHHHHHHHHHHhhcc-ccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRG----PVLESIVARTVRQIETTK-EHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg----~~le~iv~rl~~~~~~~~-~~~riv~lSAT 669 (2114)
..+|+|||+|.+...++ .....++..++..+.... ...+++.+.||
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 46999999999865332 234455555555554332 23455666666
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=0.31 Score=43.64 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000129 1141 QTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2114)
Q Consensus 1141 ~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2114)
.+.|..+||||+...++|-++==+++.+...+.+||.++++ ++. ++.|++++|.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHhc
Confidence 46788999999999999887644789999999999999988 566 9999999974
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.71 Score=57.48 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34689999999999998774
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=89.19 E-value=0.7 Score=58.46 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=77.0
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCC--ccc
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGE--TAM 1431 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~-l~G~--~~~ 1431 (2114)
..++-++|+|++|+|||..++..+.+.... +. +++|+.-- .-..|+..++..... |+.... ..|. ...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~--~vl~fSlE-ms~~ql~~R~~~~~~---~i~~~~l~~g~~~l~~ 265 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 265 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC--EEEEECSS-SCTTHHHHHHHHHHS---CCCHHHHHHTGGGTCC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC--EEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcccCCCCH
Confidence 356779999999999998876666555443 33 78887543 223344444332222 111100 1122 111
Q ss_pred -c-------hhhccCCcEEEE-----ChhhHHHHHhhhccccccccee--EEEecccccccCCC--Cc---hHHHHHHHH
Q 000129 1432 -D-------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--GP---VLEVIVSRM 1491 (2114)
Q Consensus 1432 -~-------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~--liIiDEaH~l~~~~--g~---~le~i~srl 1491 (2114)
+ ...+...++.|- |++.+...++++... ..++ +||||=++.+.... .. .+..+...+
T Consensus 266 ~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~L 342 (444)
T 3bgw_A 266 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 342 (444)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHH
Confidence 1 112234456552 444555455554322 2578 99999999886432 11 233455566
Q ss_pred HHHHhhcCCCceEEEEccc
Q 000129 1492 RYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2114)
+.+...+ ++.+|++|-.
T Consensus 343 k~lAke~--~v~vi~lsql 359 (444)
T 3bgw_A 343 KKMAREL--DVVVIALSQL 359 (444)
T ss_dssp HHHHHHH--TCEEEEEEEC
T ss_pred HHHHHHh--CCeEEEEecC
Confidence 6665543 6778887764
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.79 Score=56.61 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=29.7
Q ss_pred cEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...|+ .....++..++..+......-.++.+-||
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 5889999999864321 23455666666666655555666677777
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.81 Score=55.28 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=18.7
Q ss_pred HHHHHHHHcCC---CcEEEEecCCCchHHHHH
Q 000129 1347 TQVFTVLYNTD---DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1347 ~q~~~~il~~~---~nvli~ApTGSGKTl~~~ 1375 (2114)
.+.+..++..+ ..+++++|+|+|||.++.
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34444444433 345777889999998773
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=89.03 E-value=1.2 Score=54.78 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr 1400 (2114)
.++.++|.||+|+|||..++..+.+.... ++ +++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~--~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG--TCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC--eEEEEECCC
Confidence 46779999999999998876555544332 34 788886544
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.31 Score=43.63 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=44.8
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHH-HHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~-~~~i~~~~~~ 1991 (2114)
+.|..|||||+.+.++|-++ +.|+.++.+++.++..++ ++... .+.|.++++.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~----Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSI--LGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHH----CSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHC
T ss_pred hHHHcCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhc
Confidence 56889999999999997654 569999999999999998 55666 7889998864
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.98 Score=57.82 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=32.0
Q ss_pred cEEEEecccccccCC----chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~r----g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...+ +..-..++..+++.+........++.+.||
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 689999999987533 444556667777777665556667777777
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=0.74 Score=50.94 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=27.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
.-.+++||.|||||.-.+-.+-+....+ .+++|+.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-----------~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQ-----------YKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEccc
Confidence 3468899999999987766666655443 378999887
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=1.5 Score=49.39 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=27.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
.-.++.||-|||||+.++-.+.+.... +. +++++.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~---g~--kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA---KQ--HAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEeccC
Confidence 345688999999998876665555443 33 8899999864
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=88.76 E-value=2.3 Score=51.60 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHH---cCC---CcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1342 FNPIQTQVFTVLY---NTD---DNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il---~~~---~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
+.|+|.+++..+. .++ ..+++.||.|+|||.++. .+.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 3577877766553 232 348999999999998874 3444443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=0.97 Score=53.12 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2114)
.+++++||+|+|||.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4799999999999988743
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=88.53 E-value=1.3 Score=49.79 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.++-++|.||+|+|||..+...+. .. ++ +++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~--~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS---GK--KVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH---CS--EEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc---CC--cEEEEEC
Confidence 466789999999999987755443 22 34 7787753
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=88.49 E-value=1.1 Score=54.49 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=24.3
Q ss_pred CHHHHHHHHHH---HcCCC---cEEEEccCCCchHHHHHHH
Q 000129 497 NRVQSRVYKSA---LSSAD---NILLCAPTGAGKTNVAVLT 531 (2114)
Q Consensus 497 ~~iQ~~~i~~~---l~~~~---nvlv~APTGsGKT~~a~l~ 531 (2114)
.|+|.+++..+ +.+++ .+|++||.|+|||..+...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 46666665543 33332 4899999999999887543
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=1.6 Score=55.75 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.7
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
....++++.||+|+|||+++-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 445679999999999998773
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=88.40 E-value=4.2 Score=43.87 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=18.9
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++++.||+|+|||.++. .+.+.+
T Consensus 43 ~~~vll~G~~G~GKT~la~-~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE-GLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHH
Confidence 5689999999999998774 333333
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=1.4 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
..++|.||+|+|||.++. .+.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~-~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR-LLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh
Confidence 368999999999998764 333433
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=88.29 E-value=0.67 Score=56.74 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.+..++|.||+|+|||..++..+...... ++ +++|+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeCC
Confidence 46779999999999999886655544433 34 78888764
|
| >2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.93 Score=42.77 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHh
Q 000129 1937 QLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 1990 (2114)
Q Consensus 1937 QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~ 1990 (2114)
-.|++++..++.|.++| |.|+.|++.+++.+..++++++-+...++.+.+.
T Consensus 8 ~~p~Lse~~~~~L~~~~---I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHR---IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLL 58 (83)
T ss_dssp SSTTCCHHHHHHHHHTT---CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34999999999999999 9999999999999999999999887766655443
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.96 E-value=0.67 Score=60.75 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
.+|.-|.+++..++.- ....++.|+-|.|||.+.-+.+-... . .+++.+|+.+-+....+ |...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--~------------~~~vtAP~~~a~~~l~~-~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--G------------RAIVTAPAKASTDVLAQ-FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--S------------CEEEECSSCCSCHHHHH-HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--h------------CcEEECCCHHHHHHHHH-HhhC
Confidence 6899999999987763 23578999999999977666554331 1 36899999986654332 2110
Q ss_pred hccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHH
Q 000129 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (2114)
.|-+..|+. +.. .....+++|||||=.+. -+.+..++
T Consensus 240 -------------------------~i~~~~Pd~---~~~------~~~~~dlliVDEAAaIp---~pll~~ll------ 276 (671)
T 2zpa_A 240 -------------------------KFRFIAPDA---LLA------SDEQADWLVVDEAAAIP---APLLHQLV------ 276 (671)
T ss_dssp -------------------------GCCBCCHHH---HHH------SCCCCSEEEEETGGGSC---HHHHHHHH------
T ss_pred -------------------------CeEEeCchh---hhh------CcccCCEEEEEchhcCC---HHHHHHHH------
Confidence 133445653 221 12347999999998875 33333222
Q ss_pred HhhccccccEEEEccccCChH
Q 000129 654 IETTKEHIRLVGLSATLPNYE 674 (2114)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~ 674 (2114)
.....|.||.|+..|+
T Consensus 277 -----~~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 277 -----SRFPRTLLTTTVQGYE 292 (671)
T ss_dssp -----TTSSEEEEEEEBSSTT
T ss_pred -----hhCCeEEEEecCCcCC
Confidence 1334588999988776
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=87.94 E-value=1.9 Score=52.04 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCC---cEEEEccCCCchHHHHH
Q 000129 499 VQSRVYKSALSSAD---NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~ 529 (2114)
...+.+..++..+. .+|+.+|+|+|||.++.
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34455555555433 35777889999998764
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.94 E-value=0.88 Score=54.75 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.3
Q ss_pred cEEEEecCCCchHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~ 1375 (2114)
++++.||+|+|||.++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998773
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.81 E-value=0.85 Score=56.40 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
+++|.||+|+|||.++. .+.+.+.. ..+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~---~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKD---KTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTT---SCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhh---hcCeeEEEEe
Confidence 79999999999998773 34444433 1022666665
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.70 E-value=0.9 Score=56.80 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred cEEEEecccccccCC-------chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~r-------g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+++|||+|.+...| ......++..++..+........++.+-||
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 588999999886432 234455666666666655455556666666
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=87.55 E-value=0.8 Score=51.98 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.-.+++||-|||||..++-.+.+....+ .+++++.|.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g-----------~kvli~kp~~D 58 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQ-----------YKCLVIKYAKD 58 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTT-----------CCEEEEEETTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-----------CeEEEEeecCC
Confidence 3467899999999998877766665432 37899999864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=87.49 E-value=1.5 Score=53.58 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt 1399 (2114)
.+..++|.||+|||||..+...+...... ++ +++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GG--IAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEECC
Confidence 46779999999999999876655544433 44 78887644
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.44 E-value=1.3 Score=57.41 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=16.0
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998874
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=87.27 E-value=0.66 Score=56.16 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
.++|++||+|+|||.++-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 479999999999998764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=87.21 E-value=1.5 Score=54.96 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=63.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
..++++||+|+|||+.+.-.+ ..+.. .++ +++++. +.|.-+.+....|.... |+.+.. .....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~--kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~--~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--RGY--KVGLVAADVYRPAAYDQLLQLGNQI----GVQVYG--EPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--TTC--CEEEEEECCSCHHHHHHHHHHHHTT----TCCEEC--CTTCS----
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCC--eEEEEecCccchhHHHHHHHHHHhc----CCceee--ccccC----
Confidence 357888999999998764333 23333 234 555544 55666666566555332 333321 11111
Q ss_pred ccCCcEEEEChhhHH-HHHhhhcccccccceeEEEeccccccc--CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH~l~--~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
.|..+. ..+.. ....+.+++|||++-++. .+. .++..+..+.....++.-++.++|+..
T Consensus 163 ---------dp~~i~~~al~~----a~~~~~DvvIIDTaGr~~~~~d~-----~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 163 ---------NPIEIAKKGVDI----FVKNKMDIIIVDTAGRHGYGEET-----KLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp ---------CHHHHHHHHHHH----TTTTTCSEEEEEECCCSSSCCTT-----HHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred ---------CHHHHHHHHHHH----HHhcCCCEEEEECCCCccccCCH-----HHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 122221 11221 112468999999997654 222 234444444444445566677777753
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.08 E-value=0.89 Score=56.98 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=27.5
Q ss_pred ccEEEEecccccccCC-------chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~r-------g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+|+|||+|.+...| .......+..++..+......-+++.+-||
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 3688999999886432 223445555666655544444444555566
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=86.97 E-value=1.3 Score=55.38 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2114)
..++++||+|+|||+.+.-.+.. +... +.+++++. +.+.-+.++...+... .|+.+. .....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~~~----------G~kVllv~~D~~r~~a~eqL~~~~~~---~gv~~~--~~~~~ 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YKKR----------GYKVGLVAADVYRPAAYDQLLQLGNQ---IGVQVY--GEPNN 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HHHT----------TCCEEEEEECCSCHHHHHHHHHHHHT---TTCCEE--CCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHc----------CCeEEEEecCccchhHHHHHHHHHHh---cCCcee--ecccc
Confidence 35788999999999876543332 2221 12455544 5566565655555543 344332 11111
Q ss_pred cChhhhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccc--cCCchhHHHHHHHHHHHHhhccccccEEE
Q 000129 590 LTRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2114)
Q Consensus 590 ~~~~~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg~~le~iv~rl~~~~~~~~~~~riv~ 665 (2114)
..|..+ +.+.. ......+++|||++-+++ ... .+ +..+........+..-++.
T Consensus 162 -------------~dp~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~--~l---m~el~~i~~~~~pd~vlLV 218 (433)
T 3kl4_A 162 -------------QNPIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEET--KL---LEEMKEMYDVLKPDDVILV 218 (433)
T ss_dssp -------------SCHHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTT--HH---HHHHHHHHHHHCCSEEEEE
T ss_pred -------------CCHHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCH--HH---HHHHHHHHHhhCCcceEEE
Confidence 123321 12221 112457999999998765 221 11 1222222222344556677
Q ss_pred EccccC
Q 000129 666 LSATLP 671 (2114)
Q Consensus 666 lSATlp 671 (2114)
++|+..
T Consensus 219 lDa~~g 224 (433)
T 3kl4_A 219 IDASIG 224 (433)
T ss_dssp EEGGGG
T ss_pred EeCccc
Confidence 888754
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=0.42 Score=45.32 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=46.2
Q ss_pred CccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000129 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2114)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2114)
+.|..+||||+...++|-++==+++.+...+.+||.++++ .+. ++.|++++|.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHHh
Confidence 5689999999999999987644789999999999999998 556 9999999974
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.92 E-value=1.2 Score=55.12 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=28.5
Q ss_pred cEEEEecccccccCC-------chhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~r-------g~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...| .......+..++..+......-.++.+-||
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 589999999886533 123445555666555554455566667677
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.81 E-value=0.88 Score=55.89 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..++|++||+|+|||.++-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987743
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=0.46 Score=45.07 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=44.7
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHH-HHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~-~~~i~~~~~~ 1991 (2114)
+.|..|||||+.+.++|-++ +.|+.+|.+++.++...+ ++.+. .+.|.+|++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~----FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSI--LGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHH----SSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHh
Confidence 45889999999999997764 679999999999999999 45666 7889999863
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.69 E-value=0.67 Score=56.95 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999998774
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.45 E-value=2.1 Score=52.06 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=19.6
Q ss_pred HHHHHHcCC--CcEEEEccCCCchHHHHH
Q 000129 503 VYKSALSSA--DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 503 ~i~~~l~~~--~nvlv~APTGsGKT~~a~ 529 (2114)
.+..++..+ .+++++||+|+|||..+.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 344444444 569999999999998764
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.41 E-value=2.2 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCC--cEEEEccCCCchHHHHHH
Q 000129 499 VQSRVYKSALSSAD--NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 499 iQ~~~i~~~l~~~~--nvlv~APTGsGKT~~a~l 530 (2114)
-..+.+..++.++. +++++||+|+|||.++..
T Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 32 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 33444444554433 699999999999987643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=86.36 E-value=1.5 Score=54.85 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=62.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEeCCCcc
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2114)
.+++++|+|+|||+++.-.+. .+... +.+++++. |.|+-+.++...+... .|+.+... +..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~~----------G~kVllv~~D~~R~aa~eqL~~~~~~---~gvpv~~~--~~~- 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQKR----------GYKVGVVCSDTWRPGAYHQLRQLLDR---YHIEVFGN--PQE- 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHTT----------TCCEEEEECCCSSTHHHHHHHHHHGG---GTCEEECC--TTC-
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHHC----------CCeEEEEeCCCcchhHHHHHHHHHHh---cCCcEEec--CCC-
Confidence 588999999999988654332 23221 22555554 6777677766666554 35544321 111
Q ss_pred ChhhhccceEEEcCHhHH--HHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 591 TRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 591 ~~~~~~~~~IiV~TPek~--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
..|..+ +.+... .-..++++|||.+=.++.. +.++..+........+..-++.++|
T Consensus 165 ------------~dp~~i~~~al~~a-----~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA 222 (443)
T 3dm5_A 165 ------------KDAIKLAKEGVDYF-----KSKGVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDG 222 (443)
T ss_dssp ------------CCHHHHHHHHHHHH-----HHTTCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred ------------CCHHHHHHHHHHHH-----HhCCCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeC
Confidence 123321 122111 1123789999999654321 1122222222222344556777888
Q ss_pred ccC
Q 000129 669 TLP 671 (2114)
Q Consensus 669 Tlp 671 (2114)
|..
T Consensus 223 ~~g 225 (443)
T 3dm5_A 223 TIG 225 (443)
T ss_dssp GGG
T ss_pred CCc
Confidence 864
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=86.36 E-value=4.3 Score=49.70 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (2114)
.++++||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.29 E-value=2.3 Score=50.54 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
..+++++||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998764
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=86.25 E-value=1.2 Score=54.12 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=72.5
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCC
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd 587 (2114)
+..++-++|.|++|+|||..++-.+.+.... +.+++|+..--. ..|+..++.......+..- ...|.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-----------g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~-l~~g~ 109 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND-----------DRGVAVFSLEMS-AEQLALRALSDLTSINMHD-LESGR 109 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSSC-HHHHHHHHHHHHHCCCHHH-HHHTC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHH-HhcCC
Confidence 4556778999999999998876666555442 126777754322 3444444433221111100 01122
Q ss_pred CccCh-h-------hhccceEEE-cCH----hHHHHHHhccCCCcccc-cccEEEEeccccccc-----CCchhHHHHHH
Q 000129 588 QTLTR-Q-------QIEETQIIV-TTP----EKWDIITRKSGDRTYTQ-LVKLLIIDEIHLLHD-----NRGPVLESIVA 648 (2114)
Q Consensus 588 ~~~~~-~-------~~~~~~IiV-~TP----ek~d~l~r~~~~~~~l~-~v~liIiDEaH~l~d-----~rg~~le~iv~ 648 (2114)
.+... + ......+.| .+| +.+....|+.. .-. .+++||||-+++|.. .+...+..+..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~---~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr 186 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK---SQHKELGIAFIDYLQLMSGSKATKERHEQIAEISR 186 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH---HHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH---HhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHH
Confidence 11110 0 112334544 344 33322222211 111 589999999999854 23344555555
Q ss_pred HHHHHHhhccccccEEEEccc
Q 000129 649 RTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 649 rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+..... ..++.+|++|-.
T Consensus 187 ~LK~lAk--el~vpVi~lsQl 205 (338)
T 4a1f_A 187 ELKTLAR--ELEIPIIALVQL 205 (338)
T ss_dssp HHHHHHH--HHTSCEEEEEEC
T ss_pred HHHHHHH--HcCCeEEEEEec
Confidence 5543333 246777777765
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=86.18 E-value=1.8 Score=55.05 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=26.5
Q ss_pred ccEEEEecccccccCCch-------hHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRGP-------VLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg~-------~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
..+|+|||+|.+...++. ..+..+..++..+........++.+.||
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 469999999998764432 2234455555544433334456666666
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=86.00 E-value=0.63 Score=53.62 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC-------CCcEEEEEcCC
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG-------LGMRVVELTGE 1428 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~-------~g~~v~~l~G~ 1428 (2114)
.+..++|+|++|+|||..+...+.+.+... +. +++|+.-. .-..++.+++. .++.. ..+.+......
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~--~v~~~s~E-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~ 102 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE--PGVFVTLE-ERARDLRREMA-SFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC--CEEEEESS-SCHHHHHHHHH-TTTCCHHHHHHTTSEEEEC----
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC--Cceeeccc-CCHHHHHHHHH-HcCCChHHHHhcCcchhhhhHHH
Confidence 467899999999999988766555544441 23 56776533 22344444443 12110 01111111000
Q ss_pred cccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccC--CCCchHHHHHHHHHHHHhhcCCCceEEE
Q 000129 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2114)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~--~~g~~le~i~srl~~i~~~~~~~~riV~ 1506 (2114)
..............-.+++.+....+.. ..-...+++|+|-...+.. .....+..++..++.+.... ++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~--~i~vi~ 177 (251)
T 2zts_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRV---VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTIL 177 (251)
T ss_dssp ---------------CCHHHHHHHHHHH---HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEE
T ss_pred HhhcccchhccccccccHHHHHHHHHHH---HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc--CCCeEE
Confidence 0000000000001112223332222221 1223568999999986642 23344555666666665543 566666
Q ss_pred Ecc
Q 000129 1507 LST 1509 (2114)
Q Consensus 1507 lSA 1509 (2114)
++-
T Consensus 178 ~~q 180 (251)
T 2zts_A 178 TTE 180 (251)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.66 E-value=1 Score=54.43 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.3
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
...+++.||+|+|||..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3579999999999998773
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=1.9 Score=52.90 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998873
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.53 E-value=1.9 Score=50.09 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999998774
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=85.51 E-value=1.2 Score=58.57 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000129 1341 HFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~-~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g 1419 (2114)
.+|.-|.+++..++.- ....+|.|+-|.|||.+.-+++-. +. + ++++.+|+.+-+....+ +. +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----~--~~~vtAP~~~a~~~l~~-~~---~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----G--RAIVTAPAKASTDVLAQ-FA---GE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----S--CEEEECSSCCSCHHHHH-HH---GG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----h--CcEEECCCHHHHHHHHH-Hh---hC---
Confidence 6899999999998762 345789999999999766555542 21 2 46999999887764433 21 10
Q ss_pred cEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC
Q 000129 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2114)
Q Consensus 1420 ~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~ 1499 (2114)
.|-+..|..+ .. .....+++|||||=.+. +..++.+..
T Consensus 240 --------------------~i~~~~Pd~~---~~------~~~~~dlliVDEAAaIp----------~pll~~ll~--- 277 (671)
T 2zpa_A 240 --------------------KFRFIAPDAL---LA------SDEQADWLVVDEAAAIP----------APLLHQLVS--- 277 (671)
T ss_dssp --------------------GCCBCCHHHH---HH------SCCCCSEEEEETGGGSC----------HHHHHHHHT---
T ss_pred --------------------CeEEeCchhh---hh------CcccCCEEEEEchhcCC----------HHHHHHHHh---
Confidence 1334456542 11 23458999999999885 222333322
Q ss_pred CCceEEEEcccCCCh
Q 000129 1500 NKIRIVALSTSLANA 1514 (2114)
Q Consensus 1500 ~~~riV~lSATl~n~ 1514 (2114)
....|+||.|+...
T Consensus 278 -~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 278 -RFPRTLLTTTVQGY 291 (671)
T ss_dssp -TSSEEEEEEEBSST
T ss_pred -hCCeEEEEecCCcC
Confidence 34458888888543
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=85.45 E-value=2.9 Score=49.94 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=52.7
Q ss_pred CCCceEEEechHhhhhcC-----CCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCC--CCCceEEEEEcCCCc
Q 000129 818 DGHVQVLVSTATLAWGVN-----LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ--YDSYGEGIIITGHSE 890 (2114)
Q Consensus 818 ~g~i~VLVaT~tla~GVd-----lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g--~d~~G~~iil~~~~e 890 (2114)
+....+.+.|+...-|+| +-+.++||-++.-+||.. +.+|.+-||-|.| ..+.-.+|.+++...
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTS
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 455566565766666676 566777887666666654 5677666776653 245667888888776
Q ss_pred HHHHHHhhcCCCcccchhhHhhHHHHHHHHhh
Q 000129 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922 (2114)
Q Consensus 891 ~~~~~~ll~~~~pies~l~~~l~d~l~~ei~~ 922 (2114)
.+...-.+... .++.-...+...+++-+++
T Consensus 239 iEh~~l~~~~~--~~~~~~~~l~k~i~a~v~l 268 (328)
T 3hgt_A 239 IDHCRLFFGKK--FDKNSREYLENVTAAMVIL 268 (328)
T ss_dssp HHHHHHHHHHH--TCTTCHHHHHHHHHHHHHG
T ss_pred HHHHHHHccCC--CCcchHHHHHHHHHHHHHH
Confidence 66554333221 1233334555666665544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=85.34 E-value=2 Score=49.12 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhcc---CCCceEEEEEccc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPL 1399 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~---~~~~~k~l~I~Pt 1399 (2114)
.++.++|.||+|+|||..+...+...+.... ..+ .++|+.-.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~--~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG--KAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSS--EEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCC--eEEEEECC
Confidence 4677999999999999887554443222100 123 67887543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.34 E-value=1.9 Score=53.22 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHH
Q 000129 513 NILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2114)
+++++||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998764
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.30 E-value=1.3 Score=53.92 Aligned_cols=43 Identities=33% Similarity=0.288 Sum_probs=29.2
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La 1403 (2114)
.+..++|.+|+|||||..+...+.. +.. .++ +++|+.....+-
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~-~~~--~gg--~VlyId~E~s~~ 102 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE-AQK--MGG--VAAFIDAEHALD 102 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH-HHH--TTC--CEEEEESSCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh--cCC--eEEEEecccccc
Confidence 3567899999999999877544433 332 244 788887655443
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.28 E-value=3.7 Score=50.62 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 181 ~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCCEEEESCSSSSHHHHH
T ss_pred CCCceEEeCCCCCCHHHHH
Confidence 3456999999999999876
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=0.77 Score=53.96 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.4
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..++++.||+|+|||.++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4579999999999998874
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=85.11 E-value=2.7 Score=48.67 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
..+++++||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=85.08 E-value=2.2 Score=54.13 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.0
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
+..++-++|.||+|+|||..++..+.....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445677899999999999887666655544
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.06 E-value=0.96 Score=56.61 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=27.7
Q ss_pred cEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...|+ ......+..++..+......-+++.+-||
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 5899999998865331 23344555566655554455556666666
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.05 E-value=1.8 Score=54.13 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~ 1435 (2114)
..++++|++|+|||+.+.- +...+.. .+. +++++. |.|.-+.++...|.... |+.+.... ..
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--~G~--kVllv~~D~~R~aa~eqL~~~~~~~----gvpv~~~~--~~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--RGY--KVGVVCSDTWRPGAYHQLRQLLDRY----HIEVFGNP--QE----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--TTC--CEEEEECCCSSTHHHHHHHHHHGGG----TCEEECCT--TC-----
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--CCC--eEEEEeCCCcchhHHHHHHHHHHhc----CCcEEecC--CC-----
Confidence 3578899999999987633 2333433 233 555554 66777777677666432 44443211 11
Q ss_pred ccCCcEEEEChhhHH-HHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
..|..+. ..+.... -..++++|||.+=.+..+ +.+...++.+.....+..-++.++||..
T Consensus 165 --------~dp~~i~~~al~~a~----~~~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 --------KDAIKLAKEGVDYFK----SKGVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp --------CCHHHHHHHHHHHHH----HTTCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------CCHHHHHHHHHHHHH----hCCCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 1232221 1222211 134789999998544321 1244444444444445566777888764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=84.95 E-value=1.3 Score=53.32 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=33.4
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+..++-++|+|++|+|||..++..+.+...++ .+++|+.-- .-..|+..++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-----------~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-----------CEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEECC-CCHHHHHHHHH
Confidence 44567799999999999988776665554332 268888643 22344444443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.80 E-value=1.2 Score=53.01 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.1
Q ss_pred CCCcEEEEecCCCchHHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~ 1375 (2114)
...++++.||+|+|||.++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 35689999999999998773
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.77 E-value=1.2 Score=53.35 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=15.1
Q ss_pred cEEEEecCCCchHHHHH
Q 000129 1359 NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~ 1375 (2114)
++++.||+|+|||.++.
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999998774
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=84.66 E-value=1.1 Score=53.33 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=55.0
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhccC
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~~ 1438 (2114)
.++|.+|+|+|||..++..+.+.... ..++ +++|+....++.... ++ +++ +. .
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~--~vlyId~E~s~~~~r---a~-~lG----vd----------------~ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDA--VCLFYDSEFGITPAY---LR-SMG----VD----------------P 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTC--EEEEEESSCCCCHHH---HH-HTT----CC----------------G
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCc--eEEEEeccchhhHHH---HH-HhC----CC----------------H
Confidence 58999999999999987776665543 2244 899998776664332 22 443 21 0
Q ss_pred CcEEEEChhhHHHH----HhhhcccccccceeEEEeccccccc
Q 000129 1439 GQIIISTPEKWDAL----SRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1439 ~~IIV~TPe~l~~l----~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
.+++++.|.....+ ...... ..-..+++||||=+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccc
Confidence 13555555444333 222100 111358999999999774
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=84.64 E-value=5.1 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (2114)
.++.+++.||+|||||..+...+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999876554433
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.58 E-value=1.7 Score=52.04 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000129 502 RVYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 502 ~~i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (2114)
+.+..++..+ .+++++||+|+|||..+..
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 3444445443 3599999999999987643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.57 E-value=2.7 Score=51.67 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2114)
..+++++||+|+|||..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999987644
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=84.54 E-value=1.8 Score=49.09 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
+.-.++.||-|||||+.++-.+.+.... +. +++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~--kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TC--CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CC--eEEEEeecCC
Confidence 3446788999999998876666655433 33 8899998764
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.42 E-value=1.6 Score=54.57 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=28.0
Q ss_pred ccEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 624 v~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
-.+|+|||++.+...|+ ......+..++..+......-.++.+-||
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 36899999998865331 22333444555555544455567777777
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.96 E-value=2.6 Score=51.72 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~ 1397 (2114)
..+++|.||+|+|||..+.. +.+.+...... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~-~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLG-KFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHHHHHTCS-SCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhcC-CceEEEEE
Confidence 56799999999999987743 44444331110 22566665
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=83.62 E-value=0.98 Score=55.45 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
.++|++||+|+|||.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998874
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=83.44 E-value=2.9 Score=52.95 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=22.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHH
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
+..++-++|+|++|+|||..++..+.....
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 445677899999999999877666655544
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.38 E-value=1.6 Score=53.10 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.7
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
.++++.||+|+|||.++.
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999998773
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.35 E-value=1.2 Score=53.37 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.6
Q ss_pred cCCCcEEEEecCCCchHHHHH
Q 000129 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.....+++.||+|+|||.++-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 345679999999999998773
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.32 E-value=1 Score=53.90 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2114)
....++++||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 45679999999999998764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=83.30 E-value=2.3 Score=50.57 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.6
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
..+++.||+|+|||..+.
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998774
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=83.11 E-value=3.1 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.0
Q ss_pred CCCcEEEEccCCCchHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTIL 533 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il 533 (2114)
.++-+++.||+|+|||..+...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988765544
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.06 E-value=3.9 Score=48.88 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=26.4
Q ss_pred cccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
......+++||||+|.|.. ... ..+++.++..++...+|+.+
T Consensus 78 p~~~~~kvviIdead~lt~---~a~----naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQ---QAA----NAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp CSSSSSEEEEETTGGGBCH---HHH----HHTHHHHHSCCTTEEEEEEE
T ss_pred cccCCceEEEeccHHHhCH---HHH----HHHHHHHhCCCCCeEEEEEE
Confidence 3445679999999999852 222 23445556555566666654
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=82.87 E-value=1.7 Score=48.68 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=26.5
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHH
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~ 1401 (2114)
+.-.++.||-|||||+..+-.+.+.... +. +++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~--kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQ--KVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CC--ceEEEEeccC
Confidence 4557889999999998665444443322 33 7899999764
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=2.1 Score=47.38 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=32.8
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000129 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (2114)
....++++..++|.|||.+|+-..++.+..+ .+++++.-.+
T Consensus 26 ~~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-----------~rV~~vQF~K 66 (196)
T 1g5t_A 26 EERGIIIVFTGNGKGKTTAAFGTAARAVGHG-----------KNVGVVQFIK 66 (196)
T ss_dssp -CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-----------CCEEEEESSC
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEEeeC
Confidence 3456899999999999999998888888764 3788886555
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=82.06 E-value=5 Score=47.59 Aligned_cols=48 Identities=8% Similarity=0.251 Sum_probs=26.4
Q ss_pred cccceeEEEecccccccCC-----CCchHHHHHHHHHHHHhhcCCCceEEEEccc
Q 000129 1461 YVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1461 ~l~~v~liIiDEaH~l~~~-----~g~~le~i~srl~~i~~~~~~~~riV~lSAT 1510 (2114)
...+.++||+||...+.+. .......+...++.+.... ++-+|++|-.
T Consensus 144 ~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~--~~~vi~vsh~ 196 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST--GVVLVVICHL 196 (296)
T ss_dssp HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHH--CCEEEEEEEC
T ss_pred HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHh--CCeEEEEEec
Confidence 3457899999999976421 1133445666666664432 4556666554
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.04 E-value=1.8 Score=63.51 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHc-----CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1350 FTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1350 ~~~il~-----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
++.++. .+.++++++|+|+|||..+...+...... +. +++|+.....+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~--~v~Fi~~e~~~~~l 1470 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDAEHALDPI 1470 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TC--CEEEECTTSCCCHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--cEEEEEcccccCHH
Confidence 666655 57899999999999999886555544432 44 88998876544333
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=81.80 E-value=6.7 Score=46.02 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.4
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHH
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAIL 1379 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il 1379 (2114)
+..++.++|.||+|||||+.+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34577799999999999988755444
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=81.66 E-value=3.1 Score=47.70 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
..+..++++|++|+|||..++..+.+...... .+++|+.-.-. ..++.+++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~----------~~v~~~s~E~~-~~~~~~~~~ 79 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG----------EPGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC----------CCEEEEESSSC-HHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC----------CCceeecccCC-HHHHHHHHH
Confidence 34677999999999999988776666554431 14777653322 344444443
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=81.57 E-value=4.9 Score=48.54 Aligned_cols=19 Identities=47% Similarity=0.836 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAVL 530 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2114)
.+++++||+|+|||.++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999987643
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=81.43 E-value=0.61 Score=55.96 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHcCCC--cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1343 NPIQTQVFTVLYNTDD--NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~~--nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.+...+.+...+..+. ++++.||+|+|||.++ ..+.+.+....... ..+.+.+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la-~~l~~~l~~~~~~~--~~~~~~~~~-------------------- 78 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA-IALARDLFGENWRD--NFIEMNASD-------------------- 78 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHH-HHHHHHHHTTCHHH--HCEEEETTS--------------------
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHH-HHHHHHhcCCcccC--CeEEEeCcc--------------------
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccc--cceeEEEecccccccCCCCchHHHHHHHHHHHHhhc
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~ 1498 (2114)
....+.+............+ ....++|+||+|.+... ....+..+....
T Consensus 79 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------~~~~L~~~le~~ 129 (319)
T 2chq_A 79 ----------------------ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------AQAALRRTMEMY 129 (319)
T ss_dssp ----------------------TTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------HHHTTGGGTSSS
T ss_pred ----------------------ccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------HHHHHHHHHHhc
Q ss_pred CCCceEEEEc
Q 000129 1499 ENKIRIVALS 1508 (2114)
Q Consensus 1499 ~~~~riV~lS 1508 (2114)
+...++|+.+
T Consensus 130 ~~~~~~i~~~ 139 (319)
T 2chq_A 130 SKSCRFILSC 139 (319)
T ss_dssp SSSEEEEEEE
T ss_pred CCCCeEEEEe
|
| >1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A | Back alignment and structure |
|---|
Probab=81.35 E-value=0.81 Score=41.71 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=49.0
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
|.+.+||+...+++|...| +.|+.++...+.++...+-++++....++.+.++.+
T Consensus 8 f~~~lgI~e~~a~~L~~~G---f~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEG---FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTT---CCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcC---cCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 5677899999999999999 999999999999988888889999999988777643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.29 E-value=2.7 Score=51.13 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--cEEEEecCCCchHHHHH
Q 000129 1349 VFTVLYNTDD--NVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1349 ~~~~il~~~~--nvli~ApTGSGKTl~~~ 1375 (2114)
.+...+..++ ++++.||+|+|||.++.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3444444443 38999999999998774
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=81.28 E-value=4.3 Score=50.47 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCcEEE--EecCCCchHHHHHH
Q 000129 1357 DDNVLV--AAPTGSGKTICSEF 1376 (2114)
Q Consensus 1357 ~~nvli--~ApTGSGKTl~~~l 1376 (2114)
..+++| .||+|+|||.++..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 457888 89999999987743
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=1.9 Score=52.22 Aligned_cols=131 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccC-----CCceEEEEEcccHHHHHHHHHHHHHHhcCCC-----CcEEE
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPLEALAKERYRDWEIKFGQGL-----GMRVV 1423 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~-----~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~-----g~~v~ 1423 (2114)
+..+..++|.||+|||||..+...+...... . ++ +++|+.-...+-.+....+.++++-.. .+.+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~--~~~gg~~~--~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~- 178 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLP--PEKGGLSG--KAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYY- 178 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC--GGGTCCSC--EEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE-
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcc--cccCCCCC--eEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEE-
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccc-cceeEEEecccccccC----------CCCchHHHHHHHHH
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV-QQVSLFIIDELHLIGG----------QGGPVLEVIVSRMR 1492 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l-~~v~liIiDEaH~l~~----------~~g~~le~i~srl~ 1492 (2114)
.-..+.+.+..++........- .++++||||.+..+.. .+...+..++..++
T Consensus 179 -----------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~ 241 (324)
T 2z43_A 179 -----------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLT 241 (324)
T ss_dssp -----------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHH
T ss_pred -----------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCceEEEEc
Q 000129 1493 YIASQVENKIRIVALS 1508 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lS 1508 (2114)
.+.... ++-+|+.+
T Consensus 242 ~la~~~--~~~Vi~~n 255 (324)
T 2z43_A 242 RLAEVY--DIAVIITN 255 (324)
T ss_dssp HHHHHH--TCEEEEEE
T ss_pred HHHHHh--CCEEEEEc
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=81.18 E-value=2.4 Score=51.66 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccccCC--CCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc
Q 000129 1143 PLRQFN--GIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2114)
Q Consensus 1143 ~l~q~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2114)
|+.+++ |+++..+.+|.++|+ +++++...++.+|.++.+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~ 67 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKG 67 (343)
T ss_dssp ------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhC
Confidence 677777 899999999999997 566666667777666544
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.18 E-value=14 Score=44.38 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchHHHHH
Q 000129 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1344 ~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~ 1375 (2114)
.-+.+.+.. +.. ..++|.||.|+|||....
T Consensus 19 ~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 19 EKEIEKLKG-LRA-PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp HHHHHHHHH-TCS-SEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHH-hcC-CcEEEECCCCCCHHHHHH
Confidence 334444445 554 579999999999997664
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.15 E-value=5.5 Score=49.74 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=16.3
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456999999999999877
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.07 E-value=3.1 Score=52.05 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCCchHHHH
Q 000129 1356 TDDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~ 1374 (2114)
....+|+.||+|+|||+.+
T Consensus 214 ~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3467999999999999877
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.00 E-value=4.2 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=17.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHh
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
++++.||+|+|||..+- .+...+
T Consensus 38 ~~ll~Gp~G~GKTtl~~-~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM-ALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHH-THHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 49999999999998763 344433
|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
Probab=80.86 E-value=0.61 Score=46.88 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=51.6
Q ss_pred ccccCC--CCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1934 MLLQLP--HFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1934 ~L~QLP--~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
++-.|| ||++..+++|.++| +.|+.++..+++.+...+-++++....+|.+.++.+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG---~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAG---FHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTC---CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred cHHHHHhcCCCHHHHHHHHHcC---cCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 566777 99999999999999 999999999999998888999999999999999875
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=80.75 E-value=6.3 Score=47.88 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=20.3
Q ss_pred HHHHHHHHH-cCC--CcEEEEccCCCchHHHHH
Q 000129 500 QSRVYKSAL-SSA--DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 500 Q~~~i~~~l-~~~--~nvlv~APTGsGKT~~a~ 529 (2114)
..+.+..++ ..+ .+++++||+|+|||..+-
T Consensus 22 ~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 334444444 332 359999999999998764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=80.74 E-value=1.7 Score=53.43 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
.+..++|.||+|+|||..++..+......+ .+++|+..-.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g-----------~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG-----------GTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC-----------CeEEEEECCCC
Confidence 456789999999999988776665554322 25788765443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=80.55 E-value=2.4 Score=53.50 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=29.9
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
+..++-++|+|++|+|||..++..+.+....+ .+++|++-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g-----------~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT-----------CEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC-----------CEEEEEEC
Confidence 45567799999999999998877776665432 26888764
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.44 E-value=1 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHcCCCcEEEEccCCCchHHHHH
Q 000129 507 ALSSADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~ 529 (2114)
+...+.++++.||+|+|||.++-
T Consensus 20 ~a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHHHH
T ss_pred HhCCCCCEEEECCCCCCHHHHHH
Confidence 34567789999999999998874
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.44 E-value=2.1 Score=54.19 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.9
Q ss_pred CcEEEEecCCCchHHHHH
Q 000129 1358 DNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~ 1375 (2114)
.++++.||+|+|||.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998874
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=80.35 E-value=2.1 Score=51.57 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=36.3
Q ss_pred ccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcCc
Q 000129 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP 1183 (2114)
Q Consensus 1143 ~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 1183 (2114)
+|..++|+++..+++|.++|+ +++++...++.+|.++.+.+
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis 45 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGIS 45 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCC
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcC
Confidence 688899999999999999998 78999999999999887754
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=80.21 E-value=3.8 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.4
Q ss_pred cEEEEecCCCchHHHHHHHHHHHh
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
.+++.||+|+|||.++. .+.+.+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 48999999999998874 334444
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.20 E-value=2.9 Score=46.91 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000129 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (2114)
+.-.++++|-|||||...+-.+.+.... +.+++++.|.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-----------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-----------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCceEEEEeccC
Confidence 3446889999999998766555444332 236899999764
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.04 E-value=3.3 Score=51.39 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.0
Q ss_pred CCcEEEEecCCCchHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~ 1374 (2114)
...+|+.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 466999999999999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2114 | ||||
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 4e-60 | |
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 2e-44 | |
| d2q0zx2 | 114 | b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo | 4e-48 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 5e-30 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 3e-28 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 9e-17 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-16 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 2e-16 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 2e-07 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 1e-13 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 7e-07 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 8e-12 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 4e-10 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-11 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 3e-09 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 8e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 4e-08 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-05 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-08 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-06 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 2e-06 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 7e-04 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 5e-06 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-05 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-05 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 6e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 0.002 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-04 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-04 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 4e-04 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 201 bits (513), Expect = 4e-60
Identities = 98/179 (54%), Positives = 132/179 (73%), Gaps = 3/179 (1%)
Query: 1815 TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHF 1874
T+++GL+E++++A+EY +PIR E+ ++R+L NPKF DPHVK N LLQAH
Sbjct: 1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHL 60
Query: 1875 SRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSM 1934
SR Q+ L+ D EE+L A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW +DS
Sbjct: 61 SRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSY 120
Query: 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFP 1993
L QLPHF + KRC + K +E+VFD++EMED+ER LLQ++D Q+ D+ARFCNR+P
Sbjct: 121 LKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (397), Expect = 2e-44
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLK 1086
L + S + E++ + +R E L +L +VP + +P K N+LLQA++S+++
Sbjct: 5 GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 64
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
L L SD I A RL++A +++ GW A A+ L++MVT+ MWS + L+Q
Sbjct: 65 LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQ 123
Query: 1147 FNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQFP 1197
+E + + K + ++ +E L++ + +F +++P
Sbjct: 124 LPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 165 bits (419), Expect = 4e-48
Identities = 64/118 (54%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 1994 NIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTK 2053
NI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEGWW+V+GD K
Sbjct: 1 NIELSYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAK 57
Query: 2054 TNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2111
+N L++IKR++LQ+K++VKLDF AP G YTLYFM D+YMGCDQEY F+VDVKEA
Sbjct: 58 SNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 114
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 116 bits (292), Expect = 5e-30
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 697 PVPLSQQ-YIGIQVKKPLQRFQLMNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAI 753
PVPL + ++ F + +E++V VA VL+F +R+ KTA +
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
++++ + + + IL+ + + S L + + G A HHAG+ G R++VE
Sbjct: 61 SAI------TAKYVENEGLEKAILEEN-EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVE 113
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
D F G+++V+V+T TLA GVNLPA VI++ ++ G + + QM GRAGR
Sbjct: 114 DAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGR 170
Query: 874 PQYDSYGEGIIITGHSELRYYL 895
P D GE III G + +
Sbjct: 171 PGMDERGEAIIIVGKRDREIAV 192
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 111 bits (278), Expect = 3e-28
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 11/204 (5%)
Query: 1537 PVPLEIHIQ-GVDITNFEARMQAMTKPTFTAIV-QHAKNEKPALVFVPSRKYVRLTAVDL 1594
PVPL + + F+ + F +V + LVF +R+ TAV L
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
++ + + E + L +R G + H GL + VV
Sbjct: 61 SAITAKYVENEGLEKAILEEN-----EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDA 115
Query: 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
F G IKV V + ++ GV L A V+V +DG V++ QM G A RP
Sbjct: 116 FRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPG 172
Query: 1715 LDNSGKCVILCHAPRKEY-YKKFL 1737
+D G+ +I+ +E K+++
Sbjct: 173 MDERGEAIIIVGKRDREIAVKRYI 196
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.9 bits (193), Expect = 9e-17
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 32/227 (14%)
Query: 477 IKISEMPEWAQPAF------KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
+K+ E+ E +G+ +L Q+ + S N+LL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEM 59
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
++++ K +YV P++AL E + ++ ++
Sbjct: 60 AMVREA-----------IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR 108
Query: 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVAR 649
+ I+ T+ + +I ++ L++DEIHLL RG LE +V +
Sbjct: 109 DEHLGDCDIIVTTSEKADSLIRNRASWIKAV---SCLVVDEIHLLDSEKRGATLEILVTK 165
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
+ + +R++GLSAT PN ++A +L + + + +R
Sbjct: 166 ----MRRMNKALRVIGLSATAPNVTEIAEWLDADY------YVSDWR 202
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.5 bits (192), Expect = 1e-16
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 1326 ALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384
++ + L +G + P Q + +++ N+L+A PT +GKT+ +E A++R K
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK 67
Query: 1385 ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444
+++Y+ PL ALA E+Y ++ GL + + TG+ + L II++
Sbjct: 68 -----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS--TGDYESRDEHLGDCDIIVT 120
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIR 1503
T EK D+L + +++ VS ++DE+HL+ + G LE++V++MR + + R
Sbjct: 121 TSEKADSL--IRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL----R 174
Query: 1504 IVALSTSLANAKDLGEWIGA 1523
++ LS + N ++ EW+ A
Sbjct: 175 VIGLSATAPNVTEIAEWLDA 194
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.1 bits (182), Expect = 2e-16
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 904 IESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKED 961
I S+ + L + I G + +E ++ T+ + + +
Sbjct: 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------- 48
Query: 962 ITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI 1008
+ + L+ +V T LG + S YI
Sbjct: 49 -------SYELERVVRQLENWGMVVEAAH---LAPTKLGSLVSRLYI 85
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.3 bits (115), Expect = 2e-07
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 1753 HRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799
+ LS +E + LE ++ L+P+ G + S YI
Sbjct: 41 FKQNEISLSYELERVVRQLENWGMVVE--AAHLAPTKLGSLVSRLYI 85
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 69.7 bits (169), Expect = 1e-13
Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
E+L+L+ L+ G++ F P Q ++ + + D LV PTG GK++C
Sbjct: 4 AEVLNLESGAKQVLQE------TFGYQQFRPGQEEIIDTVLSGRD-CLVVMPTGGGKSLC 56
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+ L + V ++PL +L K++ + + + + +
Sbjct: 57 YQIPALLLN--------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM 108
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493
GQI + + + + L +DE H I G + +
Sbjct: 109 TGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168
Query: 1494 IASQVENKIRIVALSTSLANA--KDLGEWIG 1522
Q + +AL+ + + +D+ +G
Sbjct: 169 R--QRFPTLPFMALTATADDTTRQDIVRLLG 197
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 50.0 bits (118), Expect = 7e-07
Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 20/195 (10%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G Q Q + + LS D L+ PTG GK+ + L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRD-CLVVMPTGGGKSLCYQIPALLLNG-------------- 66
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS-GDQTLTRQQIEETQIIVTTPEKWDI 610
V V+P+ +L+ + V L + Q QI + +
Sbjct: 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERL 126
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
+ + LL +DE H + + Q+ + + L+AT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATA 184
Query: 671 PNY--EDVALFLRVN 683
+ +D+ L +N
Sbjct: 185 DDTTRQDIVRLLGLN 199
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.3 bits (156), Expect = 8e-12
Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 12/171 (7%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L + + A+ +GF+ IQ +V + N + N++ A TGSGKT ++ +
Sbjct: 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIII 1443
+ + + D +++ ++ G A+ +K L+ I++
Sbjct: 71 NGIEAIILTPTRE----LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVV 126
Query: 1444 STPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + D ++R ++ V FI+DE + G +E I++
Sbjct: 127 GTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 59.3 bits (143), Expect = 4e-10
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
KG + +Q +V L+ NI+ A TG+GKT + +++ ++
Sbjct: 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL---------VNENNG 72
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK- 607
+ + + P + L +V + + ++K+ ++ G + + Q ++ I+V TP +
Sbjct: 73 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRI 132
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIH-LLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666
D I R + + + VK I+DE +L+ +E I+ + +
Sbjct: 133 LDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI-------LLF 182
Query: 667 SATLPN 672
SAT+P
Sbjct: 183 SATMPR 188
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 64.9 bits (157), Expect = 2e-11
Identities = 49/376 (13%), Positives = 88/376 (23%), Gaps = 103/376 (27%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
++ GAGKT + I+++ + + +AP + + AE+
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEM 54
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
L Y + + + + + + L
Sbjct: 55 EEALRGLPIRYQT--------PAIRAEHTGREIVDLMCHATFTMRLLSPIRVPN---YNL 103
Query: 627 LIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+I+DE H SI AR + ++AT P D
Sbjct: 104 IIMDEAHFTDPA------SIAARGYISTRVEMGEAAGIFMTATPPGSRD----------- 146
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
F S P+ ++ I + + K + + FV S K
Sbjct: 147 ---PFPQSNAPIMDEEREIPERSWNSGHEWVTDF------------KGKTVWFVPSIKAG 191
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A +R
Sbjct: 192 NDIAACLRK-------------------------------------NGKKVIQLSRKTFD 214
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI-----YNPEKGAWTE--- 858
+ +V+T G N A VI + + E+
Sbjct: 215 SEYIKTR----TNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPM 270
Query: 859 -LSPLDIMQMLGRAGR 873
++ Q GR GR
Sbjct: 271 PVTHSSAAQRRGRVGR 286
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 49.1 bits (116), Expect = 3e-06
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
++ G+GKT AI+ ++A + G+ R + +AP +A E +
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIV---REAIKRGL-RTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
+ + + + R V +L I+DE H
Sbjct: 66 QTPAIRAEHTGREIV---------DLMCHA---TFTMRLLSPIRVPNYNLIIMDEAHFTD 113
Query: 1478 GQGGPVLEVI 1487
I
Sbjct: 114 PASIAARGYI 123
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 57.2 bits (137), Expect = 3e-09
Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 20/206 (9%)
Query: 482 MPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRN 541
+ E+ + K + + +Q K L ++ APTG GKT+ + L
Sbjct: 30 LKEFVEFFRKCVGEPRAIQKMWAKRILRK-ESFAATAPTGVGKTSFGLAMSLFLA----- 83
Query: 542 DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQII 601
+ + P LV + + + V L G + E+ +
Sbjct: 84 ------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 137
Query: 602 VTTPEKWDIIT---RKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA-----RTVRQ 653
+IT S + +D++ + V + + +
Sbjct: 138 QNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTK 197
Query: 654 IETTKEHIRLVGLSATLPNYEDVALF 679
+ L+ +AT + LF
Sbjct: 198 SWVGEARGCLMVSTATAKKGKKAELF 223
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 49.9 bits (118), Expect = 8e-07
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 15/198 (7%)
Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
L P L E + IQ + + APTG GKT
Sbjct: 21 LCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKES-FAATAPTGVGKTSFGLAMS 79
Query: 1379 LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438
L K R I P L + K+ + G+ L G + EK
Sbjct: 80 LFLALK-----GKRCYVIFPTSLLVIQAAETIR-KYAEKAGVGTENLIGYYHGRIPKREK 133
Query: 1439 GQIIISTPEK---WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS-----R 1490
+ + K + + +D++ I V +++
Sbjct: 134 ENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYD 193
Query: 1491 MRYIASQVENKIRIVALS 1508
++ + E + ++ +
Sbjct: 194 LKTKSWVGEARGCLMVST 211
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 52.0 bits (123), Expect = 4e-08
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 27/164 (16%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +L GAGKT + IL + A R +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRV---------------- 47
Query: 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLL 627
+M + T + ++ + R +++
Sbjct: 48 ----VLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNW-EVI 102
Query: 628 IIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
I+DE H L SI AR + ++AT P
Sbjct: 103 IMDEAHFLDP------ASIAARGWAAHRARANESATILMTATPP 140
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 22/156 (14%)
Query: 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412
+ ++ G+GKT IL + +R + +AP + E +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR----LRTLVLAPTRVVLSEMKEAFHG 58
Query: 1413 KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472
+ + L+ R + V + I+DE
Sbjct: 59 LDVKFHTQAFSAHGSGREVI------------DAMCHATLTYRMLEPTRVVNWEVIIMDE 106
Query: 1473 LHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
H + R R N+ + ++
Sbjct: 107 AHFLDPASIAARGWAAHRARA------NESATILMT 136
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+ + Q Q +Y + N L+ PTG GKT +A++ +L
Sbjct: 5 RDLIQPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRL----------TKYG 52
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K++ +AP K LV + + + K+ L+G+++ + + V I
Sbjct: 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI 112
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + V L++ DE H N R+ + ++ ++GL+A+
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGNYAY------VFIAREYKRQAKNPLVIGLTASP 166
Query: 671 PNYEDVALFLRVNLE 685
+ + + + NL
Sbjct: 167 GSTPEKIMEVINNLG 181
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 12/179 (6%)
Query: 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403
Q ++ T N L+ PTG GKT+ A++ + ++ G + +AP + L
Sbjct: 12 IYQEVIYAKCKET--NCLIVLPTGLGKTLI---AMMIAEYRLTKYGGK-VLMLAPTKPLV 65
Query: 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1463
+ + F ++V LTGE + + + + + + R ++
Sbjct: 66 LQHAESFRRLFN-LPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLE 124
Query: 1464 QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
VSL + DE H G V R Q +N + I ++ + + + E I
Sbjct: 125 DVSLIVFDEAHRAVGNYAYVF-----IAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 47.2 bits (111), Expect = 2e-06
Identities = 24/156 (15%), Positives = 39/156 (25%), Gaps = 31/156 (19%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573
L APTG+GK+ Q YK++ + P A +S
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKA 56
Query: 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633
+ + T + + ++I DE H
Sbjct: 57 HGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSG------------GAYDIIICDECH 104
Query: 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ TV T +V +AT
Sbjct: 105 STDATSILGI-----GTVLDQAETAGARLVVLATAT 135
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 39.8 bits (92), Expect = 7e-04
Identities = 20/154 (12%), Positives = 36/154 (23%), Gaps = 26/154 (16%)
Query: 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
+ + APTGSGK+ A + + + P A
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAAYAAQG--------YKVLVLNPSVAATLGFGAYMSKAH 57
Query: 1415 GQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G +R T T + G+ + I DE H
Sbjct: 58 GVDPNIRTGVRTITTGSPITYSTYGKF-------------LADGGCSGGAYDIIICDECH 104
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
+ ++ + +V +
Sbjct: 105 STDATSILGIGTVLDQAET-----AGARLVVLAT 133
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (112), Expect = 5e-06
Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 8/169 (4%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L ++ GF+ + IQ + + D VL A +G+GKT F+I +
Sbjct: 17 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGT--FSIAALQRID 73
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV-VELTGETAMDLKLLEKGQIIIS 1444
+ +A+ +AP LA + + D + L QI++
Sbjct: 74 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVG 133
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + +R + R ++ +FI+DE + G + I + +
Sbjct: 134 TPGRVFDNIQRRRFR--TDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 180
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 14/177 (7%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRN---- 1381
L + + ++ PIQ + D ++ A TGSGKT I+ +
Sbjct: 28 LDPTIRNNILLASYQRPTPIQKNAIPAILEHRD-IMACAQTGSGKTAAFLIPIINHLVCQ 86
Query: 1382 ---HQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM---DLKL 1435
Q+ S+T + + +AP LA + + + +R + G ++
Sbjct: 87 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRSCVVYGGADTHSQIREV 145
Query: 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
++++TP + + K + + + ++ P + I+
Sbjct: 146 QMGCHLLVATPGRLVDFIEKNKI-SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 201
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 11/171 (6%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
LR L +Y GF+ + IQ + + D V+ + +G+GKT ++L+
Sbjct: 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRD-VIAQSQSGTGKTATFSISVLQCLDIQ 82
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+A+ +AP LA + + G + ++ G T + KL ++
Sbjct: 83 VRE--TQALILAPTRELAVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVV 139
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + + RR R ++ ++DE + +G + + +
Sbjct: 140 AGTPGRVFDMIRRRSLRTRAIKM--LVLDEADEMLNKGFKEQIYDVYRYLP 188
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 4e-05
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L +Y GF+ + IQ + D V+ A +G+GKT FAI Q
Sbjct: 19 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTAT--FAISILQQIE 75
Query: 1386 SETGVMRAVYIAPLEALA---KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQII 1442
+ +A+ +AP LA ++ G + + +E II
Sbjct: 76 LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHII 135
Query: 1443 ISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
+ TP + +D L+RR+ KY++ L DE+ G + + I ++
Sbjct: 136 VGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFK--DQIYDIFQKLN 184
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 44.9 bits (105), Expect = 6e-05
Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 22/152 (14%)
Query: 546 FNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTP 605
+ KI+ + P AL ++ + + ++++ G + + + ++V T
Sbjct: 153 LENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTW 212
Query: 606 EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665
+ ++ + +++ DE HL G + SI++ + G
Sbjct: 213 QTVVKQPKEWFSQ-----FGMMMNDECHLA---TGKSISSIISG------LNNCMFKF-G 257
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRP 697
LS +L + + + F ++P
Sbjct: 258 LSGSLRDGKA----NIMQYV---GMFGEIFKP 282
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 39.9 bits (92), Expect = 0.002
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
PT +G+++ + + + I P AL + D+ + + +
Sbjct: 135 LPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDF-VDYRLFSHAMIK 189
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
++ G + D K +++ T + + +++ Q + + DE HL G
Sbjct: 190 KIGGGASKDDKYKNDAPVVVGTWQTV-----VKQPKEWFSQFGMMMNDECHLA---TGKS 241
Query: 1484 LEVIVSRMR 1492
+ I+S +
Sbjct: 242 ISSIISGLN 250
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 43.7 bits (102), Expect = 1e-04
Identities = 44/299 (14%), Positives = 101/299 (33%), Gaps = 47/299 (15%)
Query: 579 VKVRELSGDQTLTRQQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637
V+V +L R+ + E + + + ++ S D ++++ I +
Sbjct: 7 VRV-DLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKG 65
Query: 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSA---TLPNYEDVALFLRVNLEKGLFYFDNS 694
N + ++ E + GLSA + + A K +F
Sbjct: 66 NHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 125
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
+ + L Q I + P + + ++ + + ++++F + R+ K +
Sbjct: 126 KKAISLLVQAKEIGLDHP--KMDKLKEII-REQLQRKQNSKIIVFTNYRETAKKIVNELV 182
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
++ K + G+++ +++L+ D
Sbjct: 183 KDGIKAKRF----------------VGQASK-------------ENDRGLSQREQKLILD 213
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
F G VLV+T+ G+++P +++ Y P S + +Q GR GR
Sbjct: 214 EFARGEFNVLVATSVGEEGLDVPEVDLVV----FYEPVP------SAIRSIQRRGRTGR 262
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L ++ GF+ +PIQ + V D +L A G+GKT L +
Sbjct: 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKP- 65
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+ ++A+ + P LA + + G+ G+ + TG T + L+L E I+
Sbjct: 66 -KLNKIQALIMVPTRELALQTSQVVRT-LGKHCGISCMVTTGGTNLRDDILRLNETVHIL 123
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
+ TP + K + + ++ ++E I+S +
Sbjct: 124 VGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP 172
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 4e-04
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L ++ G++ +PIQ + + + D +L A G+GK+ +L
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLK 68
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+ ++A+ I P LA + + G +V+ TG T + ++L + ++
Sbjct: 69 KDN--IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV 126
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
I+TP + + K + + + L+ ++E I+ +
Sbjct: 127 IATPGRILD-LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2114 | |||
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.97 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.96 | |
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.94 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.92 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.91 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.91 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.91 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.91 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.9 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.9 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.88 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.85 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.84 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.78 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.78 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.78 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.78 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.77 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.77 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.75 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.74 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.73 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.73 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.72 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.72 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.72 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.72 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.71 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.71 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.71 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.7 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.7 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.69 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.67 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.67 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.66 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.64 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.59 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.56 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.55 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.54 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.52 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.52 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.51 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.5 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.5 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.47 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.46 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.45 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.43 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.43 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.43 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.41 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.39 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.37 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.35 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.34 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.32 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.26 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.25 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.24 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.22 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.21 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.21 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.18 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.06 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.9 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.78 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 98.74 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.48 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.45 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.44 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.4 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.39 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.32 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.31 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.21 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.96 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.95 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.75 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.66 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.21 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.1 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 96.97 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.93 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.88 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.62 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.47 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.32 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.16 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.13 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.11 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 95.98 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.65 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 95.57 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 95.53 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.3 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.19 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.04 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.91 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.9 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.87 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.67 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 94.39 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 94.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.04 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.88 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 93.76 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 93.68 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.65 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.65 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.54 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.34 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.99 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.8 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.43 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.32 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.03 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 91.79 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 91.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.28 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 91.15 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.27 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.25 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.13 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.95 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.76 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 89.58 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 89.34 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 88.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 88.48 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 88.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.91 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 87.65 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 87.5 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 86.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.4 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 84.37 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 83.38 | |
| d2axtu1 | 98 | Photosystem II 12 kDa extrinsic protein PsbU {Ther | 82.55 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.41 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.33 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 82.2 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.04 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.0 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.89 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.3 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.7e-32 Score=297.61 Aligned_cols=176 Identities=55% Similarity=0.950 Sum_probs=171.7
Q ss_pred CChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 000129 1815 TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSA 1894 (2114)
Q Consensus 1815 ~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqahlsr~~lp~~l~~D~~~il~~a 1894 (2114)
++++++|++||.|.||.++|+|++|+..+.+|++.+|++.+.+.+++|+.|+++||||||+|+++|.+|..|+..|++++
T Consensus 1 t~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~~sl~~D~~~I~~~~ 80 (176)
T d2q0zx1 1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKA 80 (176)
T ss_dssp CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCcHhhccCCCCccHHHHHHHHHHhCCCCCcccccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999988778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHH
Q 000129 1895 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERREL 1974 (2114)
Q Consensus 1895 ~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~l 1974 (2114)
+||++||+|++...||+++++++++|+|||+||+|++++||+|||||+++.++++..+| +.|+.+|.+++++++..+
T Consensus 81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~---i~sl~~l~~~~~~e~~~l 157 (176)
T d2q0zx1 81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERNAL 157 (176)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHHHHHHCC---CCCHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 000129 1975 LQMSDVQLLDIARFCNRFP 1993 (2114)
Q Consensus 1975 l~~~~~~~~~i~~~~~~~P 1993 (2114)
+++++.++++|.++|+.||
T Consensus 158 l~~~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 158 LQLTDSQIADVARFCNRYP 176 (176)
T ss_dssp HCCCHHHHHHHHHHHTTSC
T ss_pred HcCCHHHHHHHHHHHHhCc
Confidence 9999999999999999999
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.1e-30 Score=254.89 Aligned_cols=114 Identities=56% Similarity=1.068 Sum_probs=107.3
Q ss_pred ceEEEEEEeccccccCCCcEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccccEEEE
Q 000129 1994 NIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKL 2073 (2114)
Q Consensus 1994 ~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l 2073 (2114)
+|+|++++.+++.+.+|++++|+|+|+|+++ ..++||||+||++|.|+||++|||.++|+|+++||+++.+..++++
T Consensus 1 ni~~~~~v~d~~~v~~g~~~~l~V~l~R~~~---~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~~~~~l 77 (114)
T d2q0zx2 1 NIELSYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 77 (114)
T ss_dssp CEEEEEEETTGGGCBTTSEEEEEEEEEECSS---CCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEE
T ss_pred CceEEEEEcCCcceecCCeEEEEEEEEEcCC---cCCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEeccccceEEEE
Confidence 6899999999999999999999999999642 3468999999999999999999999999999999999999889999
Q ss_pred EEEecCCCCceEEEEEEEecCccccCeEEEEEEEeecC
Q 000129 2074 DFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2111 (2114)
Q Consensus 2074 ~f~~p~~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~~~ 2111 (2114)
+|.+| .+|.|+|++|+|||||+||||+++|+|+|.||
T Consensus 78 ~f~~p-~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~eA 114 (114)
T d2q0zx2 78 DFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 114 (114)
T ss_dssp EEECC-SSEEEEEEEEEEESSCSSCCEEEEEEEEEBCC
T ss_pred EEeCC-CCCeEEEEEEEEcccccccceEEEEEEEeecC
Confidence 99999 57999999999999999999999999999986
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.4e-29 Score=277.86 Aligned_cols=172 Identities=26% Similarity=0.428 Sum_probs=164.8
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHHHHhccCCCCCCCC-CCChhHHHHHHHHHHHhcccCCCCcccchHHHHHHhH
Q 000129 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSA 1103 (2114)
Q Consensus 1025 ~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~-~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a 1103 (2114)
...++|+++|.|.||.++++|++|+.+|.+|..++|+|++++ +++|+.|+++||||||+|++++ .+|.+|+.||+++|
T Consensus 2 ~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~-~sl~~D~~~I~~~~ 80 (176)
T d2q0zx1 2 KVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKA 80 (176)
T ss_dssp CHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCcHhhccCCCCccHHHHHHHHHHhCCCCCcccccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999875 8899999999999999999996 69999999999999
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhc-
Q 000129 1104 GRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR- 1181 (2114)
Q Consensus 1104 ~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~- 1181 (2114)
.||++||+|||..+||+..+..+++|||||+|++|++.+||+|||+++++.++++.++|+ +++++.+++++|++.+++
T Consensus 81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll~~ 160 (176)
T d2q0zx1 81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQL 160 (176)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999998 799999999999999998
Q ss_pred CchhHHHHHHHHhcCC
Q 000129 1182 FPKMGRTLHKFVHQFP 1197 (2114)
Q Consensus 1182 ~~~~~~~i~~~~~~~P 1197 (2114)
.++.++.|.++++.||
T Consensus 161 ~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 161 TDSQIADVARFCNRYP 176 (176)
T ss_dssp CHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5778999999999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.95 E-value=9.1e-28 Score=290.99 Aligned_cols=284 Identities=17% Similarity=0.140 Sum_probs=181.9
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeC
Q 000129 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2114)
++..++++|+.||||||||++|+.+++...... +.+++|++||++||.|++++|++.. +.+....+
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~----------~~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~~~ 70 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEMEEALRGLP----IRYQTPAI 70 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH----------TCCEEEEESSHHHHHHHHHHTTTSC----CBCCC---
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc----------CCEEEEEccHHHHHHHHHHHHhcCC----cceeeeEE
Confidence 456778899999999999999988888766543 2379999999999999998876542 22211111
Q ss_pred CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEE
Q 000129 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2114)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~l 666 (2114)
+ ........|+++||+.+...... ...+.++++|||||+|++.+. +..+..++..+ ......+++++
T Consensus 71 ~----~~~~~~~~i~~~t~~~l~~~~~~---~~~~~~~~~vViDE~H~~~~~-~~~~~~~l~~~-----~~~~~~~~v~~ 137 (305)
T d2bmfa2 71 R----AEHTGREIVDLMCHATFTMRLLS---PIRVPNYNLIIMDEAHFTDPA-SIAARGYISTR-----VEMGEAAGIFM 137 (305)
T ss_dssp ---------CCCSEEEEEHHHHHHHHTS---SSCCCCCSEEEEESTTCCSHH-HHHHHHHHHHH-----HHHTSCEEEEE
T ss_pred e----ecccCccccccCCcHHHHHHHhc---CccccceeEEEeeeeeecchh-hHHHHHHHHHh-----hccccceEEEe
Confidence 1 11224578999999976444332 245688999999999987532 11222222222 12457899999
Q ss_pred ccccCChHHHHHHHhccccCceEeecCCcccccceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHH
Q 000129 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746 (2114)
Q Consensus 667 SATlpn~~dva~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~ 746 (2114)
|||.|+... .+.....|+... ...+........ . ..+ ...++++||||++++++
T Consensus 138 SAT~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~----~----~~~--~~~~~~~lvf~~~~~~~ 191 (305)
T d2bmfa2 138 TATPPGSRD--------------PFPQSNAPIMDE--EREIPERSWNSG----H----EWV--TDFKGKTVWFVPSIKAG 191 (305)
T ss_dssp CSSCTTCCC--------------SSCCCSSCEEEE--ECCCCCSCCSSC----C----HHH--HSSCSCEEEECSCHHHH
T ss_pred ecCCCccee--------------eecccCCcceEE--EEeccHHHHHHH----H----HHH--HhhCCCEEEEeccHHHH
Confidence 999874211 011111121111 111111110000 0 011 12367899999999999
Q ss_pred HHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEe
Q 000129 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (2114)
Q Consensus 747 ~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa 826 (2114)
+.++..|.+.+.. +..+||++....| ..|++|..+++||
T Consensus 192 ~~l~~~L~~~~~~-------------------------------------~~~l~~~~~~~~~----~~~~~~~~~~lva 230 (305)
T d2bmfa2 192 NDIAACLRKNGKK-------------------------------------VIQLSRKTFDSEY----IKTRTNDWDFVVT 230 (305)
T ss_dssp HHHHHHHHHHTCC-------------------------------------CEECCTTCHHHHG----GGGGTSCCSEEEE
T ss_pred HHHHHHHHhCCCC-------------------------------------EEEeCCcChHHHH----hhhhccchhhhhh
Confidence 9999999876532 3456999866554 4688999999999
Q ss_pred chHhhhhcCCCceEEEEec-----ceeccCCCCcc----ccCCHHHHHHhhcccCCCCCCCceEEEEEc
Q 000129 827 TATLAWGVNLPAHTVIIKG-----TQIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2114)
Q Consensus 827 T~tla~GVdlP~v~vVI~~-----~~~yd~~~g~~----~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2114)
|+++++|+|++...||..+ ...|+++.+.. .++|..+|+||+|||||.|.+ |.+.+++
T Consensus 231 T~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~--~~~~~~~ 297 (305)
T d2bmfa2 231 TDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKN--ENDQYIY 297 (305)
T ss_dssp CGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSC--CCEEEEE
T ss_pred hHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCC--ceEEEEE
Confidence 9999999999866554222 22355554311 457999999999999998843 4444443
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.94 E-value=7.7e-27 Score=282.78 Aligned_cols=275 Identities=16% Similarity=0.110 Sum_probs=180.2
Q ss_pred HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc
Q 000129 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (2114)
Q Consensus 1353 il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~ 1432 (2114)
++..+++++|.||||||||++|+.+++...... +. ++||++||++||.|++++|+. ++ ..+....+ .
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~~--~~lvi~Ptr~La~q~~~~l~~-~~----~~~~~~~~----~ 71 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--GL--RTLILAPTRVVAAEMEEALRG-LP----IRYQTPAI----R 71 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--TC--CEEEEESSHHHHHHHHHHTTT-SC----CBCCC--------
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--CC--EEEEEccHHHHHHHHHHHHhc-CC----cceeeeEE----e
Confidence 345688899999999999999988888776652 33 899999999999999887763 21 11111111 1
Q ss_pred hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
........|+++||+.+..... ....+.+++++|+||+|++..+. .. +...++.+.. ..+.+++++|||++
T Consensus 72 ~~~~~~~~i~~~t~~~l~~~~~---~~~~~~~~~~vViDE~H~~~~~~-~~---~~~~l~~~~~--~~~~~~v~~SAT~~ 142 (305)
T d2bmfa2 72 AEHTGREIVDLMCHATFTMRLL---SPIRVPNYNLIIMDEAHFTDPAS-IA---ARGYISTRVE--MGEAAGIFMTATPP 142 (305)
T ss_dssp ----CCCSEEEEEHHHHHHHHT---SSSCCCCCSEEEEESTTCCSHHH-HH---HHHHHHHHHH--HTSCEEEEECSSCT
T ss_pred ecccCccccccCCcHHHHHHHh---cCccccceeEEEeeeeeecchhh-HH---HHHHHHHhhc--cccceEEEeecCCC
Confidence 1112345899999998655433 35567899999999999886432 11 1222222211 35789999999986
Q ss_pred ChhHHHHHhcCCCCceeecCCCCCccCcEEEEecccccchHHHHHhcCHHHHHHHHHHhcCCCCEEEEeCChHHHHHHHH
Q 000129 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAV 1592 (2114)
Q Consensus 1513 n~~dla~wl~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~ 1592 (2114)
.... .+. .+..++............ ..... .....++++||||+++++|+.++.
T Consensus 143 ~~~~-------------~~~--~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~lvf~~~~~~~~~l~~ 196 (305)
T d2bmfa2 143 GSRD-------------PFP--QSNAPIMDEEREIPERSW--------NSGHE---WVTDFKGKTVWFVPSIKAGNDIAA 196 (305)
T ss_dssp TCCC-------------SSC--CCSSCEEEEECCCCCSCC--------SSCCH---HHHSSCSCEEEECSCHHHHHHHHH
T ss_pred ccee-------------eec--ccCCcceEEEEeccHHHH--------HHHHH---HHHhhCCCEEEEeccHHHHHHHHH
Confidence 5321 011 111122222111111110 00001 112457889999999999999987
Q ss_pred HHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecCccccc
Q 000129 1593 DLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1672 (2114)
Q Consensus 1593 ~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~G 1672 (2114)
.|.. .+..+..+||+++...+ ..|++|..+++|||+++++|
T Consensus 197 ~L~~-----------------------------------~~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G 237 (305)
T d2bmfa2 197 CLRK-----------------------------------NGKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMG 237 (305)
T ss_dssp HHHH-----------------------------------HTCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTT
T ss_pred HHHh-----------------------------------CCCCEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhc
Confidence 7732 23457889999876554 46789999999999999999
Q ss_pred cCCCCcEEEEEee-----eEecCCcC----cCCCCCHhHHHHhHcccCCCC
Q 000129 1673 VPLTAHLVVVMGT-----QYYDGQEN----AHTDYPVTDLLQMMGHASRPL 1714 (2114)
Q Consensus 1673 vdip~~~vVI~gt-----~~yd~~~~----~~~~~s~~~~lQr~GRAGR~~ 1714 (2114)
+|++...+|..|. ..|++... ...|.|..+|+||+|||||.|
T Consensus 238 ~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~ 288 (305)
T d2bmfa2 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP 288 (305)
T ss_dssp CCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS
T ss_pred CCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCC
Confidence 9998877765443 33444321 235789999999999999985
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.9e-25 Score=249.73 Aligned_cols=183 Identities=19% Similarity=0.311 Sum_probs=149.5
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|.....+++.. ||..|+|+|+++|+.+++++ |+++.||||||||++|++|+++++..... .+++++++||++||.
T Consensus 23 ~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~-dvi~~a~TGSGKTlayllPil~~l~~~~~--~~~~lil~PtreLa~ 99 (222)
T d2j0sa1 23 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQVR--ETQALILAPTRELAV 99 (222)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTSC--SCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CeEEEcCcchhhhhhhccccccccccccc--CceeEEecchHHHHH
Confidence 355566666665 89999999999999999855 59999999999999999999999876433 348999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch---hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+++.++ .+++..++++..+.|+...+. .....++|+|+||+++..+.++ ....+++++++|+||||.+.+.+
T Consensus 100 Qi~~~~~-~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~- 175 (222)
T d2j0sa1 100 QIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKG- 175 (222)
T ss_dssp HHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTT-
T ss_pred HHHHHHH-HHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc--cccccccceeeeecchhHhhhcC-
Confidence 9999998 688878899999999877552 2234679999999999888766 34568999999999999998765
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHH
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEW 1520 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~w 1520 (2114)
+...+..+...++...|++++|||+++. .++++.
T Consensus 176 -----f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~ 210 (222)
T d2j0sa1 176 -----FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNK 210 (222)
T ss_dssp -----THHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGG
T ss_pred -----cHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHH
Confidence 4455666777778899999999999753 344443
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=2.8e-25 Score=249.71 Aligned_cols=158 Identities=32% Similarity=0.467 Sum_probs=132.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.++|+||||+||+.|+.+|..|.......... ......+........+..|.+++.+||++|||||++.+|..
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ 111 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVEN-------EGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 111 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCC-------SSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhch-------hHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHH
Confidence 36899999999999999999998765432211 11223333334444567799999999999999999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcH
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~ 891 (2114)
+++.|++|.++|||||++++||||+|+++|||++++.||... .+++..+|+||+|||||+|.|..|.+++++...+.
T Consensus 112 ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~---~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~ 188 (201)
T d2p6ra4 112 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 188 (201)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE---EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCc---CCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCCh
Confidence 999999999999999999999999999999999999987543 56899999999999999999999999999998877
Q ss_pred HH-HHHhhc
Q 000129 892 RY-YLSLMN 899 (2114)
Q Consensus 892 ~~-~~~ll~ 899 (2114)
+. +.+++.
T Consensus 189 ~~~~k~~~~ 197 (201)
T d2p6ra4 189 EIAVKRYIF 197 (201)
T ss_dssp HHHHHTTTS
T ss_pred HHHHHHHhc
Confidence 64 555655
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.8e-25 Score=251.54 Aligned_cols=182 Identities=19% Similarity=0.292 Sum_probs=149.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+..++ .||+.|+|+|+++||.++.+. |++++||||||||++|++|+++.+.... ..+++++++||
T Consensus 24 L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~-dvi~~a~TGSGKTlayllPil~~l~~~~--------~~~~~lil~Pt 94 (222)
T d2j0sa1 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQV--------RETQALILAPT 94 (222)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CeEEEcCcchhhhhhhcccccccccccc--------cCceeEEecch
Confidence 677777776 699999999999999999865 5999999999999999999999875432 35689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++||.|+++.+.++.+..++++..++|+.....+. ..+++|+|+||+++ +.+.+.. ..+++++++|+||||.|
T Consensus 95 reLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~---~~~~~l~~lVlDEaD~l 171 (222)
T d2j0sa1 95 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEM 171 (222)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccc---cccccceeeeecchhHh
Confidence 99999999999998888899999999998766543 35789999999998 4444433 46789999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~ 684 (2114)
.+ +++..++.|+.. .+...|++++|||+| .++.++.+...
T Consensus 172 l~~~f~~~i~~I~~~-------l~~~~Q~ilfSAT~~--~~v~~l~~~~l 212 (222)
T d2j0sa1 172 LNKGFKEQIYDVYRY-------LPPATQVVLISATLP--HEILEMTNKFM 212 (222)
T ss_dssp TSTTTHHHHHHHHTT-------SCTTCEEEEEESCCC--HHHHTTGGGTC
T ss_pred hhcCcHHHHHHHHHh-------CCCCCEEEEEEEeCC--HHHHHHHHHHC
Confidence 98 577777766544 467889999999998 45655555443
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=4.7e-25 Score=247.85 Aligned_cols=163 Identities=26% Similarity=0.399 Sum_probs=133.4
Q ss_pred HHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCH
Q 000129 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2114)
Q Consensus 1566 ~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~ 1645 (2114)
.+.+.+.+++|+||||+||+.|+.+|..|............ + ...+........+..|.+++.+||++|||||++
T Consensus 32 l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~ 106 (201)
T d2p6ra4 32 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG-L----EKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 106 (201)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS-H----HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhH-H----HHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhh
Confidence 34455577899999999999999999999876543322111 0 011111122335677999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEe
Q 000129 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2114)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~ 1725 (2114)
.+|..++++|++|.++|||||+++++|||+|++.+||+++++|++.. .|++..+|+||+|||||+|.+..|.|++++
T Consensus 107 ~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~---~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~ 183 (201)
T d2p6ra4 107 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183 (201)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE---EECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred hhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCc---CCCCHHHHHHHhcccCCCCCCCeeEEEEEe
Confidence 99999999999999999999999999999999999999999999654 578999999999999999999999999999
Q ss_pred ecCcHHH-HHHH
Q 000129 1726 HAPRKEY-YKKF 1736 (2114)
Q Consensus 1726 ~~~~~~~-~~~~ 1736 (2114)
...+++. ++++
T Consensus 184 ~~~~~~~~~k~~ 195 (201)
T d2p6ra4 184 GKRDREIAVKRY 195 (201)
T ss_dssp CGGGHHHHHHTT
T ss_pred CCCChHHHHHHH
Confidence 9887654 5544
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=1.5e-24 Score=246.35 Aligned_cols=173 Identities=23% Similarity=0.351 Sum_probs=145.3
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.||+++.+++ .||.+|+|+|+++++.++.++.|++++||||+|||++|++++++..... .+++++|++|
T Consensus 10 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~---------~~~~~lil~p 80 (208)
T d1hv8a1 10 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTP 80 (208)
T ss_dssp SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccc---------cCcceEEEee
Confidence 3688888877 6999999999999999999877899999999999999999999865432 4568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHH-HHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++||.|+.+.+..+....+.++..++|+.+...+ ...+++|+|+||+++ +.+.++. ..+++++++||||||.+
T Consensus 81 t~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~---~~~~~l~~lViDEad~l 157 (208)
T d1hv8a1 81 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---LNLKNVKYFILDEADEM 157 (208)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEETHHHH
T ss_pred ccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCC---CCcccCcEEEEEChHHh
Confidence 99999999999999988889999999998876543 346799999999997 5554443 45789999999999988
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
.+ +++..++.|+.. .+++.|++++|||+|+
T Consensus 158 ~~~~~~~~i~~I~~~-------~~~~~Q~i~~SAT~~~ 188 (208)
T d1hv8a1 158 LNMGFIKDVEKILNA-------CNKDKRILLFSATMPR 188 (208)
T ss_dssp HTTTTHHHHHHHHHT-------SCSSCEEEEECSSCCH
T ss_pred hcCCChHHHHHHHHh-------CCCCCeEEEEEccCCH
Confidence 76 577766666543 4678999999999984
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2e-24 Score=246.38 Aligned_cols=185 Identities=20% Similarity=0.286 Sum_probs=147.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+..++ .||++|+|+|+++|+.++.+++ ++++||||||||++|++|+++.+... ..+++++|++||
T Consensus 19 L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllp~l~~i~~~--------~~~~~alil~Pt 89 (218)
T d2g9na1 19 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELD--------LKATQALVLAPT 89 (218)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--------CCSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcccchhhhhhhhhhhhheeccc--------ccCccEEEEccc
Confidence 677777777 6999999999999999988755 99999999999999999999998543 245689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
++||.|+++.+..+....++.+..+.|+....... ...++|+|+||+++..+.++.. ..+++++++|+||||.|
T Consensus 90 ~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~--~~~~~l~~lVlDEaD~l 167 (218)
T d2g9na1 90 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY--LSPKYIKMFVLDEADEM 167 (218)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTS--SCSTTCCEEEEESHHHH
T ss_pred chhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCC--cccccceEEEeeecchh
Confidence 99999999999999888888888888866554432 3478999999999844444332 56788999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~~ 686 (2114)
.+ +++..++.|+.. .+.+.|++++|||+|+ ++.++.+....+
T Consensus 168 l~~~f~~~~~~Il~~-------~~~~~Q~il~SAT~~~--~v~~~~~~~l~~ 210 (218)
T d2g9na1 168 LSRGFKDQIYDIFQK-------LNSNTQVVLLSATMPS--DVLEVTKKFMRD 210 (218)
T ss_dssp HHTTCHHHHHHHHHH-------SCTTCEEEEEESCCCH--HHHHHHHHHCSS
T ss_pred hcCchHHHHHHHHHh-------CCCCCeEEEEEecCCH--HHHHHHHHHCCC
Confidence 88 577777766554 3667899999999984 455555443333
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.91 E-value=1.9e-24 Score=250.08 Aligned_cols=195 Identities=17% Similarity=0.242 Sum_probs=151.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCC-CCCCCCCcEEEEEcc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD-GSFNHSNYKIVYVAP 558 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~-g~~~~~~~kil~iaP 558 (2114)
|++++++++ .||++|+|+|+++++.++++ +|++++||||||||++|++|+++.+....... .......+++++++|
T Consensus 28 l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g-~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~p 106 (238)
T d1wrba1 28 LDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 106 (238)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhhhCC-CCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEecc
Confidence 577777777 59999999999999998876 45999999999999999999999987543211 112235678999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++||.|+++.+.......++++..++|+.....+ ....++|+|+||+++..+.+... ..+.+++++|+||||.+
T Consensus 107 t~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~--~~l~~v~~lViDEaD~l 184 (238)
T d1wrba1 107 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRM 184 (238)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHH
T ss_pred chhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCc--eeccccceeeeehhhhh
Confidence 99999999999999888889999999998876543 23578999999999855555443 46789999999999988
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~ 684 (2114)
.+ ++++.++.|+.++. .....+.|++++|||+| .++..+.+...
T Consensus 185 l~~~f~~~i~~Il~~~~---~~~~~~~Q~il~SAT~~--~~v~~l~~~~~ 229 (238)
T d1wrba1 185 LDMGFEPQIRKIIEESN---MPSGINRQTLMFSATFP--KEIQKLAADFL 229 (238)
T ss_dssp HHTTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCC--HHHHHHHHHHC
T ss_pred hhhccHHHHHHHHHHhc---CCCCCCCEEEEEeeeCC--HHHHHHHHHHC
Confidence 87 67777777765431 11234679999999998 34555544433
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=4.5e-24 Score=242.38 Aligned_cols=183 Identities=22% Similarity=0.366 Sum_probs=147.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|+.+..+++.. ||.+|+|+|.++|+.+++++.|++++||||||||++|.+|+++.... ..+++++|++||++||.|
T Consensus 11 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~---~~~~~~lil~pt~~l~~q 87 (208)
T d1hv8a1 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILTPTRELAIQ 87 (208)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc---ccCcceEEEeeccccchh
Confidence 44456666655 79999999999999999987789999999999999999999987765 334599999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCch
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (2114)
+++.+. .+....+.++..++|+.... .+.+.+++|+|+||+++..++++ ....+++++++|+||||.+.+..
T Consensus 88 ~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~--~~~~~~~l~~lViDEad~l~~~~--- 161 (208)
T d1hv8a1 88 VADEIE-SLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG--- 161 (208)
T ss_dssp HHHHHH-HHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT---
T ss_pred hhhhhh-hhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHc--CCCCcccCcEEEEEChHHhhcCC---
Confidence 999998 56666688999999987654 44567889999999999888876 33468999999999999877543
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1484 le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
....+..+...++++.|++++|||+++. .++++.+
T Consensus 162 ---~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~ 197 (208)
T d1hv8a1 162 ---FIKDVEKILNACNKDKRILLFSATMPREILNLAKKY 197 (208)
T ss_dssp ---THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHH
T ss_pred ---ChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHH
Confidence 2233445556667889999999999863 4555433
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=1.1e-24 Score=246.99 Aligned_cols=183 Identities=31% Similarity=0.507 Sum_probs=151.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
+|+++...+ .||.+|+|+|.++++.++++ +|++++||||||||.+|.++++..+... .++||++|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~-~~~il~apTGsGKT~~a~l~i~~~~~~~-----------~~vl~l~P~ 77 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPL 77 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTC-SCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCchhHHHHHHHHHHhhcc-----------Ccceeeccc
Confidence 466666666 68999999999999988765 5699999999999999999999887653 279999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-C
Q 000129 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (2114)
++|+.|+.+.+++++. ...++...+|+..........+.|+++||..++.+.++.. ..+..+++||+||+|.+.+ .
T Consensus 78 ~~L~~q~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~ii~DE~h~~~~~~ 154 (202)
T d2p6ra3 78 RALAGEKYESFKKWEK-IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (202)
T ss_dssp HHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhh-ccccceeeccCcccccccccccceeeeccHHHHHHHhccc--hhhhhhhhccccHHHHhcccc
Confidence 9999999999987654 3567888888877666666789999999999988877664 4678899999999999987 5
Q ss_pred CchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
|+..++.++.++. ..++++|+|+||||+||++++++||+.+
T Consensus 155 r~~~~~~~l~~i~----~~~~~~~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 155 RGATLEILVTKMR----RMNKALRVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp THHHHHHHHHHHH----HHCTTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred cchHHHHHHHHHH----hcCCCCcEEEEcCCCCcHHHHHHHcCCC
Confidence 8888887777664 3466889999999999999999999765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.4e-24 Score=241.02 Aligned_cols=185 Identities=21% Similarity=0.309 Sum_probs=147.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+.+++ .||++|||+|+++++.++++. |++++||||||||++|++|+++.+.... .++++++++|
T Consensus 9 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvl~~a~TGsGKTlayllP~l~~~~~~~--------~~~~~lil~p 79 (206)
T d1veca_ 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGR-DILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVP 79 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTC-CEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEeeccCccccccccccchhhcccccc--------cCcceEEEee
Confidence 3677777776 799999999999999998775 4999999999999999999999875432 4568999999
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
+++||.|+++.+....... ++.+....|+....... ...++|+|+||+++..+.+... ..+++++++|+||||.
T Consensus 80 t~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~--~~~~~l~~lVlDEaD~ 157 (206)
T d1veca_ 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHH
T ss_pred cchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchh--ccccccceEEEecccc
Confidence 9999999999998766533 56777788877655432 3678999999999844444332 4678899999999999
Q ss_pred ccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc
Q 000129 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685 (2114)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~~~ 685 (2114)
|.+ +++..++.|+..+ +.+.|++++|||+| .++.++.+....
T Consensus 158 ll~~~f~~~i~~I~~~~-------~~~~Q~~l~SAT~~--~~v~~l~~~~l~ 200 (206)
T d1veca_ 158 LLSQDFVQIMEDIILTL-------PKNRQILLYSATFP--LSVQKFMNSHLE 200 (206)
T ss_dssp HTSTTTHHHHHHHHHHS-------CTTCEEEEEESCCC--HHHHHHHHHHCS
T ss_pred ccccchHHHHHHHHHhC-------CCCCEEEEEEecCC--HHHHHHHHHHCC
Confidence 987 6888877776543 66889999999998 456666654433
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.4e-24 Score=239.04 Aligned_cols=185 Identities=20% Similarity=0.262 Sum_probs=146.4
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|+....+++.. ||++|||+|++|++.++++++ ++++||||||||++|++|+++++.... .++++++++|+++||.
T Consensus 9 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllP~l~~~~~~~--~~~~~lil~pt~el~~ 85 (206)
T d1veca_ 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLKK--DNIQAMVIVPTRELAL 85 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCC-EEEECCSSSTTHHHHHHHHHHHCCTTS--CSCCEEEECSCHHHHH
T ss_pred CcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeeccCccccccccccchhhcccccc--cCcceEEEeecchhhH
Confidence 355667777776 899999999999999998655 999999999999999999999887643 3459999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccch--hh-ccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL--KL-LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~~-l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
|+++.+........+..+....|+..... .. -..++|+|+||+++..+++. ....+.+++++|+||||.+.+.+
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~- 162 (206)
T d1veca_ 86 QVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD- 162 (206)
T ss_dssp HHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT-
T ss_pred HHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc--hhccccccceEEEeccccccccc-
Confidence 99999885433345677777887766542 22 34569999999999988876 34568899999999999888754
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+...+..+...++++.|++++|||+++. .++++.+
T Consensus 163 -----f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~ 198 (206)
T d1veca_ 163 -----FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSH 198 (206)
T ss_dssp -----THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHH
Confidence 3444555666678899999999999763 4555544
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-23 Score=237.31 Aligned_cols=184 Identities=22% Similarity=0.326 Sum_probs=146.1
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+++.. ||++|+|+|.++++.++++++ +++.||||||||++|++|+++.+... .+++++++++|+++||.|
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~A~TGsGKTla~~lp~l~~~~~~--~~~~~~lil~PtreL~~q 84 (207)
T d1t6na_ 8 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCHTRELAFQ 84 (207)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCC-EEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEECSCHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-eEEEeccccccccccccceeeeeccc--CCCceEEEEeccchhhHH
Confidence 55566777765 899999999999999998655 99999999999999999999987763 334599999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcccch--hhc--cCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCC
Q 000129 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2114)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (2114)
+++.++ .++.. ..+++..++|+..... ..+ ..++|+|+||+++..++++ ....++++.++|+||||.+.+..
T Consensus 85 i~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~--~~~~l~~l~~lVlDEaD~ll~~~ 161 (207)
T d1t6na_ 85 ISKEYE-RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQL 161 (207)
T ss_dssp HHHHHH-HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSSH
T ss_pred HHHHHH-HHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC--CceeccccceeehhhhhhhhhcC
Confidence 999988 56654 3467788888876542 222 3569999999999998876 34568999999999999887542
Q ss_pred CchHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1481 g~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
| +...+..+...++++.|++++|||+++. .++++.+
T Consensus 162 ~-----~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~ 198 (207)
T d1t6na_ 162 D-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 198 (207)
T ss_dssp H-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred C-----cHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHH
Confidence 2 3445556666778899999999999763 5666654
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-23 Score=239.69 Aligned_cols=183 Identities=21% Similarity=0.327 Sum_probs=142.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||.+|+|+|+++|+.++.+++ ++++||||||||++|++|+++++... ...++++|++||++||.|
T Consensus 19 L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllp~l~~i~~~--~~~~~alil~Pt~eL~~Q 95 (218)
T d2g9na1 19 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELD--LKATQALVLAPTRELAQQ 95 (218)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcccchhhhhhhhhhhhheeccc--ccCccEEEEcccchhhhh
Confidence 45566666655 899999999999999998655 99999999999999999999998763 334599999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch----hhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (2114)
++..++ .+....+.++..+.|+..... .....++|+|+||+++..++++ ....+.++.++|+||||.+.+.+
T Consensus 96 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~--~~~~~~~l~~lVlDEaD~ll~~~- 171 (218)
T d2g9na1 96 IQKVVM-ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRG- 171 (218)
T ss_dssp HHHHHH-HHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT-
T ss_pred HHHHHh-hhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc--CCcccccceEEEeeecchhhcCc-
Confidence 999998 566666777777777554332 1224569999999999998876 34578999999999999987654
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh-hHHHHHh
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~-~dla~wl 1521 (2114)
+...+..+...++.+.|++++|||+++. .++++.+
T Consensus 172 -----f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~ 207 (218)
T d2g9na1 172 -----FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF 207 (218)
T ss_dssp -----CHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 2334444555567889999999999763 4555544
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.1e-23 Score=239.40 Aligned_cols=182 Identities=22% Similarity=0.279 Sum_probs=145.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++.+++ .||++|||+|+++|+.++.+.+ ++++||||||||++|++|+++.+.... .++++++++|
T Consensus 16 ~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a~~lp~i~~l~~~~--------~~~~~lil~p 86 (212)
T d1qdea_ 16 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 86 (212)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeecccccchhhhhHhhhHhhhhccC--------CCcceEEEcc
Confidence 4688888888 7999999999999999988765 999999999999999999999885432 4568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (2114)
+++|+.|+...+.......++.+..+.|+.....+ ...+++|+|+||+++..+.+... ..+++++++|+||||.+.
T Consensus 87 t~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~--~~l~~l~~lVlDEad~ll 164 (212)
T d1qdea_ 87 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR--FRTDKIKMFILDEADEML 164 (212)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHH
T ss_pred cHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCc--eecCcceEEeehhhhhhc
Confidence 99999999999998877778888888887655443 34578999999999855555443 468899999999999998
Q ss_pred c-CCchhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHH
Q 000129 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFL 680 (2114)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn-~~dva~~l 680 (2114)
+ +++..++.|+.+ .++..|++++|||+|+ .+.+++.+
T Consensus 165 d~~f~~~v~~I~~~-------~~~~~Q~vl~SAT~~~~v~~l~~~~ 203 (212)
T d1qdea_ 165 SSGFKEQIYQIFTL-------LPPTTQVVLLSATMPNDVLEVTTKF 203 (212)
T ss_dssp HTTCHHHHHHHHHH-------SCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-------CCCCCeEEEEEeeCCHHHHHHHHHH
Confidence 8 588777776654 3568899999999985 24444444
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1e-23 Score=239.01 Aligned_cols=173 Identities=23% Similarity=0.284 Sum_probs=137.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000129 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2114)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (2114)
|++.+.+++ .||++|+|+|++++|.++++++ ++++||||||||++|++|+++.+.... ..+++++++|+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~A~TGsGKTla~~lp~l~~~~~~~--------~~~~~lil~Pt 78 (207)
T d1t6na_ 8 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHT 78 (207)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCC-EEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSC
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-eEEEeccccccccccccceeeeecccC--------CCceEEEEecc
Confidence 567777776 6999999999999999998754 999999999999999999999865432 34689999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEeCCCccChhh----hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccc
Q 000129 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2114)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (2114)
|+||.|+.+.+....... .+++..++|+.....+. ...++|+|+||+++..+.+... ..+++++++|+||||.
T Consensus 79 reL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~--~~l~~l~~lVlDEaD~ 156 (207)
T d1t6na_ 79 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECDK 156 (207)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHHH
T ss_pred chhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCc--eeccccceeehhhhhh
Confidence 999999999998877654 36778888887665432 2468999999999855555432 4688999999999999
Q ss_pred cccC--CchhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000129 635 LHDN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 635 l~d~--rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn 672 (2114)
|.+. +...++.|+ +..+...|++++|||+|+
T Consensus 157 ll~~~~~~~~i~~I~-------~~~~~~~Q~il~SAT~~~ 189 (207)
T d1t6na_ 157 MLEQLDMRRDVQEIF-------RMTPHEKQVMMFSATLSK 189 (207)
T ss_dssp HHSSHHHHHHHHHHH-------HTSCSSSEEEEEESCCCT
T ss_pred hhhcCCcHHHHHHHH-------HhCCCCCEEEEEeeeCCH
Confidence 8874 333333332 335678899999999985
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=7.8e-24 Score=239.92 Aligned_cols=173 Identities=32% Similarity=0.626 Sum_probs=145.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1338 gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
||..|+|+|.++++.++++ +|++++||||||||.+|.++++..+.. .+ ++||++|+++|+.|+++++++ +...
T Consensus 22 g~~~l~~~Q~~ai~~l~~~-~~~il~apTGsGKT~~a~l~i~~~~~~---~~--~vl~l~P~~~L~~q~~~~~~~-~~~~ 94 (202)
T d2p6ra3 22 GIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGEKYESFKK-WEKI 94 (202)
T ss_dssp ---CCCCCCHHHHHHHTTC-SCEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHTT-TTTT
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCchhHHHHHHHHHHhhc---cC--cceeecccHHHHHHHHHHHHH-Hhhc
Confidence 6889999999999999875 569999999999999999999988765 44 899999999999999999984 4433
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC-CCchHHHHHHHHHHHHh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~-~g~~le~i~srl~~i~~ 1496 (2114)
..++...+|+.......+...+|+++||..+..+++++ ...+.++++||+||+|.+.++ ++..++.++.+++..
T Consensus 95 -~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~-- 169 (202)
T d2p6ra3 95 -GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-- 169 (202)
T ss_dssp -TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTT--CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--
T ss_pred -cccceeeccCcccccccccccceeeeccHHHHHHHhcc--chhhhhhhhccccHHHHhcccccchHHHHHHHHHHhc--
Confidence 46777888887766666677899999999999988874 346889999999999998764 677788888888765
Q ss_pred hcCCCceEEEEcccCCChhHHHHHhcCC
Q 000129 1497 QVENKIRIVALSTSLANAKDLGEWIGAT 1524 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dla~wl~~~ 1524 (2114)
+++.|+|+||||++|++++++|++..
T Consensus 170 --~~~~~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 170 --NKALRVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred --CCCCcEEEEcCCCCcHHHHHHHcCCC
Confidence 56899999999999999999999765
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.8e-23 Score=235.85 Aligned_cols=187 Identities=22% Similarity=0.305 Sum_probs=145.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHH
Q 000129 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2114)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~ 1404 (2114)
.|.....+++.. ||++|||+|.++|+.++.+++ ++++||||||||++|++|+++++... ..++++++++||++|+.
T Consensus 16 ~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a~~lp~i~~l~~~--~~~~~~lil~pt~el~~ 92 (212)
T d1qdea_ 16 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELAL 92 (212)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeecccccchhhhhHhhhHhhhhcc--CCCcceEEEcccHHHhh
Confidence 355566777765 899999999999999998665 99999999999999999999998763 33459999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
|++..+. .+....+..+..+.|+.... ...+++++|+|+||+++..+.+. ....+.+++++|+||||.+.+..
T Consensus 93 q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~--~~~~l~~l~~lVlDEad~lld~~-- 167 (212)
T d1qdea_ 93 QIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG-- 167 (212)
T ss_dssp HHHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT--
T ss_pred hhhhhhc-ccccccccceeeEeeccchhHHHHHhcCCcEEEECCCcccccccc--CceecCcceEEeehhhhhhcccc--
Confidence 9999987 56666677777777765443 44566789999999999998876 34578999999999999887653
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhcCC
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGAT 1524 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~~~ 1524 (2114)
+...+..+...+++..|++++|||+++ ..++++++...
T Consensus 168 ----f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~ 206 (212)
T d1qdea_ 168 ----FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN 206 (212)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred ----hHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 233444455556788999999999986 36777776543
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.88 E-value=4.4e-22 Score=230.10 Aligned_cols=186 Identities=17% Similarity=0.279 Sum_probs=141.1
Q ss_pred CCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-------CCC
Q 000129 1317 LDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETG 1389 (2114)
Q Consensus 1317 ldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-------~~~ 1389 (2114)
+.+.+.-..+|.. .||.+|+|+|.+|++.++++. |++++||||||||++|++|+++++.... ...
T Consensus 26 l~l~~~l~~~L~~-------~g~~~pt~iQ~~~ip~il~g~-dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~ 97 (238)
T d1wrba1 26 LKLDPTIRNNILL-------ASYQRPTPIQKNAIPAILEHR-DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 97 (238)
T ss_dssp GSCCCSTTTTTTT-------TTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CCCCHHHHHHHHH-------CCCCCCCHHHHHHhhhhhCCC-CEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCC
Confidence 3444444445543 379999999999999999854 5999999999999999999999986431 123
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc---hhhccCCcEEEEChhhHHHHHhhhccccccccee
Q 000129 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2114)
Q Consensus 1390 ~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2114)
++++++++|+++||.|+++.+. .++...++++..++|+.... ......++|+|+||+++..+++.. ...+.++.
T Consensus 98 ~~~alil~pt~el~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~--~~~l~~v~ 174 (238)
T d1wrba1 98 YPKCLILAPTRELAIQILSESQ-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCK 174 (238)
T ss_dssp CCSEEEECSSHHHHHHHHHHHH-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CceEEEeccchhhhcchheeee-ecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccC--ceeccccc
Confidence 4689999999999999999888 57777789999999887654 223345699999999999988763 44689999
Q ss_pred EEEecccccccCCCCchHHHHHHHHHHHHhhc----CCCceEEEEcccCCCh-hHHHH
Q 000129 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQV----ENKIRIVALSTSLANA-KDLGE 1519 (2114)
Q Consensus 1467 liIiDEaH~l~~~~g~~le~i~srl~~i~~~~----~~~~riV~lSATl~n~-~dla~ 1519 (2114)
++|+||||.+.+.+ +...+..+..++ +.+.|++++|||+++. +.+++
T Consensus 175 ~lViDEaD~ll~~~------f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~ 226 (238)
T d1wrba1 175 YIVLDEADRMLDMG------FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 226 (238)
T ss_dssp EEEEETHHHHHHTT------CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred eeeeehhhhhhhhc------cHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHH
Confidence 99999999887543 223333333322 2367999999999763 44544
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=8.7e-22 Score=223.23 Aligned_cols=184 Identities=23% Similarity=0.310 Sum_probs=150.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|+....+.+.. ||.+|||+|+++|+.++++.+ +++.||||||||++|++|+++++...... .++++++|+++++.+
T Consensus 8 L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vi~~a~tGsGKTlay~lp~i~~~~~~~~~--~~~~~~~~~~~~~~~ 84 (206)
T d1s2ma1 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKLNK--IQALIMVPTRELALQ 84 (206)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSCHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEecCCcchhhhhhcccccccccccccc--ccceeeccchhhhhh
Confidence 45566777766 799999999999999999765 99999999999999999999988774333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcccch--h-hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCc
Q 000129 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2114)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~l~G~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (2114)
....+. .++...++++...+|+..... . ....++|+|+||+++..+++. ....+.+++++|+||||.+.+.+
T Consensus 85 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~lV~DEaD~l~~~~-- 159 (206)
T d1s2ma1 85 TSQVVR-TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD-- 159 (206)
T ss_dssp HHHHHH-HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH--
T ss_pred hhhhhh-hcccccCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc--ceeecccceEEEeechhhhhhhh--
Confidence 998887 677778999999999876542 2 235569999999999998876 45578999999999999998653
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHhc
Q 000129 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (2114)
Q Consensus 1483 ~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl~ 1522 (2114)
+...+..+...+++..|++++|||+++ ..+++.++-
T Consensus 160 ----f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l 196 (206)
T d1s2ma1 160 ----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHL 196 (206)
T ss_dssp ----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred ----hHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHC
Confidence 455666676777888999999999974 345665543
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.4e-22 Score=224.93 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=148.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++.+.+++ .||.+|||+|++++|.++.+.+ +++.||||||||++|++|+++.+.... .+.++++++|
T Consensus 7 ~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vi~~a~tGsGKTlay~lp~i~~~~~~~--------~~~~~~~~~~ 77 (206)
T d1s2ma1 7 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVP 77 (206)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEecCCcchhhhhhcccccccccccc--------ccccceeecc
Confidence 3566666666 7999999999999999998865 999999999999999999999875442 3457899999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChhh---hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
+++++.+....+.......++++...+|+.....+. ...++|+|+||+++..+.+... ..+.+++++|+||||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~lV~DEaD~l 155 (206)
T d1s2ma1 78 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV--ADLSDCSLFIMDEADKM 155 (206)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEESHHHH
T ss_pred chhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccce--eecccceEEEeechhhh
Confidence 999999999999988888899999999988765442 3679999999999844444332 46889999999999999
Q ss_pred cc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000129 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2114)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~~ 683 (2114)
.+ ++++.++.|+.+ .+...|++++|||+| ..+.++.+..
T Consensus 156 ~~~~f~~~v~~I~~~-------l~~~~Q~il~SATl~--~~v~~~~~~~ 195 (206)
T d1s2ma1 156 LSRDFKTIIEQILSF-------LPPTHQSLLFSATFP--LTVKEFMVKH 195 (206)
T ss_dssp SSHHHHHHHHHHHTT-------SCSSCEEEEEESCCC--HHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHh-------CCCCCEEEEEEEeCC--HHHHHHHHHH
Confidence 88 577777766654 356789999999998 4455555443
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.85 E-value=2e-21 Score=221.13 Aligned_cols=181 Identities=21% Similarity=0.344 Sum_probs=141.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
.|++++.+++ .||++|+|+|++||+.++++.+ ++++||||||||++|++|+++.+.... .....++++|
T Consensus 7 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vii~a~TGSGKTlayllp~l~~~~~~~--------~~~~~~~~~~ 77 (209)
T d1q0ua_ 7 PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGES-MVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAP 77 (209)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-eEeecccccccceeeeeeecccccccc--------cccccccccc
Confidence 3677777777 6999999999999999988755 999999999999999999998875432 3457899999
Q ss_pred cHHHHHHHHHHHHHhhccC----CcEEEEEeCCCccChh---hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEec
Q 000129 559 MKALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
++.++.+.+..+....... ...+..+.|+.+...+ ...+++|+|+||+++..+.++.. ..+.+++++|+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~--~~~~~l~~lViDE 155 (209)
T d1q0ua_ 78 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDE 155 (209)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECS
T ss_pred ccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhc--cccccceEEEEee
Confidence 9999999998887655432 3556666666544332 23578999999999866655543 4678999999999
Q ss_pred cccccc-CCchhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000129 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2114)
Q Consensus 632 aH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~ 681 (2114)
||.+.+ +++..++.|+.+ .+++.|++++|||+|+ ++.++.+
T Consensus 156 ad~ll~~~f~~~v~~I~~~-------~~~~~Q~il~SATl~~--~v~~l~~ 197 (209)
T d1q0ua_ 156 ADLMLDMGFITDVDQIAAR-------MPKDLQMLVFSATIPE--KLKPFLK 197 (209)
T ss_dssp HHHHHHTTCHHHHHHHHHT-------SCTTCEEEEEESCCCG--GGHHHHH
T ss_pred cccccccccHHHHHHHHHH-------CCCCCEEEEEEccCCH--HHHHHHH
Confidence 999988 578877777654 3678999999999974 4444444
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.84 E-value=1.3e-20 Score=214.38 Aligned_cols=184 Identities=20% Similarity=0.257 Sum_probs=139.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHH
Q 000129 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2114)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q 1405 (2114)
|.....+.+.. ||.+|+|+|.+||+.++++++ ++++||||||||++|++|+++.+...... ...++++|++.++.+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vii~a~TGSGKTlayllp~l~~~~~~~~~--~~~~~~~~~~~~~~~ 84 (209)
T d1q0ua_ 8 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGES-MVGQSQTGTGKTHAYLLPIMEKIKPERAE--VQAVITAPTRELATQ 84 (209)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-eEeecccccccceeeeeeecccccccccc--ccccccccccchhHH
Confidence 44455555544 799999999999999999665 99999999999999999999988774333 388999999999999
Q ss_pred HHHHHHHHhcCC---CCcEEEEEcCCcccchh---hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1406 RYRDWEIKFGQG---LGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1406 ~~~~~~~~f~~~---~g~~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
.+.......... ....+..+.|..+.... ....++|+|+||+++..+.+++ ...+.++.++|+||||.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~--~~~~~~l~~lViDEad~ll~~ 162 (209)
T d1q0ua_ 85 IYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--ALDVHTAHILVVDEADLMLDM 162 (209)
T ss_dssp HHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--CCCGGGCCEEEECSHHHHHHT
T ss_pred HHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhh--ccccccceEEEEeeccccccc
Confidence 988777433322 23456666666554322 2245699999999999988773 446899999999999999875
Q ss_pred CCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC-hhHHHHHh
Q 000129 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2114)
Q Consensus 1480 ~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n-~~dla~wl 1521 (2114)
. +...+..+...++++.|++++|||+++ ..++++.+
T Consensus 163 ~------f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~ 199 (209)
T d1q0ua_ 163 G------FITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY 199 (209)
T ss_dssp T------CHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred c------cHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHH
Confidence 4 233344555566789999999999975 35566544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=9.1e-19 Score=197.49 Aligned_cols=180 Identities=21% Similarity=0.278 Sum_probs=131.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1339 f~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
+-+|+++|.+++..+.. +|+|+++|||||||+++.+++...+.. .++ ++||++|+++|+.|+++++++.+. ..
T Consensus 7 ~~~pr~~Q~~~~~~~~~--~n~lv~~pTGsGKT~i~~~~~~~~~~~--~~~--~il~i~P~~~L~~q~~~~~~~~~~-~~ 79 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLFN-LP 79 (200)
T ss_dssp HHCCCHHHHHHHHHGGG--SCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHBC-SC
T ss_pred CCCCCHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHHHh--cCC--cEEEEcCchHHHHHHHHHHHHhhc-cc
Confidence 34799999999998864 569999999999999999888777665 244 899999999999999999996554 34
Q ss_pred CcEEEEEcCCcccc--hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHh
Q 000129 1419 GMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~ 1496 (2114)
+.++...+++.... ...+...+++++||+.+...+.. ....++++++||+||||++.... ....+...+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~vIiDE~H~~~~~~--~~~~~~~~~~~--- 152 (200)
T d1wp9a1 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNY--AYVFIAREYKR--- 152 (200)
T ss_dssp GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTC--HHHHHHHHHHH---
T ss_pred ccceeeeecccchhHHHHhhhcccccccccchhHHHHhh--hhhhccccceEEEEehhhhhcch--hHHHHHHHHHh---
Confidence 67788888776654 23445678999999999877665 34567899999999999987554 12222222221
Q ss_pred hcCCCceEEEEcccCCC-hhHHHHHhcCCCCceeecCC
Q 000129 1497 QVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPP 1533 (2114)
Q Consensus 1497 ~~~~~~riV~lSATl~n-~~dla~wl~~~~~~~~~f~~ 1533 (2114)
...+.+++++|||+.+ ..++.++++......+.+..
T Consensus 153 -~~~~~~~l~~SATp~~~~~~~~~~~~~l~~~~i~~~~ 189 (200)
T d1wp9a1 153 -QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189 (200)
T ss_dssp -HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECC
T ss_pred -cCCCCcEEEEEecCCCcHHHHHHHHhcCCceEEEeCC
Confidence 2456899999999865 44566666544333344333
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=1.4e-18 Score=195.90 Aligned_cols=168 Identities=23% Similarity=0.289 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000129 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2114)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (2114)
-+|+++|.+++..+.. .|+|++||||||||+++++++...+.+. +.+++|++|+++|+.|+++++.++
T Consensus 8 ~~pr~~Q~~~~~~~~~--~n~lv~~pTGsGKT~i~~~~~~~~~~~~----------~~~il~i~P~~~L~~q~~~~~~~~ 75 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRL 75 (200)
T ss_dssp HCCCHHHHHHHHHGGG--SCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHHHhc----------CCcEEEEcCchHHHHHHHHHHHHh
Confidence 3789999999998764 4699999999999999998887776543 227999999999999999999999
Q ss_pred hccCCcEEEEEeCCCccChh--hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 574 LQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
+...+.++...+++...... .....+|+++||+.+....... ...++++++||+||||++.+..+. ..+....
T Consensus 76 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~--~~~~~~~~~vIiDE~H~~~~~~~~--~~~~~~~- 150 (200)
T d1wp9a1 76 FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGNYAY--VFIAREY- 150 (200)
T ss_dssp BCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTTCHH--HHHHHHH-
T ss_pred hcccccceeeeecccchhHHHHhhhcccccccccchhHHHHhhh--hhhccccceEEEEehhhhhcchhH--HHHHHHH-
Confidence 88778888888887665432 2356789999999984443332 256778999999999998764321 1122221
Q ss_pred HHHhhccccccEEEEccccCC-hHHHHHHHh
Q 000129 652 RQIETTKEHIRLVGLSATLPN-YEDVALFLR 681 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn-~~dva~~l~ 681 (2114)
.......++++||||+++ .+++.+++.
T Consensus 151 ---~~~~~~~~~l~~SATp~~~~~~~~~~~~ 178 (200)
T d1wp9a1 151 ---KRQAKNPLVIGLTASPGSTPEKIMEVIN 178 (200)
T ss_dssp ---HHHCSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred ---HhcCCCCcEEEEEecCCCcHHHHHHHHh
Confidence 123457799999999754 455555554
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.2e-19 Score=205.82 Aligned_cols=177 Identities=21% Similarity=0.251 Sum_probs=123.8
Q ss_pred CChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 482 MPEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 482 lp~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
|++-+++.+ .||++|+|+|.+|++.++.+ +|++++||||||||++|.+|++.. ..+++|++|
T Consensus 9 l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g-~~vlv~apTGsGKT~~~~~~~~~~--------------~~~~~~v~P 73 (206)
T d1oywa2 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSG-RDCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSP 73 (206)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECS
T ss_pred CCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCCCcchhhhhhhhc--------------cCceEEecc
Confidence 444444443 48999999999999998876 569999999999999999998753 127999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccChh-------hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEec
Q 000129 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2114)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~-------~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDE 631 (2114)
+++|+.|+.+.+...+. ......+....... .....+|+++||+++........ .....++++|+||
T Consensus 74 ~~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~--~~~~~v~~lviDE 147 (206)
T d1oywa2 74 LISLMKDQVDQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH--LAHWNPVLLAVDE 147 (206)
T ss_dssp CHHHHHHHHHHHHHTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHH--HTTSCEEEEEESS
T ss_pred chhhhhhHHHHHHhhcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhccc--chhheeeeeeeee
Confidence 99999999999987643 33333333221111 23468899999998732222211 3456789999999
Q ss_pred cccccc-CCchhHHH-HHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhcc
Q 000129 632 IHLLHD-NRGPVLES-IVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVN 683 (2114)
Q Consensus 632 aH~l~d-~rg~~le~-iv~rl~~~~~~~~~~~riv~lSATlpn~--~dva~~l~~~ 683 (2114)
+|++++ .++...+. .+.++ ....+++|+++||||+|+. +++.++|+..
T Consensus 148 aH~~~~~~~~~~~~~~~~~~l----~~~~~~~~ii~lSATl~~~v~~di~~~L~l~ 199 (206)
T d1oywa2 148 AHCISQWGHDFRPEYAALGQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLN 199 (206)
T ss_dssp GGGGCTTSSCCCHHHHGGGGH----HHHCTTSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred eeeeeccccchHHHHHHHHHH----HHhCCCCceEEEEeCCCHHHHHHHHHHcCCC
Confidence 999987 33332221 11222 1234578999999999873 5788998754
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.4e-19 Score=202.00 Aligned_cols=176 Identities=19% Similarity=0.310 Sum_probs=125.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHH
Q 000129 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2114)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~ 1409 (2114)
..++..| ||+.|+|+|.+|++.++++ +|+++++|||||||+||.+|++. ..+ +++|++|+++|+.|..+.
T Consensus 15 ~~l~~~f-g~~~~rp~Q~~ai~~~l~g-~~vlv~apTGsGKT~~~~~~~~~------~~~--~~~~v~P~~~L~~q~~~~ 84 (206)
T d1oywa2 15 QVLQETF-GYQQFRPGQEEIIDTVLSG-RDCLVVMPTGGGKSLCYQIPALL------LNG--LTVVVSPLISLMKDQVDQ 84 (206)
T ss_dssp HHHHHTT-CCSSCCTTHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHH------SSS--EEEEECSCHHHHHHHHHH
T ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCCCcchhhhhhhh------ccC--ceEEeccchhhhhhHHHH
Confidence 4455566 5999999999999999985 56999999999999999999874 234 899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcccc-------hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCC-
Q 000129 1410 WEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG- 1481 (2114)
Q Consensus 1410 ~~~~f~~~~g~~v~~l~G~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g- 1481 (2114)
++. ++. ......+..... .......+|+++||+.+...... ......+++++|+||+|++.+++.
T Consensus 85 l~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~--~~~~~~~v~~lviDEaH~~~~~~~~ 157 (206)
T d1oywa2 85 LQA-NGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL--EHLAHWNPVLLAVDEAHCISQWGHD 157 (206)
T ss_dssp HHH-TTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH--HHHTTSCEEEEEESSGGGGCTTSSC
T ss_pred HHh-hcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhc--ccchhheeeeeeeeeeeeeeccccc
Confidence 984 332 233333322211 11234568999999987554333 233567899999999999987642
Q ss_pred chHHHHHHHHHHHHhhcCCCceEEEEcccCCCh--hHHHHHhcCCC
Q 000129 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATS 1525 (2114)
Q Consensus 1482 ~~le~i~srl~~i~~~~~~~~riV~lSATl~n~--~dla~wl~~~~ 1525 (2114)
...+. ..+..+... .++.|+++||||+++. +|+.+|++...
T Consensus 158 ~~~~~--~~~~~l~~~-~~~~~ii~lSATl~~~v~~di~~~L~l~~ 200 (206)
T d1oywa2 158 FRPEY--AALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLND 200 (206)
T ss_dssp CCHHH--HGGGGHHHH-CTTSCEEEEESCCCHHHHHHHHHHHTCCS
T ss_pred hHHHH--HHHHHHHHh-CCCCceEEEEeCCCHHHHHHHHHHcCCCC
Confidence 22221 122222222 2468999999999874 58999998764
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=1.5e-19 Score=209.75 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=124.3
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHH
Q 000129 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~ 1408 (2114)
+.++++|. ++.+|+++|.++++.++.+. +++++||||||||+++.++++..... ++ +++||+|+++|+.|+++
T Consensus 31 ~~~~~~~~~~~~~p~~~Q~~~i~~~l~g~-~~~i~apTGsGKT~~~~~~~~~~~~~---~~--rvliv~Pt~~La~Q~~~ 104 (237)
T d1gkub1 31 KEFVEFFRKCVGEPRAIQKMWAKRILRKE-SFAATAPTGVGKTSFGLAMSLFLALK---GK--RCYVIFPTSLLVIQAAE 104 (237)
T ss_dssp HHHHHHHHTTTCSCCHHHHHHHHHHHTTC-CEECCCCBTSCSHHHHHHHHHHHHTT---SC--CEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHCCC-CEEEEecCCChHHHHHHHHHHHHHHh---cC--eEEEEeccHHHHHHHHH
Confidence 34677776 68899999999999999854 59999999999999999998876654 44 89999999999999999
Q ss_pred HHHHHhcCCCCcE----EEEEcCCcccc-----hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCC
Q 000129 1409 DWEIKFGQGLGMR----VVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~----v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (2114)
++++.+ +..+++ +....++.... ......++|+|+||+++.. + ...++++++||+||+|.+.+.
T Consensus 105 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~---~---~~~~~~~~~vVvDE~d~~l~~ 177 (237)
T d1gkub1 105 TIRKYA-EKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK---H---YRELGHFDFIFVDDVDAILKA 177 (237)
T ss_dssp HHHHHH-TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH---C---STTSCCCSEEEESCHHHHHTS
T ss_pred HHHHHH-HHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHH---h---hhhcCCCCEEEEEChhhhhhc
Confidence 998544 333443 33344443322 1223456899999997542 2 234678999999999988654
Q ss_pred CCchHHHHHHHH------HHHHhhcCCCceEEEEcccCCChh---HHHHHhcC
Q 000129 1480 GGPVLEVIVSRM------RYIASQVENKIRIVALSTSLANAK---DLGEWIGA 1523 (2114)
Q Consensus 1480 ~g~~le~i~srl------~~i~~~~~~~~riV~lSATl~n~~---dla~wl~~ 1523 (2114)
. ..+......+ +.+....+...++|++|||+++.. -+.+++|-
T Consensus 178 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 178 S-KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp T-HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred c-cchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhCC
Confidence 3 2222222221 111222345778999999997632 23455553
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=1.5e-19 Score=209.60 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=119.4
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000129 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2114)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (2114)
+...| .++.+|+++|.++++.++.+. +++++||||+|||++++++++.....+ .+++||+|+++|+.
T Consensus 33 ~~~~~~~~~~~p~~~Q~~~i~~~l~g~-~~~i~apTGsGKT~~~~~~~~~~~~~~-----------~rvliv~Pt~~La~ 100 (237)
T d1gkub1 33 FVEFFRKCVGEPRAIQKMWAKRILRKE-SFAATAPTGVGKTSFGLAMSLFLALKG-----------KRCYVIFPTSLLVI 100 (237)
T ss_dssp HHHHHHTTTCSCCHHHHHHHHHHHTTC-CEECCCCBTSCSHHHHHHHHHHHHTTS-----------CCEEEEESCHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHCCC-CEEEEecCCChHHHHHHHHHHHHHHhc-----------CeEEEEeccHHHHH
Confidence 45555 678899999999999998764 599999999999999999988776432 37999999999999
Q ss_pred HHHHHHHHhhccCCcEE----EEEeCCCccChh-----hhccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 565 EVVGNLSNRLQMYDVKV----RELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 565 q~~~~~~~~~~~~gi~v----~~l~Gd~~~~~~-----~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
|+++++++++..+|+.+ ....++.....+ ....++|+|+||+++ .+.. ..++++++|||||||.+
T Consensus 101 Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l---~~~~---~~~~~~~~vVvDE~d~~ 174 (237)
T d1gkub1 101 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFL---SKHY---RELGHFDFIFVDDVDAI 174 (237)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH---HHCS---TTSCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHH---HHhh---hhcCCCCEEEEEChhhh
Confidence 99999999887776553 333333332221 124678999999964 3332 34567899999999988
Q ss_pred ccCCchhHHHHHHHH------HHHHhhccccccEEEEccccCC
Q 000129 636 HDNRGPVLESIVART------VRQIETTKEHIRLVGLSATLPN 672 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl------~~~~~~~~~~~riv~lSATlpn 672 (2114)
.+.. ..+..++..+ ...........+++++|||+++
T Consensus 175 l~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (237)
T d1gkub1 175 LKAS-KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKK 216 (237)
T ss_dssp HTST-HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCC
T ss_pred hhcc-cchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence 7532 2222222211 0011122446679999999986
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.6e-18 Score=189.70 Aligned_cols=125 Identities=20% Similarity=0.353 Sum_probs=110.4
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
....+.++||||+|++.++.++..|...+. .+..+||+|+..+
T Consensus 26 ~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~-------------------------------------~~~~~h~~~~~~~ 68 (200)
T d1oywa3 26 QEQRGKSGIIYCNSRAKVEDTAARLQSKGI-------------------------------------SAAAYHAGLENNV 68 (200)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTSCHHH
T ss_pred HhcCCCCEEEEEeeehhhHHhhhhhccCCc-------------------------------------eeEEecCCCcHHH
Confidence 334567899999999999999998876542 3567799999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|+++|||||+++++|||+|++++||+ |+++. ++.+|+||+|||||.| ..|.+++++++
T Consensus 69 r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~----~~~P~------~~~~y~qr~GR~gR~g--~~g~ai~~~~~ 136 (200)
T d1oywa3 69 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQETGRAGRDG--LPAEAMLFYDP 136 (200)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHHHHHTTSCTTS--SCEEEEEEECH
T ss_pred HHHHHHHHhcccceEEEecchhhhccCCCCCCEEEE----CCCcc------chHHHHHHhhhhhcCC--CCceEEEecCH
Confidence 999999999999999999999999999999999999 77776 8899999999999987 78999999999
Q ss_pred CcHHHHHHhhcCCC
Q 000129 889 SELRYYLSLMNQQL 902 (2114)
Q Consensus 889 ~e~~~~~~ll~~~~ 902 (2114)
.+..++.+++.+..
T Consensus 137 ~d~~~l~~~i~~~~ 150 (200)
T d1oywa3 137 ADMAWLRRCLEEKP 150 (200)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHhhhhccc
Confidence 88888887765543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=3.1e-18 Score=185.14 Aligned_cols=119 Identities=18% Similarity=0.357 Sum_probs=99.9
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+.....++||||+|+..++.++..|...+. .+..+||+|++.+
T Consensus 23 ~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~-------------------------------------~~~~~~~~~~~~~ 65 (162)
T d1fuka_ 23 DSISVTQAVIFCNTRRKVEELTTKLRNDKF-------------------------------------TVSAIYSDLPQQE 65 (162)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTSCHHH
T ss_pred HhCCCCcEEEEEEEEchHHHHHHHHhhcCc-------------------------------------eEEEeccCCchhh
Confidence 445678999999999999999999876543 3567799999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2114)
|..+++.|++|.++|||||+++++|+|+|++++||+ ||+|. ++..|+||+||+||.| ..|.|+.++++
T Consensus 66 r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~----~d~P~------~~~~yihR~GR~gR~g--~~g~~i~~~~~ 133 (162)
T d1fuka_ 66 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGGRFG--RKGVAINFVTN 133 (162)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------SGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHhhcccceeeccccccccccCCCceEEEE----eccch------hHHHHHhhccccccCC--CccEEEEEcCH
Confidence 999999999999999999999999999999999999 66554 6667999999999987 67999999998
Q ss_pred CcHHHHHH
Q 000129 889 SELRYYLS 896 (2114)
Q Consensus 889 ~e~~~~~~ 896 (2114)
.+...+..
T Consensus 134 ~d~~~~~~ 141 (162)
T d1fuka_ 134 EDVGAMRE 141 (162)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 87665544
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.5e-17 Score=181.72 Aligned_cols=140 Identities=24% Similarity=0.371 Sum_probs=114.1
Q ss_pred ceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000129 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2114)
Q Consensus 700 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~ 779 (2114)
+.+.++.+... .+...+.+ +++..+.+++||||+|++.+..++..|...+.
T Consensus 7 i~q~yi~v~~~---~K~~~L~~-----ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~--------------------- 57 (171)
T d1s2ma2 7 ITQYYAFVEER---QKLHCLNT-----LFSKLQINQAIIFCNSTNRVELLAKKITDLGY--------------------- 57 (171)
T ss_dssp EEEEEEECCGG---GHHHHHHH-----HHHHSCCSEEEEECSSHHHHHHHHHHHHHHTC---------------------
T ss_pred eEEEEEEcCHH---HHHHHHHH-----HHHhCCCCceEEEEeeeehhhHhHHhhhcccc---------------------
Confidence 45555554432 33443333 23445678999999999999999999987542
Q ss_pred hhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccC
Q 000129 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2114)
Q Consensus 780 ~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2114)
.+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ ||++.
T Consensus 58 ----------------~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~----~d~p~------ 111 (171)
T d1s2ma2 58 ----------------SCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK------ 111 (171)
T ss_dssp ----------------CEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS------
T ss_pred ----------------cccccccccchhhhhhhhhhcccCccccccchhHhhhccccceeEEEEe----cCCcc------
Confidence 3566799999999999999999999999999999999999999999999 77775
Q ss_pred CHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
++.+|+||+||+||.| ..|.++.+++..+...+..
T Consensus 112 ~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e~~~~~~ 146 (171)
T d1s2ma2 112 TAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYK 146 (171)
T ss_dssp SHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHH
T ss_pred hHHHHHHHhhhcccCC--CccEEEEEeCHHHHHHHHH
Confidence 7889999999999976 7799999999887666554
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.7e-18 Score=182.98 Aligned_cols=142 Identities=21% Similarity=0.387 Sum_probs=114.3
Q ss_pred cceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHH
Q 000129 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778 (2114)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~ 778 (2114)
.+++.++.+... ..++..+.++ .+.....++||||++++.++.++..|...+.
T Consensus 7 ~i~q~~v~v~~~--~~K~~~L~~l-----l~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~-------------------- 59 (168)
T d2j0sa2 7 GIKQFFVAVERE--EWKFDTLCDL-----YDTLTITQAVIFCNTKRKVDWLTEKMREANF-------------------- 59 (168)
T ss_dssp TEEEEEEEESST--THHHHHHHHH-----HHHHTSSEEEEECSSHHHHHHHHHHHHHTTC--------------------
T ss_pred CcEEEEEEecCh--HHHHHHHHHH-----HHhCCCCceEEEeeeHHHHHHHHHHhhhccc--------------------
Confidence 345555544332 2344443332 2444577999999999999999999887543
Q ss_pred hhhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCcccc
Q 000129 779 SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858 (2114)
Q Consensus 779 ~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~ 858 (2114)
.+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ ||+|.
T Consensus 60 -----------------~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn----~d~P~----- 113 (168)
T d2j0sa2 60 -----------------TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN----- 113 (168)
T ss_dssp -----------------CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS-----
T ss_pred -----------------chhhhhhhhhHHHHHHHHHHHhcCCccEEeccchhcccccccCcceEEE----ecCCc-----
Confidence 2466799999999999999999999999999999999999999999999 77776
Q ss_pred CCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHHHHHH
Q 000129 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2114)
Q Consensus 859 ~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~~~~~ 896 (2114)
+...|+||+||+||.| ..|.++.++++.+...+..
T Consensus 114 -~~~~yihR~GR~gR~g--~~G~~i~~~~~~d~~~~~~ 148 (168)
T d2j0sa2 114 -NRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILRD 148 (168)
T ss_dssp -SHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHHH
T ss_pred -CHHHHHhhhccccccC--CCcEEEEEECHHHHHHHHH
Confidence 7889999999999977 6799999999888765543
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=1.4e-17 Score=179.07 Aligned_cols=114 Identities=23% Similarity=0.461 Sum_probs=101.7
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
+.++||||+|++.|+.++..|...+. .+..+||+++..+|..+
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~g~-------------------------------------~~~~~~~~~~~~~r~~~ 70 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDIGF-------------------------------------KAGAIHGDLSQSQREKV 70 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECSSSCHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHhhhccccc-------------------------------------ccccccccchhhhhhhh
Confidence 56899999999999999999986542 35677999999999999
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCcHH
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e~~ 892 (2114)
++.|++|..+|||||+++++|+|+|++++||+ ||+|. |+..|+||+||+||.| ..|.++.+++..+..
T Consensus 71 ~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~----~d~p~------~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~ 138 (155)
T d1hv8a2 71 IRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ------NPESYMHRIGRTGRAG--KKGKAISIINRREYK 138 (155)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS------CHHHHHHHSTTTCCSS--SCCEEEEEECTTSHH
T ss_pred hhhhhcccceeeeehhHHhhhhhhccCcEEEE----ecCCC------CHHHHHHHHHhcCcCC--CCceEEEEEchHHHH
Confidence 99999999999999999999999999999999 77775 8889999999999987 679999999887765
Q ss_pred HHH
Q 000129 893 YYL 895 (2114)
Q Consensus 893 ~~~ 895 (2114)
.+.
T Consensus 139 ~~~ 141 (155)
T d1hv8a2 139 KLR 141 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.3e-17 Score=180.24 Aligned_cols=127 Identities=12% Similarity=0.232 Sum_probs=107.5
Q ss_pred HHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHH
Q 000129 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2114)
Q Consensus 1567 i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~ 1646 (2114)
+... .+.+++||||+|++.|+.++..|.. .+..+..+||+|+..
T Consensus 21 ll~~-~~~~k~iIF~~s~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~~~~~~ 64 (162)
T d1fuka_ 21 LYDS-ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYSDLPQQ 64 (162)
T ss_dssp HHHH-TTCSCEEEEESSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHH
T ss_pred HHHh-CCCCcEEEEEEEEchHHHHHHHHhh-----------------------------------cCceEEEeccCCchh
Confidence 3344 4568899999999999999876632 244689999999999
Q ss_pred HHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
+|..+++.|+.|+++|||||+++++|+|+|++.+|| +++.|.++..|+||+||+||. +..|.|+.++.
T Consensus 65 ~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI----------~~d~P~~~~~yihR~GR~gR~--g~~g~~i~~~~ 132 (162)
T d1fuka_ 65 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRF--GRKGVAINFVT 132 (162)
T ss_dssp HHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----------ESSCCSSGGGGGGSSCSCC-------CEEEEEEE
T ss_pred hHHHHHHHHhhcccceeeccccccccccCCCceEEE----------EeccchhHHHHHhhccccccC--CCccEEEEEcC
Confidence 999999999999999999999999999999999999 999999999999999999998 67999999999
Q ss_pred cCcHHHHHHHHHhcc
Q 000129 1727 APRKEYYKKFLRLTQ 1741 (2114)
Q Consensus 1727 ~~~~~~~~~~lRl~~ 1741 (2114)
+.+...++.+.+..+
T Consensus 133 ~~d~~~~~~i~~~~~ 147 (162)
T d1fuka_ 133 NEDVGAMRELEKFYS 147 (162)
T ss_dssp TTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHc
Confidence 988877776665444
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=2.4e-17 Score=176.86 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=99.8
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
..+.++||||+|++.|+.++..|.+.++. +.++||+|+..+|.
T Consensus 29 ~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~-------------------------------------a~~~Hg~~~~~eR~ 71 (174)
T d1c4oa2 29 ARGERTLVTVLTVRMAEELTSFLVEHGIR-------------------------------------ARYLHHELDAFKRQ 71 (174)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------EEEECTTCCHHHHH
T ss_pred hcCCcEEEEEcchhHHHHHHHHHHhcCCc-------------------------------------eEEEecccchHHHH
Confidence 45789999999999999999999987654 45669999999999
Q ss_pred HHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
.+++.|++|+++|||||+++++|+|+|++++||+ |++++. ....|..+|+||+|||||.| .|.+++++....
T Consensus 72 ~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~----~~~~~~-~~~~~~~~~iq~~GR~gR~~---~g~~~~~~~~~~ 143 (174)
T d1c4oa2 72 ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKE-GFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 143 (174)
T ss_dssp HHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSC-SGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEE----eccccc-cccchhHHHHHHhhhhhhcC---CCeeEEeecCCC
Confidence 9999999999999999999999999999999999 776642 23457889999999999975 588888876544
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=5.3e-17 Score=177.43 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=110.3
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
.+.+++||||+|++.|..++..|.. .+..+..+||+|+..+|..+
T Consensus 30 ~~~~k~iVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~~h~~~~~~~r~~~ 74 (171)
T d1s2ma2 30 LQINQAIIFCNSTNRVELLAKKITD-----------------------------------LGYSCYYSHARMKQQERNKV 74 (171)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEECTTSCHHHHHHH
T ss_pred CCCCceEEEEeeeehhhHhHHhhhc-----------------------------------ccccccccccccchhhhhhh
Confidence 4667899999999999998876632 35678999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|.++|||||+++++|+|+|.+.+|| +++.|.++..|+||+||+||. +..|.|+.|+.+.+..
T Consensus 75 ~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI----------~~d~p~~~~~y~qr~GR~gR~--g~~g~~i~~v~~~e~~ 142 (171)
T d1s2ma2 75 FHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----------NFDFPKTAETYLHRIGRSGRF--GHLGLAINLINWNDRF 142 (171)
T ss_dssp HHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHCBSSCT--TCCEEEEEEECGGGHH
T ss_pred hhhcccCccccccchhHhhhccccceeEEEE----------ecCCcchHHHHHHHhhhcccC--CCccEEEEEeCHHHHH
Confidence 9999999999999999999999999999999 899999999999999999997 6789999999998888
Q ss_pred HHHHHHHhcc
Q 000129 1732 YYKKFLRLTQ 1741 (2114)
Q Consensus 1732 ~~~~~lRl~~ 1741 (2114)
.++.+.+...
T Consensus 143 ~~~~i~~~l~ 152 (171)
T d1s2ma2 143 NLYKIEQELG 152 (171)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 8777765443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.8e-17 Score=183.30 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=108.3
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.++||||+|++.|..++..|.. .+..+..+||+|+..+|..+
T Consensus 28 ~~~~~~IIF~~t~~~~~~l~~~l~~-----------------------------------~~~~~~~~h~~~~~~~r~~~ 72 (200)
T d1oywa3 28 QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------KGISAAAYHAGLENNVRADV 72 (200)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred cCCCCEEEEEeeehhhHHhhhhhcc-----------------------------------CCceeEEecCCCcHHHHHHH
Confidence 4567899999999999998866632 24568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|+++|||||+++++|+|+|++.+|| |++.|.++.+|+||+|||||. +..|.|++|+.+.+..
T Consensus 73 ~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI----------~~~~P~~~~~y~qr~GR~gR~--g~~g~ai~~~~~~d~~ 140 (200)
T d1oywa3 73 QEKFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRD--GLPAEAMLFYDPADMA 140 (200)
T ss_dssp HHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----------ESSCCSSHHHHHHHHTTSCTT--SSCEEEEEEECHHHHH
T ss_pred HHHHhcccceEEEecchhhhccCCCCCCEEE----------ECCCccchHHHHHHhhhhhcC--CCCceEEEecCHHHHH
Confidence 9999999999999999999999999999999 999999999999999999998 6899999999988877
Q ss_pred HHHHHHH
Q 000129 1732 YYKKFLR 1738 (2114)
Q Consensus 1732 ~~~~~lR 1738 (2114)
++++++.
T Consensus 141 ~l~~~i~ 147 (200)
T d1oywa3 141 WLRRCLE 147 (200)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 7777663
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.6e-17 Score=177.66 Aligned_cols=121 Identities=12% Similarity=0.216 Sum_probs=107.7
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
....++||||++++.|..++..|.. .+..+..+||+++..+|..+
T Consensus 32 ~~~~k~iiF~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 76 (168)
T d2j0sa2 32 LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------ANFTVSSMHGDMPQKERESI 76 (168)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCCEEECTTSCHHHHHHH
T ss_pred CCCCceEEEeeeHHHHHHHHHHhhh-----------------------------------cccchhhhhhhhhHHHHHHH
Confidence 3567899999999999988866632 34568899999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHH
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~ 1731 (2114)
++.|++|+++|||||+++++|+|+|++.+|| +++.|.+...|+||+||+||. +..|.|+.++.+.+..
T Consensus 77 ~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VI----------n~d~P~~~~~yihR~GR~gR~--g~~G~~i~~~~~~d~~ 144 (168)
T d2j0sa2 77 MKEFRSGASRVLISTDVWARGLDVPQVSLII----------NYDLPNNRELYIHRIGRSGRY--GRKGVAINFVKNDDIR 144 (168)
T ss_dssp HHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHTTSSGG--GCCEEEEEEEEGGGHH
T ss_pred HHHHhcCCccEEeccchhcccccccCcceEE----------EecCCcCHHHHHhhhcccccc--CCCcEEEEEECHHHHH
Confidence 9999999999999999999999999999999 999999999999999999997 6789999999998877
Q ss_pred HHHHHHHh
Q 000129 1732 YYKKFLRL 1739 (2114)
Q Consensus 1732 ~~~~~lRl 1739 (2114)
.++.+.+.
T Consensus 145 ~~~~i~~~ 152 (168)
T d2j0sa2 145 ILRDIEQY 152 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655543
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=7.4e-17 Score=173.08 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
++..+.+....+.++||||+|++.|+.++..|.. .+..+.++||+
T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~-----------------------------------~Gi~a~~~Hg~ 64 (174)
T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVE-----------------------------------HGIRARYLHHE 64 (174)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT
T ss_pred HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHh-----------------------------------cCCceEEEecc
Confidence 4555666657789999999999999999977733 24568999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|++.+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+.. ....+.+..+|+||+|||||. ..|.++
T Consensus 65 ~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi----~~~~~-~~~~~~~~~~~iq~~GR~gR~---~~g~~~ 136 (174)
T d1c4oa2 65 LDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---ARGEVW 136 (174)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE----ETTTT-SCSGGGSHHHHHHHHGGGTTS---TTCEEE
T ss_pred cchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEE----Eeccc-cccccchhHHHHHHhhhhhhc---CCCeeE
Confidence 9999999999999999999999999999999999999999 12221 112456778999999999995 468888
Q ss_pred EEeecCc
Q 000129 1723 ILCHAPR 1729 (2114)
Q Consensus 1723 il~~~~~ 1729 (2114)
+++....
T Consensus 137 ~~~~~~~ 143 (174)
T d1c4oa2 137 LYADRVS 143 (174)
T ss_dssp EECSSCC
T ss_pred EeecCCC
Confidence 8876554
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.4e-17 Score=179.24 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=109.0
Q ss_pred ceeEEEeeccCchhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000129 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2114)
Q Consensus 700 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~ 779 (2114)
+.++|+.+... .+...+.+ +++....+++||||++++.++.++..|...+.
T Consensus 2 l~q~~v~~~~~---~K~~~L~~-----ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~--------------------- 52 (168)
T d1t5ia_ 2 LQQYYVKLKDN---EKNRKLFD-----LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF--------------------- 52 (168)
T ss_dssp CEEEEEECCGG---GHHHHHHH-----HHHHSCCSSEEEECSSHHHHHHHHHHHHHTTC---------------------
T ss_pred cEEEEEEeChH---HHHHHHHH-----HHHhCCCCeEEEEEeeeecchhhhhhhccccc---------------------
Confidence 45666655543 33333332 23344577999999999999999998876542
Q ss_pred hhcccCcchhhhhccCceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccC
Q 000129 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2114)
Q Consensus 780 ~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2114)
.+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ ||++.
T Consensus 53 ----------------~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~----~~~p~------ 106 (168)
T d1t5ia_ 53 ----------------PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------ 106 (168)
T ss_dssp ----------------CEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------
T ss_pred ----------------cccccccccchhhhhhhhhhhccccceeeeccccccchhhcccchhhhh----hhccc------
Confidence 3567799999999999999999999999999999999999999999998 77775
Q ss_pred CHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
++..|+||+|||||.| ..|.||.++++.+
T Consensus 107 ~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 107 DSDTYLHRVARAGRFG--TKGLAITFVSDEN 135 (168)
T ss_dssp SHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred chhhHhhhhhhcccCC--CccEEEEEECchH
Confidence 7889999999999976 6799998887654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=5.3e-17 Score=174.47 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=107.4
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
.+.++||||+|++.|+.++..|.. .+..+..+|++++..+|..++
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~-----------------------------------~g~~~~~~~~~~~~~~r~~~~ 71 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRD-----------------------------------IGFKAGAIHGDLSQSQREKVI 71 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECSSSCHHHHHHHH
T ss_pred CCCCEEEEECchHHHHHHHhhhcc-----------------------------------cccccccccccchhhhhhhhh
Confidence 456899999999999998876632 245689999999999999999
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCcHHH
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~~~~ 1732 (2114)
+.|++|+.+|||||+++++|+|+|++.+|| +++.|.++.+|+||+||+||. +..|.++.++.+.+...
T Consensus 72 ~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi----------~~d~p~~~~~y~qr~GR~gR~--g~~g~~i~~~~~~d~~~ 139 (155)
T d1hv8a2 72 RLFKQKKIRILIATDVMSRGIDVNDLNCVI----------NYHLPQNPESYMHRIGRTGRA--GKKGKAISIINRREYKK 139 (155)
T ss_dssp HHHHTTSSSEEEECTTHHHHCCCSCCSEEE----------ESSCCSCHHHHHHHSTTTCCS--SSCCEEEEEECTTSHHH
T ss_pred hhhhcccceeeeehhHHhhhhhhccCcEEE----------EecCCCCHHHHHHHHHhcCcC--CCCceEEEEEchHHHHH
Confidence 999999999999999999999999999999 899999999999999999997 57899999999888777
Q ss_pred HHHHHHhc
Q 000129 1733 YKKFLRLT 1740 (2114)
Q Consensus 1733 ~~~~lRl~ 1740 (2114)
++.+.+.+
T Consensus 140 ~~~i~~~~ 147 (155)
T d1hv8a2 140 LRYIERAM 147 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555443
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.67 E-value=1.3e-16 Score=174.15 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+++..++.++..|...+. .+.++||+|++.+|..
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~-------------------------------------~~~~~hg~~~~~eR~~ 72 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGI-------------------------------------KVAYLHSEIKTLERIE 72 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTC-------------------------------------CEEEECSSCCHHHHHH
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCc-------------------------------------ceeEecCCccHHHHHH
Confidence 467999999999999999999886553 3567899999999999
Q ss_pred HHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
+++.|++|+++|||||+++++|+|+|++++||+ ||++.. ....|..+|+||+|||||.| .|.++++....
T Consensus 73 ~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~p~~-~~~~s~~~yi~R~GRagR~g---~~~~~~~~~~~ 142 (181)
T d1t5la2 73 IIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKE-GFLRSERSLIQTIGRAARNA---NGHVIMYADTI 142 (181)
T ss_dssp HHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEE----TTTTSC-SGGGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred HHHHHHCCCCCEEEehhHHHccCCCCCCCEEEE----ecCCcc-cccccHHHHHHHHHhhcccc---CceeEeecchh
Confidence 999999999999999999999999999999999 665531 12357899999999999976 35555555443
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.67 E-value=2.3e-16 Score=172.30 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
+..+.+....+.++||||+++..++.++..|.. .+..+.++||+|
T Consensus 21 l~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~-----------------------------------~g~~~~~~hg~~ 65 (181)
T d1t5la2 21 IGEIRERVERNERTLVTTLTKKMAEDLTDYLKE-----------------------------------AGIKVAYLHSEI 65 (181)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECSSC
T ss_pred HHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHh-----------------------------------CCcceeEecCCc
Confidence 444555556788999999999999999876632 345689999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-----CCHhHHHHhHcccCCCCCCCc
Q 000129 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-----YPVTDLLQMMGHASRPLLDNS 1718 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-----~s~~~~lQr~GRAGR~~~~~~ 1718 (2114)
++.+|..+++.|++|+++|||||+++++|+|+|++.+|| +++.| ++..+|+||+|||||.| .
T Consensus 66 ~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI----------~~d~p~~~~~~s~~~yi~R~GRagR~g---~ 132 (181)
T d1t5la2 66 KTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA----------ILDADKEGFLRSERSLIQTIGRAARNA---N 132 (181)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEE----------ETTTTSCSGGGSHHHHHHHHGGGTTST---T
T ss_pred cHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEE----------EecCCcccccccHHHHHHHHHhhcccc---C
Confidence 999999999999999999999999999999999999999 77777 47899999999999963 5
Q ss_pred eEEEEEeecCc
Q 000129 1719 GKCVILCHAPR 1729 (2114)
Q Consensus 1719 G~~iil~~~~~ 1729 (2114)
|.++++.....
T Consensus 133 ~~~~~~~~~~~ 143 (181)
T d1t5la2 133 GHVIMYADTIT 143 (181)
T ss_dssp CEEEEECSSCC
T ss_pred ceeEeecchhh
Confidence 66666655443
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.1e-16 Score=170.41 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=99.6
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
...+++||||++++.+..++..|.. .+..+.++||+|++.+|..+
T Consensus 25 ~~~~k~iIF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~ihg~~~~~~r~~~ 69 (168)
T d1t5ia_ 25 LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAIAIHRGMPQEERLSR 69 (168)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEEeeeecchhhhhhhcc-----------------------------------ccccccccccccchhhhhhh
Confidence 3567899999999999888866632 34568999999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
++.|++|.++|||||+++++|+|+|.+.+|| +++.|.+...|+||+|||||. +..|.|+.++.+..
T Consensus 70 l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi----------~~~~p~~~~~yiqr~GR~gR~--g~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 70 YQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRF--GTKGLAITFVSDEN 135 (168)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----------ESSCCSSHHHHHHHHHHHTGG--GCCCEEEEEECSHH
T ss_pred hhhhccccceeeeccccccchhhcccchhhh----------hhhcccchhhHhhhhhhcccC--CCccEEEEEECchH
Confidence 9999999999999999999999999999999 899999999999999999997 67899999887654
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.59 E-value=5.7e-16 Score=161.39 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=88.5
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
..++++||||+|++.|+.++..|...+.. +..+|++|+..+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~-------------------------------------~~~~H~~~~~~~-- 73 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGIN-------------------------------------AVAYYRGLDVSV-- 73 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCE-------------------------------------EEEECTTCCSCC--
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccc-------------------------------------hhhhhccchhhh--
Confidence 34779999999999999999999876533 456699998654
Q ss_pred HHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCCc
Q 000129 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2114)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~e 890 (2114)
|++|..+|||||+++++||| |++..||+.+..|+++. +..+|+||+||||| | ..|. +.+..+.|
T Consensus 74 -----~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~------~~~~y~qr~GR~gR-g--~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 74 -----IPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQ------DAVSRTQRRGRTGR-G--KPGI-YRFVAPGE 137 (138)
T ss_dssp -----CTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEEC------CHHHHHHHHTTBCS-S--SCEE-EEECCSSC
T ss_pred -----hhhhhcceeehhHHHHhccc-cccceEEEEEecCCCCC------CHHHHHhHhccccC-C--CCcE-EEEEcCCC
Confidence 68899999999999999999 99999999888788776 89999999999999 6 6785 55555543
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.56 E-value=3.4e-15 Score=175.96 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|+++|.+++..++..+ +.++.+|||+|||+++...+....... +.++|||+|+++|+.|++++|.+.+
T Consensus 113 ~~rdyQ~~av~~~l~~~-~~il~~pTGsGKT~i~~~i~~~~~~~~----------~~k~Liivp~~~Lv~Q~~~~f~~~~ 181 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNR-RRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHS-EEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcC-CceeEEEcccCccHHHHHHHHHhhhcc----------cceEEEEEcCchhHHHHHHHHHHhh
Confidence 79999999999998765 589999999999999876554433332 2389999999999999999999876
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~ 654 (2114)
......+....++...........+|+|+|++.+ .+. ...+++++++||+||||+.. +..+..++.++
T Consensus 182 ~~~~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~---~~~--~~~~~~~f~~VIvDEaH~~~---a~~~~~il~~~---- 249 (282)
T d1rifa_ 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLAT---GKSISSIISGL---- 249 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHH---TTS--CGGGGGGEEEEEEETGGGCC---HHHHHHHTTTC----
T ss_pred ccccccceeecceecccccccccceEEEEeeehh---hhh--cccccCCCCEEEEECCCCCC---chhHHHHHHhc----
Confidence 5444456666666554444455789999998853 222 22467889999999999864 44454444322
Q ss_pred hhccccccEEEEccccCCh
Q 000129 655 ETTKEHIRLVGLSATLPNY 673 (2114)
Q Consensus 655 ~~~~~~~riv~lSATlpn~ 673 (2114)
......+|||||+++.
T Consensus 250 ---~~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 250 ---NNCMFKFGLSGSLRDG 265 (282)
T ss_dssp ---TTCCEEEEECSSCCTT
T ss_pred ---cCCCeEEEEEeecCCC
Confidence 2222248999998753
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.55 E-value=7.7e-15 Score=172.91 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.|+++|.+++..++.. ++.++.+|||+|||+++...+...+.. ... ++|||||+++|+.|+++++. .++.....
T Consensus 113 ~~rdyQ~~av~~~l~~-~~~il~~pTGsGKT~i~~~i~~~~~~~--~~~--k~Liivp~~~Lv~Q~~~~f~-~~~~~~~~ 186 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred ccchHHHHHHHHHHhc-CCceeEEEcccCccHHHHHHHHHhhhc--ccc--eEEEEEcCchhHHHHHHHHH-Hhhccccc
Confidence 6999999999999874 458999999999999986554333333 234 89999999999999999998 45543344
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
.+..+.++.....+.....+|+++|++.+.... ...++++++||+||||+.. +..+ ..+...+.+
T Consensus 187 ~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~-----~~~~~~f~~VIvDEaH~~~---a~~~-------~~il~~~~~ 251 (282)
T d1rifa_ 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP-----KEWFSQFGMMMNDECHLAT---GKSI-------SSIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC-----GGGGGGEEEEEEETGGGCC---HHHH-------HHHTTTCTT
T ss_pred cceeecceecccccccccceEEEEeeehhhhhc-----ccccCCCCEEEEECCCCCC---chhH-------HHHHHhccC
Confidence 566666666555555556799999988754332 3356789999999999874 2222 223333333
Q ss_pred CceEEEEcccCCChh
Q 000129 1501 KIRIVALSTSLANAK 1515 (2114)
Q Consensus 1501 ~~riV~lSATl~n~~ 1515 (2114)
....+|||||+++.+
T Consensus 252 ~~~rlGlTaT~~~~~ 266 (282)
T d1rifa_ 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEEeecCCCC
Confidence 334589999997643
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.54 E-value=3.2e-15 Score=157.19 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=93.1
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeC
Q 000129 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2114)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2114)
+++.+.+++++||||||||.+++.+++...... +.++++++|+++|+.|.++.+... +..+....+
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~----------~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~ 68 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAF 68 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCC
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc----------CceeeeeecchhHHHHHHHHhhhh----hhhhccccc
Confidence 466788999999999999999987877776553 247999999999999998776432 333332222
Q ss_pred CCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEE
Q 000129 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2114)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~l 666 (2114)
.. .......+.++|...+ .+.......+.++++||+||||++..... ....++... ....+.++|+|
T Consensus 69 ~~----~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~lvIiDEaH~~~~~~~-~~~~~~~~~-----~~~~~~~~l~l 135 (140)
T d1yksa1 69 SA----HGSGREVIDAMCHATL---TYRMLEPTRVVNWEVIIMDEAHFLDPASI-AARGWAAHR-----ARANESATILM 135 (140)
T ss_dssp CC----CCCSSCCEEEEEHHHH---HHHHTSSSCCCCCSEEEETTTTCCSHHHH-HHHHHHHHH-----HHTTSCEEEEE
T ss_pred cc----ccccccchhhhhHHHH---HHHHhccccccceeEEEEccccccChhhH-HHHHHHHHH-----hhCCCCCEEEE
Confidence 21 1223456777777643 33344456788999999999998743221 122222221 12468899999
Q ss_pred ccccC
Q 000129 667 SATLP 671 (2114)
Q Consensus 667 SATlp 671 (2114)
|||.|
T Consensus 136 TATPp 140 (140)
T d1yksa1 136 TATPP 140 (140)
T ss_dssp CSSCT
T ss_pred EcCCC
Confidence 99976
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=5.2e-14 Score=158.56 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHc---CC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALS---SA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
.+|+-|.+++..+.. .+ .+.|+||.||||||.+|+.++...+..+ .++++++|+..|+.|.+++
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g-----------~qv~~l~Pt~~La~Q~~~~ 123 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-----------KQVAVLVPTTLLAQQHYDN 123 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-----------CEEEEECSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC-----------CceEEEccHHHhHHHHHHH
Confidence 789999999987753 22 3789999999999999999999998654 3899999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchh
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (2114)
|+++|..+|++|..++|..+...+. .+..+|+|+|-- +... ...+++++||||||-|..+ ..
T Consensus 124 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths----~l~~---~~~f~~LgLiIiDEeH~fg----~k 192 (233)
T d2eyqa3 124 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK----LLQS---DVKFKDLGLLIVDEEHRFG----VR 192 (233)
T ss_dssp HHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH----HHHS---CCCCSSEEEEEEESGGGSC----HH
T ss_pred HHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehh----hhcc---CCccccccceeeechhhhh----hH
Confidence 9999999999999999987754432 246799999965 2222 2456789999999999753 22
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHH
Q 000129 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL 680 (2114)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l 680 (2114)
-+..+ .....++.++.+||| |-++.++.-.
T Consensus 193 Q~~~l-------~~~~~~~~~l~~SAT-Piprtl~~~~ 222 (233)
T d2eyqa3 193 HKERI-------KAMRANVDILTLTAT-PIPRTLNMAM 222 (233)
T ss_dssp HHHHH-------HHHHTTSEEEEEESS-CCCHHHHHHH
T ss_pred HHHHH-------HhhCCCCCEEEEecc-hhHHHHHHHH
Confidence 22211 123457889999999 6666665544
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=8.8e-14 Score=156.64 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=115.2
Q ss_pred CCCCHHHHHHHHHHHc-----CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000129 1340 KHFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~-----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f 1414 (2114)
..+|+-|.+++..+.+ ...+.+++|.||||||.+|+.++...+.. +. ++++++|+..|+.|.+++++++|
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---g~--qv~~l~Pt~~La~Q~~~~~~~~~ 128 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLAQQHYDNFRDRF 128 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHHHHHHHHHHHHS
T ss_pred cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc---CC--ceEEEccHHHhHHHHHHHHHHHH
Confidence 4799999999988753 33478999999999999999999988866 55 99999999999999999999888
Q ss_pred cCCCCcEEEEEcCCcccch-----hhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHH
Q 000129 1415 GQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2114)
Q Consensus 1415 ~~~~g~~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i 1487 (2114)
+.. +.+|..++|..+... ..+. ..+|+|+|-.- +. ....++++++|||||-|..+-..
T Consensus 129 ~~~-~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~----l~---~~~~f~~LgLiIiDEeH~fg~kQ------- 193 (233)
T d2eyqa3 129 ANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL----LQ---SDVKFKDLGLLIVDEEHRFGVRH------- 193 (233)
T ss_dssp TTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH----HH---SCCCCSSEEEEEEESGGGSCHHH-------
T ss_pred hhC-CCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhh----hc---cCCccccccceeeechhhhhhHH-------
Confidence 764 889999999877542 2233 34999999432 21 24467899999999999765211
Q ss_pred HHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1488 ~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
-..++.. ..++.++.+|||+..
T Consensus 194 ~~~l~~~----~~~~~~l~~SATPip 215 (233)
T d2eyqa3 194 KERIKAM----RANVDILTLTATPIP 215 (233)
T ss_dssp HHHHHHH----HTTSEEEEEESSCCC
T ss_pred HHHHHhh----CCCCCEEEEecchhH
Confidence 1112222 357899999999743
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=3.1e-14 Score=163.42 Aligned_cols=157 Identities=24% Similarity=0.319 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHc---CC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSALS---SA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (2114)
+||+-|.+|+..+.. ++ .+.|++|.||||||.+|+.+++..+..+ .++++++||..||.|.+++
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g-----------~q~~~m~Pt~~La~Qh~~~ 151 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQHYRR 151 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcc-----------cceeEEeehHhhhHHHHHH
Confidence 799999999998854 22 3679999999999999999999998765 3799999999999999999
Q ss_pred HHHhhccCCcEEEEEeCCCccChhh-------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccccc-CCch
Q 000129 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641 (2114)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~ 641 (2114)
|+++|..+|+++..++|+.+...+. .++.+|||+|-- .+.. . ..++++++|||||-|..+- .|..
T Consensus 152 ~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs---l~~~-~---~~f~~LglviiDEqH~fgv~Qr~~ 224 (264)
T d1gm5a3 152 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA---LIQE-D---VHFKNLGLVIIDEQHRFGVKQREA 224 (264)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT---HHHH-C---CCCSCCCEEEEESCCCC-----CC
T ss_pred HHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehH---HhcC-C---CCccccceeeeccccccchhhHHH
Confidence 9999999999999999988765432 257899999975 2322 2 3457899999999998754 2211
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000129 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2114)
Q Consensus 642 ~le~iv~rl~~~~~~~~~~~riv~lSATlpn~~dva~~l~~ 682 (2114)
+.....++.++.|||| |-.+.++.-+..
T Consensus 225 ------------l~~~~~~~~~l~~SAT-Piprtl~~~~~g 252 (264)
T d1gm5a3 225 ------------LMNKGKMVDTLVMSAT-PIPRSMALAFYG 252 (264)
T ss_dssp ------------CCSSSSCCCEEEEESS-CCCHHHHHHHTC
T ss_pred ------------HHHhCcCCCEEEEECC-CCHHHHHHHHcC
Confidence 1123456889999999 666666655543
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=6.1e-14 Score=160.93 Aligned_cols=149 Identities=23% Similarity=0.295 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHc-----CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~-----~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+|+-|.+|+..+.+ ...+.+++|.||||||.+|..+++..+.. +. ++++++||..||.|.++.+++.|.
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---g~--q~~~m~Pt~~La~Qh~~~~~~~f~ 157 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQHYRRTVESFS 157 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---cc--ceeEEeehHhhhHHHHHHHHHhhh
Confidence 699999999999863 23478999999999999999999988877 44 899999999999999999999887
Q ss_pred CCCCcEEEEEcCCcccc-----hhhcc--CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHH
Q 000129 1416 QGLGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2114)
Q Consensus 1416 ~~~g~~v~~l~G~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~ 1488 (2114)
.. |+++..++|..+.. +..+. +.+|||||-.- +.. ...++++++|||||-|..+-..
T Consensus 158 ~~-~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl----~~~---~~~f~~LglviiDEqH~fgv~Q-------- 221 (264)
T d1gm5a3 158 KF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL----IQE---DVHFKNLGLVIIDEQHRFGVKQ-------- 221 (264)
T ss_dssp CS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH----HHH---CCCCSCCCEEEEESCCCC------------
T ss_pred hc-cccceeeccccchHHHHHHHHHHHCCCCCEEEeehHH----hcC---CCCccccceeeeccccccchhh--------
Confidence 65 88999999987754 22333 34999999542 222 3457899999999999886421
Q ss_pred HHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1489 SRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
|. ........+.++.+|||+..
T Consensus 222 -r~--~l~~~~~~~~~l~~SATPip 243 (264)
T d1gm5a3 222 -RE--ALMNKGKMVDTLVMSATPIP 243 (264)
T ss_dssp --C--CCCSSSSCCCEEEEESSCCC
T ss_pred -HH--HHHHhCcCCCEEEEECCCCH
Confidence 11 01122456889999999743
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.50 E-value=1.7e-14 Score=151.48 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=92.5
Q ss_pred HHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccc
Q 000129 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (2114)
Q Consensus 1353 il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~ 1432 (2114)
+++.+++++|+||||||||.++..+++..... .+. ++++++|+++++.|.++.+.. .+..+....+..
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--~~~--~vli~~p~~~l~~q~~~~~~~-----~~~~~~~~~~~~--- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRL--RTLVLAPTRVVLSEMKEAFHG-----LDVKFHTQAFSA--- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTTT-----SCEEEESSCCCC---
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--cCc--eeeeeecchhHHHHHHHHhhh-----hhhhhccccccc---
Confidence 46778899999999999999998787777665 233 899999999999998876541 122332222211
Q ss_pred hhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
.......+.++|...+.. .+.....+.++++||+||||++...+ .....+ +..+. . ..+.++|+||||+|
T Consensus 71 -~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~---~~~~~-~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTY---RMLEPTRVVNWEVIIMDEAHFLDPAS-IAARGW---AAHRA-R-ANESATILMTATPP 140 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHH---HHTSSSCCCCCSEEEETTTTCCSHHH-HHHHHH---HHHHH-H-TTSCEEEEECSSCT
T ss_pred -ccccccchhhhhHHHHHH---HHhccccccceeEEEEccccccChhh-HHHHHH---HHHHh-h-CCCCCEEEEEcCCC
Confidence 112345677788776543 33345678899999999999874322 111112 22221 1 35799999999986
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.47 E-value=3.1e-14 Score=148.08 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=83.3
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..++++||||+|++.|+.++..|.. .+..+..+|++|+..+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~-----------------------------------~G~~~~~~H~~~~~~~---- 73 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVA-----------------------------------LGINAVAYYRGLDVSV---- 73 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHH-----------------------------------HTCEEEEECTTCCSCC----
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhc-----------------------------------cccchhhhhccchhhh----
Confidence 4578999999999999999977732 3456889999999765
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
|++|+.+|||||+++++|+| |++..||- |+ ..++.|.++.+|+||+||||| +.+|. ++++.+.
T Consensus 74 ---~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~----~~--~~~~~P~~~~~y~qr~GR~gR---g~~G~-~~~i~~~ 136 (138)
T d1jr6a_ 74 ---IPTNGDVVVVATDALMTGFT-GDFDSVID----CN--TSDGKPQDAVSRTQRRGRTGR---GKPGI-YRFVAPG 136 (138)
T ss_dssp ---CTTSSCEEEEESSSSCSSSC-CCBSEEEE----CS--EETTEECCHHHHHHHHTTBCS---SSCEE-EEECCSS
T ss_pred ---hhhhhcceeehhHHHHhccc-cccceEEE----EE--ecCCCCCCHHHHHhHhccccC---CCCcE-EEEEcCC
Confidence 57899999999999999999 99988880 00 024468899999999999999 57886 5555543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=8.3e-14 Score=156.77 Aligned_cols=136 Identities=28% Similarity=0.287 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|+++|.+++..++.+ .+.++++|||+|||++++..+ ..+ +.++||++|+++|+.|+.+.+..+.
T Consensus 70 ~Lr~yQ~eav~~~~~~-~~~ll~~~tG~GKT~~a~~~~-~~~-------------~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 70 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAI-NEL-------------STPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHH-HHS-------------CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CcCHHHHHHHHHHHhC-CCcEEEeCCCCCceehHHhHH-HHh-------------cCceeEEEcccchHHHHHHHHHhhc
Confidence 7999999999988765 458899999999999876544 222 1268999999999999999997754
Q ss_pred ccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHH
Q 000129 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~ 654 (2114)
. ..++...|+.. ...+|+|+|.+.+....+. ..+.+++||+||||++.. ..+..++.
T Consensus 135 ~---~~~~~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a---~~~~~i~~------ 191 (206)
T d2fz4a1 135 E---EYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPA---ESYVQIAQ------ 191 (206)
T ss_dssp G---GGEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCT---TTHHHHHH------
T ss_pred c---cchhhcccccc------cccccccceehhhhhhhHh-----hCCcCCEEEEECCeeCCc---HHHHHHHh------
Confidence 3 23556666543 2457999999875433332 234678999999999853 33433322
Q ss_pred hhccccccEEEEcccc
Q 000129 655 ETTKEHIRLVGLSATL 670 (2114)
Q Consensus 655 ~~~~~~~riv~lSATl 670 (2114)
.......+|||||+
T Consensus 192 --~~~~~~~lgLTATl 205 (206)
T d2fz4a1 192 --MSIAPFRLGLTATF 205 (206)
T ss_dssp --TCCCSEEEEEEESC
T ss_pred --ccCCCcEEEEecCC
Confidence 12344578999997
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=1.1e-13 Score=155.85 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|.+++..++++ .+.++++|||+|||+++...+ ..+ .+ ++||++|+++|+.|+.+.++ .|+. .
T Consensus 70 ~Lr~yQ~eav~~~~~~-~~~ll~~~tG~GKT~~a~~~~-~~~-----~~--~~Liv~p~~~L~~q~~~~~~-~~~~---~ 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAI-NEL-----ST--PTLIVVPTLALAEQWKERLG-IFGE---E 136 (206)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHH-HHS-----CS--CEEEEESSHHHHHHHHHHHG-GGCG---G
T ss_pred CcCHHHHHHHHHHHhC-CCcEEEeCCCCCceehHHhHH-HHh-----cC--ceeEEEcccchHHHHHHHHH-hhcc---c
Confidence 6999999999999874 458999999999999875443 322 33 78999999999999998887 4543 3
Q ss_pred EEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCC
Q 000129 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2114)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~ 1500 (2114)
.++...|... ...+|+++|.+.+...... ...++++||+||||++... .+..++ ... .
T Consensus 137 ~~~~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a~---~~~~i~-------~~~-~ 194 (206)
T d2fz4a1 137 YVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIA-------QMS-I 194 (206)
T ss_dssp GEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHH-------HTC-C
T ss_pred chhhcccccc------cccccccceehhhhhhhHh-----hCCcCCEEEEECCeeCCcH---HHHHHH-------hcc-C
Confidence 4566666443 2357999998886544333 2457899999999998633 332222 222 3
Q ss_pred CceEEEEcccC
Q 000129 1501 KIRIVALSTSL 1511 (2114)
Q Consensus 1501 ~~riV~lSATl 1511 (2114)
..+.+|||||+
T Consensus 195 ~~~~lgLTATl 205 (206)
T d2fz4a1 195 APFRLGLTATF 205 (206)
T ss_dssp CSEEEEEEESC
T ss_pred CCcEEEEecCC
Confidence 45678999997
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.43 E-value=1e-13 Score=164.50 Aligned_cols=119 Identities=21% Similarity=0.405 Sum_probs=91.6
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHH
Q 000129 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2114)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R 809 (2114)
...+.++||||+++..+..++..|...+.....+ ........|++|+..+|
T Consensus 158 ~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~-----------------------------~g~~~~~~~~~~~~~~~ 208 (286)
T d1wp9a2 158 RKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF-----------------------------VGQASKENDRGLSQREQ 208 (286)
T ss_dssp HCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE-----------------------------CCSSCC-------CCHH
T ss_pred hCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEe-----------------------------eccccccccchhchHHH
Confidence 3447799999999999999999998766544322 11122344889999999
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
..+++.|++|.++|||||+++++|+|+|++++||+ ||++. ++..|+||+||+||.+ .|.++++++..
T Consensus 209 ~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~----~d~~~------~~~~~~Qr~GR~gR~~---~~~~~~l~~~~ 275 (286)
T d1wp9a2 209 KLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM---PGRVIILMAKG 275 (286)
T ss_dssp HHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC---CSEEEEEEETT
T ss_pred HHHHHHHHcCCCcEEEEccceeccccCCCCCEEEE----eCCCC------CHHHHHHHHHhCCCCC---CCEEEEEEeCC
Confidence 99999999999999999999999999999999999 66553 6678999999999964 57788877765
Q ss_pred c
Q 000129 890 E 890 (2114)
Q Consensus 890 e 890 (2114)
.
T Consensus 276 ~ 276 (286)
T d1wp9a2 276 T 276 (286)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.43 E-value=6.4e-14 Score=132.58 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=73.1
Q ss_pred ccchhhH--hhHHHHHHHHhhccccChHHHHHHHHhhHHHHhhccCCcccCCCcccccccchhhhhhHHHHHHHHHHHhH
Q 000129 904 IESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981 (2114)
Q Consensus 904 ies~l~~--~l~d~l~~ei~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~al~~L~~ 981 (2114)
|+|+|.. .|++|+|+||++|++.+.+++++|+++||+|.|+..|| .++|+++++.|.+
T Consensus 2 i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l--------------------~~~i~~~l~~L~~ 61 (85)
T d2p6ra1 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL--------------------SYELERVVRQLEN 61 (85)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC--------------------HHHHHHHHHHHHH
T ss_pred ceeCCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhhcH--------------------HHHHHHHHHHHHH
Confidence 6788753 89999999999999999999999999999999986553 2578999999999
Q ss_pred CCCcccccCCCccccChhHHHHhhccc
Q 000129 982 NNLVKYDRKSGYFQVTDLGRIASYYYI 1008 (2114)
Q Consensus 982 ~~~i~~~~~~~~~~~T~lG~i~s~~yi 1008 (2114)
+|||+.+ +.+.+|++|++||+|||
T Consensus 62 ~~~I~~~---~~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 62 WGMVVEA---AHLAPTKLGSLVSRLYI 85 (85)
T ss_dssp TTSEEES---SSEEECHHHHHHHHTTC
T ss_pred CCCcccc---cccccCHHHHHHHHHhC
Confidence 9999865 56999999999999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.43 E-value=8.5e-14 Score=145.91 Aligned_cols=131 Identities=18% Similarity=0.046 Sum_probs=88.6
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchh
Q 000129 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2114)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~ 1434 (2114)
++.+..+|.||||||||+++...+. . .+. +++|++|+++|+.|+++.+.+.+... .+...++...
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~----~--~~~--~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~--- 70 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA----A--QGY--KVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVRTI--- 70 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----T--TTC--CEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCEE---
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHH----H--cCC--cEEEEcChHHHHHHHHHHHHHHhhcc----cccccccccc---
Confidence 3466789999999999987654433 2 234 89999999999999999998776543 2333333222
Q ss_pred hccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccC
Q 000129 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2114)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl 1511 (2114)
.....++++|.+..... ....+.++++||+||+|++....+. .+..+...... ..+.+++++|||+
T Consensus 71 -~~~~~~~~~~~~~~~~~-----~~~~~~~~~~vIiDE~H~~~~~~~~----~~~~~l~~~~~-~~~~~~l~~TATP 136 (136)
T d1a1va1 71 -TTGSPITYSTYGKFLAD-----GGCSGGAYDIIICDECHSTDATSIL----GIGTVLDQAET-AGARLVVLATATP 136 (136)
T ss_dssp -CCCCSEEEEEHHHHHHT-----TGGGGCCCSEEEEETTTCCSHHHHH----HHHHHHHHTTT-TTCSEEEEEESSC
T ss_pred -ccccceEEEeeeeeccc-----cchhhhcCCEEEEecccccCHHHHH----HHHHHHHHHHH-CCCCcEEEEeCCC
Confidence 23457899998875433 2345788999999999987532211 22333333222 4577899999995
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.41 E-value=1.3e-13 Score=144.52 Aligned_cols=130 Identities=22% Similarity=0.161 Sum_probs=87.2
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEeCCC
Q 000129 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~ 588 (2114)
++.+..+|.||||||||.++...++ . .+.+++|++|+++|++|+.+.+.+.+.. ..+...++.
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~----~----------~~~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~ 68 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA----A----------QGYKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVR 68 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----T----------TTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHH----H----------cCCcEEEEcChHHHHHHHHHHHHHHhhc---ccccccccc
Confidence 3456689999999999987654432 1 1237999999999999999999987653 233334432
Q ss_pred ccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEcc
Q 000129 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2114)
Q Consensus 589 ~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSA 668 (2114)
.. .....++++|.+...... ...++++++|||||+|++..... ..+..++...+ ..+..++++|||
T Consensus 69 ~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~vIiDE~H~~~~~~~----~~~~~~l~~~~-~~~~~~~l~~TA 134 (136)
T d1a1va1 69 TI----TTGSPITYSTYGKFLADG-----GCSGGAYDIIICDECHSTDATSI----LGIGTVLDQAE-TAGARLVVLATA 134 (136)
T ss_dssp EE----CCCCSEEEEEHHHHHHTT-----GGGGCCCSEEEEETTTCCSHHHH----HHHHHHHHHTT-TTTCSEEEEEES
T ss_pred cc----ccccceEEEeeeeecccc-----chhhhcCCEEEEecccccCHHHH----HHHHHHHHHHH-HCCCCcEEEEeC
Confidence 22 234678889988643222 24677899999999998643222 22233333333 346778999999
Q ss_pred c
Q 000129 669 T 669 (2114)
Q Consensus 669 T 669 (2114)
|
T Consensus 135 T 135 (136)
T d1a1va1 135 T 135 (136)
T ss_dssp S
T ss_pred C
Confidence 9
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.3e-12 Score=142.63 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=98.7
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHH
Q 000129 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2114)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R 809 (2114)
...++|+-+.||..+....++..+.+... ...|++.||.|+.+++
T Consensus 28 l~rGgQvy~V~p~I~~~e~~~~~l~~~~p-----------------------------------~~~i~~lHGkm~~~ek 72 (211)
T d2eyqa5 28 ILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHGQMREREL 72 (211)
T ss_dssp HTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEEECCSSCCHHHH
T ss_pred HHcCCeEEEEEcCccchhhHHHHHHHhCC-----------------------------------ceEEEEEEeccCHHHH
Confidence 34588999999999999888887766431 1358899999999999
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
+.++..|++|+++|||||++.+.|||+|+.+++|- ++++. +..+++.|..||+||.+ ..|.||+++.+.
T Consensus 73 e~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI----~~a~r-----fGLaQLhQLRGRVGR~~--~~s~c~l~~~~~ 141 (211)
T d2eyqa5 73 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 141 (211)
T ss_dssp HHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred HHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEE----ecchh-----ccccccccccceeeecC--ccceEEEEecCC
Confidence 99999999999999999999999999999998885 77665 58999999999999965 679999998764
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=2.1e-13 Score=150.81 Aligned_cols=139 Identities=15% Similarity=0.256 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHH-HhccceEeec
Q 000129 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLH 1640 (2114)
Q Consensus 1562 ~~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gV~~~H 1640 (2114)
.++..+...+..++++.+.||..+....+...-. ....+.+ .+. .....|+.+|
T Consensus 17 ~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~---------------------~e~~~~l----~~~~~p~~~v~~lH 71 (206)
T d1gm5a4 17 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSA---------------------VEMYEYL----SKEVFPEFKLGLMH 71 (206)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CHH---------------------HHHHHSG----GGSCC---CBCCCC
T ss_pred HHHHHHHHHHHcCCCEEEEEeeecccccccchhh---------------------HHHHHHH----HHhcCCCCeEEEEe
Confidence 3566777787889999999998876543321000 0000000 000 1134689999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCC-CCHhHHHHhHcccCCCCCCCce
Q 000129 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1641 ~~ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
|.|++++|..+++.|++|+++|||||+++++|||+|++++|| .++.| ...+.+.|..||+||. +..|
T Consensus 72 G~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~ii----------i~~a~~fglsqlhQlrGRvGR~--~~~~ 139 (206)
T d1gm5a4 72 GRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----------IENPERFGLAQLHQLRGRVGRG--GQEA 139 (206)
T ss_dssp SSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----------BCSCSSSCTTHHHHHHHTSCCS--STTC
T ss_pred ecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEE----------EEccCCccHHHHHhhhhheeec--cccc
Confidence 999999999999999999999999999999999999999887 55565 4788999999999998 7899
Q ss_pred EEEEEeecCcHHHHHHHH
Q 000129 1720 KCVILCHAPRKEYYKKFL 1737 (2114)
Q Consensus 1720 ~~iil~~~~~~~~~~~~l 1737 (2114)
.|++++.+......+++.
T Consensus 140 ~~~l~~~~~~~~~~~rl~ 157 (206)
T d1gm5a4 140 YCFLVVGDVGEEAMERLR 157 (206)
T ss_dssp EEECCCCSCCHHHHHHHH
T ss_pred eeEeeeccccccchhhhh
Confidence 999999876665555443
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.8e-12 Score=138.86 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCC
Q 000129 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2114)
Q Consensus 1563 ~~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (2114)
.+..+...+..++++.+.||..+....++..+... +....|+++||.
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~---------------------------------~p~~~i~~lHGk 66 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAEL---------------------------------VPEARIAIGHGQ 66 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH---------------------------------CTTSCEEECCSS
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHh---------------------------------CCceEEEEEEec
Confidence 45667777789999999999998887777655432 234579999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEE
Q 000129 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2114)
Q Consensus 1643 ls~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~i 1722 (2114)
|+++++..++..|.+|+++|||||.+++.|||+|+.+++|. .-...+..+++.|..||+||. +..|.|+
T Consensus 67 m~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI---------~~a~rfGLaQLhQLRGRVGR~--~~~s~c~ 135 (211)
T d2eyqa5 67 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII---------ERADHFGLAQLHQLRGRVGRS--HHQAYAW 135 (211)
T ss_dssp CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE---------TTTTSSCHHHHHHHHTTCCBT--TBCEEEE
T ss_pred cCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEE---------ecchhccccccccccceeeec--CccceEE
Confidence 99999999999999999999999999999999999988771 222236789999999999997 7889999
Q ss_pred EEeecC---cHHHHHHHHHh
Q 000129 1723 ILCHAP---RKEYYKKFLRL 1739 (2114)
Q Consensus 1723 il~~~~---~~~~~~~~lRl 1739 (2114)
+++..+ .....+++-.+
T Consensus 136 l~~~~~~~~~~~a~~RL~~l 155 (211)
T d2eyqa5 136 LLTPHPKAMTTDAQKRLEAI 155 (211)
T ss_dssp EEECCGGGSCHHHHHHHHHH
T ss_pred EEecCCcCCCchHHHHHHHH
Confidence 999764 24444444433
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.34 E-value=7.9e-13 Score=156.77 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=91.2
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.++||||+++..|..++..|....... . . ..+......|++++..+|..+
T Consensus 159 ~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~----~-~----------------------~~g~~~~~~~~~~~~~~~~~~ 211 (286)
T d1wp9a2 159 KQNSKIIVFTNYRETAKKIVNELVKDGIKA----K-R----------------------FVGQASKENDRGLSQREQKLI 211 (286)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCE----E-E----------------------ECCSSCC-------CCHHHHH
T ss_pred CCCCcEEEEeCcHHhHHHHHHHHHHcCCce----E-E----------------------eeccccccccchhchHHHHHH
Confidence 457789999999999999998875421100 0 0 011223445778999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
++.|++|+++|||||+++++|+|+|++++|| +++.|.++..|+||+||+||. ..|.+++|+....
T Consensus 212 ~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi----------~~d~~~~~~~~~Qr~GR~gR~---~~~~~~~l~~~~~ 276 (286)
T d1wp9a2 212 LDEFARGEFNVLVATSVGEEGLDVPEVDLVV----------FYEPVPSAIRSIQRRGRTGRH---MPGRVIILMAKGT 276 (286)
T ss_dssp HHHHHHTSCSEEEECGGGGGGGGSTTCCEEE----------ESSCCHHHHHHHHHHTTSCSC---CCSEEEEEEETTS
T ss_pred HHHHHcCCCcEEEEccceeccccCCCCCEEE----------EeCCCCCHHHHHHHHHhCCCC---CCCEEEEEEeCCC
Confidence 9999999999999999999999999999999 899999999999999999995 5788888887764
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=2.6e-13 Score=150.09 Aligned_cols=85 Identities=24% Similarity=0.482 Sum_probs=75.4
Q ss_pred CceEEecCCCCHHHHHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCC
Q 000129 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2114)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2114)
..+++.||.|++++|+.+++.|++|+++|||||+++++|||+|++++||. |+++. .+.+.+.|..||+||.
T Consensus 65 ~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii----~~a~~-----fglsqlhQlrGRvGR~ 135 (206)
T d1gm5a4 65 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRG 135 (206)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCS
T ss_pred CeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEE----EccCC-----ccHHHHHhhhhheeec
Confidence 45788999999999999999999999999999999999999999998886 77664 3677899999999997
Q ss_pred CCCCceEEEEEcCCCc
Q 000129 875 QYDSYGEGIIITGHSE 890 (2114)
Q Consensus 875 g~d~~G~~iil~~~~e 890 (2114)
| ..|.|++++++..
T Consensus 136 ~--~~~~~~l~~~~~~ 149 (206)
T d1gm5a4 136 G--QEAYCFLVVGDVG 149 (206)
T ss_dssp S--TTCEEECCCCSCC
T ss_pred c--ccceeEeeecccc
Confidence 6 7899999987644
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.26 E-value=1.4e-11 Score=133.98 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=134.0
Q ss_pred CHhHHHHHHhhcCC-CCChhhHHHHHhcCccccCCCCCcchHHHHHHHHhhCCcccC-CCCCCC------hHHHHHHHHH
Q 000129 1800 SYTTIERFSSSLTP-KTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE-NPKFTD------PHVKANALLQ 1871 (2114)
Q Consensus 1800 ~~~T~~~f~~sl~~-~~~~~~iL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~-~~~~~~------~~~K~~lLLq 1871 (2114)
+|.|+..|.+.+.. ..+..++|+++|.+++|..+.+|..|......+......... .+.+.. ..+|+.++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCcchHHHHHHcCCCCccccCcchhHHHHHHHHHHHHhhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 57889999887765 345789999999999999999999987666655443221111 111221 3589999999
Q ss_pred HHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000129 1872 AHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDL 1945 (2114)
Q Consensus 1872 ahlsr~~lp~------~l~~D~~~il~~a~rLl~a~vdi~~~~g~l~~al~~m~L~q~i~Qg~w~~~s~L~QLP~i~~~~ 1945 (2114)
+|++..++.. --++|++.+.++|.|+++++..+|...||.. + -+|.++|.+|+.++..+|++|||+|+.+
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~--l--~~L~~Rl~~Gv~~ell~L~~i~gvgr~r 156 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS--V--SGLTERIKHGVKEELLELVRIRHIGRVR 156 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS--S--TTHHHHHHHTCCGGGHHHHTSTTCCHHH
T ss_pred HHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH--H--HHHHHHHHccCCHHHHhHhcCCCCCHHH
Confidence 9999987642 2378999999999999999999999988743 2 2789999999999999999999999999
Q ss_pred HHHHHcCCCCcccCHHHHhcCCHHHHHH
Q 000129 1946 AKRCQENPGKSIETVFDLVEMEDDERRE 1973 (2114)
Q Consensus 1946 ~~~l~~~~~~~i~t~~dl~~~~~~~r~~ 1973 (2114)
+++|++.| |+|+.||.++.+..+..
T Consensus 157 Ar~L~~~G---i~t~~dl~~a~~~~~~~ 181 (198)
T d2p6ra2 157 ARKLYNAG---IRNAEDIVRHREKVASL 181 (198)
T ss_dssp HHHHHTTT---CCSHHHHHHTHHHHHHH
T ss_pred HHHHHHcC---CCCHHHHHHccHhhHHH
Confidence 99999999 99999999986544433
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=1.5e-13 Score=159.30 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=86.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
+.++||||+|++.|+.++..|... +||+|++.+|..+
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~-------------------------------------------~hg~~~~~~R~~~ 61 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNK-------------------------------------------FRIGIVTATKKGD 61 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-------------------------------------------SCEEECTTSSSHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHh-------------------------------------------ccCCCCHHHHHHH
Confidence 467999999999999988766421 3999999999999
Q ss_pred HHHHhCCCceEEEec----hHhhhhcCCCc-eEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcC
Q 000129 813 EDLFGDGHVQVLVST----ATLAWGVNLPA-HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT----~tla~GVdlP~-v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2114)
++.|++|+++||||| +++++|+|+|. +++||+ ||+|. |.||+||+||.| ..|.+++++.
T Consensus 62 ~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~----~d~P~----------~~~r~gR~~R~g--~~~~~~~~~~ 125 (248)
T d1gkub2 62 YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VGCPS----------FRVTIEDIDSLS--PQMVKLLAYL 125 (248)
T ss_dssp HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE----ESCCE----------EEEECSCGGGSC--HHHHHHHHTT
T ss_pred HHHHHhCCCeEEEEeccccchhhhccCccccccEEEE----eCCCc----------chhhhhhhhccC--cceEeeeecc
Confidence 999999999999999 78999999996 999999 77774 889999999987 6687777777
Q ss_pred CCcHHHHHHh
Q 000129 888 HSELRYYLSL 897 (2114)
Q Consensus 888 ~~e~~~~~~l 897 (2114)
..+......+
T Consensus 126 ~~~~~~~~~l 135 (248)
T d1gkub2 126 YRNVDEIERL 135 (248)
T ss_dssp TSCHHHHHTT
T ss_pred HhhHHHHHHH
Confidence 6665555443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.24 E-value=1.1e-12 Score=149.00 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=85.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHH---
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR--- 809 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R--- 809 (2114)
++++||||+||+.|+.++..|...+.. +..+|++|+.+.|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~-------------------------------------a~~~Hgglsq~~R~~~ 78 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGIN-------------------------------------AVAYYRGLDVSVIPTS 78 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------EEEECTTSCGGGSCSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCC-------------------------------------EEEEeCCchHHHHHhc
Confidence 789999999999999999999876533 4567999999887
Q ss_pred -------HHHHHHHhCCCceEEEechHhhh---hcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000129 810 -------QLVEDLFGDGHVQVLVSTATLAW---GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2114)
Q Consensus 810 -------~~v~~~F~~g~i~VLVaT~tla~---GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2114)
..+++.|+.|..+++|+|+++++ |+|++.+.+||+ |+.+. |+.+|+||+||+|| | +.
T Consensus 79 gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~----~d~P~------SvesyIQRiGRTGR-G--r~ 145 (299)
T d1a1va2 79 GDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET----TTLPQ------DAVSRTQRRGRTGR-G--KP 145 (299)
T ss_dssp SSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEE----EEEEC------BHHHHHHHHTTBCS-S--SC
T ss_pred cchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEEe----CCCCC------CHHHHHhhccccCC-C--CC
Confidence 45778899999999999999999 788888999998 55444 78899999999999 6 56
Q ss_pred eEEEEEcC
Q 000129 880 GEGIIITG 887 (2114)
Q Consensus 880 G~~iil~~ 887 (2114)
|....+..
T Consensus 146 G~~~~l~~ 153 (299)
T d1a1va2 146 GIYRFVAP 153 (299)
T ss_dssp EEEEESCS
T ss_pred ceEEEEec
Confidence 76665543
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=5.2e-12 Score=141.23 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=89.5
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.++||||++...+..++..| ++..+||+++..+|..+
T Consensus 91 ~~~~k~lvf~~~~~~~~~l~~~l----------------------------------------~~~~i~g~~~~~~R~~~ 130 (200)
T d2fwra1 91 HRKDKIIIFTRHNELVYRISKVF----------------------------------------LIPAITHRTSREEREEI 130 (200)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHT----------------------------------------TCCBCCSSSCSHHHHTH
T ss_pred CCCCcEEEEeCcHHHHHHHHhhc----------------------------------------CcceeeCCCCHHHHHHH
Confidence 35678999999998886665322 35678999999999999
Q ss_pred HHHHhcCCceEEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCC-ceEEEEEeec
Q 000129 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN-SGKCVILCHA 1727 (2114)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~-~G~~iil~~~ 1727 (2114)
++.|++|+++|||||+++++|+|+|.+.+|| .++.+.+..+|+||+||++|.|.+. .+.++-|+..
T Consensus 131 l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi----------~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 131 LEGFRTGRFRAIVSSQVLDEGIDVPDANVGV----------IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp HHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE----------EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred HHHhhcCCeeeeeecchhhcccCCCCCCEEE----------EeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999999998 6778899999999999999987543 3566556543
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.21 E-value=3.1e-12 Score=145.38 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHH----
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ---- 1648 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR---- 1648 (2114)
.++++||||+||+.|+.++..|.. .+..+..+|++|+.+.|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~-----------------------------------~Gi~a~~~Hgglsq~~R~~~g 79 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVA-----------------------------------LGINAVAYYRGLDVSVIPTSG 79 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCGGGSCSSS
T ss_pred cCCCEEEECCcHHHHHHHHHHHHH-----------------------------------CCCCEEEEeCCchHHHHHhcc
Confidence 367899999999999999977733 24457889999999887
Q ss_pred ------HHHHHHHhcCCceEEEecCcccc---ccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCce
Q 000129 1649 ------EVVSALFEAGKIKVCVMSSSMCW---GVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2114)
Q Consensus 1649 ------~~v~~~F~~g~i~VLVaT~~la~---Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G 1719 (2114)
..+++.|.+|+.+++|+|+++++ |+|++.+.+|| +++.|.|+.+|+||+||+|| +..|
T Consensus 80 d~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI----------~~d~P~SvesyIQRiGRTGR---Gr~G 146 (299)
T d1a1va2 80 DVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIE----------TTTLPQDAVSRTQRRGRTGR---GKPG 146 (299)
T ss_dssp SEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEE----------EEEEECBHHHHHHHHTTBCS---SSCE
T ss_pred chHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEE----------eCCCCCCHHHHHhhccccCC---CCCc
Confidence 46788899999999999999999 67888888999 88899999999999999999 4788
Q ss_pred EEEEEee
Q 000129 1720 KCVILCH 1726 (2114)
Q Consensus 1720 ~~iil~~ 1726 (2114)
....+..
T Consensus 147 ~~~~l~~ 153 (299)
T d1a1va2 147 IYRFVAP 153 (299)
T ss_dssp EEEESCS
T ss_pred eEEEEec
Confidence 7665443
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.21 E-value=2.3e-12 Score=144.15 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=86.1
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
+...+.++||||++...+..+++.| ++..+||+++..+
T Consensus 89 ~~~~~~k~lvf~~~~~~~~~l~~~l------------------------------------------~~~~i~g~~~~~~ 126 (200)
T d2fwra1 89 ERHRKDKIIIFTRHNELVYRISKVF------------------------------------------LIPAITHRTSREE 126 (200)
T ss_dssp HHTSSSCBCCBCSCHHHHHHHHHHT------------------------------------------TCCBCCSSSCSHH
T ss_pred HhCCCCcEEEEeCcHHHHHHHHhhc------------------------------------------CcceeeCCCCHHH
Confidence 3345679999999998887776543 1234599999999
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCc-eEEEEEcC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITG 887 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~-G~~iil~~ 887 (2114)
|..+++.|++|+++|||||++++.|+|+|++++||. |+++. |+.+|+||+||++|.|.++. +..+-++.
T Consensus 127 R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~----~~~~~------s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 127 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred HHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEEE----eCCCC------CHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 999999999999999999999999999999999998 55543 66789999999999986543 44443443
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.18 E-value=3e-11 Score=131.46 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=139.0
Q ss_pred ccccHHHHHhhcCC-CCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhcc---CC-CCCCCCCC----ChhHHHHHHHH
Q 000129 1009 SHGTISTYNEHLKP-TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR---VP-IPVKESLE----EPSAKINVLLQ 1079 (2114)
Q Consensus 1009 ~~~t~~~~~~~l~~-~~~~~~~l~i~s~s~ef~~i~~r~~e~~~l~~l~~~---~~-~~~~~~~~----~~~~K~~~llq 1079 (2114)
+|.|+..|...++. ..+...+|+++|.+++|..+.+|..|...+..+... .. .+.....+ ....|+.++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCcchHHHHHHcCCCCccccCcchhHHHHHHHHHHHHhhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 46788888887765 468899999999999999999999887554444332 11 11111112 24679999999
Q ss_pred HHHhcccC----CCCccc-chHHHHHHhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccCCCCccccCCCCCHHH
Q 000129 1080 AYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (2114)
Q Consensus 1080 ~~i~~~~~----~~~~l~-~d~~~i~~~a~rl~~a~~ei~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~l~q~~~~~~~~ 1154 (2114)
.||++.++ +.|++. +|+..+.++|.|+++|+.++|...||.. +-.|.++|.+++.++..||.++||+|+.+
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~ell~L~~i~gvgr~r 156 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEELLELVRIRHIGRVR 156 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGGGHHHHTSTTCCHHH
T ss_pred HHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHccCCHHHHhHhcCCCCCHHH
Confidence 99999987 557887 8999999999999999999999999864 33588999999999999999999999999
Q ss_pred HHHHHhCCC-chhhhccCChHHhhhhhcCchhHHHHHHHH
Q 000129 1155 LMKLEKKDF-AWERYYDLSPQELGELIRFPKMGRTLHKFV 1193 (2114)
Q Consensus 1155 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1193 (2114)
+++|.+.|+ +.+++..... +....+ .+++|+++.+-+
T Consensus 157 Ar~L~~~Gi~t~~dl~~a~~-~~~~~~-~~g~g~ki~~~i 194 (198)
T d2p6ra2 157 ARKLYNAGIRNAEDIVRHRE-KVASLI-GRGIAERVVEGI 194 (198)
T ss_dssp HHHHHTTTCCSHHHHHHTHH-HHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHccH-hhHHHH-hcchHHHHHHHh
Confidence 999999998 5566655433 333333 367887777654
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.06 E-value=1.9e-12 Score=149.95 Aligned_cols=104 Identities=8% Similarity=0.056 Sum_probs=83.4
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHHH
Q 000129 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSA 1653 (2114)
Q Consensus 1574 ~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~~ 1653 (2114)
+.++||||+|++.|+.++..| .. .+||+|++.+|..+++
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l--------------------------------------~~---~~hg~~~~~~R~~~~~ 63 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESL--------------------------------------KN---KFRIGIVTATKKGDYE 63 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTT--------------------------------------TT---SSCEEECTTSSSHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHH--------------------------------------HH---hccCCCCHHHHHHHHH
Confidence 567999999999998887443 11 2799999999999999
Q ss_pred HHhcCCceEEEec----CccccccCCCC-cEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1654 LFEAGKIKVCVMS----SSMCWGVPLTA-HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1654 ~F~~g~i~VLVaT----~~la~Gvdip~-~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
.|++|+++||||| +++++|+|+|. +++|| |++.| .|.||+||+||. +..|.+++++...
T Consensus 64 ~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI----------~~d~P----~~~~r~gR~~R~--g~~~~~~~~~~~~ 127 (248)
T d1gkub2 64 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV----------FVGCP----SFRVTIEDIDSL--SPQMVKLLAYLYR 127 (248)
T ss_dssp HHHHTSCSEEEEECC------CCSCCTTTCCEEE----------EESCC----EEEEECSCGGGS--CHHHHHHHHTTTS
T ss_pred HHHhCCCeEEEEeccccchhhhccCccccccEEE----------EeCCC----cchhhhhhhhcc--CcceEeeeeccHh
Confidence 9999999999999 77999999995 99999 88887 388999999998 5677777766665
Q ss_pred cHHHHH
Q 000129 1729 RKEYYK 1734 (2114)
Q Consensus 1729 ~~~~~~ 1734 (2114)
+.....
T Consensus 128 ~~~~~~ 133 (248)
T d1gkub2 128 NVDEIE 133 (248)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 554433
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.90 E-value=9.5e-10 Score=128.14 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=78.7
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHHH
Q 000129 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2114)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~v 812 (2114)
.++++|||+|..++..+|..|++.+. .|..+||.+...++.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~-------------------------------------~V~~l~~~~~~~e~~-- 76 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGK-------------------------------------SVVVLNRKTFEREYP-- 76 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------------------------------------CEEECCSSSCC------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCC-------------------------------------eEEEEcCcCcHhHHh--
Confidence 67899999999999999999987542 256779999988765
Q ss_pred HHHHhCCCceEEEechHhhhhcCCCceEEEEecce-----eccCCCCc----cccCCHHHHHHhhcccCCCC
Q 000129 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ-----IYNPEKGA----WTELSPLDIMQMLGRAGRPQ 875 (2114)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~-----~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g 875 (2114)
.|++|..+|||||+++++|+|++ +.+||+... .||+.++. ..++|.++..||.|||||.+
T Consensus 77 --~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~ 145 (299)
T d1yksa2 77 --TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 145 (299)
T ss_dssp ------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred --hhhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC
Confidence 57889999999999999999995 888887543 47776542 26789999999999999964
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.78 E-value=6.2e-09 Score=121.17 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHHH
Q 000129 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2114)
Q Consensus 1573 ~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v~ 1652 (2114)
..++++|||+|..++..+|..|.. .+..|..+||.++..++.
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~-----------------------------------~g~~V~~l~~~~~~~e~~--- 76 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRK-----------------------------------AGKSVVVLNRKTFEREYP--- 76 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCEEECCSSSCC-------
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCeEEEEcCcCcHhHHh---
Confidence 478999999999999999977732 244689999999988865
Q ss_pred HHHhcCCceEEEecCccccccCCCCcEEEE-Ee----eeEecCCcC----cCCCCCHhHHHHhHcccCCCCCCCceEEEE
Q 000129 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MG----TQYYDGQEN----AHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2114)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdip~~~vVI-~g----t~~yd~~~~----~~~~~s~~~~lQr~GRAGR~~~~~~G~~ii 1723 (2114)
.|.+|+.+|||||+++++|+|++ +.+|| .| ...|++... ...+.|.++..||.|||||.+ +..+..++
T Consensus 77 -~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~-~~~~~~~~ 153 (299)
T d1yksa2 77 -TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYY 153 (299)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEE
T ss_pred -hhhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC-CCceEEEE
Confidence 46899999999999999999996 77776 33 346776633 245789999999999999963 33344443
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.3e-08 Score=100.26 Aligned_cols=99 Identities=17% Similarity=0.299 Sum_probs=80.4
Q ss_pred eeEEEEEeec----cCceEEEEEEEccCCccCCCCCCcccc------EEEEEEeCCCCeEEEEEeeeeeecccccccEEE
Q 000129 1199 LILAAHVQPI----TRTVLKVELTITPDFLWDDKVHGYVEP------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLN 1268 (2114)
Q Consensus 1199 ~~~~~~~~~~----~~~~l~~~l~i~~~f~~~~~~~~~~~~------~wi~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~ 1268 (2114)
+++++.++.- .+..+.++++++++-.-+..+|++.+| |||+|+|...+.|+..+++++++ ...++++
T Consensus 2 i~~~~~v~d~~~v~~g~~~~l~V~l~R~~~~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~---~~~~~l~ 78 (114)
T d2q0zx2 2 IELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQ---KAKVKLD 78 (114)
T ss_dssp EEEEEEETTGGGCBTTSEEEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSS---EEEEEEE
T ss_pred ceEEEEEcCCcceecCCeEEEEEEEEEcCCcCCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEecccc---ceEEEEE
Confidence 5677776521 267788888888876656679988666 99999999999999999998876 3457888
Q ss_pred EEeccCCCCCCeEEEEEeccccccCccccccccc
Q 000129 1269 FTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (2114)
Q Consensus 1269 f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~is~~ 1302 (2114)
|.+| .++..+|.++++||+|+|++...++.|+
T Consensus 79 f~~p--~~G~~~~~l~~~sDsY~G~D~~~~~~~~ 110 (114)
T d2q0zx2 79 FVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSVD 110 (114)
T ss_dssp EECC--SSEEEEEEEEEEESSCSSCCEEEEEEEE
T ss_pred EeCC--CCCeEEEEEEEEcccccccceEEEEEEE
Confidence 8888 5788899999999999999998887763
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.48 E-value=4.4e-07 Score=107.03 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHH--------cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCC---ceEEEEEcccHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG---VMRAVYIAPLEALAKERYR 1408 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il--------~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~---~~k~l~I~Ptr~La~q~~~ 1408 (2114)
..+.|+|.+++.-++ .....+|++-..|.|||+.+.- ++..+....... ..++|||+|. .|+.|+.+
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia-~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT-LIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHH-HHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH-HHHHHHHhcccccCCCCcEEEEccc-hhhHHHHH
Confidence 378999999998654 2344689999999999987643 333333322111 1268999997 58889998
Q ss_pred HHHHHhcCCCCcEEEEEcCCcccchh-----------hccCCcEEEEChhhHHHHHhhhcccccccceeEEEeccccccc
Q 000129 1409 DWEIKFGQGLGMRVVELTGETAMDLK-----------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2114)
Q Consensus 1409 ~~~~~f~~~~g~~v~~l~G~~~~~~~-----------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~ 1477 (2114)
++.+.+.. ...+..++|+...... .....+++++|.+.+...... ..-.+.++||+||+|.+.
T Consensus 132 Ei~k~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~----l~~~~~~~vI~DEaH~ik 205 (298)
T d1z3ix2 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLK 205 (298)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCC
T ss_pred HHHhhcCC--ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc----ccccceeeeecccccccc
Confidence 88854443 3455566665443211 112347999998875433221 122356899999999997
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1478 ~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
+..+..... +..+ ...+.++||||+-
T Consensus 206 n~~s~~~~a----~~~l-----~~~~rllLTGTPi 231 (298)
T d1z3ix2 206 NSDNQTYLA----LNSM-----NAQRRVLISGTPI 231 (298)
T ss_dssp TTCHHHHHH----HHHH-----CCSEEEEECSSCS
T ss_pred cccchhhhh----hhcc-----ccceeeeecchHH
Confidence 654222221 1112 2346789999984
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.45 E-value=2.9e-07 Score=104.35 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000129 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il---~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~ 1417 (2114)
++.|+|.+++.-++ .....+|++-++|.|||+.+. +++..+....... ++++|+| ..++.|+.+++. ++..
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i-~~~~~~~~~~~~~--~~LIv~p-~~l~~~W~~e~~-~~~~- 85 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKENELT--PSLVICP-LSVLKNWEEELS-KFAP- 85 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHTTCCS--SEEEEEC-STTHHHHHHHHH-HHCT-
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHH-Hhhhhhhhccccc--ccceecc-hhhhhHHHHHHH-hhcc-
Confidence 68999999997543 344568999999999999984 4444444423334 7899998 677788888877 4443
Q ss_pred CCcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhh
Q 000129 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2114)
Q Consensus 1418 ~g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~ 1497 (2114)
...+....+. . ........+|+++|.+.+....+ ..--...+||+||+|.+..........+ ..
T Consensus 86 -~~~~~~~~~~-~-~~~~~~~~~vvi~~~~~~~~~~~-----l~~~~~~~vI~DEah~~k~~~s~~~~~~--------~~ 149 (230)
T d1z63a1 86 -HLRFAVFHED-R-SKIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAV--------KE 149 (230)
T ss_dssp -TSCEEECSSS-T-TSCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHHHH--------HT
T ss_pred -cccceeeccc-c-chhhccCcCEEEeeHHHHHhHHH-----HhcccceEEEEEhhhcccccchhhhhhh--------hh
Confidence 2344333222 1 12223456999999887532211 1112468899999999976543222221 11
Q ss_pred cCCCceEEEEcccCCC
Q 000129 1498 VENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~n 1513 (2114)
+. ....++||||+-+
T Consensus 150 l~-a~~r~~LTgTPi~ 164 (230)
T d1z63a1 150 LK-SKYRIALTGTPIE 164 (230)
T ss_dssp SC-EEEEEEECSSCST
T ss_pred hc-cceEEEEecchHH
Confidence 22 3456899999854
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.44 E-value=4.5e-07 Score=102.65 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
+|.|+|.+++.-++ .....+|++-++|.|||..++..+........ ..++++|+| ..++.++.+++.
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~---------~~~~LIv~p-~~l~~~W~~e~~ 81 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE---------LTPSLVICP-LSVLKNWEEELS 81 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC---------CSSEEEEEC-STTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhccc---------ccccceecc-hhhhhHHHHHHH
Confidence 69999999997543 33445899999999999998655444433321 125888998 677888988888
Q ss_pred HhhccCCcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHH
Q 000129 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2114)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (2114)
+.... ..+....+. .......+.+|+++|.+.+....+ ..--...+||+||+|.+..........+
T Consensus 82 ~~~~~--~~~~~~~~~--~~~~~~~~~~vvi~~~~~~~~~~~-----l~~~~~~~vI~DEah~~k~~~s~~~~~~----- 147 (230)
T d1z63a1 82 KFAPH--LRFAVFHED--RSKIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAV----- 147 (230)
T ss_dssp HHCTT--SCEEECSSS--TTSCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHHHH-----
T ss_pred hhccc--ccceeeccc--cchhhccCcCEEEeeHHHHHhHHH-----HhcccceEEEEEhhhcccccchhhhhhh-----
Confidence 76543 334433322 222234568999999986421111 1112357899999999875433322221
Q ss_pred HHHhhccccccEEEEccccC--ChHHHHHHH
Q 000129 652 RQIETTKEHIRLVGLSATLP--NYEDVALFL 680 (2114)
Q Consensus 652 ~~~~~~~~~~riv~lSATlp--n~~dva~~l 680 (2114)
.... ....++||||.- +..|+...+
T Consensus 148 ---~~l~-a~~r~~LTgTPi~n~~~dl~~ll 174 (230)
T d1z63a1 148 ---KELK-SKYRIALTGTPIENKVDDLWSIM 174 (230)
T ss_dssp ---HTSC-EEEEEEECSSCSTTCHHHHHHHH
T ss_pred ---hhhc-cceEEEEecchHHhHHHHHHHHH
Confidence 1122 234689999942 255544433
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.40 E-value=1.2e-06 Score=103.24 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000129 495 QLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (2114)
.|.|+|.+++.-++ .....+|++=..|.|||+.++-.+...+...... .....++|||+|. +|+.|+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~----~~~~~~~LIV~P~-sl~~qW 129 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccc----cCCCCcEEEEccc-hhhHHH
Confidence 68999999997543 2334589999999999997655444444333211 1122368999997 588999
Q ss_pred HHHHHHhhccCCcEEEEEeCCCccChhh-----------hccceEEEcCHhHHHHHHhccCCCcccccccEEEEeccccc
Q 000129 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-----------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-----------~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (2114)
.+++.+++.. ...+..++|+....... ...++++++|.+.+...... ..--+.++||+||+|.+
T Consensus 130 ~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~----l~~~~~~~vI~DEaH~i 204 (298)
T d1z3ix2 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRL 204 (298)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGC
T ss_pred HHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc----ccccceeeeeccccccc
Confidence 9999987754 34455566654322110 12467999998864322111 12234689999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000129 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2114)
Q Consensus 636 ~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATl 670 (2114)
..........+ .. . ...+.++||||.
T Consensus 205 kn~~s~~~~a~-~~-------l-~~~~rllLTGTP 230 (298)
T d1z3ix2 205 KNSDNQTYLAL-NS-------M-NAQRRVLISGTP 230 (298)
T ss_dssp CTTCHHHHHHH-HH-------H-CCSEEEEECSSC
T ss_pred ccccchhhhhh-hc-------c-ccceeeeecchH
Confidence 75432222211 11 1 234568999993
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.39 E-value=5.6e-07 Score=102.79 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=79.7
Q ss_pred HHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHH
Q 000129 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2114)
Q Consensus 1569 ~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR 1648 (2114)
.....+.++||||..+.....+...+ ....+..+..+||+++..+|
T Consensus 80 ~~~~~g~kviIFs~~~~~~~~l~~~l----------------------------------~~~~~~~~~~i~G~~~~~~R 125 (244)
T d1z5za1 80 EALDEGDKIAIFTQFVDMGKIIRNII----------------------------------EKELNTEVPFLYGELSKKER 125 (244)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHHHHH----------------------------------HHHHCSCCCEECTTSCHHHH
T ss_pred hhcccccceEEEeeceehHHHHHHHH----------------------------------HhhccceEEEEecccchhcc
Confidence 33457889999999998775554333 22234567889999999999
Q ss_pred HHHHHHHhcC-CceEEEe-cCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEee
Q 000129 1649 EVVSALFEAG-KIKVCVM-SSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2114)
Q Consensus 1649 ~~v~~~F~~g-~i~VLVa-T~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~ 1726 (2114)
..+.+.|.++ ..+||++ |...+.|+|++....|| .++.+.++..+.|+.||+.|.|...+..++.++.
T Consensus 126 ~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi----------~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~ 195 (244)
T d1z5za1 126 DDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 195 (244)
T ss_dssp HHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----------ECSCCSCTTTC--------------CCEEEEEEE
T ss_pred chhhhhhhccccchhccccccccccccccchhhhhh----------hcCchhhhHHHhhhcceeeecCCCCceEEEEEee
Confidence 9999999876 4676655 57899999999888888 6788899999999999999998777777777766
Q ss_pred cCc
Q 000129 1727 APR 1729 (2114)
Q Consensus 1727 ~~~ 1729 (2114)
...
T Consensus 196 ~~T 198 (244)
T d1z5za1 196 VGT 198 (244)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.32 E-value=1.4e-06 Score=103.82 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=89.9
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHH
Q 000129 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2114)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~ 810 (2114)
..+.++|||++.+.....+...|...+. .+..+||+++..+|.
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~~g~-------------------------------------~~~~l~G~~~~~~R~ 158 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRY-------------------------------------LYVRLDGTMSIKKRA 158 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTC-------------------------------------CEEEECSSCCHHHHH
T ss_pred hcCCceeEEeehhhhhHHHHHHHhhhhc-------------------------------------cccccccchhHHHHH
Confidence 3467999999999888777777766542 245569999999999
Q ss_pred HHHHHHhCCCce---EEEechHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcC
Q 000129 811 LVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2114)
Q Consensus 811 ~v~~~F~~g~i~---VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2114)
.+.+.|.++... +|++|.+.+.|+|+++.+.||.++..| ++....|++||+-|.|..+.-.++.+..
T Consensus 159 ~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~w----------np~~~~Qa~~R~~R~GQ~~~V~v~rli~ 228 (346)
T d1z3ix1 159 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW----------NPANDEQAMARVWRDGQKKTCYIYRLLS 228 (346)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS----------SHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred HHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCC----------ccchHhHhhhcccccCCCCceEEEEEEe
Confidence 999999876543 678899999999999999999854444 5567999999999999766666666666
Q ss_pred CCc
Q 000129 888 HSE 890 (2114)
Q Consensus 888 ~~e 890 (2114)
...
T Consensus 229 ~~T 231 (346)
T d1z3ix1 229 TGT 231 (346)
T ss_dssp TTS
T ss_pred CCC
Confidence 543
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.31 E-value=9e-07 Score=101.07 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=75.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHHHH
Q 000129 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2114)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R~~ 811 (2114)
.+.++||||+.+.....+...+.... +..+..+||+++..+|..
T Consensus 84 ~g~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~i~G~~~~~~R~~ 127 (244)
T d1z5za1 84 EGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGELSKKERDD 127 (244)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH------------------------------------CSCCCEECTTSCHHHHHH
T ss_pred cccceEEEeeceehHHHHHHHHHhhc------------------------------------cceEEEEecccchhccch
Confidence 47799999999988877666554321 123456799999999999
Q ss_pred HHHHHhCC-CceEEEe-chHhhhhcCCCceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceEEEEEcCCC
Q 000129 812 VEDLFGDG-HVQVLVS-TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2114)
Q Consensus 812 v~~~F~~g-~i~VLVa-T~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2114)
+.+.|.++ ..+||++ |.+.+.|+|+++++.||.++.+|+|.. +.|+.||+-|.|..+.-..+.+...+
T Consensus 128 ~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~----------~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 128 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAV----------EDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTT----------C--------------CCEEEEEEETT
T ss_pred hhhhhhccccchhccccccccccccccchhhhhhhcCchhhhHH----------HhhhcceeeecCCCCceEEEEEeeCC
Confidence 99999765 4666654 578999999999999998777777664 89999999999876666666666554
Q ss_pred c
Q 000129 890 E 890 (2114)
Q Consensus 890 e 890 (2114)
.
T Consensus 198 T 198 (244)
T d1z5za1 198 T 198 (244)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.21 E-value=6.4e-06 Score=98.09 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=92.4
Q ss_pred cCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCCHHHHHHH
Q 000129 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2114)
Q Consensus 1572 ~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls~~dR~~v 1651 (2114)
..+.++|||+..+.....+...|. ..+.....+||+++..+|..+
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~-----------------------------------~~g~~~~~l~G~~~~~~R~~~ 160 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCR-----------------------------------NRRYLYVRLDGTMSIKKRAKI 160 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHH-----------------------------------HHTCCEEEECSSCCHHHHHHH
T ss_pred hcCCceeEEeehhhhhHHHHHHHh-----------------------------------hhhccccccccchhHHHHHHH
Confidence 457799999999877655443331 124457789999999999999
Q ss_pred HHHHhcCCce---EEEecCccccccCCCCcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecC
Q 000129 1652 SALFEAGKIK---VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2114)
Q Consensus 1652 ~~~F~~g~i~---VLVaT~~la~Gvdip~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~ 1728 (2114)
.+.|+++... +|++|.+++.|+|+++...|| .++.+.+++...|++||+-|.|....-.++.++...
T Consensus 161 i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi----------~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 161 VERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLV----------MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp HHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEE----------ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHhhhcccccceeeeecchhhhhccccccceEEE----------EecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 9999987543 788899999999999999999 788999999999999999999877777777777765
Q ss_pred c
Q 000129 1729 R 1729 (2114)
Q Consensus 1729 ~ 1729 (2114)
.
T Consensus 231 T 231 (346)
T d1z3ix1 231 T 231 (346)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.96 E-value=1.5e-05 Score=83.32 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=81.0
Q ss_pred HHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCCC
Q 000129 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2114)
Q Consensus 1565 ~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ls 1644 (2114)
..+......+.|+||++.|...++.++..|... +.....+++...
T Consensus 25 ~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~-----------------------------------gi~h~vLnAk~~ 69 (175)
T d1tf5a4 25 EDVAQRYMTGQPVLVGTVAVETSELISKLLKNK-----------------------------------GIPHQVLNAKNH 69 (175)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT-----------------------------------TCCCEEECSSCH
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc-----------------------------------CCCceeehhhhH
Confidence 344444467899999999999999988776331 112346677655
Q ss_pred HHHHHHHHHHHhcCCceEEEecCccccccCCC--------CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCC
Q 000129 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2114)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdip--------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~ 1716 (2114)
..+-..+-+.-.. -.|.|||+++.||.|+. +-.+|| ....+-+..--.|..|||||. +
T Consensus 70 ~~Ea~II~~Ag~~--g~VtIATNmAGRGtDikl~~~v~~~GGLhVI----------~t~~~~s~Rid~Ql~GR~gRQ--G 135 (175)
T d1tf5a4 70 EREAQIIEEAGQK--GAVTIATNMAGRGTDIKLGEGVKELGGLAVV----------GTERHESRRIDNQLRGRSGRQ--G 135 (175)
T ss_dssp HHHHHHHTTTTST--TCEEEEETTSSTTCCCCCCTTSGGGTSEEEE----------ESSCCSSHHHHHHHHTTSSGG--G
T ss_pred HHHHHHHHhccCC--CceeehhhHHHcCCCccchHHHHhCCCcEEE----------EeccCcchhHHHHHhcchhhh--C
Confidence 4444444433333 36999999999999875 345666 344566777889999999997 6
Q ss_pred CceEEEEEeecCc
Q 000129 1717 NSGKCVILCHAPR 1729 (2114)
Q Consensus 1717 ~~G~~iil~~~~~ 1729 (2114)
.+|.+..+++-.+
T Consensus 136 dpGs~~~~~sleD 148 (175)
T d1tf5a4 136 DPGITQFYLSMED 148 (175)
T ss_dssp CCEEEEEEEETTS
T ss_pred CCcccEEEEEcCH
Confidence 7888887776543
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.95 E-value=1.1e-05 Score=84.51 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHHH
Q 000129 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2114)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~R 809 (2114)
+..+.|+|||+.|.+.++.++..|...+.... ++++.....+-
T Consensus 31 ~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~-------------------------------------vLnAk~~~~Ea 73 (175)
T d1tf5a4 31 YMTGQPVLVGTVAVETSELISKLLKNKGIPHQ-------------------------------------VLNAKNHEREA 73 (175)
T ss_dssp HHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE-------------------------------------EECSSCHHHHH
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCce-------------------------------------eehhhhHHHHH
Confidence 34478999999999999999999987665432 23555433333
Q ss_pred HHHHHHHhCCCceEEEechHhhhhcCCC--------ceEEEEecceeccCCCCccccCCHHHHHHhhcccCCCCCCCceE
Q 000129 810 QLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2114)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP--------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2114)
..+-+.- ..-.|.|||+.++||.|+. +=-+||. | +-++ |..--.|..|||||-| .+|.
T Consensus 74 ~II~~Ag--~~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI~-t--~~~~-------s~Rid~Ql~GR~gRQG--dpGs 139 (175)
T d1tf5a4 74 QIIEEAG--QKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVG-T--ERHE-------SRRIDNQLRGRSGRQG--DPGI 139 (175)
T ss_dssp HHHTTTT--STTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEE-S--SCCS-------SHHHHHHHHTTSSGGG--CCEE
T ss_pred HHHHhcc--CCCceeehhhHHHcCCCccchHHHHhCCCcEEEE-e--ccCc-------chhHHHHHhcchhhhC--CCcc
Confidence 3332222 3347999999999999975 2223442 1 2222 6677899999999977 6788
Q ss_pred EEEEcCCC
Q 000129 882 GIIITGHS 889 (2114)
Q Consensus 882 ~iil~~~~ 889 (2114)
+..+++-+
T Consensus 140 ~~~~~sle 147 (175)
T d1tf5a4 140 TQFYLSME 147 (175)
T ss_dssp EEEEEETT
T ss_pred cEEEEEcC
Confidence 77776543
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.75 E-value=3.9e-05 Score=85.14 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.+.++|.-.--.+..| -|....||=|||+++.+|+.-....++ .+-+|+..--||..=++.+...+
T Consensus 80 RhyDVQLiGgi~L~~G---~iaem~TGEGKTL~a~l~a~l~al~g~-----------~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG---NIAEMKTGEGKTLTSTLPVYLNALTGK-----------GVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp CCCHHHHHHHHHHHTT---SEEECCTTSCHHHHHHHHHHHHHTTSS-----------CEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEehhHHHHHHHHHhh---hheeecCCCcchhHHHHHHHHHHhcCC-----------CceEEecCccccchhhhHHhHHH
Confidence 5678888776654444 488999999999999988776655442 47788888899999999999999
Q ss_pred ccCCcEEEEEeCCCccChh-hhccceEEEcCHhHH--HHHHhccC---CCcccccccEEEEeccccc
Q 000129 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2114)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPek~--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (2114)
..+|++|+..+.+.+...+ ..-.++|+++|...+ |.|..+.. +....+.+.+.||||+|.+
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsi 212 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 212 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred HHcCCCccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhh
Confidence 9999999998877665443 345899999999986 66655432 2234566889999999975
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=0.00066 Score=75.17 Aligned_cols=127 Identities=19% Similarity=0.106 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~ 1420 (2114)
.++++|--.--.+.+| -|....||-|||+++.+|+.-.... ++ .+-+|...--||..=++.+.. +-+.+|+
T Consensus 80 RhyDVQLiGgi~L~~G---~iaem~TGEGKTL~a~l~a~l~al~---g~--~vhvvTvNdyLA~RDae~m~~-iy~~lGl 150 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG---NIAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMGK-IFEFLGL 150 (273)
T ss_dssp CCCHHHHHHHHHHHTT---SEEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred EEehhHHHHHHHHHhh---hheeecCCCcchhHHHHHHHHHHhc---CC--CceEEecCccccchhhhHHhH-HHHHcCC
Confidence 5667776665555443 3889999999999998887655444 33 466778888888776666654 4345799
Q ss_pred EEEEEcCCcccc-hhhccCCcEEEEChhhHH-HHHhh-hcc---cccccceeEEEecccccc
Q 000129 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRR-WKQ---RKYVQQVSLFIIDELHLI 1476 (2114)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~-~~~---~~~l~~v~liIiDEaH~l 1476 (2114)
+|+..+.+.... .+..-.+||+++|...+- ..+|. ... ....+.+.+.||||+|.+
T Consensus 151 svg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsi 212 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 212 (273)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred CccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhh
Confidence 999988876654 333446799999999862 23443 221 223556899999999954
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00065 Score=80.77 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000129 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2114)
Q Consensus 1340 ~~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~ 1413 (2114)
...++.|.+|+..++. +..++|.||.|||||.... .++..+.......+.++++++||-.-|..+.+.....
T Consensus 147 ~~~~~~Q~~A~~~al~-~~~~vI~G~pGTGKTt~i~-~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 147 SDEINWQKVAAAVALT-RRISVISGGPGTGKTTTVA-KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp TTSCCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHH-HHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred cccccHHHHHHHHHHc-CCeEEEEcCCCCCceehHH-HHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHH
Confidence 3567899999999986 5579999999999998752 2333333222223348999999999888877665533
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.93 E-value=0.00043 Score=80.73 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
+|||-|.+|+.. ...+++|.||.|||||.+.+.-+...+..... ..-+++|+++++++|.++..++.+.+
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-------~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCC-------ChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999963 34579999999999999987766666554321 22379999999999999999887765
Q ss_pred c
Q 000129 575 Q 575 (2114)
Q Consensus 575 ~ 575 (2114)
.
T Consensus 71 ~ 71 (306)
T d1uaaa1 71 G 71 (306)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0014 Score=77.65 Aligned_cols=83 Identities=19% Similarity=0.214 Sum_probs=56.9
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000129 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2114)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (2114)
.++...|. -..++..|.+|+..++.+ .-++|+||.|+|||.+..- ++..+..... ..+.++++++||-.-|
T Consensus 138 ~~~~~~~~-~~~~~~~Q~~A~~~al~~-~~~vI~G~pGTGKTt~i~~-~l~~l~~~~~------~~~~~I~l~ApTgkAA 208 (359)
T d1w36d1 138 QTLDKLFP-VSDEINWQKVAAAVALTR-RISVISGGPGTGKTTTVAK-LLAALIQMAD------GERCRIRLAAPTGKAA 208 (359)
T ss_dssp HHHHTTCC-CTTSCCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHH-HHHHHHHTCS------SCCCCEEEEBSSHHHH
T ss_pred HHHHHhcc-CcccccHHHHHHHHHHcC-CeEEEEcCCCCCceehHHH-HHHHHHHHHh------ccCCeEEEecCcHHHH
Confidence 34444443 235678999999999865 5699999999999987533 3333322111 1345899999999988
Q ss_pred HHHHHHHHHhhc
Q 000129 564 AEVVGNLSNRLQ 575 (2114)
Q Consensus 564 ~q~~~~~~~~~~ 575 (2114)
..+.+.......
T Consensus 209 ~~L~e~~~~~~~ 220 (359)
T d1w36d1 209 ARLTESLGKALR 220 (359)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888777655443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.62 E-value=0.001 Score=77.30 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
++||-|.+|+.. ...+++|.||.|||||.+...-+...+.... +.. +++|+++|+++|.++..++.+.++
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~--~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChh--HEEEEeCcHHHHHHHHHHHHHhcC
Confidence 489999999964 3567999999999999887655555544321 223 899999999999999888875443
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.47 E-value=0.0014 Score=56.15 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=51.8
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPN 1994 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~P~ 1994 (2114)
|.+|||||+.++++|.++| +.|+.+|..+++++..++-++++...++|.+.++..-+
T Consensus 1 L~~IpGIG~~~a~~L~~~G---~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~d 57 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAG---YIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCD 57 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHT---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHcc---CCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHcC
Confidence 6789999999999999999 99999999999999999889999999999888776443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.32 E-value=0.0027 Score=74.19 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (2114)
.|++-|.+++.. ...+++|.||.|||||.+++--+.+.+..... .+-+++++++++.++.++..++...+
T Consensus 11 ~L~~eQ~~~v~~---~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~-------~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC---CCCCEEEEecCCccHHHHHHHHHHHHHHcCCC-------CHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 589999999974 34469999999999999987777666654321 22379999999999999999988765
Q ss_pred c
Q 000129 575 Q 575 (2114)
Q Consensus 575 ~ 575 (2114)
.
T Consensus 81 ~ 81 (318)
T d1pjra1 81 G 81 (318)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.013 Score=61.71 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=47.4
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhcccCcchhhhhccCceEEecCCCCHHH
Q 000129 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2114)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~hHagl~~~~ 808 (2114)
-+..+.|+||.+.|....+.++..|...++....+ +|.-...+
T Consensus 30 ~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vL-------------------------------------NAK~herE 72 (219)
T d1nkta4 30 RYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL-------------------------------------NAKYHEQE 72 (219)
T ss_dssp HHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE-------------------------------------CSSCHHHH
T ss_pred HHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhcc-------------------------------------chhhHHHH
Confidence 34558899999999999999999999887665433 33321112
Q ss_pred HHHHHHHHhCCCceEEEechHhhhhcCC
Q 000129 809 RQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2114)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2114)
-..|-+ +-..-.|-|||+.+.||.|+
T Consensus 73 AeIIAq--AG~~GaVTIATNMAGRGTDI 98 (219)
T d1nkta4 73 ATIIAV--AGRRGGVTVATNMAGRGTDI 98 (219)
T ss_dssp HHHHHT--TTSTTCEEEEETTCSTTCCC
T ss_pred HHHHHh--cccCCcEEeeccccCCCCce
Confidence 122222 12234689999999999998
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.13 E-value=0.0043 Score=53.14 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=51.6
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
.|..|||||+.++++|.++| +.|+.+|.++++++..++-++++...+.|.+.+...
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g---~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~ 57 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAG---YDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 57 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhc---CCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999 999999999999999999999999999998887654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.11 E-value=0.0046 Score=72.15 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhcc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~-~~~~~k~l~I~Ptr~La~q~~~~~~~~f~ 1415 (2114)
.+++-|.+++.. ...+++|.|+.|||||.+..--+.+.+.... +.. +++++++++.++.++..++.....
T Consensus 11 ~L~~eQ~~~v~~---~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~--~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 11 HLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPW--NILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp TSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGG--GEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC---CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHH--HeEeEeccHHHHHHHHHHHHhhcc
Confidence 699999999974 3456999999999999988766666555421 222 799999999999999998875543
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.98 E-value=0.0014 Score=60.46 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHCCCceecCCCccccCcccchhhhccc
Q 000129 1760 LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1799 (2114)
Q Consensus 1760 lselve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~i 1799 (2114)
+.+.|+++++.|.++|||+.++ ++.||++|++||+|||
T Consensus 48 l~~~i~~~l~~L~~~~~I~~~~--~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 48 LSYELERVVRQLENWGMVVEAA--HLAPTKLGSLVSRLYI 85 (85)
T ss_dssp CHHHHHHHHHHHHHTTSEEESS--SEEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCccccc--ccccCHHHHHHHHHhC
Confidence 4578999999999999998753 5999999999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.65 E-value=0.017 Score=62.52 Aligned_cols=122 Identities=21% Similarity=0.206 Sum_probs=66.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP--~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
+++++|||+|||....--+.+...++ .++.+++- .|.-+.++.+.+.+.+ |+.+.....
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g-----------~kV~lit~Dt~R~gA~eQL~~~a~~l---~v~~~~~~~----- 73 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKG-----------RRPLLVAADTQRPAAREQLRLLGEKV---GVPVLEVMD----- 73 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTT-----------CCEEEEECCSSCHHHHHHHHHHHHHH---TCCEEECCT-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----------CcEEEEecccccchHHHHHHHHHHhc---CCccccccc-----
Confidence 56799999999977654333333222 24454443 7888889988888865 343433221
Q ss_pred hhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000129 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2114)
Q Consensus 592 ~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSATlp 671 (2114)
|+....+.+........+..++|+||=+-+.+. -+..+..+....+...+.-.++.++||.+
T Consensus 74 -------------~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~-----d~~~~~el~~~~~~~~~~~~llv~~a~~~ 135 (207)
T d1ls1a2 74 -------------GESPESIRRRVEEKARLEARDLILVDTAGRLQI-----DEPLMGELARLKEVLGPDEVLLVLDAMTG 135 (207)
T ss_dssp -------------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC-----CHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred -------------cchhhHHHHHHHHHHhhccCcceeecccccchh-----hhhhHHHHHHHHhhcCCceEEEEeccccc
Confidence 221111111110001234568899988865432 22233333333344455666788899876
Q ss_pred C
Q 000129 672 N 672 (2114)
Q Consensus 672 n 672 (2114)
.
T Consensus 136 ~ 136 (207)
T d1ls1a2 136 Q 136 (207)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.57 E-value=0.047 Score=57.45 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCCEEEEeCChHHHHHHHHHHHHhhccCCcccccccCCCcccchhhHhhhhHHHHHHHhccceEeecCCC
Q 000129 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2114)
Q Consensus 1564 ~~~i~~~l~~~~~~LVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l 1643 (2114)
...+......+.|+||.+.|...++.++..|... +....++++.-
T Consensus 24 v~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~-----------------------------------gi~h~vLNAK~ 68 (219)
T d1nkta4 24 VDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR-----------------------------------RIPHNVLNAKY 68 (219)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT-----------------------------------TCCCEEECSSC
T ss_pred HHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHh-----------------------------------ccchhccchhh
Confidence 3444444478999999999999999888766432 11234556553
Q ss_pred CHHHHHHHHHHHhcCC-ceEEEecCccccccCCC----------------------------------------------
Q 000129 1644 NKTDQEVVSALFEAGK-IKVCVMSSSMCWGVPLT---------------------------------------------- 1676 (2114)
Q Consensus 1644 s~~dR~~v~~~F~~g~-i~VLVaT~~la~Gvdip---------------------------------------------- 1676 (2114)
...+-.+|- ..|. -.|-|||+++.||.||-
T Consensus 69 herEAeIIA---qAG~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
T d1nkta4 69 HEQEATIIA---VAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 145 (219)
T ss_dssp HHHHHHHHH---TTTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHH---hcccCCcEEeeccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3443 36899999999999982
Q ss_pred ------CcEEEEEeeeEecCCcCcCCCCCHhHHHHhHcccCCCCCCCceEEEEEeecCc
Q 000129 1677 ------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2114)
Q Consensus 1677 ------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRAGR~~~~~~G~~iil~~~~~ 1729 (2114)
+=.+|| ||.+.+.+ .-=-|-.|||||. +.+|.+..|.+=.+
T Consensus 146 ~~V~~~GGL~VI-GTErHeSr---------RIDnQLRGRsGRQ--GDPGsSrFflSLeD 192 (219)
T d1nkta4 146 KEVIEAGGLYVL-GTERHESR---------RIDNQLRGRSGRQ--GDPGESRFYLSLGD 192 (219)
T ss_dssp HHHHHTTSEEEE-ECSCCSSH---------HHHHHHHHTSSGG--GCCEEEEEEEETTS
T ss_pred HHHHhcCCcEEE-eccccccc---------ccccccccccccc--CCCccceeEEeccH
Confidence 224555 66655433 2336999999997 68898888887554
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0088 Score=51.40 Aligned_cols=56 Identities=16% Similarity=0.357 Sum_probs=49.8
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc-CCc
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR-FPN 1994 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~-~P~ 1994 (2114)
.|.+|||||...+++|.++ +.|+.+|.+++.++..++++ ++...+.|.+|+++ ||.
T Consensus 4 ~L~~iPGIg~~~~~~Ll~~----f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~f~~~~~~~ 60 (62)
T d2a1ja1 4 FLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 60 (62)
T ss_dssp HHHTSTTCCHHHHHHHHHH----CSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHCCCCC
T ss_pred HHhcCCCCCHHHHHHHHHH----hccHHHHHhCCHHHHHHCcC-cHHHHHHHHHHHhhhhcc
Confidence 4789999999999998764 67999999999999999999 88889999999986 553
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.057 Score=58.36 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=28.7
Q ss_pred cccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
......+++||||+|.|... ....+++.++..+.++.+|+.+-.
T Consensus 104 ~~~~~~kviIide~d~l~~~-------a~n~Llk~lEep~~~~~fIl~t~~ 147 (207)
T d1a5ta2 104 ARLGGAKVVWVTDAALLTDA-------AANALLKTLEEPPAETWFFLATRE 147 (207)
T ss_dssp CTTSSCEEEEESCGGGBCHH-------HHHHHHHHHTSCCTTEEEEEEESC
T ss_pred cccCccceEEechhhhhhhh-------hhHHHHHHHHhhcccceeeeeecC
Confidence 34456789999999998621 223445566666667777765543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.053 Score=58.36 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=62.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-cc-cHHHHHHHHHHHHHhhccCCcEEEEEeCCCccC
Q 000129 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-AP-MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2114)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i-aP-~raLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2114)
+++++|||+|||....--+.+ +.+. +.++.++ +- .|+=|.++.+.+.+.+ |+.+....
T Consensus 12 i~lvGptGvGKTTTiAKLA~~-~~~~----------g~kV~lit~Dt~R~gA~eQL~~~a~~l---~v~~~~~~------ 71 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQ-FEQQ----------GKSVMLAAGDTFRAAAVEQLQVWGQRN---NIPVIAQH------ 71 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-HHTT----------TCCEEEECCCTTCHHHHHHHHHHHHHT---TCCEECCS------
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC----------CCcEEEEecccccccchhhhhhhhhhc---CCcccccc------
Confidence 567999999999876543333 2221 1134333 33 4777888888888764 44443222
Q ss_pred hhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc------cccccEEE
Q 000129 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT------KEHIRLVG 665 (2114)
Q Consensus 592 ~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~------~~~~riv~ 665 (2114)
+|+.+..+.+........+..++|+||=+=+. +.-+..+..+....+.. .+.-.++.
T Consensus 72 ------------~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~-----~~d~~~~~el~~l~~~~~~~~~~~p~~~~LV 134 (211)
T d2qy9a2 72 ------------TGADSASVIFDAIQAAKARNIDVLIADTAGRL-----QNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 134 (211)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHTTCSEEEECCCCCG-----GGHHHHHHHHHHHHHHHTTTCTTCCSEEEEE
T ss_pred ------------cCCCHHHHHHHHHHHHHHcCCCEEEeccCCCc-----cccHHHHHHHHHHHHHHhhhcccCcceeeee
Confidence 22222112211111112345688999987543 33333333333222221 13456788
Q ss_pred EccccC
Q 000129 666 LSATLP 671 (2114)
Q Consensus 666 lSATlp 671 (2114)
++||..
T Consensus 135 l~a~~~ 140 (211)
T d2qy9a2 135 IDASTG 140 (211)
T ss_dssp EEGGGT
T ss_pred hhcccC
Confidence 899975
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.044 Score=59.31 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHH---cCC---CcEEEEecCCCchHHHHHHHHHHHhh
Q 000129 1342 FNPIQTQVFTVLY---NTD---DNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il---~~~---~nvli~ApTGSGKTl~~~l~il~~l~ 1383 (2114)
++|+|..++..+. ..+ ..+++.||.|+|||.++... .+.+.
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~-a~~l~ 49 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL-SRYLL 49 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH-HHHHT
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHH-HHhcc
Confidence 5688888877663 222 24899999999999988443 44443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.87 E-value=0.036 Score=59.74 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=67.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1360 vli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~--Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
++++||||+|||+...-...+ +.. .+. ++.+++ ..|.-|.++.+.|.+.++ +.+...
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~-~~~--~g~--kV~lit~Dt~R~gA~eQL~~~a~~l~----v~~~~~------------ 71 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALY-YKG--KGR--RPLLVAADTQRPAAREQLRLLGEKVG----VPVLEV------------ 71 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHH-HHH--TTC--CEEEEECCSSCHHHHHHHHHHHHHHT----CCEEEC------------
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH--CCC--cEEEEecccccchHHHHHHHHHHhcC----Cccccc------------
Confidence 566999999999776443332 333 233 444443 368888888888886654 333222
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~n 1513 (2114)
.+|+......+........++.++|+||=+-+.. .-+..+..++.+....++...++.++|+.+.
T Consensus 72 ------~~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~-----~d~~~~~el~~~~~~~~~~~~llv~~a~~~~ 136 (207)
T d1ls1a2 72 ------MDGESPESIRRRVEEKARLEARDLILVDTAGRLQ-----IDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 136 (207)
T ss_dssp ------CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS-----CCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred ------cccchhhHHHHHHHHHHhhccCcceeecccccch-----hhhhhHHHHHHHHhhcCCceEEEEeccccch
Confidence 2222222222111111124566788887665432 2233556666665555666677888888764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.077 Score=57.23 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-cccHHHHHHHHHHHHHhh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-APMKALVAEVVGNLSNRL 574 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i-aP~raLa~q~~~~~~~~~ 574 (2114)
.++++||||+|||....--..+...++. + -+++- =..|+=+.++.+.+.+.+
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~~~---------k-V~lit~Dt~R~gA~eQL~~~a~~l 65 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDEGK---------S-VVLAAADTFRAAAIEQLKIWGERV 65 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC---------C-EEEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---------c-eEEEeecccccchhHHHHHHhhhc
Confidence 4678999999999876543333332221 1 23333 346788888888887765
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.01 Score=49.69 Aligned_cols=55 Identities=11% Similarity=-0.058 Sum_probs=49.5
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
|.|-+|||||+.++++|.++ +.|+.++++++.++..++-++++...+.|.+++++
T Consensus 2 S~L~~I~gVG~~~a~~L~~~----F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~N 56 (56)
T d1kfta_ 2 SSLETIEGVGPKRRQMLLKY----MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 56 (56)
T ss_dssp CGGGGCTTCSSSHHHHHHHH----HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHTC
T ss_pred CCcccCCCccHHHHHHHHHH----hCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHcC
Confidence 67889999999999998775 67999999999999999989999999999998763
|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.026 Score=48.47 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=50.2
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.++.+||++..+++|+++| +.|+.+|+.++.++..++-++++...++|.+.++.
T Consensus 5 ~L~~~Gig~~~~~kL~~aG---~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k 58 (64)
T d1szpa1 5 KLQVNGITMADVKKLRESG---LHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58 (64)
T ss_dssp GGCCTTCCHHHHHHHHTTS---CCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHhHCCCCHHHHHHHHHcC---CCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999 99999999999999999889999999999888876
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.04 E-value=0.13 Score=55.29 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=66.2
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P-tr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
.++++||||+|||+...-...+ +.. . +.. -+++-+- .|.=+.++.+.|.+.+ |+.+.. ...
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~-~~~-~-~~k-V~lit~Dt~R~gA~eQL~~~a~~l----~i~~~~--~~~-------- 74 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKM-FVD-E-GKS-VVLAAADTFRAAAIEQLKIWGERV----GATVIS--HSE-------- 74 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHH-T-TCC-EEEEEECTTCHHHHHHHHHHHHHH----TCEEEC--CST--------
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH-C-CCc-eEEEeecccccchhHHHHHHhhhc----Cccccc--cCC--------
Confidence 4678999999999876433333 333 1 232 3444444 5888888888877655 344322 111
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC------CCceEEEEcccC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE------NKIRIVALSTSL 1511 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~------~~~riV~lSATl 1511 (2114)
++-+....+.+......++.++|+||=+=+. +.=+..+..++.+..... +.-.++.++||.
T Consensus 75 --------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~-----~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~ 141 (213)
T d1vmaa2 75 --------GADPAAVAFDAVAHALARNKDVVIIDTAGRL-----HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 141 (213)
T ss_dssp --------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCC-----SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred --------CCcHHHHHHHHHHHHHHcCCCEEEEeccccc-----cchHHHHHHHHHHHhhhhhccccccceeEEeecccc
Confidence 1112222222222223456788888877543 222334444544433322 234678889987
Q ss_pred CC
Q 000129 1512 AN 1513 (2114)
Q Consensus 1512 ~n 1513 (2114)
..
T Consensus 142 ~~ 143 (213)
T d1vmaa2 142 GQ 143 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 43
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.13 Score=55.29 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=66.5
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEccc-HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL-EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Pt-r~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
.++++||||+|||+...=... ++.. .+.. -+++.+-| |.=|.++.+.|.+.+ |+.+...
T Consensus 11 vi~lvGptGvGKTTTiAKLA~-~~~~--~g~k-V~lit~Dt~R~gA~eQL~~~a~~l----~v~~~~~------------ 70 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLAR-QFEQ--QGKS-VMLAAGDTFRAAAVEQLQVWGQRN----NIPVIAQ------------ 70 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-HHHT--TTCC-EEEECCCTTCHHHHHHHHHHHHHT----TCCEECC------------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--CCCc-EEEEecccccccchhhhhhhhhhc----CCccccc------------
Confidence 366799999999987644332 2333 2221 33444444 777888888777554 3443221
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcC------CCceEEEEcccC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE------NKIRIVALSTSL 1511 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~------~~~riV~lSATl 1511 (2114)
-+|+.+...+++.......++.++|+||=+=+. +.-+..+..++.+..... +.-.++.++|+.
T Consensus 71 ------~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~-----~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~ 139 (211)
T d2qy9a2 71 ------HTGADSASVIFDAIQAAKARNIDVLIADTAGRL-----QNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 139 (211)
T ss_dssp ------STTCCHHHHHHHHHHHHHHTTCSEEEECCCCCG-----GGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG
T ss_pred ------ccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCc-----cccHHHHHHHHHHHHHHhhhcccCcceeeeehhccc
Confidence 223333333333222222456788888876432 233335555554433222 345667888887
Q ss_pred CC
Q 000129 1512 AN 1513 (2114)
Q Consensus 1512 ~n 1513 (2114)
..
T Consensus 140 ~~ 141 (211)
T d2qy9a2 140 GQ 141 (211)
T ss_dssp TH
T ss_pred Cc
Confidence 54
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.76 E-value=0.027 Score=47.86 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=44.8
Q ss_pred cccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcC-chhHHHHHHHHhcCC
Q 000129 1144 LRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQFP 1197 (2114)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~P 1197 (2114)
|.++||||+.++++|.++|| +++++...++++|.++-+. ++.+++|++.++..-
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999988 8999999999999998664 456677877766543
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.028 Score=48.16 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=48.1
Q ss_pred ccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcCchhHHHHHHHHhc-CCc
Q 000129 1143 PLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ-FPK 1198 (2114)
Q Consensus 1143 ~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~P~ 1198 (2114)
.|.++||||+..+++|-++==+++.+...+.+||.++.+.++.++.|++++|+ ||.
T Consensus 4 ~L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~~~~~~ 60 (62)
T d2a1ja1 4 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSFAE 60 (62)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHCCCCC
T ss_pred HHhcCCCCCHHHHHHHHHHhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHhhhhcc
Confidence 47899999999999998654478999999999999999866789999999986 443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=0.37 Score=52.83 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=25.9
Q ss_pred ccccccEEEEecccccccCCchhHHHHHHHHHHHHhhccccccEEEEc
Q 000129 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2114)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riv~lS 667 (2114)
.....+++||||+|.|... ....+++.++..+...++|+.+
T Consensus 112 ~~~~~kviiIde~d~l~~~-------~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 112 ARGRFKVYLIDEVHMLSRH-------SFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp SSSSSEEEEEETGGGSCHH-------HHHHHHHHHHSCCTTEEEEEEE
T ss_pred ccCCCEEEEEECcccCCHH-------HHHHHHHHHhcCCCCeEEEEEc
Confidence 3445689999999998521 1233455556655667766654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.65 E-value=0.12 Score=55.61 Aligned_cols=125 Identities=13% Similarity=0.142 Sum_probs=60.1
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcccchhhcc
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P-tr~La~q~~~~~~~~f~~~~g~~v~~l~G~~~~~~~~l~ 1437 (2114)
.++++||||+|||+...=... ++.. .+.. -+++.+- .|.=+.++.+.|.+.++ +.+...
T Consensus 14 vi~lvGptGvGKTTTiAKLA~-~~~~--~g~k-V~lit~Dt~R~ga~eQL~~~a~~l~----v~~~~~------------ 73 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAY-FYKK--KGFK-VGLVGADVYRPAALEQLQQLGQQIG----VPVYGE------------ 73 (211)
T ss_dssp EEEEECSCCC----HHHHHHH-HHHH--TTCC-EEEEECCCSSHHHHHHHHHHHHHHT----CCEECC------------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--CCCc-eEEEEeeccccchhHHHHHhccccC----cceeec------------
Confidence 466789999999977543332 3333 2231 3344443 47777787887776553 333211
Q ss_pred CCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 000129 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2114)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~riV~lSATl~ 1512 (2114)
-+++.+....++........+.++|+||=+=+...+ .....+..+..+.......-.++.++|+..
T Consensus 74 ------~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~---~~~~~~~el~~~~~~~~~~~~~LVl~a~~~ 139 (211)
T d1j8yf2 74 ------PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYG---EEAALLEEMKNIYEAIKPDEVTLVIDASIG 139 (211)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTT---CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred ------ccchhhhHHHHHHHHHhhccCCceEEEecCCcCccc---hhhHHHHHHHHHHhhcCCceEEEEEecccC
Confidence 122222222222111112446778888855432111 111234455555544455556777888874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.54 E-value=0.11 Score=55.90 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=33.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhc
Q 000129 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQ 575 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~ 575 (2114)
..++++||||+|||....--..+ +... +.++.+|+ ..|+=+.++.+.+.+.++
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~-~~~~----------g~kV~lit~Dt~R~gA~eQL~~~a~~l~ 61 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRY-YQNL----------GKKVMFCAGDTFRAAGGTQLSEWGKRLS 61 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-HHTT----------TCCEEEECCCCSSTTHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHHC----------CCcEEEEEeccccccchhhHhhcccccC
Confidence 44678999999999876543332 2221 11344333 357888898888888653
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=0.22 Score=53.13 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000129 500 QSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2114)
Q Consensus 500 Q~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (2114)
|.+.+..+++.+ .++|++||.|+|||..+.... +.+..... ..+-++++.|-..-
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~~-------~h~D~~~i~~~~~~--------------- 58 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFPP-------KASDVLEIDPEGEN--------------- 58 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSCC-------CTTTEEEECCSSSC---------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhcccc-------CCCCEEEEeCCcCC---------------
Confidence 667777777754 389999999999999876443 33332211 11225555553110
Q ss_pred CcEEEEEeCCCccChhhhccceEEEcCHhHHHHHHhccCCCcccccccEEEEecccccccCCchhHHHHHHHHHHHHhhc
Q 000129 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2114)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPek~d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (2114)
.. -+....+.+...........+++||||||.|.. ... ..+++.++..
T Consensus 59 ------------I~-------------Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~---~aq----NaLLK~LEEP 106 (198)
T d2gnoa2 59 ------------IG-------------IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---QAA----NAFLKALEEP 106 (198)
T ss_dssp ------------BC-------------HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---HHH----HHTHHHHHSC
T ss_pred ------------CC-------------HHHHHHHHHHHhhCcccCCCEEEEEeCccccch---hhh----hHHHHHHhCC
Confidence 00 011111222222223445678999999999862 112 2345556776
Q ss_pred cccccEEEEccc
Q 000129 658 KEHIRLVGLSAT 669 (2114)
Q Consensus 658 ~~~~riv~lSAT 669 (2114)
+.+..+++.|..
T Consensus 107 p~~t~fiLit~~ 118 (198)
T d2gnoa2 107 PEYAVIVLNTRR 118 (198)
T ss_dssp CTTEEEEEEESC
T ss_pred CCCceeeeccCC
Confidence 778888877655
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.99 E-value=0.28 Score=52.91 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHcCC----CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000129 1343 NPIQTQVFTVLYNTD----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2114)
Q Consensus 1343 ~~iQ~q~~~~il~~~----~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~ 1418 (2114)
|..-.+++..+.++. ..+++.||+|+|||-.. .++.+.+.. .+. .++| .+...+..+....+...
T Consensus 18 N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl-~A~~~~~~~--~~~--~~~~-~~~~~~~~~~~~~~~~~----- 86 (213)
T d1l8qa2 18 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLL-QAAGNEAKK--RGY--RVIY-SSADDFAQAMVEHLKKG----- 86 (213)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHH-HHHHHHHHH--TTC--CEEE-EEHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHH-HHHHHHhcc--Ccc--ceEE-echHHHHHHHHHHHHcc-----
Confidence 444344444544321 23899999999999765 455555554 122 4444 45556655554443310
Q ss_pred CcEEEEEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHH-HHHHHHHHHhh
Q 000129 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV-IVSRMRYIASQ 1497 (2114)
Q Consensus 1419 g~~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~-i~srl~~i~~~ 1497 (2114)
.+..+. ..+...++++||++|.+.+.. .++. +...+..+.
T Consensus 87 --------------------------~~~~~~---------~~~~~~dll~iDDi~~i~~~~--~~~~~lf~lin~~~-- 127 (213)
T d1l8qa2 87 --------------------------TINEFR---------NMYKSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLY-- 127 (213)
T ss_dssp --------------------------CHHHHH---------HHHHTCSEEEEECGGGGTTCH--HHHHHHHHHHHHHH--
T ss_pred --------------------------chhhHH---------HHHhhccchhhhhhhhhcCch--HHHHHHHHHHHHHh--
Confidence 011111 124568999999999986432 2222 333333322
Q ss_pred cCCCceEEEEcccCC
Q 000129 1498 VENKIRIVALSTSLA 1512 (2114)
Q Consensus 1498 ~~~~~riV~lSATl~ 1512 (2114)
..+.++|+.|...|
T Consensus 128 -~~~~~iiits~~~p 141 (213)
T d1l8qa2 128 -LLEKQIILASDRHP 141 (213)
T ss_dssp -HTTCEEEEEESSCG
T ss_pred -hccceEEEecCCcc
Confidence 34567666665443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.80 E-value=0.18 Score=54.09 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=34.1
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc-cHHHHHHHHHHHHHHhc
Q 000129 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFG 1415 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P-tr~La~q~~~~~~~~f~ 1415 (2114)
...++++||||+|||+...=... ++.. .+.. -+++.+- .|.-+.++.+.|.+.++
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~-~~~~--~g~k-V~lit~Dt~R~gA~eQL~~~a~~l~ 61 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR-YYQN--LGKK-VMFCAGDTFRAAGGTQLSEWGKRLS 61 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH-HHHT--TTCC-EEEECCCCSSTTHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHH--CCCc-EEEEEeccccccchhhHhhcccccC
Confidence 34577899999999987643332 2333 2331 3333343 47888888888876653
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.43 E-value=0.37 Score=51.23 Aligned_cols=116 Identities=10% Similarity=-0.013 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCC--CcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000129 1346 QTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2114)
Q Consensus 1346 Q~q~~~~il~~~--~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~ 1423 (2114)
|.+.+..+.+.+ .++++.||.|+|||..+... .+.+.. .....+-++++.|...-
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l-~~~i~~-~~~~h~D~~~i~~~~~~--------------------- 58 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLEL-PEYVEK-FPPKASDVLEIDPEGEN--------------------- 58 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHH-HHHHHT-SCCCTTTEEEECCSSSC---------------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHH-HHHHhc-cccCCCCEEEEeCCcCC---------------------
Confidence 667778877643 47999999999999887432 233332 12222235566553110
Q ss_pred EEcCCcccchhhccCCcEEEEChhhHHHHHhhhcccccccceeEEEecccccccCCCCchHHHHHHHHHHHHhhcCCCce
Q 000129 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2114)
Q Consensus 1424 ~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~g~~le~i~srl~~i~~~~~~~~r 1503 (2114)
| .-+.+-.+.+.....+.....+++|+||||.+... ....+.......+....
T Consensus 59 -----------------I---~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~-------aqNaLLK~LEEPp~~t~ 111 (198)
T d2gnoa2 59 -----------------I---GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------AANAFLKALEEPPEYAV 111 (198)
T ss_dssp -----------------B---CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------HHHHTHHHHHSCCTTEE
T ss_pred -----------------C---CHHHHHHHHHHHhhCcccCCCEEEEEeCccccchh-------hhhHHHHHHhCCCCCce
Confidence 0 00111112222222333456689999999999632 22233333344456788
Q ss_pred EEEEcccC
Q 000129 1504 IVALSTSL 1511 (2114)
Q Consensus 1504 iV~lSATl 1511 (2114)
++++|..+
T Consensus 112 fiLit~~~ 119 (198)
T d2gnoa2 112 IVLNTRRW 119 (198)
T ss_dssp EEEEESCG
T ss_pred eeeccCCh
Confidence 88776654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.32 E-value=0.21 Score=53.68 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=28.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHHhh
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRL 574 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP--~raLa~q~~~~~~~~~ 574 (2114)
.++++||||+|||....--+.+...++ .++.+|+- .|.=+.++.+.+.+.+
T Consensus 14 vi~lvGptGvGKTTTiAKLA~~~~~~g-----------~kV~lit~Dt~R~ga~eQL~~~a~~l 66 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAYFYKKKG-----------FKVGLVGADVYRPAALEQLQQLGQQI 66 (211)
T ss_dssp EEEEECSCCC----HHHHHHHHHHHTT-----------CCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-----------CceEEEEeeccccchhHHHHHhcccc
Confidence 366799999999987543333332221 13433332 5777888888887765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.03 E-value=0.21 Score=55.51 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=27.0
Q ss_pred cEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...|+ +....+++.++..+......-+++.+.+|
T Consensus 106 ~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatT 157 (256)
T d1lv7a_ 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (256)
T ss_dssp EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred EEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 5788999998754321 34455666666655544444455555455
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.79 E-value=0.088 Score=44.70 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=44.4
Q ss_pred cccCCCCCHHHHHHHHhCCC-chhhhccCChHHhhhhhcC-chhHHHHHHHHhcC
Q 000129 1144 LRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQF 1196 (2114)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 1196 (2114)
|..+||||+.++++|.++|+ +++++.+.++++|.++-+. .+.++.|.+.++..
T Consensus 3 L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~ 57 (61)
T d1pzna1 3 IEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 57 (61)
T ss_dssp SSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999987 7899999999999998764 45667777766654
|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Aeropyrum pernix [TaxId: 56636]
Probab=91.62 E-value=0.089 Score=46.06 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=47.7
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
|..|||||+..+++|.++ +.|+.++++++.++..++-++++...+.|.++++.
T Consensus 15 L~~IpgIG~~~a~~L~~~----F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~~ 67 (70)
T d2bgwa1 15 LQSFPGIGRRTAERILER----FGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 67 (70)
T ss_dssp HHTSTTCCHHHHHHHHHH----HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCcCHHHHHHHHHH----hCCHHHHHHcCHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 558999999999998775 66999999999999999989999999999999874
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.28 E-value=0.65 Score=49.87 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHcCC----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000129 497 NRVQSRVYKSALSSA----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2114)
Q Consensus 497 ~~iQ~~~i~~~l~~~----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (2114)
|..-..++..+.+.. ..++++||+|+|||-.+. ++.+.+... +..++| .+...+..+....+.
T Consensus 18 N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~-A~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~ 84 (213)
T d1l8qa2 18 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQ-AAGNEAKKR----------GYRVIY-SSADDFAQAMVEHLK 84 (213)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHH-HHHHHHHHT----------TCCEEE-EEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHH-HHHHHhccC----------ccceEE-echHHHHHHHHHHHH
Confidence 444444555544432 238999999999996543 444444332 123444 466666666655543
|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.062 Score=46.85 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=49.3
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
.++.|||++..+++|+++| +.|+.+|+.+..++..++-++++.....|.+.++.
T Consensus 12 ~L~~~Gig~~~i~kL~~aG---~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k 65 (70)
T d1b22a_ 12 RLEQCGINANDVKKLEEAG---FHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 65 (70)
T ss_dssp HHHHTTCSHHHHHHHHTTC---CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHcC---cchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999 99999999999999888889999999999888775
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.27 E-value=0.27 Score=54.35 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=27.5
Q ss_pred cEEEEecccccccCCc-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+...|+ .....+++.++..+.....+.+++.+.+|
T Consensus 103 ~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tT 154 (247)
T d1ixza_ 103 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 154 (247)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred EEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 4899999998854322 33445666666666554555566666555
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.44 Score=52.83 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.5
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
...+++.||+|+|||..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHH
Confidence 4679999999999998874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.13 E-value=0.54 Score=50.82 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHcCC--CcEEEEccCCCchHHHHHHHH
Q 000129 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAVLTI 532 (2114)
Q Consensus 501 ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~i 532 (2114)
.+.+..++..+ .++|+.||.|+|||.++.+.+
T Consensus 24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHH
Confidence 34455555543 379999999999999875543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.95 E-value=0.64 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHhhh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNHQK 1384 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l~~ 1384 (2114)
.++|+.||+|+|||.++. .+.+.+..
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~-~~~~~l~~ 60 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIAR-LLAKGLNC 60 (239)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHHHHC
T ss_pred eeEEEECCCCCcHHHHHH-HHHHHhcC
Confidence 348999999999999875 44555543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.76 E-value=0.58 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000129 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (2114)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (2114)
+..|++++||.|.|||.+..-.+.+
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHH
Confidence 4569999999999999887544433
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.66 E-value=0.31 Score=53.76 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
...+|+.||+|+|||.++-
T Consensus 42 ~~giLl~GppGtGKT~la~ 60 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLAR 60 (247)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CceEEEecCCCCChhHHHH
Confidence 3469999999999998873
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=89.58 E-value=0.064 Score=61.99 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHH
Q 000129 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2114)
Q Consensus 1341 ~~~~iQ~q~~~~il~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~L 1402 (2114)
.+.+-+...+..+...+.|++|+||||||||+.. -+++..+. +.. +++.|.-+.||
T Consensus 150 ~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i~---~~~--rivtiEd~~El 205 (323)
T d1g6oa_ 150 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIP---KEE--RIISIEDTEEI 205 (323)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGSC---TTC--CEEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhcc---ccc--ceeeccchhhh
Confidence 3456667788888888999999999999999864 44444332 233 88888888776
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=89.34 E-value=0.28 Score=58.15 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHH----cCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000129 1342 FNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2114)
Q Consensus 1342 ~~~iQ~q~~~~il----~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~ 1416 (2114)
|.--|=+||..+. .+....+|.|-||||||++.. .+++.. ++ .+|||+|+..+|.|++++++..+++
T Consensus 12 p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-----~r--p~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-----NK--PTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-----TC--CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh-----CC--CEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 4445666666554 355678999999999996552 233322 22 6899999999999999999966553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=88.59 E-value=0.11 Score=59.84 Aligned_cols=56 Identities=18% Similarity=0.384 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000129 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2114)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (2114)
...+-+...+..+...+.|++|+||||||||... -+++..+ . ...+++.|--+.+|
T Consensus 150 ~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i----~-------~~~rivtiEd~~El 205 (323)
T d1g6oa_ 150 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFI----P-------KEERIISIEDTEEI 205 (323)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGS----C-------TTCCEEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhc----c-------cccceeeccchhhh
Confidence 3456677888888889999999999999999753 3333332 2 12378888777775
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=88.48 E-value=0.87 Score=46.78 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=18.7
Q ss_pred cEEEEecCCCchHHHHHHHHHHHhhh
Q 000129 1359 NVLVAAPTGSGKTICSEFAILRNHQK 1384 (2114)
Q Consensus 1359 nvli~ApTGSGKTl~~~l~il~~l~~ 1384 (2114)
.++|.||+|||||+.+ ..++..+..
T Consensus 2 ki~I~G~~G~GKSTLl-~~i~~~l~~ 26 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLV-KKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHGG
T ss_pred EEEEECCCCcHHHHHH-HHHHhcCCC
Confidence 4899999999999864 445555544
|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.17 E-value=0.21 Score=43.33 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=47.5
Q ss_pred cccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1935 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1935 L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
|..|||||+..+++|.++ +.|+..+++++.++...+-++++...+.|.++++.
T Consensus 12 L~~I~gIG~~~a~~L~~~----f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~~~ 64 (68)
T d1x2ia1 12 VEGLPHVSATLARRLLKH----FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 64 (68)
T ss_dssp HTTSTTCCHHHHHHHHHH----HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCcCHHHHHHHHHH----cCCHHHHHHhHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 567999999999998875 67999999999999888888999999999999874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.91 E-value=0.1 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=17.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQL 536 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l 536 (2114)
++|+.||.|+|||.++.. +.+.+
T Consensus 35 ~lll~Gp~G~GKTt~~~~-la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMA-LLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHT-HHHHH
T ss_pred eEEEECCCCCCHHHHHHH-HHHhh
Confidence 699999999999987743 33443
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.65 E-value=0.13 Score=42.74 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=43.8
Q ss_pred CccccCCCCCHHHHHHHHhCCCchhhhccCChHHhhhhhcC-chhHHHHHHHHh
Q 000129 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRF-PKMGRTLHKFVH 1194 (2114)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 1194 (2114)
|.|-++||+|+..+++|.++=-+++.+...+.+||.++-+. ++.++.|++++|
T Consensus 2 S~L~~I~gVG~~~a~~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56)
T d1kfta_ 2 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred CCcccCCCccHHHHHHHHHHhCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHc
Confidence 56889999999999999876227888888899999998442 778888988876
|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA excision repair protein ERCC-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=0.25 Score=44.08 Aligned_cols=54 Identities=6% Similarity=0.006 Sum_probs=48.2
Q ss_pred ccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhc
Q 000129 1934 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 1991 (2114)
Q Consensus 1934 ~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~ 1991 (2114)
-|..+||||+..++.|.++ +.|+.+|.++..++...+-++++...+.|.++++.
T Consensus 20 ~L~~I~gIg~~~a~~L~~~----F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f~~ 73 (78)
T d2a1jb1 20 CLTTVKSVNKTDSQTLLTT----FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (78)
T ss_dssp HHTTSTTCCHHHHHHHHHH----HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HhcCCCCcCHHHHHHHHHH----hCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHHcC
Confidence 3668999999999998865 67999999999999988889999999999999974
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.34 E-value=0.4 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=18.6
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHh
Q 000129 1358 DNVLVAAPTGSGKTICSEFAILRNH 1382 (2114)
Q Consensus 1358 ~nvli~ApTGSGKTl~~~l~il~~l 1382 (2114)
.++++.||+|+|||.++ .++.+.+
T Consensus 34 ~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp CCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHhh
Confidence 36999999999999887 4444444
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=86.48 E-value=0.7 Score=47.53 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=17.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHH
Q 000129 513 NILLCAPTGAGKTNVAVLTILQQLA 537 (2114)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~ 537 (2114)
.++|.||+|||||+.+ ..++..+.
T Consensus 2 ki~I~G~~G~GKSTLl-~~i~~~l~ 25 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLV-KKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHG
T ss_pred EEEEECCCCcHHHHHH-HHHHhcCC
Confidence 3899999999999864 34444443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.95 E-value=0.41 Score=52.66 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchHHHHH
Q 000129 512 DNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2114)
.++|++||+|+|||.++-
T Consensus 53 ~~lll~GPpG~GKTt~a~ 70 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAH 70 (253)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.40 E-value=1.1 Score=49.39 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=15.7
Q ss_pred CCcEEEEecCCCchHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICS 1374 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~ 1374 (2114)
...+|+.||+|||||..+
T Consensus 38 ~~giLL~GppGtGKT~l~ 55 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIA 55 (258)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CceeEEecCCCCCchHHH
Confidence 456999999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=84.37 E-value=2.3 Score=46.98 Aligned_cols=144 Identities=10% Similarity=0.125 Sum_probs=68.6
Q ss_pred HcCCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC----Cc
Q 000129 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG----ET 1429 (2114)
Q Consensus 1354 l~~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~Ptr~La~q~~~~~~~~f~~~~g~~v~~l~G----~~ 1429 (2114)
+..++-++|+|+||+|||..+...+++.... .+. +++|+..--. ..++..++...... +....... ..
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~--~g~--~v~~~s~E~~-~~~~~~r~~~~~~~---~~~~~~~~~~~~~~ 103 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGK--KVGLAMLEES-VEETAEDLIGLHNR---VRLRQSDSLKREII 103 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHT--SCC--CEEEEESSSC-HHHHHHHHHHHHTT---CCGGGCHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhh--ccc--ceeEeeeccc-hhhHHhHHHHHhhc---CCchhhcccccchh
Confidence 3456779999999999997765555543333 233 7788864322 23333333322221 11100000 00
Q ss_pred cc-c----hhh-ccCCcEEE------EChhhHHHHHhhhcccccccceeEEEecccccccCCC-----CchHHHHHHHHH
Q 000129 1430 AM-D----LKL-LEKGQIII------STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-----GPVLEVIVSRMR 1492 (2114)
Q Consensus 1430 ~~-~----~~~-l~~~~IIV------~TPe~l~~l~r~~~~~~~l~~v~liIiDEaH~l~~~~-----g~~le~i~srl~ 1492 (2114)
.. . ... .....+.+ .++..+....+... .-.++++||||=++.+.... ...+..+...++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~ 180 (277)
T d1cr2a_ 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMR---SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLK 180 (277)
T ss_dssp HTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHH---HTTCCSEEEEEEEEC----------CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhh---hccCcceEEEcccccccccccccchhHHHHHHHHHHH
Confidence 00 0 000 11112222 23333333333221 12357899999999875422 123455667777
Q ss_pred HHHhhcCCCceEEEEccc
Q 000129 1493 YIASQVENKIRIVALSTS 1510 (2114)
Q Consensus 1493 ~i~~~~~~~~riV~lSAT 1510 (2114)
.++... ++-++++|-+
T Consensus 181 ~lA~~~--~i~vi~~~q~ 196 (277)
T d1cr2a_ 181 GFAKST--GVVLVVICHL 196 (277)
T ss_dssp HHHHHH--CCEEEEEEEC
T ss_pred HHhhhc--cccceeeccc
Confidence 776654 5667776654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=83.38 E-value=1.9 Score=46.69 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCCcEEEEecCCCchHHHHHHHHHHHhhhccCCCceEEEEEcc
Q 000129 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2114)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~~~l~il~~l~~~~~~~~~k~l~I~P 1398 (2114)
.+..++|.||+|+|||..+...+.+.... +. +++|+.-
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~---~~--~~~~is~ 62 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVENACAN---KE--RAILFAY 62 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--CEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---cc--ccceeec
Confidence 46779999999999999886666654433 33 6777764
|
| >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: PsbU/PolX domain-like family: PsbU-like domain: Photosystem II 12 kDa extrinsic protein PsbU species: Thermosynechococcus elongatus [TaxId: 146786]
Probab=82.55 E-value=0.54 Score=43.31 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=42.0
Q ss_pred CccccCCCCCHHHHHHHHcCCCCcccCHHHHhcCCHHHHHHHhcCChHHHHHHHHHHhcC
Q 000129 1933 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 1992 (2114)
Q Consensus 1933 s~L~QLP~i~~~~~~~l~~~~~~~i~t~~dl~~~~~~~r~~ll~~~~~~~~~i~~~~~~~ 1992 (2114)
..|.+|||||+..++++.++| ++.++.||++. -+++++.++.+.+.+..|
T Consensus 27 ~eL~~lpGIg~~~A~~Iv~~g--pf~s~edL~~V--------~GIg~~~~e~lk~yl~~f 76 (98)
T d2axtu1 27 AAFIQYRGLYPTLAKLIVKNA--PYESVEDVLNI--------PGLTERQKQILRENLEHF 76 (98)
T ss_dssp GGGTTSTTCTHHHHHHHHHSC--CCSSGGGGGGC--------TTCCTTHHHHHHHHGGGE
T ss_pred HHHHHhhhhcHHHHHHHHHcC--CcCCHHHHhhC--------CCCCHHHHHHHHHHHhcc
Confidence 469999999999999988887 69999999864 458888888888877654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.41 E-value=0.24 Score=59.50 Aligned_cols=19 Identities=53% Similarity=0.847 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000129 511 ADNILLCAPTGAGKTNVAV 529 (2114)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2114)
..|+|++||||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 3589999999999999774
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.33 E-value=0.34 Score=55.21 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=24.5
Q ss_pred cEEEEecccccccCCch-----hHHHHHHHHHHHHhhccccccEEEEccccC
Q 000129 625 KLLIIDEIHLLHDNRGP-----VLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2114)
Q Consensus 625 ~liIiDEaH~l~d~rg~-----~le~iv~rl~~~~~~~~~~~riv~lSATlp 671 (2114)
.+|+|||+|.+...|+. ..+..+..++..+......-.++.+.||=|
T Consensus 184 ~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC
Confidence 59999999998653321 123444444444433333334667777733
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=82.20 E-value=1 Score=53.09 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=40.6
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000129 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (2114)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (2114)
.+....+|.|-||||||++.. .+++.. . ..+|||+|...+|.|+++.++.++..
T Consensus 29 ~g~~~q~l~GltGS~ka~~iA-~l~~~~---~----------rp~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 29 RGVKHQTLLGATGTGKTFTIS-NVIAQV---N----------KPTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp HTCSEEEEEECTTSCHHHHHH-HHHHHH---T----------CCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cCCCcEEEeCCCCcHHHHHHH-HHHHHh---C----------CCEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 344668899999999997643 222222 1 14899999999999999999998753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.04 E-value=1.8 Score=46.89 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHc----CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000129 504 YKSALS----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2114)
Q Consensus 504 i~~~l~----~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (2114)
++.++. .+..++|.||+|+|||..++..+.+.+..+ .+++|++-
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-----------~~~~~is~ 62 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANK-----------ERAILFAY 62 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-----------CCEEEEES
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-----------cccceeec
Confidence 555555 356789999999999999877777655432 25777763
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.00 E-value=2.9 Score=45.90 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=27.1
Q ss_pred cEEEEecccccccC----CchhHHHHHHHHHHHHhhccccccEEEEccc
Q 000129 625 KLLIIDEIHLLHDN----RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2114)
Q Consensus 625 ~liIiDEaH~l~d~----rg~~le~iv~rl~~~~~~~~~~~riv~lSAT 669 (2114)
.+|+|||+|.+... .+.....++..+...........+++.+-+|
T Consensus 99 ~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tT 147 (258)
T d1e32a2 99 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 147 (258)
T ss_dssp EEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEE
T ss_pred eEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeC
Confidence 58999999998642 2333444555555444444555566655555
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.89 E-value=2 Score=50.12 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHHHH-cCCCcEEEEecCCCchHHHHHHHHH
Q 000129 1348 QVFTVLY-NTDDNVLVAAPTGSGKTICSEFAIL 1379 (2114)
Q Consensus 1348 q~~~~il-~~~~nvli~ApTGSGKTl~~~l~il 1379 (2114)
+++..+. .+..|+++.||.|.|||.+.+-.+.
T Consensus 33 ~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 33 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence 4444444 3567899999999999988764333
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.30 E-value=0.31 Score=58.52 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=16.9
Q ss_pred CCcEEEEecCCCchHHHHH
Q 000129 1357 DDNVLVAAPTGSGKTICSE 1375 (2114)
Q Consensus 1357 ~~nvli~ApTGSGKTl~~~ 1375 (2114)
..|+|+.||||||||+++-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 5699999999999998874
|